???global.info.a_carregar???
Cristina P. Vieira complete are PhD in 2001 in the field of Population genetics, at the University of Edinburgh.She is the Principal Investigator of the Evolutionary Biology Group at IBMC since 2011. She is an Associated Researcher at the i3s Phenotypic Evolution Group . She is an expert in Population genetics, Genomics, Transcriptomics, and Bioinformatics. She studies co-evolution at the molecular level using two model systems: the evolution of polyQ proteins causing degenerative diseases and the gametophytic self-incompatibility. She has 83 scientific contributions indexed in Scopus hold 1189 citations from 839 different documents (h-index=21; March 2022). She has developed several Bioinformatic tools for the efficient retrieval and processing of high quality sequence data, large scale analyses of positively selected amino acid sites, Web application tools to compare the protein interactions, and Docker images for bioinformatic software. She has supervised /co- supervised 4 PhD theses, 16 MSc dissertations and more than 24 undergrad students. She as participated in 11 Projects, being the Principal investigator in 4 .
Ler resumo completo ↓
Identificação

Identificação pessoal

Nome completo
Cristina Alexandra Gonçalves Paula Vieira

Nomes de citação

  • Vieira, Cristina
  • Cristina P. Vieira
  • Vieira C. P.

Identificadores de autor

Ciência ID
471D-6B4E-2FCF
ORCID iD
0000-0002-7139-2107

Endereços de correio eletrónico

  • cgvieira@ibmc.up.pt (Profissional)

Telefones

Telefone
  • 22 607 490 Ext.: 6135 (Profissional)

Moradas

  • R. Alfredo Allen 208, 4200-135, Porto, Porto, Portugal (Profissional)

Websites

Domínios de atuação

  • Ciências Naturais - Ciências Biológicas - Fitologia
  • Ciências Exatas - Ciências da Computação e da Informação - Bioinformática
  • Ciências Médicas e da Saúde - Medicina Básica - Genética Humana

Idiomas

Idioma Conversação Leitura Escrita Compreensão Peer-review
Inglês Utilizador proficiente (C2) Utilizador proficiente (C2) Utilizador proficiente (C2) Utilizador proficiente (C2) Utilizador proficiente (C2)
Português (Idioma materno)
Formação
Grau Classificação
2001
Concluído
 Genética populacional e evolução molecular (Doutoramento)
The University of Edinburgh, Reino Unido
"Population genetic studies of the S-locus gene family and other loci in self-compatible and self-incompatible populations of the plant Antirrhinum " (TESE/DISSERTAÇÃO)
 Aproved with distinction
1990
Concluído
 Biologia- Ramo Educacional (Licenciatura)
Universidade do Porto Faculdade de Ciências, Portugal
Percurso profissional

Ciência

Categoria Profissional
Instituição de acolhimento 		Empregador
2018/08/01 - Atual Investigador Auxiliar (carreira) (Investigação) Universidade do Porto Instituto de Investigação e Inovação em Saúde, Portugal
2011/02/17 - Atual Investigador principal (carreira) (Investigação) Universidade do Porto Instituto de Biologia Molecular e Celular, Portugal
Universidade do Porto Instituto de Biologia Molecular e Celular, Portugal
2001/02/11 - 2004/07/31 Pós-doutorado (Investigação) Fundação para a Ciência e a Tecnologia, Portugal
Universidade do Porto Instituto de Biologia Molecular e Celular, Portugal
Projetos

Bolsa

Designação Financiadores
2023/01/01 - 2025/12/31 TARGET: Translating Acomys Regenerative Capacity
Santa Casa
Investigador
Santa Casa da Misericórdia de Lisboa
Em curso
2021/11/01 - 2023 Dissecting the mechanisms underlying tension-driven axon growth
EXPL/BIA-CEL/0717/2021
Investigador
Fundação para a Ciência e a Tecnologia
Em curso
2018 - 2020 Biodata.pt - Infraestrutura Portuguesa de Dados Biológicos (candidatura 022231 - Portugal 2020)
022231 - Portugal 2020
Universidade do Porto Instituto de Biologia Molecular e Celular, Portugal
 Fundação para a Ciência e a Tecnologia
Em curso
2016 - 2019 Porto Neurosciences and Neurologic Disease Research Initiative at I3S
Norte-01-0145-FEDER-000008
 Comissao de Coordenacao e Desenvolvimento Regional do Norte
2015 - 2018 European Drosophila Population Genomics Network (DrosEU). ESEB Special Topic Networks
ESEB_001
Universidade do Porto Instituto de Biologia Molecular e Celular, Portugal
 European Society for Evolutionary Biology
2013/05 - 2015/09 Co-evolution of the S-RNase and multiple SFBB genes in Pyrinae gametophytic self-incompatibility
Provided by PTCRIS: 130383
Investigador responsável
Fundação para a Ciência e a Tecnologia, I.P.
2010/06/01 - 2013/11/30 Can polymorphism in the same set of genes explain within-species variation in life-history traits in divergent species?
info:eu-repo/grantAgreement/FCT/5876-PPCDTI/99933/PT
 Fundação para a Ciência e a Tecnologia
2010/05 - 2013/09 RNase gametophytic self-incompatibility evolution: characterization of the S-RNase gene in Fabaceae, Rhamnaceae and Rubiaceae
Provided by PTCRIS: 100616
Investigador responsável
Fundação para a Ciência e a Tecnologia, I.P.
2008/04 - 2011/09 The evolution of ecologically relevant genes
Provided by PTCRIS: 66765
 Fundação para a Ciência e a Tecnologia, I.P.
2005/04 - 2008/06 Gametophytic self-incompatibility: a model system to study molecular co-evolution
Provided by PTCRIS: 59887
Investigador responsável
Fundação para a Ciência e a Tecnologia, I.P.
2005/04 - 2008/03 Determining the rate of adaptive evolution in Drosophila: the X/4 fusion of D. americana
Provided by PTCRIS: 59399
 Fundação para a Ciência e a Tecnologia, I.P.
2003/10/01 - 2007/03/31 Gametophytic self-incompatibility: Molecular population genetics and evolutionary analyses of Prunus spinosa (Rosaceae)
info:eu-repo/grantAgreement/FCT/POCI/44800/PT
Investigador responsável
Universidade do Porto Instituto de Biologia Molecular e Celular, Portugal
 Fundação para a Ciência e a Tecnologia
2002/04/01 - 2005/09/30 Identification and Characterization of the Regulatory Elements of WINGLESS, the Drosophila homologue of the proto-oncogene Wnt-1.
info:eu-repo/grantAgreement/FCT/POCI/37402/PT
 Fundação para a Ciência e a Tecnologia, I.P.
2002/01/01 - 2005/06/30 Molecular evolution of behavioural genes in the virilis group of Drosophila
info:eu-repo/grantAgreement/FCT/POCI/37421/PT
Universidade do Porto Instituto de Biologia Molecular e Celular, Portugal
 Fundação para a Ciência e a Tecnologia
Produções

Publicações

Artigo em revista
  1. Roque, Jéssica; Brito, Ângela; Rocha, Mariana; Pissarra, João; Nunes, Telma; Bessa, Márcia; Vieira, Jorge; et al. "Isolation and characterization of soil cyanobacteria and microalgae and evaluation of their potential as plant biostimulants". Plant and Soil 493 1-2 (2023): 115-136. http://dx.doi.org/10.1007/s11104-023-06217-x.
    10.1007/s11104-023-06217-x
  2. Sousa e Silva, Rita; Sousa, André Dias; Vieira, Jorge; Vieira, Cristina P.. "The Josephin domain (JD) containing proteins are predicted to bind to the same interactors: Implications for spinocerebellar ataxia type 3 (SCA3) studies using Drosophila melanogaster mutants". Frontiers in Molecular Neuroscience 16 (2023): http://dx.doi.org/10.3389/fnmol.2023.1140719.
    10.3389/fnmol.2023.1140719
  3. Sousa, André; Rocha, Sara; Vieira, Jorge; Reboiro-Jato, Miguel; López-Fernández, Hugo; Vieira, Cristina P.. "On the identification of potential novel therapeutic targets for spinocerebellar ataxia type 1 (SCA1) neurodegenerative disease using EvoPPI3". Journal of Integrative Bioinformatics 0 0 (2023): http://dx.doi.org/10.1515/jib-2022-0056.
    10.1515/jib-2022-0056
  4. Duque, Pedro; Vieira, Cristina P.; Vieira, Jorge. "Advances in Novel Animal Vitamin C Biosynthesis Pathways and the Role of Prokaryote-Based Inferences to Understand Their Origin". Genes 13 10 (2022): 1917. http://dx.doi.org/10.3390/genes13101917.
    10.3390/genes13101917
  5. Soares, Ricardo; Vieira, Cristina P.; Vieira, Jorge. "Predictive Models of within- and between-Species SARS-CoV-2 Transmissibility". Viruses 14 7 (2022): 1565. http://dx.doi.org/10.3390/v14071565.
    10.3390/v14071565
  6. Duque, Pedro; Vieira, Cristina P.; Bastos, Bárbara; Vieira, Jorge. "The evolution of vitamin C biosynthesis and transport in animals". BMC Ecology and Evolution 22 1 (2022): http://dx.doi.org/10.1186/s12862-022-02040-7.
    10.1186/s12862-022-02040-7
  7. Brito, Ângela; Rocha, Mariana; Kaštovský, Jan; Vieira, Jorge; Vieira, Cristina P.; Ramos, Vitor; Correia, Manuel; et al. "A new cyanobacterial species with a protective effect on lettuce grown under salinity stress: Envisaging sustainable agriculture practices". Journal of Applied Phycology (2022): http://dx.doi.org/10.1007/s10811-022-02692-4.
    10.1007/s10811-022-02692-4
  8. Nogueira-Rodrigues, Joana; Leite, Sérgio C.; Pinto-Costa, Rita; Sousa, Sara C.; Luz, Liliana L.; Sintra, Maria A.; Oliveira, Raquel; et al. "Rewired glycosylation activity promotes scarless regeneration and functional recovery in spiny mice after complete spinal cord transection". Developmental Cell 57 4 (2022): 440-450.e7. http://dx.doi.org/10.1016/j.devcel.2021.12.008.
    10.1016/j.devcel.2021.12.008
  9. Kapun, Martin; Nunez, Joaquin C B; Bogaerts-Márquez, María; Murga-Moreno, Jesús; Paris, Margot; Outten, Joseph; Coronado-Zamora, Marta; et al. "Drosophila Evolution over Space and Time (DEST): A New Population Genomics Resource". Molecular Biology and Evolution 38 12 (2021): 5782-5805. http://dx.doi.org/10.1093/molbev/msab259.
    10.1093/molbev/msab259
  10. Vieira, J.; Pimenta, J.; Gomes, A.; Laia, J.; Rocha, S.; Heitzler, P.; Vieira, C. P.. "The identification of the Rosa S-locus and implications on the evolution of the Rosaceae gametophytic self-incompatibility systems". Scientific Reports 11 1 (2021): http://dx.doi.org/10.1038/s41598-021-83243-8.
    10.1038/s41598-021-83243-8
  11. Wallace, Megan A; Coffman, Kelsey A; Gilbert, Clément; Ravindran, Sanjana; Albery, Gregory F; Abbott, Jessica; Argyridou, Eliza; et al. "The discovery, distribution, and diversity of DNA viruses associated with Drosophila melanogaster in Europe". Virus Evolution 7 1 (2021): http://dx.doi.org/10.1093/ve/veab031.
    10.1093/ve/veab031
  12. Reis, Micael; Wiegleb, Gordon; Claude, Julien; Lata, Rodrigo; Horchler, Britta; Ha, Ngoc-Thuy; Reimer, Christian; et al. "Multiple loci linked to inversions are associated with eye size variation in species of the Drosophila virilis phylad". Scientific Reports 10 1 (2020): http://dx.doi.org/10.1038/s41598-020-69719-z.
    10.1038/s41598-020-69719-z
  13. Brito, Ângela; Vieira, Jorge; Vieira, Cristina P.; Zhu, Tao; Leão, Pedro N.; Ramos, Vitor; Lu, Xuefeng; et al. "Comparative Genomics Discloses the Uniqueness and the Biosynthetic Potential of the Marine Cyanobacterium Hyella patelloides". Front Microbiol 11 (2020):
    Publicado • 10.3389/fmicb.2020.01527
  14. Kapun, Martin; Barrón, Maite G; Staubach, Fabian; Obbard, Darren J; Wiberg, R Axel W; Vieira, Jorge; Goubert, Clément; et al. "Genomic Analysis of European Drosophila melanogaster Populations Reveals Longitudinal Structure, Continent-Wide Selection, and Previously Unknown DNA Viruses". Molecular Biology and Evolution 37 9 (2020): 2661-2678. http://dx.doi.org/10.1093/molbev/msaa120.
    10.1093/molbev/msaa120
  15. Sousa, Jeremy; Cá, Baltazar; Maceiras, Ana Raquel; Simões-Costa, Luisa; Fonseca, Kaori L.; Fernandes, Ana Isabel; Ramos, Angélica; et al. "Mycobacterium tuberculosis associated with severe tuberculosis evades cytosolic surveillance systems and modulates IL-1ß production". Nature Communications 11 1 (2020): 1949. http://dx.doi.org/10.1038/s41467-020-15832-6.
    10.1038/s41467-020-15832-6
  16. Lopez-Fernandez, Hugo; Duque, Pedro; Vazquez, Noe; Fdez-Riverola, Florentino; Reboiro-Jato, Miguel; Vieira, Cristina P.; Vieira, Jorge. "SEDA: a Desktop Tool Suite for FASTA Files Processing". IEEE/ACM Transactions on Computational Biology and Bioinformatics (2020): 1-1. http://dx.doi.org/10.1109/tcbb.2020.3040383.
    10.1109/tcbb.2020.3040383
  17. Stephen T. Musasa; Arnold B. Mashingaidze; Robert Musundire; Ana A. R. M. Aguiar; Jorge Vieira; Cristina P. Vieira. "Fruit fly identification, population dynamics and fruit damage during fruiting seasons of sweet oranges in Rusitu Valley, Zimbabwe". Scientific Reports (2019): https://doi.org/10.1038/s41598-019-50001-w.
    10.1038/s41598-019-50001-w
  18. Sara Rocha; Jorge Vieira; Noé Vázquez; Hugo López-Fernández; Florentino Fdez-Riverola; Miguel Reboiro-Jato; André D. Sousa; Cristina P. Vieira. "ATXN1 N-terminal region explains the binding differences of wild-type and expanded forms". BMC Medical Genomics (2019): https://doi.org/10.1186/s12920-019-0594-4.
    10.1186/s12920-019-0594-4
  19. Vieira, Jorge; Rocha, Sara; Vázquez, Noé; López-Fernández, Hugo; Fdez-Riverola, Florentino; Reboiro-Jato, Miguel; Vieira, Cristina P.. "Predicting Specificities Under the Non-self Gametophytic Self-Incompatibility Recognition Model". Frontiers in Plant Science 10 (2019): http://dx.doi.org/10.3389/fpls.2019.00879.
    10.3389/fpls.2019.00879
  20. Henriques, Sílvia F.; Duque, Pedro; López-Fernández, Hugo; Vázquez, Noé; Fdez-Riverola, Florentino; Reboiro-Jato, Miguel; Vieira, Cristina P.; Vieira, Jorge. "Multiple independent L-gulonolactone oxidase (GULO) gene losses and vitamin C synthesis reacquisition events in non-Deuterostomian animal species". BMC Evolutionary Biology 19 1 (2019): http://dx.doi.org/10.1186/s12862-019-1454-8.
    10.1186/s12862-019-1454-8
  21. Mota, Rita; Alves, Marianne; Vieira, Cristina P.; Vieira, Jorge; Tamagnini, Paula; Saraiva, Aurélia. "Didymozoids in Muscle of Atlantic Chub Mackerel (Scomber colias)". Acta Parasitologica 64 2 (2019): 308-315. http://dx.doi.org/10.2478/s11686-019-00049-5.
    10.2478/s11686-019-00049-5
  22. Vázquez, Noé; López-Fernández, Hugo; Vieira, Cristina P.; Fdez-Riverola, Florentino; Vieira, Jorge; Reboiro-Jato, Miguel. "BDBM 1.0: A Desktop Application for Efficient Retrieval and Processing of High-Quality Sequence Data and Application to the Identification of the Putative Coffea S-Locus". Interdisciplinary Sciences: Computational Life Sciences 11 1 (2019): 57-67. http://dx.doi.org/10.1007/s12539-019-00320-3.
    10.1007/s12539-019-00320-3
  23. Vázquez, Noé; Rocha, Sara; López-Fernández, Hugo; Torres, André; Camacho, Rui; Fdez-Riverola, Florentino; Vieira, Jorge; Vieira, Cristina P.; Reboiro-Jato, Miguel. "EvoPPI 1.0: a Web Platform for Within- and Between-Species Multiple Interactome Comparisons and Application to Nine PolyQ Proteins Determining Neurodegenerative Diseases". Interdisciplinary Sciences: Computational Life Sciences 11 1 (2019): 45-56. http://dx.doi.org/10.1007/s12539-019-00317-y.
    10.1007/s12539-019-00317-y
  24. López-Fernández, Hugo; Duque, Pedro; Henriques, Sílvia; Vázquez, Noé; Fdez-Riverola, Florentino; Vieira, Cristina P.; Reboiro-Jato, Miguel; Vieira, Jorge. "Bioinformatics Protocols for Quickly Obtaining Large-Scale Data Sets for Phylogenetic Inferences". Interdisciplinary Sciences: Computational Life Sciences 11 1 (2018): 1-9. http://dx.doi.org/10.1007/s12539-018-0312-5.
    10.1007/s12539-018-0312-5
  25. Reis, Micael; Vieira, Cristina P; Lata, Rodrigo; Posnien, Nico; Vieira, Jorge. "Origin and Consequences of Chromosomal Inversions in thevirilisGroup ofDrosophila". Genome Biology and Evolution 10 12 (2018): 3152-3166. http://dx.doi.org/10.1093/gbe/evy239.
    10.1093/gbe/evy239
  26. Vázquez N; Vieira CP; Amorim BSR; Torres A; López-Fernández H; Fdez-Riverola F; Sousa JLR; Reboiro-Jato M; Vieira J. "Large Scale Analyses and Visualization of Adaptive Amino Acid Changes Projects.". Interdisciplinary sciences, computational life sciences (2018): http://europepmc.org/abstract/med/29383564.
    10.1007/s12539-018-0282-7
  27. Pratas MI; Aguiar B; Vieira J; Nunes V; Teixeira V; Fonseca NA; Iezzoni A; van Nocker S; Vieira CP. "Inferences on specificity recognition at the Malus×domestica gametophytic self-incompatibility system.". Scientific reports (2018): http://europepmc.org/abstract/med/29379047.
    10.1038/s41598-018-19820-1
  28. Vázquez N; Rocha S.; López-Fernández H; Torres A.; Camacho, R.; Fdez-Riverola F; Vieira J; Vieira C. P.; Reboiro-Jato, M.. "EvoPPI: A Web Application to Compare Protein-Protein Interactions (PPIs) from Different Databases and Species". Practical Applications of Computational Biology and Bioinformatics, 12th International Conference. PACBB2018. Advances in Intelligent Systems and Computing 803 (2018):
  29. López-Fernández, H.; Duque, P.; Henriques S.; Vázquez, N.; Fdez-Riverola F; Vieira C. P.; Reboiro-Jato M; Vieira J. "A Bioinformatics Protocol for Quickly Creating Large-Scale Phylogenetic Trees". Practical Applications of Computational Biology and Bioinformatics, 12th International Conference. PACBB2018. Advances in Intelligent Systems and Computing 803 (2018):
  30. Brito, Â.; Ramos, V.; Mota, R.; Lima, S.; Santos, A.; Vieira, J.; Vieira, C.P.; et al. "Description of new genera and species of marine cyanobacteria from the Portuguese Atlantic coast". Molecular Phylogenetics and Evolution 111 (2017): 18-34. http://www.scopus.com/inward/record.url?eid=2-s2.0-85015948750&partnerID=MN8TOARS.
    10.1016/j.ympev.2017.03.006
  31. Reis, M.; Silva, A.C.; Vieira, C.P.; Vieira, J.. "The Drosophila melanogaster Muc68E mucin gene influences adult size, starvation tolerance, and cold recovery". G3: Genes, Genomes, Genetics 6 7 (2016): 1841-1851. http://www.scopus.com/inward/record.url?eid=2-s2.0-84978388450&partnerID=MN8TOARS.
    10.1534/g3.116.029934
  32. Aguiar, B.; Vieira, J.; Cunha, A.E.; Fonseca, N.A.; Iezzoni, A.; Van Nocker, S.; Vieira, C.P.. "Convergent evolution at the gametophytic self-incompatibility system in Malus and Prunus". PLoS ONE 10 5 (2015): http://www.scopus.com/inward/record.url?eid=2-s2.0-84930639901&partnerID=MN8TOARS.
    10.1371/journal.pone.0126138
  33. Aguiar, B.; Vieira, J.; Cunha, A.E.; Vieira, C.P.. "No evidence for Fabaceae Gametophytic self-incompatibility being determined by Rosaceae, Solanaceae, and Plantaginaceae S-RNase lineage genes". BMC Plant Biology 15 1 (2015): http://www.scopus.com/inward/record.url?eid=2-s2.0-84930079488&partnerID=MN8TOARS.
    10.1186/s12870-015-0497-2
  34. Reis, M.; Valer, F.B.; Vieira, C.P.; Vieira, J.. "Drosophila Americana diapausing females show features typical of young flies". PLoS ONE 10 9 (2015): http://www.scopus.com/inward/record.url?eid=2-s2.0-84946949500&partnerID=MN8TOARS.
    10.1371/journal.pone.0138758
  35. Pereira, S.B.; Mota, R.; Vieira, C.P.; Vieira, J.; Tamagnini, P.. "Phylum-wide analysis of genes/proteins related to the last steps of assembly and export of extracellular polymeric substances (EPS) in cyanobacteria". Scientific Reports 5 (2015): http://www.scopus.com/inward/record.url?eid=2-s2.0-84943302918&partnerID=MN8TOARS.
    10.1038/srep14835
  36. Sillero, N.; Reis, M.; Vieira, C.P.; Vieira, J.; Morales-Hojas, R.. "Niche evolution and thermal adaptation in the temperate species Drosophila americana". Journal of Evolutionary Biology 27 8 (2014): 1549-1561. http://www.scopus.com/inward/record.url?eid=2-s2.0-84904423388&partnerID=MN8TOARS.
    10.1111/jeb.12400
  37. Reis, M.; Páscoa, I.; Rocha, H.; Aguiar, B.; Vieira, C.P.; Vieira, J.. "Genes belonging to the insulin and ecdysone signaling pathways can contribute to developmental time, lifespan and abdominal size variation in Drosophila americana". PLoS ONE 9 1 (2014): http://www.scopus.com/inward/record.url?eid=2-s2.0-84900325167&partnerID=MN8TOARS.
    10.1371/journal.pone.0086690
  38. Aguiar, B.; Vieira, J.; Cunha, A.E.; Fonseca, N.A.; Reboiro-Jato, D.; Reboiro-Jato, M.; Fdez-Riverola, F.; Raspé, O.; Vieira, C.P.. "Patterns of evolution at the gametophytic self-incompatibility Sorbus aucuparia (Pyrinae) S pollen genes support the non-self recognition by multiple factors model". Journal of Experimental Botany 64 8 (2013): 2423-2434. http://www.scopus.com/inward/record.url?eid=2-s2.0-84877995131&partnerID=MN8TOARS.
    10.1093/jxb/ert098
  39. Fonseca, N.A.; Morales-Hojas, R.; Reis, M.; Rocha, H.; Vieira, C.P.; Nolte, V.; Schlötterer, C.; Vieira, J.. "Drosophila americana as a model species for comparative studies on the molecular basis of phenotypic variation". Genome Biology and Evolution 5 4 (2013): 661-679. http://www.scopus.com/inward/record.url?eid=2-s2.0-84876523283&partnerID=MN8TOARS.
    10.1093/gbe/evt037
  40. Araújo, A.R.; Reis, M.; Rocha, H.; Aguiar, B.; Morales-Hojas, R.; Macedo-Ribeiro, S.; Fonseca, N.A.; et al. "The Drosophila melanogaster methuselah Gene: A Novel Gene with Ancient Functions". PLoS ONE 8 5 (2013): http://www.scopus.com/inward/record.url?eid=2-s2.0-84877819189&partnerID=MN8TOARS.
    10.1371/journal.pone.0063747
  41. Costa, M.; Cruz, E.; Barton, J.C.; Thorstensen, K.; Morais, S.; Da Silva, B.M.; Pinto, J.P.; et al. "Effects of highly conserved major histocompatibility complex (MHC) extended haplotypes on iron and low CD8+T lymphocyte phenotypes in HFE C282Y homozygous hemochromatosis patients from three geographically distant areas". PLoS ONE 8 11 (2013): http://www.scopus.com/inward/record.url?eid=2-s2.0-84891891855&partnerID=MN8TOARS.
    10.1371/journal.pone.0079990
  42. Fonseca, N.A.; Vieira, C.P.; Schlötterer, C.; Vieira, J.. "The DAIBAM MITE element is involved in the origin of one fixed and two polymorphic Drosophila virilis phylad inversions". Fly 6 2 (2012): 71-74. http://www.scopus.com/inward/record.url?eid=2-s2.0-84862502852&partnerID=MN8TOARS.
    10.4161/fly.19423
  43. Reboiro-Jato, D.; Reboiro-Jato, M.; Fdez-Riverola, F.; Vieira, C.P.; Fonseca, N.A.; Vieira, J.. "ADOPS--Automatic Detection Of Positively Selected Sites.". Journal of integrative bioinformatics 9 3 (2012): http://www.scopus.com/inward/record.url?eid=2-s2.0-84875034333&partnerID=MN8TOARS.
  44. Reis, M.; Vieira, C.P.; Morales-Hojas, R.; Aguiar, B.; Rocha, H.; Schlötterer, C.; Vieira, J.. "A comparative study of the short term cold resistance response in distantly related Drosophila species: The role of regucalcin and Frost". PLoS ONE 6 10 (2011): http://www.scopus.com/inward/record.url?eid=2-s2.0-80053451103&partnerID=MN8TOARS.
    10.1371/journal.pone.0025520
  45. Morales-Hojas, R.; Reis, M.; Vieira, C.P.; Vieira, J.. "Resolving the phylogenetic relationships and evolutionary history of the Drosophila virilis group using multilocus data". Molecular Phylogenetics and Evolution 60 2 (2011): 249-258. http://www.scopus.com/inward/record.url?eid=2-s2.0-79957916794&partnerID=MN8TOARS.
    10.1016/j.ympev.2011.04.022
  46. Reis, M.; Sousa-Guimarães, S.; Vieira, C.P.; Sunkel, C.E.; Vieira, J.. "Drosophila genes that affect meiosis duration are among the meiosis related genes that are more often found duplicated". PLoS ONE 6 3 (2011): http://www.scopus.com/inward/record.url?eid=2-s2.0-79952523294&partnerID=MN8TOARS.
    10.1371/journal.pone.0017512
  47. MacEdo, M.F.; Porto, G.; Costa, M.; Vieira, C.P.; Rocha, B.; Cruz, E.. "Low numbers of CD8 + T lymphocytes in hereditary haemochromatosis are explained by a decrease of the most mature CD8 + effector memory T cells". Clinical and Experimental Immunology 159 3 (2010): 363-371. http://www.scopus.com/inward/record.url?eid=2-s2.0-74549195700&partnerID=MN8TOARS.
    10.1111/j.1365-2249.2009.04066.x
  48. Vieira, J.; Ferreira, P.G.; Aguiar, B.; Fonseca, N.A.; Vieira, C.P.. "Evolutionary patterns at the RNase based gametophytic self - Incompatibility system in two divergent Rosaceae groups (Maloideae and Prunus)". BMC Evolutionary Biology 10 1 (2010): http://www.scopus.com/inward/record.url?eid=2-s2.0-77953954949&partnerID=MN8TOARS.
    10.1186/1471-2148-10-200
  49. Vieira, J.; Vieira, C.P.. "On the identification of human selected loci in grapevines". Heredity 104 4 (2010): 327-328. http://www.scopus.com/inward/record.url?eid=2-s2.0-77950069146&partnerID=MN8TOARS.
    10.1038/hdy.2009.178
  50. Seabra, A.R.; Vieira, C.P.; Cullimore, J.V.; Carvalho, H.G.. "Medicago truncatula contains a second gene encoding a plastid located glutamine synthetase exclusively expressed in developing seeds". BMC Plant Biology 10 (2010): http://www.scopus.com/inward/record.url?eid=2-s2.0-77955705934&partnerID=MN8TOARS.
    10.1186/1471-2229-10-183
  51. Santos, J.S.; Fonseca, N.A.; Vieira, C.P.; Vieira, J.; Casares, F.. "Phylogeny of the teashirt-related zinc finger (tshz) gene family and analysis of the developmental expression of tshz2 and tshz3b in the zebrafish". Developmental Dynamics 239 3 (2010): 1010-1018. http://www.scopus.com/inward/record.url?eid=2-s2.0-77149154313&partnerID=MN8TOARS.
    10.1002/dvdy.22228
  52. Fonseca, N.A.; Vieira, C.P.; Vieira, J.. "Gene classification based on amino acid motifs and residues: The DLX (distal-less) test case". PLoS ONE 4 6 (2009): http://www.scopus.com/inward/record.url?eid=2-s2.0-66749114304&partnerID=MN8TOARS.
    10.1371/journal.pone.0005748
  53. Morales-Hojas, R.; Vieira, C.P.; Reis, M.; Vieira, J.. "Comparative analysis of five immunity-related genes reveals different levels of adaptive evolution in the virilis and melanogaster groups of Drosophila". Heredity 102 6 (2009): 573-578. http://www.scopus.com/inward/record.url?eid=2-s2.0-67349177764&partnerID=MN8TOARS.
    10.1038/hdy.2009.11
  54. Fonseca, N.A.; Costa, V.S.; Camacho, R.; Vieira, C.; Vieira, J.. "Partitional clustering of protein sequences - An inductive logic programming approach". Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 5518 LNCS PART 2 (2009): 1001-1004. http://www.scopus.com/inward/record.url?eid=2-s2.0-77952573704&partnerID=MN8TOARS.
    10.1007/978-3-642-02481-8_152
  55. Vieira, J.; Fonseca, N.A.; Vieira, C.P.. "RNase-based gametophytic self-incompatibility evolution: Questioning the hypothesis of multiple independent recruitments of the s-pollen gene". Journal of Molecular Evolution 69 1 (2009): 32-41. http://www.scopus.com/inward/record.url?eid=2-s2.0-67650330593&partnerID=MN8TOARS.
    10.1007/s00239-009-9249-y
  56. Reis, M.; Vieira, C.P.; Morales-Hojas, R.; Vieira, J.. "An old bilbo-like non-LTR retroelement insertion provides insight into the relationship of species of the virilis group". Gene 425 1-2 (2008): 48-55. http://www.scopus.com/inward/record.url?eid=2-s2.0-53149089756&partnerID=MN8TOARS.
    10.1016/j.gene.2008.08.010
  57. Vieira, J.; Santos, R.A.M.; Habu, T.; Tao, R.; Vieira, C.P.. "The Prunus self-incompatibility locus (S locus) is seldom rearranged". Journal of Heredity 99 6 (2008): 657-660. http://www.scopus.com/inward/record.url?eid=2-s2.0-54249133436&partnerID=MN8TOARS.
    10.1093/jhered/esn063
  58. Fonseca, N.A.; Vieira, C.P.; Holland, P.W.H.; Vieira, J.. "Protein evolution of ANTP and PRD homeobox genes". BMC Evolutionary Biology 8 1 (2008): http://www.scopus.com/inward/record.url?eid=2-s2.0-48449098788&partnerID=MN8TOARS.
    10.1186/1471-2148-8-200
  59. Vieira, J.; Fonseca, N.A.; Vieira, C.P.. "An S-RNase-based gametophytic self-incompatibility system evolved only once in eudicots". Journal of Molecular Evolution 67 2 (2008): 179-190. http://www.scopus.com/inward/record.url?eid=2-s2.0-50249127125&partnerID=MN8TOARS.
    10.1007/s00239-008-9137-x
  60. Vieira, J.; Santos, R.A.M.; Ferreira, S.M.; Vieira, C.P.. "Inferences on the number and frequency of S-pollen gene (SFB) specificities in the polyploid Prunus spinosa". Heredity 101 4 (2008): 351-358. http://www.scopus.com/inward/record.url?eid=2-s2.0-52549097774&partnerID=MN8TOARS.
    10.1038/hdy.2008.60
  61. Vieira, J.; Teles, E.; Santos, R.A.M.; Vieira, C.P.. "Recombination at prunus S-locus region SLFL1 gene". Genetics 180 1 (2008): 483-491. http://www.scopus.com/inward/record.url?eid=2-s2.0-52549100538&partnerID=MN8TOARS.
    10.1534/genetics.108.087825
  62. Vieira, J.; Fonseca, N.A.; Santos, R.A.M.; Habu, T.; Tao, R.; Vieira, C.P.. "The number, age, sharing and relatedness of S-locus specificities in Prunus". Genetics Research 90 1 (2008): 17-26. http://www.scopus.com/inward/record.url?eid=2-s2.0-39749108886&partnerID=MN8TOARS.
    10.1017/S0016672307009044
  63. Tsukamoto, T.; Potter, D.; Tao, R.; Vieira, C.P.; Vieira, J.; Iezzoni, A.F.. "Genetic and molecular characterization of three novel S-haplotypes in sour cherry (Prunus cerasus L.)". Journal of Experimental Botany 59 11 (2008): 3169-3185. http://www.scopus.com/inward/record.url?eid=2-s2.0-49449094798&partnerID=MN8TOARS.
    10.1093/jxb/ern172
  64. Morales-Hojas, R.; Vieira, C.P.; Vieira, J.. "Inferring the evolutionary history of Drosophila americana and Drosophila novamexicana using a multilocus approach and the influence of chromosomal rearrangements in single gene analyses". Molecular Ecology 17 12 (2008): 2910-2926. http://www.scopus.com/inward/record.url?eid=2-s2.0-44849084772&partnerID=MN8TOARS.
    10.1111/j.1365-294X.2008.03796.x
  65. Vieira, J.; Morales-Hojas, R.; Santos, R.A.M.; Vieira, C.P.. "Different positively selected sites at the gametophytic self-incompatibility pistil S-RNase gene in the Solanaceae and Rosaceae (Prunus, Pyrus, and Malus)". Journal of Molecular Evolution 65 2 (2007): 175-185. http://www.scopus.com/inward/record.url?eid=2-s2.0-34548587710&partnerID=MN8TOARS.
    10.1007/s00239-006-0285-6
  66. Morales-Hojas, R.; Päällysaho, S.; Vieira, C.P.; Hoikkala, A.; Vieira, J.. "Comparative polytene chromosome maps of D. montana and D. virilis". Chromosoma 116 1 (2007): 21-27. http://www.scopus.com/inward/record.url?eid=2-s2.0-33846589303&partnerID=MN8TOARS.
    10.1007/s00412-006-0075-3
  67. Morales-Hojas, R.; Vieira, C.P.; Vieira, J.. "The evolutionary history of the transposable element Penelope in the Drosophila virilis group of species". Journal of Molecular Evolution 63 2 (2006): 262-273. http://www.scopus.com/inward/record.url?eid=2-s2.0-33746404630&partnerID=MN8TOARS.
    10.1007/s00239-005-0213-1
  68. Vieira, C.P.; Almeida, A.; Dias, J.D.; Vieira, J.. "On the location of the gene(s) harbouring the advantageous variant that maintains the X/4 fusion of Drosophila americana". Genetical Research 87 3 (2006): 163-174. http://www.scopus.com/inward/record.url?eid=2-s2.0-33745615839&partnerID=MN8TOARS.
    10.1017/S0016672306008147
  69. Nunes, M.D.S.; Santos, R.A.M.; Ferreira, S.M.; Vieira, J.; Vieira, C.P.. "Variability patterns and positively selected sites at the gametophytic self-incompatibility pollen SFB gene in a wild self-incompatible Prunus spinosa (Rosaceae) population". New Phytologist 172 3 (2006): 577-587. http://www.scopus.com/inward/record.url?eid=2-s2.0-33750012104&partnerID=MN8TOARS.
    10.1111/j.1469-8137.2006.01838.x
  70. Päällysaho, S.; Vieira, C.P.; Hoikkala, A.; Vieira, J.. "Evidence for introgression in differentiated North-American and Finnish Drosophila montana populations". Genetica 123 3 (2005): 285-293. http://www.scopus.com/inward/record.url?eid=2-s2.0-18144416228&partnerID=MN8TOARS.
    10.1007/s10709-004-5090-9
  71. Costas, J.; Pereira, P.S.; Vieira, C.P.; Pinho, S.; Vieira, J.; Casares, F.. "Dynamics and function of intron sequences of the wingless gene during the evolution of the Drosophila genus". Evolution and Development 6 5 (2004): 325-335. http://www.scopus.com/inward/record.url?eid=2-s2.0-4644220375&partnerID=MN8TOARS.
    10.1111/j.1525-142X.2004.04040.x
  72. Costas, J.; Vieira, C.P.; Casares, F.; Vieira, J.. "Genomic characterization of a repetititve motif strongly associated with developmental genes in Drosophila". BMC Genomics 4 (2003): http://www.scopus.com/inward/record.url?eid=2-s2.0-9144233713&partnerID=MN8TOARS.
    10.1186/1471-2164-4-52
  73. Vieira, C.P.; Charlesworth, D.; Vieira, J.. "Evidence for rare recombination at the gametophytic self-incompatibility locus". Heredity 91 3 (2003): 262-267. http://www.scopus.com/inward/record.url?eid=2-s2.0-0141789721&partnerID=MN8TOARS.
    10.1038/sj.hdy.6800326
  74. Vieira, C.P.; Coelho, P.A.; Vieira, J.. "Inferences on the evolutionary history of the Drosophila americana polymorphic X/4 fusion from patterns of polymorphism at the X-linked paralytic and elav genes". Genetics 164 4 (2003): 1459-1469. http://www.scopus.com/inward/record.url?eid=2-s2.0-0041817599&partnerID=MN8TOARS.
  75. Vieira, C.P.; Charlesworth, D.. "Molecular variation at the self-incompatibility locus in natural populations of the genera Antirrhinum and Misopates". Heredity 88 3 (2002): 172-181. http://www.scopus.com/inward/record.url?eid=2-s2.0-0036009855&partnerID=MN8TOARS.
    10.1038/sj.hdy.6800024
  76. Zwettler, D.; Vieira, C.P.; Schlötterer, C.. "Polymorphic microsatellites in Antirrhinum (Scrophulariaceae), a genus with low levels of nuclear sequence variability". Journal of Heredity 93 3 (2002): 217-221. http://www.scopus.com/inward/record.url?eid=2-s2.0-0036563194&partnerID=MN8TOARS.
  77. Vieira, C.P.; Charlesworth, D.. "Low diversity and divergence in the fill gene family of Antirrhinum (Scrophulariaceae)". Journal of Molecular Evolution 52 2 (2001): 171-181. http://www.scopus.com/inward/record.url?eid=2-s2.0-0035094235&partnerID=MN8TOARS.
  78. Vieira, C.P.; Charlesworth, D.. "Low rates of silent substitution in nuclear genes of two distantly related Scrophulariaceae (Antirrhinum and Verbascum)". Molecular Biology and Evolution 18 10 (2001): 1940-1951. http://www.scopus.com/inward/record.url?eid=2-s2.0-0034814766&partnerID=MN8TOARS.
    10.1093/oxfordjournals.molbev.a003734
  79. Vieira, C.P.; Vieira, J.; Charlesworth, D.. "Evolution of the cycloidea gene family in Antirrhinum and Misopates". Molecular Biology and Evolution 16 11 (1999): 1474-1483. http://www.scopus.com/inward/record.url?eid=2-s2.0-0032733828&partnerID=MN8TOARS.
    10.1093/oxfordjournals.molbev.a026059
  80. Vieira, J.; Vieira, C.P.; Hartl, D.L.; Lozovskaya, E.R.. "Factors contributing to the hybrid dysgenesis syndrome in Drosophila virilis". Genetical Research 71 2 (1998): 109-117. http://www.scopus.com/inward/record.url?eid=2-s2.0-0031873152&partnerID=MN8TOARS.
    10.1017/S001667239800322X
  81. Vieira, C.P.; Vieira, J.; Hartl, D.L.. "The evolution of small gene clusters: Evidence for an independent origin of the maltase gene cluster in Drosophila virilis and Drosophila melanogaster". Molecular Biology and Evolution 14 10 (1997): 985-993. http://www.scopus.com/inward/record.url?eid=2-s2.0-0030920456&partnerID=MN8TOARS.
    10.1093/oxfordjournals.molbev.a025715
  82. Vieira, J.; Vieira, C.P.; Hartl, D.L.; Lozovskaya, E.R.. "A framework physical map of Drosophila virilis based on P1 clones: Applications in genome evolution". Chromosoma 106 2 (1997): 99-107. http://www.scopus.com/inward/record.url?eid=2-s2.0-0030809663&partnerID=MN8TOARS.
    10.1007/s004120050229
  83. Vieira, J.; Vieira, C.P.; Hartl, D.L.; Lozovskaya, E.R.. "Discordant rates of chromosome evolution in the Drosophila virilis species group". Genetics 147 1 (1997): 223-230. http://www.scopus.com/inward/record.url?eid=2-s2.0-0030964030&partnerID=MN8TOARS.
Capítulo de livro
  1. Reboiro-Jato, Miguel; Vieira, Jorge; Rocha, Sara; Sousa, André D.; López-Fernández, Hugo; Vieira, Cristina P.. "EvoPPI 2: A Web and Local Platform for the Comparison of Protein–Protein Interaction Data from Multiple Sources from the Same and Distinct Species". In Practical Applications of Computational Biology and Bioinformatics, 16th International Conference (PACBB 2022), 101-110. Springer International Publishing, 2022.
    10.1007/978-3-031-17024-9_10
  2. López-Fernández, Hugo; Vieira, Cristina P.; Fdez-Riverola, Florentino; Reboiro-Jato, Miguel; Vieira, Jorge. "Inferences on Mycobacterium Leprae Host Immune Response Escape and Antibiotic Resistance Using Genomic Data and GenomeFastScreen". In Practical Applications of Computational Biology & Bioinformatics, 14th International Conference (PACBB 2020), 42-50. Springer International Publishing, 2020.
    10.1007/978-3-030-54568-0_5
Livro
  1. Vázquez, N.; Vieira, C.P.; Amorim, B.S.R.; Torres, A.; López-Fernández, H.; Fdez-Riverola, F.; Sousa, J.L.R.; Reboiro-Jato, M.; Vieira, J.. Automated collection and sharing of adaptive amino acid changes data. 2017.
    10.1007/978-3-319-60816-7_3
Poster em conferência
  1. M. Reboiro-Jato; J. Vieira; S. Rocha; A.D. Sousa; H. López-Fernández; C.P. Vieira. "EvoPPI 2: an updated version of a powerful Protein-Protein Interaction database aggregator and analysis platform.". Trabalho apresentado em V CINBIO Annual Meeting 2022, 2022.
  2. Ferreira P.; López-Fernández H; Duque, P.; Vieira C. P.; Reboiro-Jato M; Fdez-Riverola F; Vieira J. "Bioinformatics Docker Images". Trabalho apresentado em VIII Bioinformatic Open days, University of Braga, Braga, Portugal, 2019.
  3. Reis M.; Vieira C. P.; Lata R; Salamanca-Dìaz D; Vieira J; Posnien N.. "Evolution of eye size and head morphology between Drosophila americana and D. novamexicana". Trabalho apresentado em II Joint Congress on Evolutionary Biology,. Montpellier, France., 2018.
  4. López-Fernández H; Reboiro-Jato, M.; Vázquez M; Duque, P.; Vieira C. P.; Fdez-Riverola F; Vieira J. "Developing a standalone toolbox for processing FASTA files.". Trabalho apresentado em Portuguese Society of Genetics Annual meeting 2018. Porto, Portugal, 2018.
  5. Rocha S.; Costa I.; Guterres de Carvalho I; Camacho R.; Vieira J; Vieira C. P.. "Evolution of the polyglutamine (polyQ) wild-type (non-expanded form) protein networks, associated to human neurodegenerative diseases.". Trabalho apresentado em ESEB 2017, Groningen, Netherlands., 2017.
  6. Reis M.; Vieira C. P.; Posnien N.; Vieira J.. "Ectopic recombination between DAIBAM elements is the prevalent mode generating inversions in the virilis phylad". Trabalho apresentado em ESEB 2017, Groningen, Netherlands., 2017.
  7. Vieira C. P.; Vieira J; Aguiar B; Pratas MI; Nunes V.; Teixeira V.; Iezzoni A; vanNocker S. "Malus domestica gametophytic self-incompatibility system: players and features of the pollen component determining specificity recognition.". Trabalho apresentado em ESEB 2017., Groningen, Netherlands, 2017.
  8. Vieira J; Aguiar B; Pratas I; Nunes V.; Iezzoni A; Vieira C. P.; vanNocker S; Vieira CP. "The players of the "collaborative non-self recognition" Malus self-incompatibility system". Trabalho apresentado em 8th International Rosaceae Genomics Conference (RGC8), Angers, France, 2016.
  9. Sousa J.; Bastos HN; Osório NS; Veiga MI; Machado H.; Cardoso F.; Gaifem J; et al. "Host and Mycobacterium tuberculosis determinants of immune cells activation". Trabalho apresentado em XLII Reunião Anual da Sociedade Portuguesa de Imunologia, Oeiras, Portugal, 2016.
  10. Vieira J; Aguiar B; Pratas I.; Nunes V.; Vieira C. P.. "The players of the "collaborative non-self recognition" Malus self-incompatibility system.". Trabalho apresentado em SMBE, Vienna, Autria, 2015.
  11. Reis M.; Vieira C. P.; Lata R; Posnien N.; Vieira J.. "Evolution of eye size and head morphology between Drosophila americana and D. novamexicana". Trabalho apresentado em SMBE, Vienna, Autria, 2015.
  12. Vieira J; Aguiar B; Cunha AE; Teixeira V.; Vieira C. P.. "Fabaceae Gametophytic self-incompatibility is not determined by Rosaceae, Solanaceae, and Plantaginaceae S-RNase lineage genes". Trabalho apresentado em SMBE, Vienna, Autria, 2015.
  13. Aguiar B; Vieira J; Cunha AE; Vieira C. P.. "Pyrinae and Asteridae S-lineage genes in Fabaceae species: is gametophytic self incompatibility S-RNase based in Cytisus striatus?". Trabalho apresentado em 16th Portugaliae Genetica, Porto, Portugal, 2014.
  14. Aguiar B; Vieira J; Cunha AE; Fonseca NA.; Iezzoni A; van Nocker S; Vieira C. P.. "Genes from distinct lineages determine gametophytic self-incompatibility in Malus and Prunus". Trabalho apresentado em 16th Portugaliae Genetica, Porto, Portugal, 2014.
  15. Reis M.; Valer FB; Vieira C. P.; Vieira J. "Drosophila americana diapausing females show features typical of young flies". Trabalho apresentado em 16th Portugaliae Genetica, Porto, Portugal, 2014.
  16. Vieira J; Reis M.; Páscoa I; Rocha I.; Aguiar B; Vieira C. P.. "Polymorphism at Frost gene explains developmental time variability in Drosophila americana.". Trabalho apresentado em Congress of the European Society for Evolutionary Biology, Lisbon, 2013.
  17. Morales-Hojas R; Sillero N; Reis M.; Vieira C. P.; Vieira J. "Ecological niche evolution, phylogeography and thermal adaptation studies in Drosophila americana suggest it is a plastic species.". Trabalho apresentado em Congress of the European Society for Evolutionary Biology, Lisbon, 2013.
  18. Aguiar B; Vieira J; Cunha AE; Fonseca NA.; Reboiro-Jato D; Reboiro-Jato M; Fdez-Riverola F; Raspé O; Vieira C. P.. "The inhibition of the S-RNase cytoxicity in Rosaceae: the Prunus 'one Spollen gene' model and the Pyrinae ‘non-self recognition by multiple Spollen factors’ model". Trabalho apresentado em XXXVI Jornadas Portuguesas de Genética, Porto, 2013.
  19. Aguiar B; Vieira J; Cunha A.; Fonseca N.; Vieira C. P.. "A working model for GSI evolution in Rosaceae". Trabalho apresentado em Trends In Biodiversity and Evolution- TIBE 2012,, CIBIO, Vairão, 2012.
  20. Reboiro-Jato D; Reboiro-Jato M; Fdez-Riverola F; Vieira C. P.; Fonseca NA.; Vieira J. "ADOPS, a pipeline for phylogenetic analyses and detection of positively selected sites". Trabalho apresentado em Trends In Biodiversity and Evolution- TIBE 2012,, CIBIO, Vairão, 2012.
  21. Reis M.; Araújo AR.; Aguiar B; Rocha, H.; Vieira C. P.; Vieira J.. "Amino acid polymorphism at Drosophila methuselah-like genes is associated with lifespan differences". Trabalho apresentado em Society for Molecular Biology and Evolution, SMBE 2012, Dublin, 2012.
  22. Morales-Hojas, R.; Reis M.; Vieira C. P.; Vieira J.. "The evolution of cold tolerance in Drosophila: from phylogenetics to gene expression. Society for Molecular Biology and Evolution". Trabalho apresentado em Society for Molecular Biology and Evolution, SMBE 2012, Dublin, 2012.
  23. Aguiar B; Vieira J; Fonseca N.; Raspé O; Vieira C. P.. "The inhibition of the S-RNase cytoxicity in Rosaceae: the Prunus 'one S-pollen gene' model and the Pyrinae 'non-self recognition by multiple S-pollen factors' model.". Trabalho apresentado em Society for Molecular Biology and Evolution, SMBE 2012, Dublin, 2012.
  24. Aguiar B; Vieira J; Cunha A.; Fonseca N.; Vieira C. P.. "The fate of S-RNase gene duplications in Rosaceae". Trabalho apresentado em Society for Molecular Biology and Evolution, SMBE 2012, Dublin, 2012.
  25. Reis M.; Morales-Hojas R; Vieira C. P.; Vieira J.. "The evolution of cold tolerance in Drosophila: from phylogenetics to gene expression.". Trabalho apresentado em XXXVI Jornadas Portuguesas de Genética, Porto, 2012.
  26. Marques AT.; Vieira C. P.; Pereira PJB. "Expression and Purification of Prunus S-specificity gene products involved in S-RNase-based self-incompatibility. Production and characterization of macromolecular complexes". Trabalho apresentado em PCMC 2012, Strasbourg, 2012.
  27. Aguiar B; Vieira J; Vieira C. P.. "The fate of S-RNase gene duplications across 120 million years of evolution". Trabalho apresentado em Trends In Biodiversity and Evolution-TIBE 2011, Vairão, Portugal, 2011.
  28. Rocha H.; Reis, M.; Vieira C. P.; Vieira J. "Assessing natural variation in Drosophila longevity". Trabalho apresentado em Trends In Biodiversity and Evolution-TIBE 2011, Vairão, 2011.
  29. Reis M.; Vieira C. P.; Morales-Hojas R; Aguiar B; Rocha, H.; Schlötterer C; Vieira, J.. "The genetic basis of cold tolerance within and between Drosophila species.". Trabalho apresentado em Trends In Biodiversity and Evolution-TIBE 2011, Vairão, Portugal, 2011.
  30. Aguiar B; Vieira J; Fonseca NA.; Raspé O; Vieira C. P.. "How the gamethophytic self-incompatibility system works with multiple pollen genes.". Trabalho apresentado em 13th Congress of the European Society for Evolutionary Biology, Tübingen, Germany, 2011.
  31. Reis M.; Araújo AR.; Aguiar B; Rocha H; Vieira C. P.; Vieira J.. "Amino acid polymorphism at Drosophila methuselah-like genes is associated with lifespan differences.". Trabalho apresentado em 13th Congress of the European Society for Evolutionary Biology, Tubingen, 2011.
  32. Aguiar B; Vieira J; Vieira C. P.. "The fate of an S-RNase duplicated genes in Medicago truncatula". Trabalho apresentado em XXXVI Jornadas Portuguesas de Genética, Coimbra, 2011.
  33. Reis M.; Araújo AR.; Aguiar B; Rocha H.; Vieira C. P.; Vieira J. "Mathuselah-like variability explains lifespan differences in divergent insect species". Trabalho apresentado em XXXVI Jornadas Portuguesas de Genética, Coimbra, 2011.
  34. Rocha H.; Reis, M.; Vieira C. P.; Vieira J. "Drosophila lifespan evolution". Trabalho apresentado em XXXVI Jornadas Portuguesas de Genética, Coimbra, 2011.
  35. Aguiar B; Vieira J; Fonseca NA.; Raspé O; Vieira C. P.. "Multiple pollen gametophytic self-incompatibility genes in Sorbus aucuparia (Maloideae): evidence and implications.". Trabalho apresentado em International Congress on Sexual Plant Reproduction, Bristol, 2010.
  36. Morales-Hojas R; Reis M.; Vieira C. P.; Vieira J.. ". Is the virilis-repleta radiation of Drosophila associated with an increase in the speciation rate?". Trabalho apresentado em Annual Meeting of the Society for Molecular Biology and Evolution. Lyon, 2010.
  37. Reis M.; Vieira C. P.; Morales-Hojas R; Aguiar B; Schlötterer C; Vieira J.. "The molecular basis of cold resistance is partially conserved in the distantly related Drosophila species". Trabalho apresentado em SMBE 2010. Lyon, 2010.
  38. Reis M.; Vieira C. P.; Morales-Hojas R; Aguiar B; Schlötterer C; Vieira J.. "The molecular basis of cold resistance variation is partially conserved in the distantly related species D. melanogaster and D. americana". Trabalho apresentado em XXXV Jornadas Portuguesas de Genética, Braga, 2010.
  39. Costa D.; Vieira C. P.; Vieira J; Fonseca NA.. "Identifying exclusive patterns in unaligned sets of sequences.". Trabalho apresentado em 13th Portugaliae Genetica. Porto.Portugal, 2010.
  40. Morales-Hojas R; Vieira C. P.; Reis, M.; Vieira J.. "Comparative analysis of five immunity-related genes reveals different levels of adaptive evolution in the virilis and melanogaster. groups of Drosophila". Trabalho apresentado em XII Congress of the European Society of Evolutionary Biology, Torino, 2009.
  41. Vieira J; Vieira C. P.. "Recombination at Prunus S-locus region SLFL1 gene". Trabalho apresentado em SMBE 2008, Barcelona, 2008.
  42. Fonseca NA.; Vieira C. P.; Holland PW; Vieira J. "Chemical evolution of ANTP and PRD homeobox genes". Trabalho apresentado em SMBE 2008, Barcelona, 2008.
  43. Morales-Hojas R; Reis, M.; Vieira C. P.; Vieira J.. "The fixation of a bilbo-like non-LTR retroelement in the virilis phylad of the Drosophila virilis group of species". Trabalho apresentado em SMBE 2008, Barcelona, 2008.
  44. Vieira J; Vieira C. P.. "Patterns of self-incompatibility in Prunus spinosa (Rosaceae)". Trabalho apresentado em 11th Congress of the European Society of Evolutionary Biology, Uppsala, 2007.
  45. Morales-Hojas R; Vieira C. P.; Vieira J. "A multilocus approach to the molecular systematics of the D. virilis group of species". Trabalho apresentado em 11th Congress of the European Society of Evolutionary Biology, Uppsala, 2007.
  46. Santos RAM; Nunes MDS; Ferreira SM; Vieira J; Vieira C. P.. "Variability patterns at the gametophytic self-incompatibility pollen gene in Prunus spinosa (Rosaceae): how they fit the theoretical predictions.". Trabalho apresentado em XVth National Congress of Biochemistry , Aveiro, 2006.
  47. Nunes MD; Santos RA.; Vieira J; Vieira C. P.. "Self-incompatibility in an allotetraploid Prunus spinosa (Rosaceae) natural population: characterization of the S-locus (s-RNase and SFB genes).". Trabalho apresentado em ESEBX, Kraków, 2005.
  48. Vieira C. P.; Vieira J.. "Choromosomal evolution in Drosophila americana: the role of selectio, population stucture and genetic drift". Trabalho apresentado em ESEBX, Kraków, 2005.
  49. Vieira C. P.; Vieira J.. "On the evolutionary history of the X/4 fusion of the Drosophila americana". Trabalho apresentado em ESEB IX Congress, Leeds, 2003.
  50. Vieira C. P.; Charlesworth D; Vieira J. "What is the role of recombination in the generation of new S-locus specificities?". Trabalho apresentado em ESEB IX Congress, Leeds, 2003.
  51. Vieira C. P.; Costas, J.; Casares F.; Vieira J.. "Molecular evolution of introns with regulatory function in Drosophila". Trabalho apresentado em Molecular Evolution, Sorrento, 2002.
  52. Vieira C. P.; Vieira J. "On the forces that created and maintain the genetic differenciation between D. americana “americana” and “texana” chromosomal races at the base of the X chromosome". Trabalho apresentado em Molecular Evolution, Sorrento, 2002.
  53. Vieira C. P.; Charlesworth, D.. "Nuclear DNA variation in the genera Antirrhinum and Misopates". Trabalho apresentado em VII ESEB Congress, Barcelona, 1999.
  54. Vieira C. P.; Vieira J; Charlesworth D. "The evolution of the cycloidea gene family in Scrophulariaceae". Trabalho apresentado em 32nd Annual Meeting of the population Genetics Group, Cambridge, 1999.
  55. Vieira J; Vieira C. P.; Hartl DL; Lozovskaya ER. "Patterns of genome evolution". Trabalho apresentado em 38th Annual Drosophila Research Conference. Chicago, 1997.
  56. Vieira, J.; Vieira C. P.; Hartl DL; Lozovskaya ER. "A Drosophila virilis physical map as a resource for analyzing patterns of genome evolution". Trabalho apresentado em Eastern Great Lakes, Molecular Evolution Meeting. Cornell University, 1996.
Atividades

Apresentação oral de trabalho

Título da apresentação Nome do evento
Anfitrião (Local do evento)
2021/06/01 Drosophila as a SCA3 model: inferences on the Josephin domain role II International Meeting of the Portuguese Society of Genetics
Universidade de Trás os Montes e Alto Douro (Vila Real, Portugal)
2021/06/01 On the novel Drosophila melanogaster ascorbic acid synthesis pathway II International Meeting of the Portuguese Society of Genetics
Universidade de Trás os Montes e Alto Douro (Vila Real, Portugal)
2021/06/01 Positively selected sites (PSS) found in Coronaviridae species using Auto-PSS-Genome II International Meeting of the Portuguese Society of Genetics
Universidade de Trás os Montes e Alto Douro (Vila Real, Portugal)
2019/07/26 Inferring positive selection in large viral datasets 13th International Conference on Practical Applications of Computational Biology & Bioinformatics: PACBB 2019
(Ávila, Espanha)
2019/02/20 EvoPPI 1.0: a Web Platform for Within and Between Species Multiple Interactome Comparisons and Application to Nine polyQ Proteins Determining Neurodegenerative Diseases VIII Bioinformatic Open days. University of Braga
(Braga, Portugal)
2018/06/20 A bioinformatics protocol for quickly creating large-scale phylogenetic trees 12th International Conference on Practical Applications of Computational Biology & Bioinformatics: PACBB 2018
2018/06/20 EvoPPI: a web application to compare protein-protein interactions (PPIs) from different databases and species 12th International Conference on Practical Applications of Computational Biology & Bioinformatics: PACBB 2018
(Toledo, Espanha)
2018/06/14 Bioinformatic tools to study Solanaceae S-pollen gametophytic self-incompatibility evolution: BDBM, ADOPS and B+ database Portuguese Society of Genetics Annual meeting 2018
(Porto, Portugal)
2018/06/14 Vitamin C biosynthesis in D. melanogaster: alternatives to GULO and influence of microbiome Portuguese Society of Genetics Annual meeting 2018
(Porto, Portugal)
2018/06/14 New in-silico approach to infer binding surfaces in wild-type and mutant Ataxin-1 Portuguese Society of Genetics Annual meeting 2018
2017/08/20 Evolution of eye size and head morphology between Drosophila americana and D. novamexicana ESEB 2017
(Groningen, Países Baixos)
2017/06/08 Differences in wing size and shape between Drosophila novamexicana and Drosophila Americana XLI Jornadas Portuguesas de Genética. University of Aveiro
2017/06/08 Is Fabaceae Gametophytic Self-Incompatibility system S-RNase based? XLI Jornadas Portuguesas de Genética, University of Aveiro
(Aveiro, Portugal)
2016/03/17 Chromosomal inversions and natural selection 17 th meeting Portugaliae Genetica Portuguese
(Porto, Portugal)
2015/05/25 Drosophila americana diapausing females show features typical of young flies XXXIX Jornadas Portuguesas de Genética
(Braga, Portugal)
2015/05/25 Genes from distinct lineages determine gametophytic self-incompatibility in Malus and Prunus XXXIX Jornadas Portuguesas de Genética
(Braga, Portugal)
2013/08/19 The paradigma of irreversibility in gametophytic self-incompatibility: the Malus and Prunus systems Congress of the European Society for Evolutionary Biology
(Lisboa, Portugal)
2012/12/06 Polymorphism at Frost gene explains developmental time variability in Drosophila americana Trends In Biodiversity and Evolution- TIBE 2012
2012/05/28 Are all mth-like genes involved in lifespan determination? XXXVII Jornadas Portuguesas de Genética
(Lisboa, Portugal)
2010/05/31 Models of pollen rejection for the inhibition of the S-RNase cytoxicity in Prunus and Maloideae XXXV Jornadas Portuguesas de Genética
(Braga, Portugal)
2002 Genetic differentiation between D. americana americana and D. americana texana at the paralitic locus at the base of the X chromosome Population Genetics Group, 35th Annual Meeting, University of Leeds
(Leeds, Reino Unido)
1999/05/05 Nuclear DNA variation in the genus in the genus Antirrhinum IX Antirrhinum Meeting
1998/03/28 Genetic diversity in natural populations of Antirrhinum: the S locus and other loci 8th International Antirrhinum Meeting

Orientação

Título / Tema
Papel desempenhado 		Curso (Tipo)
Instituição / Organização
2021 - 2025 Predicting the behavior of COVID19 pandemics
Orientador
 Biomedical Sciences Doctoral Degree (Doutoramento)
Universidade do Porto Instituto de Ciências Biomédicas Abel Salazar, Portugal
2020/01/01 - 2024 The novel Drosophila melanogaster ascorbic acid synthesis and transport mechanisms
Coorientador
 Biologia Molecular e Celular (Doutoramento)
Universidade do Porto Instituto de Ciências Biomédicas Abel Salazar, Portugal

Universidade do Porto Faculdade de Ciências, Portugal

Universidade do Porto Instituto de Biologia Molecular e Celular, Portugal
2020/01/01 - 2021/12/31 A Docker-oriented Pipeline for the analysis of Protein- Protein Interactions
Coorientador
 Bioinformática e Biologia Computacional (Mestrado)
Universidade do Porto Faculdade de Ciências, Portugal
2020 - 2021 A lesson from Coronaviridae: Predictive models for SARS-CoV-2 infection evolution and identification of potential future threats
Coorientador
 Master (Mestrado)
Universidade do Porto Faculdade de Ciências, Portugal
2020 - 2021 Drosophila melanogaster as a model for the identification of the ataxin-3 interaction regions
Orientador
Universidade do Porto Faculdade de Ciências, Portugal
2020 - 2021 S-Locus Finder: An automated pipeline tool for the identification of S-locus genes
Orientador
 Master in Bioinformatics and Computation Biology (Mestrado)
Universidade do Porto Faculdade de Ciências, Portugal
2019 - 2020 An evolutionary approach to understand how interactomes change when expansions of the polyglutamine (polyQ) tracts occur: implications for the human polyQ diseases
Orientador
 Biologia Celular e Molecular (Mestrado)
Universidade do Porto Faculdade de Ciências, Portugal
2019 - 2020 Evolutionary analyses of the polyQ proteins involved in neurodegenerative diseases in animals
Orientador
 Biologia (Licenciatura/Bacharelato)
Universidade do Porto Faculdade de Ciências, Portugal
2018 - 2019 The ancestral Rosaceae gametophytic self-incompatibility system
Orientador
 Biologia (Licenciatura/Bacharelato)
Universidade do Porto Faculdade de Ciências, Portugal
2018 - 2019 On the Origin of Chromosomal Inversions in Drosophila montana
Coorientador
 Biologia (Licenciatura/Bacharelato)
Universidade do Porto Faculdade de Ciências, Portugal
2018 - 2019 Cold resistance in the European Drosophila melanogaster
Coorientador
 Biologia (Licenciatura/Bacharelato)
Universidade do Porto Faculdade de Ciências, Portugal
2017 - 2019 Silvía Henriques Postdoctoral Research Fellow - Norte2020NEURO-BPD, Norte-01-0145-FEDER-000008 - Porto Neurosciences and Neurologic Disease Research Initiative at I3S
Coorientador
Universidade do Porto Instituto de Biologia Molecular e Celular, Portugal

Universidade do Porto Instituto de Investigação e Inovação em Saúde, Portugal
2017 - 2019 Heat resistance in the European Drosophila melanogaster
Coorientador
 Biologia (Licenciatura/Bacharelato)
Universidade do Porto Faculdade de Ciências, Portugal
2016 - 2019 Sara Rocha Postdoctoral Research Fellow - Norte2020NEURO39-BPD-Norte-01-0145-FEDER-000008 - Porto Neurosciences and Neurologic Disease Research Initiative at I3S
Orientador
Universidade do Porto Instituto de Investigação e Inovação em Saúde, Portugal

Universidade do Porto Instituto de Biologia Molecular e Celular, Portugal
2018 - 2018 Evolução do S-locus em Rosaceae
Orientador
 Biologia Funcional e Biotecnologia de Plantas (Mestrado)
Universidade do Porto Faculdade de Ciências, Portugal
2017 - 2018 Evolution of the vitamin C biosynthetic pathway and transport mechanism: from the global perspective to a Drosophila melanogaster case study
Coorientador
 Biologia Celular e Molecular (Mestrado)
Universidade do Porto Faculdade de Ciências, Portugal
2017 - 2018 Roseae S-locus evolution.
Orientador
 Biologia (Licenciatura/Bacharelato)
Universidade do Porto Faculdade de Ciências, Portugal
2017 - 2017 Gametophytic Self-incompatibility in Eudicots
Orientador
 Genética Molecular (Mestrado)
Universidade do Minho, Portugal
2016 - 2017 Candidate Genes Related with Development Time Variation in Drosophila americana and D. novamexicana
Coorientador
 Biologia Celular e Molecular (Mestrado)
Universidade do Porto Faculdade de Ciências, Portugal
2016 - 2017 Differences in wing size and shape between Drosophila novamexicana and D. americana
Coorientador
 Genética Molecular (Mestrado)
Universidade do Minho Escola de Ciências, Portugal
2016 - 2017 Automatic comparison of interactomes
Coorientador
 Mestrado Integrado em Engenharia Informática e Computação (Mestrado)
Universidade do Porto Faculdade de Ciências, Portugal
2016 - 2017 Evolution of the protein-protein interactions (PPI) of the wild-type (non-expanded form) polyQ proteins ataxin-2 and androgen receptor, associated with neurodegenerative disorders in Homo sapiens
Orientador
 Biologia (Licenciatura/Bacharelato)
Universidade do Porto Faculdade de Ciências, Portugal
2016 - 2017 T2-S-RNase like genes diversity in Trifolium pratense (Fabaceae)
Orientador
Universidade do Porto Faculdade de Ciências, Portugal
2016 - 2017 Evolution of the Rosaceae anthocyanins involved in fruit coloration
Orientador
 Biologia (Licenciatura/Bacharelato)
Universidade do Porto Faculdade de Ciências, Portugal
2015 - 2016 Copy number variation in S-pollen genes (SFBBs) and amino acid sequence polymorphism as mechanisms for S-RNase recognition in Maloideae (Rosaceae)
Orientador
 Biologia (Licenciatura/Bacharelato)
Universidade do Porto Faculdade de Ciências, Portugal
2015 - 2016 Caracterização molecular dos S2-, S5-, S10- e S25-haplótipos dos genes SFBB14, SFBB10, SFBBNOVO4 e SFBBnovo8 em Malus
Orientador
 Bioquímica (Licenciatura/Bacharelato)
Universidade do Porto Faculdade de Ciências, Portugal
2013 - 2014 Molecular basis of cold resistance: the role of Frost and Muc68E
Coorientador
 Biologia Celular e Molecular
Universidade do Porto Faculdade de Ciências, Portugal
2010 - 2014 On the identification and evolution of ecologically relevant genes in Drosophila americana
Coorientador
 Biodiversidade, Genética e Evolução (Doutoramento)
Universidade do Porto Faculdade de Ciências, Portugal
2012 - 2012 Characterization of the S-locus in Rosidae (Rosaceae and Fabaceae)
Orientador
 Biodiversidade, Genética e Evolução (Doutoramento)
Universidade do Porto Faculdade de Ciências, Portugal
2008 - 2009 As filogenias no ensino da Biologia Evolutiva- Desenvolvimento de aplicação e-learning com recurso à Bioinformática
Coorientador
 Biologia para o Ensino (Mestrado)
Universidade do Porto Faculdade de Ciências, Portugal
2007 - 2008 Patterns of Variability in the Gametophytic Self- Incompatibility Locus of Prunus spinosa (Rosaceae)
Orientador
 Biologia do Desenvolvimento e Reprodução Vegetal (Mestrado)
Universidade do Porto Faculdade de Ciências, Portugal

Curso / Disciplina lecionado

Disciplina Curso (Tipo) Instituição / Organização
2018 - Atual Co-regent of the classes in Molecular Evolution Bioinformática e Biologia Computacional (Mestrado) Universidade do Porto Faculdade de Ciências, Portugal
2013 - Atual Co-regent of the classes in Bioinformatics Biologia Molecular e Celular (Doutoramento) Universidade do Porto Faculdade de Ciências, Portugal
2012 - Atual Co-regent of the classes in Molecular Evolution Biologia Celular e Molecular (Mestrado integrado) Universidade do Porto Faculdade de Ciências, Portugal

Outro júri / avaliação

Descrição da atividade Instituição / Organização
2016 - 2017 Evaluator for the National Science Fondation (NSF) in 2016 and 2017
Distinções

Prémio

2018 Co-authorship work Inês Costa awarded the Honorable Mention-Communications By Poster-Biological Sciences at the IJUP-Faculdade de Medicina da Universidade do Porto