Artigo em revista |
- Jade Castel; Stéphane Hourdez; Florence Pradillon; Claire Daguin-Thiebaut; Marion Ballenghien; Stéphanie Ruault; Erwan Corre;
et al. "Inter-Specific Genetic Exchange Despite Strong Divergence in Deep-Sea Hydrothermal Vent Gastropods of the Genus Alviniconcha".
Genes (2022): https://www.mdpi.com/2073-4425/13/6/985.
10.3390/genes13060985
- Carine Rey; Audrey Darnaude; Franck Ferraton; Bruno Guinand; François Bonhomme; Nicolas Bierne; Pierre-Alexandre Gagnaire.
"Within-Generation Polygenic Selection Shapes Fitness-Related Traits across Environments in Juvenile Sea Bream". Genes
(2020): https://www.mdpi.com/2073-4425/11/4/398.
10.3390/genes11040398
- Sylvie Lapegue; Serge Heurtebise; Florence Cornette; Erwan Guichoux; Pierre-Alexandre Gagnaire. "Genetic Characterization
of Cupped Oyster Resources in Europe Using Informative Single Nucleotide Polymorphism (SNP) Panels". Genes (2020):
https://www.mdpi.com/2073-4425/11/4/451.
10.3390/genes11040451
- Leitwein, Maeva; Duranton, Maud; Rougemont, Quentin; Gagnaire, Pierre-Alexandre; Bernatchez, Louis. "Using Haplotype Information
for Conservation Genomics". Trends in Ecology & Evolution 35 3 (2020): 245-258. http://dx.doi.org/10.1016/j.tree.2019.10.012.
10.1016/j.tree.2019.10.012
- Leitwein, Maeva; Cayuela, Hugo; Ferchaud, Anne-Laure; Normandeau, Éric; Gagnaire, Pierre-Alexandre; Bernatchez, Louis. "The
role of recombination on genome-wide patterns of local ancestry exemplified by supplemented brook charr populations". Molecular
Ecology 28 21 (2019): 4755-4769. http://dx.doi.org/10.1111/mec.15256.
10.1111/mec.15256
- Rougeux, Clément; Gagnaire, Pierre-Alexandre; Praebel, Kim; Seehausen, Ole; Bernatchez, Louis. "Polygenic selection drives
the evolution of convergent transcriptomic landscapes across continents within a Nearctic sister species complex". Molecular
Ecology 28 19 (2019): 4388-4403. http://dx.doi.org/10.1111/mec.15226.
10.1111/mec.15226
- Saint-Pé, Keoni; Leitwein, Maeva; Tissot, Laurence; Poulet, Nicolas; Guinand, Bruno; Berrebi, Patrick; Marselli, Geoffrey;
et al. "Development of a large SNPs resource and a low-density SNP array for brown trout (Salmo trutta) population genetics".
BMC Genomics 20 1 (2019): http://dx.doi.org/10.1186/s12864-019-5958-9.
10.1186/s12864-019-5958-9
- Duranton, Maud; Bonhomme, François; Gagnaire, Pierre-Alexandre. "The spatial scale of dispersal revealed by admixture tracts".
Evolutionary Applications 12 9 (2019): 1743-1756. http://dx.doi.org/10.1111/eva.12829.
10.1111/eva.12829
- Vandeputte, M.; Gagnaire, P.-A.; Allal, F.. "The European sea bass: a key marine fish model in the wild and in aquaculture".
Animal Genetics 50 3 (2019): 195-206. http://dx.doi.org/10.1111/age.12779.
10.1111/age.12779
- Riquet, Florentine; Liautard-Haag, Cathy; Woodall, Lucy; Bouza, Carmen; Louisy, Patrick; Hamer, Bojan; Otero-Ferrer, Francisco;
et al. "Parallel pattern of differentiation at a genomic island shared between clinal and mosaic hybrid zones in a complex
of cryptic seahorse lineages". Evolution 73 4 (2019): 817-835. http://dx.doi.org/10.1111/evo.13696.
10.1111/evo.13696
- Faggion, Sara; Vandeputte, Marc; Chatain, Béatrice; Gagnaire, Pierre-Alexandre; Allal, François. "Population-specific variations
of the genetic architecture of sex determination in wild European sea bass Dicentrarchus labrax L.". Heredity 122 5
(2018): 612-621. http://dx.doi.org/10.1038/s41437-018-0157-z.
10.1038/s41437-018-0157-z
- Gagnaire, Pierre-Alexandre; Lamy, Jean-Baptiste; Cornette, Florence; Heurtebise, Serge; Dégremont, Lionel; Flahauw, Emilie;
Boudry, Pierre; Bierne, Nicolas; Lapègue, Sylvie. "Analysis of Genome-Wide Differentiation between Native and Introduced Populations
of the Cupped Oysters Crassostrea gigas and Crassostrea angulata". Genome Biology and Evolution 10 9 (2018): 2518-2534.
http://dx.doi.org/10.1093/gbe/evy194.
10.1093/gbe/evy194
- Leitwein, Maeva; Gagnaire, Pierre-Alexandre; Desmarais, Erick; Berrebi, Patrick; Guinand, Bruno. "Genomic consequences of
a recent three-way admixture in supplemented wild brown trout populations revealed by local ancestry tracts". Molecular
Ecology 27 17 (2018): 3466-3483. http://dx.doi.org/10.1111/mec.14816.
10.1111/mec.14816
- Fraïsse, Christelle; Roux, Camille; Gagnaire, Pierre-Alexandre; Romiguier, Jonathan; Faivre, Nicolas; Welch, John J.; Bierne,
Nicolas. "The divergence history of European blue mussel species reconstructed from Approximate Bayesian Computation: the
effects of sequencing techniques and sampling strategies". PeerJ 6 (2018): e5198. http://dx.doi.org/10.7717/peerj.5198.
10.7717/peerj.5198
- Duranton, Maud; Allal, François; Fraïsse, Christelle; Bierne, Nicolas; Bonhomme, François; Gagnaire, Pierre-Alexandre. "The
origin and remolding of genomic islands of differentiation in the European sea bass". Nature Communications 9 1 (2018):
http://dx.doi.org/10.1038/s41467-018-04963-6.
10.1038/s41467-018-04963-6
- Souissi, Ahmed; Bonhomme, François; Manchado, Manuel; Bahri-Sfar, Lilia; Gagnaire, Pierre-Alexandre. "Genomic and geographic
footprints of differential introgression between two divergent fish species (Solea spp.)". Heredity 121 6 (2018): 579-593.
http://dx.doi.org/10.1038/s41437-018-0079-9.
10.1038/s41437-018-0079-9
- Babin, Charles; Gagnaire, Pierre-Alexandre; Pavey, Scott A; Bernatchez, Louis. "RAD-Seq Reveals Patterns of Additive Polygenic
Variation Caused by Spatially-Varying Selection in the American Eel (Anguilla rostrata)". Genome Biology and Evolution
9 11 (2017): 2974-2986. http://dx.doi.org/10.1093/gbe/evx226.
10.1093/gbe/evx226
- Rougeux, Clément; Bernatchez, Louis; Gagnaire, Pierre-Alexandre. "Modeling the Multiple Facets of Speciation-with-Gene-Flow
toward Inferring the Divergence History of Lake Whitefish Species Pairs (Coregonus clupeaformis)". Genome Biology and Evolution
9 8 (2017): 2057-2074. http://dx.doi.org/10.1093/gbe/evx150.
10.1093/gbe/evx150
- Leitwein, Maeva; Guinand, Bruno; Pouzadoux, Juliette; Desmarais, Erick; Berrebi, Patrick; Gagnaire, Pierre-Alexandre. "A Dense
Brown Trout (Salmo trutta) Linkage Map Reveals Recent Chromosomal Rearrangements in theSalmoGenus and the Impact of Selection
on Linked Neutral Diversity". G3: Genes|Genomes|Genetics 7 4 (2017): 1365-1376. http://dx.doi.org/10.1534/g3.116.038497.
10.1534/g3.116.038497
- Souissi, Ahmed; Gagnaire, Pierre-Alexandre; Bonhomme, François; Bahri-Sfar, Lilia. "Introgressive hybridization and morphological
transgression in the contact zone between two MediterraneanSoleaspecies". Ecology and Evolution 7 5 (2017): 1394-1402.
http://dx.doi.org/10.1002/ece3.2533.
10.1002/ece3.2533
- Guinand, B; Chauvel, C; Lechene, M; Tournois, J; Tsigenopoulos, CS; Darnaude, AM; McKenzie, DJ; Gagnaire, PA. "Candidate gene
variation in gilthead sea bream reveals complex spatiotemporal selection patterns between marine and lagoon habitats". Marine
Ecology Progress Series 558 (2016): 115-127. http://dx.doi.org/10.3354/meps11851.
10.3354/meps11851
- Rougemont, Quentin; Gagnaire, Pierre-Alexandre; Perrier, Charles; Genthon, Clémence; Besnard, Anne-Laure; Launey, Sophie;
Evanno, Guillaume. "Inferring the demographic history underlying parallel genomic divergence among pairs of parasitic and
nonparasitic lamprey ecotypes". Molecular Ecology 26 1 (2016): 142-162. http://dx.doi.org/10.1111/mec.13664.
10.1111/mec.13664
- Le Moan, A.; Gagnaire, P.-A.; Bonhomme, F.. "Parallel genetic divergence among coastal-marine ecotype pairs of European anchovy
explained by differential introgression after secondary contact". Molecular Ecology 25 13 (2016): 3187-3202. http://dx.doi.org/10.1111/mec.13627.
10.1111/mec.13627
- Szulkin, M.; Gagnaire, P.-A.; Bierne, N.; Charmantier, A.. "Population genomic footprints of fine-scale differentiation between
habitats in Mediterranean blue tits". Molecular Ecology 25 2 (2016): 542-558. http://dx.doi.org/10.1111/mec.13486.
10.1111/mec.13486
- Miller, Michael J.; Feunteun, Eric; Aoyama, Jun; Watanabe, Shun; Kuroki, Mari; Lecomte-Finiger, Raymonde; Minegishi, Yuki;
et al. "Biodiversity and distribution of leptocephali west of the Mascarene Plateau in the southwestern Indian Ocean". Progress
in Oceanography 137 (2015): 84-102. http://dx.doi.org/10.1016/j.pocean.2015.05.026.
10.1016/j.pocean.2015.05.026
- Gagnaire, Pierre-Alexandre; Broquet, Thomas; Aurelle, Didier; Viard, Frédérique; Souissi, Ahmed; Bonhomme, François; Arnaud-Haond,
Sophie; Bierne, Nicolas. "Using neutral, selected, and hitchhiker loci to assess connectivity of marine populations in the
genomic era". Evolutionary Applications 8 8 (2015): 769-786. http://dx.doi.org/10.1111/eva.12288.
10.1111/eva.12288
- Tine, Mbaye; Kuhl, Heiner; Gagnaire, Pierre-Alexandre; Louro, Bruno; Desmarais, Erick; Martins, Rute S.T.; Hecht, Jochen;
et al. "European sea bass genome and its variation provide insights into adaptation to euryhalinity and speciation". Nature
Communications 5 1 (2014): http://dx.doi.org/10.1038/ncomms6770.
10.1038/ncomms6770
- Sevellec, M.; Pavey, S. A.; Boutin, S.; Filteau, M.; Derome, N.; Bernatchez, L.. "Microbiome investigation in the ecological
speciation context of lake whitefish (Coregonus clupeaformis) using next-generation sequencing". Journal of Evolutionary
Biology 27 6 (2014): 1029-1046. http://dx.doi.org/10.1111/jeb.12374.
10.1111/jeb.12374
- Ulrik, Malene G; Pujolar, José; Ferchaud, Anne-Laure; Jacobsen, Magnus W; Als, Thomas D; Gagnaire, Pierre; Frydenberg, Jane;
et al. "Do North Atlantic eels show parallel patterns of spatially varying selection?". BMC Evolutionary Biology 14
1 (2014): 138. http://dx.doi.org/10.1186/1471-2148-14-138.
10.1186/1471-2148-14-138
- Gagnaire, Pierre-Alexandre; Pavey, Scott A.; Normandeau, Eric; Bernatchez, Louis. "THE GENETIC ARCHITECTURE OF REPRODUCTIVE
ISOLATION DURING SPECIATION-WITH-GENE-FLOW IN LAKE WHITEFISH SPECIES PAIRS ASSESSED BY RAD SEQUENCING". Evolution 67
9 (2013): 2483-2497. http://dx.doi.org/10.1111/evo.12075.
10.1111/evo.12075
- Bierne, Nicolas; Gagnaire, Pierre-Alexandre; David, Patrice. "The geography of introgression in a patchy environment and the
thorn in the side of ecological speciation". Current Zoology 59 1 (2013): 72-86. http://dx.doi.org/10.1093/czoolo/59.1.72.
10.1093/czoolo/59.1.72
- Côté, Caroline L.; Gagnaire, Pierre-Alexandre; Bourret, Vincent; Verreault, Guy; Castonguay, Martin; Bernatchez, Louis. "Population
genetics of the American eel (Anguilla rostrata):FST = 0 and North Atlantic Oscillation effects on demographic fluctuations
of a panmictic species". Molecular Ecology 22 7 (2012): 1763-1776. http://dx.doi.org/10.1111/mec.12142.
10.1111/mec.12142
- Gagnaire, Pierre-Alexandre; Normandeau, Eric; Pavey, Scott A.; Bernatchez, Louis. "Mapping phenotypic, expression and transmission
ratio distortion QTL using RAD markers in the Lake Whitefish(Coregonus clupeaformis)". Molecular Ecology 22 11 (2012):
3036-3048. http://dx.doi.org/10.1111/mec.12127.
10.1111/mec.12127
- Chaoui, Lamya; Gagnaire, Pierre-Alexandre; Guinand, Bruno; Quignard, Jean-Pierre; Tsigenopoulos, Costas; Kara, M. Hichem;
Bonhomme, François. "Microsatellite length variation in candidate genes correlates with habitat in the gilthead sea breamSparus
aurata". Molecular Ecology 21 22 (2012): 5497-5511. http://dx.doi.org/10.1111/mec.12062.
10.1111/mec.12062
- Laflamme, Simon; Côté, Caroline; Gagnaire, Pierre-Alexandre; Castonguay, Martin; Bernatchez, Louis. "RNA/DNA ratios in American
glass eels (Anguilla rostrata): evidence for latitudinal variation in physiological status and constraints to oceanic migration?".
Ecology and Evolution 2 5 (2012): 875-884. http://dx.doi.org/10.1002/ece3.212.
10.1002/ece3.212
- Gagnaire, Pierre-Alexandre; Normandeau, Eric; Bernatchez, Louis. "Comparative Genomics Reveals Adaptive Protein Evolution
and a Possible Cytonuclear Incompatibility between European and American Eels". Molecular Biology and Evolution 29
10 (2012): 2909-2919. http://dx.doi.org/10.1093/molbev/mss076.
10.1093/molbev/mss076
- Gagnaire, Pierre-Alexandre; Normandeau, Eric; Côté, Caroline; Møller Hansen, Michael; Bernatchez, Louis. "The Genetic Consequences
of Spatially Varying Selection in the Panmictic American Eel (Anguilla rostrata)". Genetics 190 2 (2011): 725-736.
http://dx.doi.org/10.1534/genetics.111.134825.
10.1534/genetics.111.134825
- Minegishi, Yuki; Gagnaire, Pierre-Alexandre; Aoyama, Jun; Bosc, Pierre; Feunteun, Eric; Tsukamoto, Katsumi; Berrebi, Patrick.
"Present and past genetic connectivity of the Indo-Pacific tropical eel Anguilla bicolor". Journal of Biogeography
39 2 (2011): 408-420. http://dx.doi.org/10.1111/j.1365-2699.2011.02603.x.
10.1111/j.1365-2699.2011.02603.x
- Gagnaire, Pierre-Alexandre; Minegishi, Yuki; Zenboudji, Saliha; Valade, Pierre; Aoyama, Jun; Berrebi, Patrick. "WITHIN-POPULATION
STRUCTURE HIGHLIGHTED BY DIFFERENTIAL INTROGRESSION ACROSS SEMIPERMEABLE BARRIERS TO GENE FLOW IN ANGUILLA MARMORATA". Evolution
65 12 (2011): 3413-3427. http://dx.doi.org/10.1111/j.1558-5646.2011.01404.x.
10.1111/j.1558-5646.2011.01404.x
- GAGNAIRE, P. A.; ALBERT, V.; JÓNSSON, B.; BERNATCHEZ, L.. "Natural selection influences AFLP intraspecific genetic variability
and introgression patterns in Atlantic eels". Molecular Ecology 18 8 (2009): 1678-1691. http://dx.doi.org/10.1111/j.1365-294x.2009.04142.x.
10.1111/j.1365-294x.2009.04142.x
- Gagnaire, PA; Minegishi, Y; Aoyama, J; Réveillac, E; Robinet, T; Bosc, P; Tsukamoto, K; Feunteun, E; Berrebi, P. "Ocean currents
drive secondary contact between Anguilla marmorata populations in the Indian Ocean". Marine Ecology Progress Series
379 (2009): 267-278. http://dx.doi.org/10.3354/meps07895.
10.3354/meps07895
- Robinet, T.; Réveillac, E.; Kuroki, M.; Aoyama, J.; Tsukamoto, K.; Rabenevanana, M. W.; Valade, P.; et al. "New clues for
freshwater eels (Anguilla spp.) migration routes to eastern Madagascar and surrounding islands". Marine Biology 154
3 (2008): 453-463. http://dx.doi.org/10.1007/s00227-008-0938-7.
10.1007/s00227-008-0938-7
- Gagnaire, P. A.; Tsukamoto, K.; Aoyama, J.; Minegishi, Y.; Valade, P.; Berrebi, P.. "RFLP and semi-multiplex PCR-based identification
of four eel species from the south-western Indian Ocean region". Journal of Fish Biology 71 sb (2007): 279-287. http://dx.doi.org/10.1111/j.1095-8649.2007.01605.x.
10.1111/j.1095-8649.2007.01605.x
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