| Artigo em revista |
- Ivan Rodriguez-Conde; Celso Campos; Florentino Fdez-Riverola. "Optimized convolutional neural network architectures for efficient
on-device vision-based object detection". Neural Computing and Applications (2021): https://doi.org/10.1007/s00521-021-06830-w.
10.1007/s00521-021-06830-w
- Martín Pérez-Pérez; Tânia Ferreira; Anália Lourenço; Gilberto Igrejas; Florentino Fdez-Riverola. "Boosting biomedical document
classification through the use of domain entity recognizers and semantic ontologies for document representation: The case
of gluten bibliome". Neurocomputing (2021): https://doi.org/10.1016/j.neucom.2021.10.100.
10.1016/j.neucom.2021.10.100
- Augusto Ramoa; Jorge Condeço; Florentino Fdez-Riverola; Anália Lourenço. "HaemoKBS: A knowledge-based system for real-time,
continuous categorisation of adverse reactions in blood recipients". Neurocomputing 423 (2021): 756-767. https://doi.org/10.1016/j.neucom.2020.04.101.
10.1016/j.neucom.2020.04.101
- Nogueira-Rodriguez, Alba; Dominguez-Carbajales, Ruben; Campos-Tato, Fernando; Herrero, Jesus; Puga, Manuel; Remedios, David;
Rivas, Laura; et al. "Real-time polyp detection model using convolutional neural networks". Neural Computing and Applications
(2021): https://publons.com/publon/49485637/.
10.1007/S00521-021-06496-4
- Lopez-Fernandez, Hugo; Vieira, Cristina P.; Ferreira, Pedro; Gouveia, Paula; Fdez-Riverola, Florentino; Reboiro-Jato, Miguel;
Vieira, Jorge. "On the Identification of Clinically Relevant Bacterial Amino Acid Changes at the Whole Genome Level Using
Auto-PSS-Genome". Interdisciplinary Sciences: Computational Life Sciences (2021): https://publons.com/publon/40307900/.
10.1007/S12539-021-00439-2
- Nogueira-Rodriguez, Alba; Dominguez-Carbajales, Ruben; Lopez-Fernandez, Hugo; Iglesias, Agueda; Cubiella, Joaquin; Fdez-Riverola,
Florentino; Reboiro-Jato, Miguel; Glez-Pena, Daniel. "Deep Neural Networks approaches for detecting and classifying colorectal
polyps". Neurocomputing (2021): https://publons.com/publon/31872533/.
10.1016/J.NEUCOM.2020.02.123
- Guillermo Blanco; Lorena Ruiz; Hector Tamés; Patricia Ruas-Madiedo; Florentino Fdez-Riverola; Borja Sánchez; Anália Lourenço;
Abelardo Margolles. "Revisiting the Metabolic Capabilities of Bifidobacterium longum susbp. longum and Bifidobacterium longum
subsp. infantis from a Glycoside Hydrolase Perspective". Microorganisms (2020): https://doi.org/10.3390/microorganisms8050723.
10.3390/microorganisms8050723
- Osvaldo Graña-Castro; Hugo López-Fernández; Alba Nogueira-Rodríguez; Florentino Fdez-Riverola; Fátima Al-Shahrour; Daniel
Glez-Peña. "Metatax: Metataxonomics with a Compi-Based Pipeline for Precision Medicine". Interdisciplinary Sciences: Computational
Life Sciences (2020): https://publons.com/publon/31618880/.
10.1007/S12539-020-00368-6
- Estevez, Olivia; Anibarro, Luis; Garet, Elina; Pallares, Angeles; Barcia, Laura; Calvino, Laura; Maueia, Cremildo; et al.
"An RNA-seq Based Machine Learning Approach Identifies Latent Tuberculosis Patients With an Active Tuberculosis Profile".
Frontiers in Immunology (2020): https://publons.com/publon/33253123/.
10.3389/FIMMU.2020.01470
- Cambeiro-Perez, Noelia; Hidalgo-Cantabrana, Claudio; Antonio Moro-Garcia, Marco; Blanco-Miguez, Aitor; Fdez-Riverola, Florentino;
Riestra, Sabino; Lourenco, Analia; et al. "In silico and functional analyses of immunomodulatory peptides encrypted in the
human gut metaproteome". Journal of Functional Foods (2020): https://publons.com/publon/29200318/.
10.1016/J.JFF.2020.103969
- Perez-Rodriguez, Gael; Perez-Perez, Martin; Fdez-Riverola, Florentino; Lourenco, Analia. "Mining the sociome for Health Informatics:
Analysis of therapeutic lifestyle adherence of diabetic patients in Twitter". Future Generation Computer Systems (2020):
https://publons.com/publon/33991997/.
10.1016/J.FUTURE.2020.04.025
- Blanco, Guillermo; Perez-Lopez, Roi; Fdez-Riverola, Florentino; Garcia Lourenco, Analia Maria. "Understanding the social evolution
of the Java community in Stack Overflow: A 10-year study of developer interactions". Future Generation Computer Systems
(2020): https://publons.com/publon/21507199/.
10.1016/J.FUTURE.2019.12.021
- Lopez-Fernandez, Hugo; Duque, Pedro; Vazquez, Noe; Fdez-Riverola, Florentino; Reboiro-Jato, Miguel; Vieira, Cristina P.; Vieira,
Jorge. "Inferring Positive Selection in Large Viral Datasets". Advances in Soft Computing (2020): https://publons.com/publon/31218149/.
10.1007/978-3-030-23873-5_8
- Grana-Castro, Osvaldo; Lopez-Fernandez, Hugo; Fdez-Riverola, Florentino; Al-Shahrour, Fatima; Glez-Pena, Daniel. "Proposal
of a New Bioinformatics Pipeline for Metataxonomics in Precision Medicine". Advances in Soft Computing (2020): https://publons.com/publon/31218148/.
10.1007/978-3-030-23873-5_2
- Hidalgo-Cantabrana, Claudio; Antonio Moro-Garcia, Marco; Blanco-Miguez, Aitor; Fdez-Riverola, Florentino; Olivan, Mamen; Royo,
Luis J.; Riestra, Sabino; et al. "The extracellular proteins of Lactobacillus acidophilus DSM 20079(T) display anti-inflammatory
effect in both in piglets, healthy human donors and Crohn's Disease patients". Journal of Functional Foods (2020):
https://publons.com/publon/31218150/.
10.1016/J.JFF.2019.103660
- Martin Pérez-Pérez; Gael Pérez-Rodríguez; Aitor Blanco-Míguez; Florentino Fdez-Riverola; Alfonso Valencia; Martin Krallinger;
Anália Lourenço. "Next generation community assessment of biomedical entity recognition web servers: metrics, performance,
interoperability aspects of BeCalm". Journal of Cheminformatics 11 1 (2019): https://doi.org/10.1186/s13321-019-0363-6.
10.1186/s13321-019-0363-6
- Beatriz Villamarín-Bello; Berta Uriel-Latorre; Florentino Fdez-Riverola; María Sande-Meijide; Daniel Glez-Peña. "Gold Standard
Evaluation of an Automatic HAIs Surveillance System". BioMed Research International (2019): https://doi.org/10.1155/2019/1049575.
10.1155/2019/1049575
- Martín Pérez-Pérez; Gael Pérez-Rodríguez; Florentino Fdez-Riverola; Anália Lourenço. "Using Twitter to Understand the Human
Bowel Disease Community: Exploratory Analysis of Key Topics". Journal of Medical Internet Research 21 8 (2019): e12610-e12610.
https://doi.org/10.2196/12610.
10.2196/12610
- Gael Pérez-Rodríguez; Martín Pérez-Pérez; Florentino Fdez-Riverola; Anália Lourenço. "Online visibility of software-related
web sites: The case of biomedical text mining tools". Information Processing & Management 56 3 (2019): 565-583. https://doi.org/10.1016/j.ipm.2018.11.011.
10.1016/j.ipm.2018.11.011
- Aitor Blanco-Míguez; Florentino Fdez-Riverola; Anália Lourenço; Borja Sánchez. "In silico prediction reveals the existence
of potential bioactive neuropeptides produced by the human gut microbiota". Food Research International 119 (2019):
221-226. https://doi.org/10.1016/j.foodres.2019.01.069.
10.1016/j.foodres.2019.01.069
- Florentino Fdez-Riverola; Miguel Rocha. "Selected Extended Papers of the 12th International Conference on Practical Applications
of Computational Biology and Bioinformatics (PACBB)". Journal of Integrative Bioinformatics 0 0 (2019): https://doi.org/10.1515/jib-2019-0004.
10.1515/jib-2019-0004
- Blanco-Miguez, Aitor; Blanco, Guillermo; Gutierrez-Jacome, Alberto; Fdez-Riverola, Florentino; Sanchez, Borja; Lourenco, Analia.
"Computational prediction of the bioactivity potential of proteomes based on expert knowledge". Journal of Biomedical Informatics
(2019): https://publons.com/publon/26422021/.
10.1016/J.JBI.2019.103121
- Vazquez, Noe; Rocha, Sara; Lopez-Fernandez, Hugo; Torres, Andre; Camacho, Rui; Fdez-Riverola, Florentino; Vieira, Jorge; Vieira,
Cristina P.; Reboiro-Jato, Miguel. "EvoPPI: A Web Application to Compare Protein-Protein Interactions (PPIs) from Different
Databases and Species". Advances in Soft Computing (2019): https://publons.com/publon/31218158/.
10.1007/978-3-319-98702-6_18
- Vieira, Jorge; Rocha, Sara; Vazquez, Noe; Lopez-Fernandez, Hugo; Fdez-Riverola, Florentino; Reboiro-Jato, Miguel; Vieira,
Cristina P.. "Predicting Specificities Under the Non-self Gametophytic Self-Incompatibility Recognition Model". Frontiers
in Plant Science (2019): https://publons.com/publon/31218151/.
10.3389/FPLS.2019.00879
- Blanco-Miguez, Aitor; Fdez-Riverola, Florentino; Sanchez, Borja; Lourenco, Analia. "Resources and tools for the high-throughput,
multi-omic study of intestinal microbiota". Briefings in Bioinformatics (2019): https://publons.com/publon/25816552/.
10.1093/BIB/BBX156
- Blanco, Guillermo; Sanchez, Borja; Fdez-Riverola, Florentino; Margolles, Abelardo; Lourenco, Analia. "In silico Approach for
Unveiling the Glycoside Hydrolase Activities in Faecalibacterium prausnitzii Through a Systematic and Integrative Large-Scale
Analysis". Frontiers in Microbiology (2019): https://publons.com/publon/25816550/.
10.3389/FMICB.2019.00517
- Rocha, Sara; Vieira, Jorge; Vazquez, Noe; Lopez-Fernandez, Hugo; Fdez-Riverola, Florentino; Reboiro-Jato, Miguel; Sousa, Andre
D.; Vieira, Cristina P.. "ATXN1 N-terminal region explains the binding differences of wild-type and expanded forms". BMC
Medical Genomics (2019): https://publons.com/publon/20789232/.
10.1186/S12920-019-0594-4
- Henriques, Silvia F.; Duque, Pedro; Lopez-Fernandez, Hugo; Vazquez, Noe; Fdez-Riverola, Florentino; Reboiro-Jato, Miguel;
Vieira, Cristina P.; Vieira, Jorge. "Multiple independent L-gulonolactone oxidase (GULO) gene losses and vitamin C synthesis
reacquisition events in non-Deuterostomian animal species". BMC Evolutionary Biology (2019): https://publons.com/publon/31218152/.
10.1186/S12862-019-1454-8
- Vazquez, Noe; Lopez-Fernandez, Hugo; Vieira, Cristina P.; Fdez-Riverola, Florentino; Vieira, Jorge; Reboiro-Jato, Miguel.
"BDBM 1.0: A Desktop Application for Efficient Retrieval and Processing of High-Quality Sequence Data and Application to the
Identification of the Putative Coffea S-Locus". Interdisciplinary Sciences: Computational Life Sciences (2019): https://publons.com/publon/31218154/.
10.1007/S12539-019-00320-3
- Lopez-Fernandez, Hugo; Duque, Pedro; Henriques, Silvia; Vazquez, Noe; Fdez-Riverola, Florentino; Vieira, Cristina P.; Reboiro-Jato,
Miguel; Vieira, Jorge. "A Bioinformatics Protocol for Quickly Creating Large-Scale Phylogenetic Trees". Advances in Soft
Computing (2019): https://publons.com/publon/31218155/.
10.1007/978-3-319-98702-6_11
- Lopez-Fernandez, Hugo; Duque, Pedro; Henriques, Silvia; Vazquez, Noe; Fdez-Riverola, Florentino; Vieira, Cristina P.; Reboiro-Jato,
Miguel; Vieira, Jorge. "Bioinformatics Protocols for Quickly Obtaining Large-Scale Data Sets for Phylogenetic Inferences".
Interdisciplinary Sciences: Computational Life Sciences (2019): https://publons.com/publon/20214736/.
10.1007/S12539-018-0312-5
- Vazquez, Noe; Rocha, Sara; Lopez-Fernandez, Hugo; Torres, Andre; Camacho, Rui; Fdez-Riverola, Florentino; Vieira, Jorge; Vieira,
Cristina P.; Reboiro-Jato, Miguel. "EvoPPI 1.0: a Web Platform for Within- and Between-Species Multiple Interactome Comparisons
and Application to Nine PolyQ Proteins Determining Neurodegenerative Diseases". Interdisciplinary Sciences: Computational
Life Sciences (2019): https://publons.com/publon/31218153/.
10.1007/S12539-019-00317-Y
- Maia, Paulo; Perez-Rodriguez, Gael; Perez-Perez, Martin; Fdez-Riverola, Florentino; Lourenco, Analia; Azevedo, Nuno F.. "Application
of agent-based modelling to assess single-molecule transport across the cell envelope of E. coli". Computers in Biology
and Medicine (2019): https://publons.com/publon/14528446/.
10.1016/J.COMPBIOMED.2019.02.020
- Lopez-Fernandez, Hugo; Blanco-Miguez, Aitor; Fdez-Riverola, Florentino; Sanchez, Borja; Lourenco, Analia. "DEWE: A novel tool
for executing differential expression RNA-Seq workflows in biomedical research". Computers in Biology and Medicine
(2019): https://publons.com/publon/10240508/.
10.1016/J.COMPBIOMED.2019.02.021
- Fdez-Riverola, Florentino; Marcelino, Isabel; Laza, Rosalia; Domingues, Patricio; Gomez-Meire, Silvana; Fdez-Riverola, Florentino;
Pereira, Antonio. "Active and Assisted Living Ecosystem for the Elderly". Sensors (2018): http://www.mdpi.com/1424-8220/18/4/1246.
10.3390/s18041246
- Augusto Ramoa; Jorge Condeço; Maria Antónia Escoval; Jean-Claude Faber; Florentino Fdez-Riverola; Anália Lourenço. "The Evolving
Role of Information Technology in Haemovigilance Systems". Journal of Healthcare Engineering (2018): https://doi.org/10.1155/2018/6183468.
10.1155/2018/6183468
- José Ramón Méndez Reboredo; David Ruano-Ordás; Florentino Fdez-Riverola; José R. Méndez. "Using evolutionary computation for
discovering spam patterns from e-mail samples". Information Processing & Management (2018): https://publons.com/publon/18214017/.
10.1016/J.IPM.2017.12.001
- Vazquez, Noe; Vieira, Cristina P.; Amorim, Barbara S. R.; Torres, Andre; Lopez-Fernandez, Hugo; Fdez-Riverola, Florentino;
Sousa, Jose L. R.; Reboiro-Jato, Miguel; Vieira, Jorge. "Large Scale Analyses and Visualization of Adaptive Amino Acid Changes
Projects". Interdisciplinary Sciences: Computational Life Sciences (2018): https://publons.com/publon/18344116/.
10.1007/S12539-018-0282-7
- José Ramón Méndez Reboredo; David Ruano-Ordás; Florentino Fdez-Riverola; José R. Méndez. "Concept drift in e-mail datasets:
An empirical study with practical implications". Information Sciences (2018): https://publons.com/publon/18214015/.
10.1016/J.INS.2017.10.049
- Grana, Osvaldo; Lopez-Fernandez, Hugo; Fdez-Riverola, Florentino; Gonzalez Pisano, David; Glez-Pena, Daniel. "Bicycle: a bioinformatics
pipeline to analyze bisulfite sequencing data". Bioinformatics (2018): https://publons.com/publon/1063410/.
10.1093/BIOINFORMATICS/BTX778
- Perez-Rodriguez, Gael; Dias, Sonia; Perez-Perez, Martin; Fdez-Riverola, Florentino; Azevedo, Nuno F.; Lourenco, Analia. "Agent-based
model of diffusion of N-acyl homoserine lactones in a multicellular environment of Pseudomonas aeruginosa and Candida albicans".
Biofouling (2018): https://publons.com/publon/7947197/.
10.1080/08927014.2018.1440392
- Rocha, Miguel; Fdez-Riverola, Florentino. "Advanced Practical Applications of Computational Biology & Bioinformatics: PACBB'15".
Current Bioinformatics (2018): https://publons.com/publon/18499198/.
10.2174/157489361306181107184700
- Hidalgo-Cantabrana, C.; Moro-Garcia, M.; Blanco-Miguez, A.; Fernandez-Riverola, F.; Lourenco, A.; Riestra, S.; Alonso-Arias,
R.; Sanchez Garcia, B.. "EXTRACELLULAR PROTEINS OF LACTOBACILLUS ACIDOPHILUS DSM 20079 DOWNREGULATES PRO-INFLAMMATORY MEDIATORS
IN IBD PATIENTS". Annals of Nutrition and Metabolism (2018): https://publons.com/publon/18629240/.
- Fdez-Glez, Jorge; Ruano-Ordas, David; Mendez, Jose R.; Fdez-Riverola, Florentino; Laza, Rosalia; Pavon, Reyes. "Determining
the Influence of Class Imbalance for the Triage of Biomedical Documents". Current Bioinformatics (2018): https://publons.com/publon/25791199/.
10.2174/1574893612666170718151238
- Grana, O.; Rubio-Camarillo, M.; Fdez-Riverola, F.; Pisano, D. G.; Glez-Pena, D.. "Nextpresso: Next Generation Sequencing Expression
Analysis Pipeline". Current Bioinformatics (2018): https://publons.com/publon/31218156/.
10.2174/1574893612666170810153850
- Aparicio, Fernando; Luz Morales-Botello, Maria; Rubio, Margarita; Hernando, Asuncion; Munoz, Rafael; Lopez-Fernandez, Hugo;
Glez-Pena, Daniel; et al. "Perceptions of the use of intelligent information access systems in university level active learning
activities among teachers of biomedical subjects". International Journal of Medical Informatics (2018): https://publons.com/publon/13408749/.
10.1016/J.IJMEDINF.2017.12.016
- Lopez-Fernandez, Hugo; Araujo, Jose E.; Jorge, Susana; Glez-Pena, Daniel; Reboiro-Jato, Miguel; Santos, Hugo M.; Fdez-Riverola,
Florentino; Capelo, Jose L.. "S2P: A software tool to quickly carry out reproducible biomedical research projects involving
2D-gel and MALDI-TOF MS protein data". Computer Methods and Programs in Biomedicine (2018): https://publons.com/publon/1626390/.
10.1016/J.CMPB.2017.11.024
- Blanco-Miguez, Aitor; Fdez-Riverola, Florentino; Sanchez, Borja; Lourenco, Analia; Aitor Blanco-Míguez; Alexandre G. de Brevern;
Florentino Fdez-Riverola; Borja Sánchez; Anália Lourenço. "BlasterJS: A novel interactive JavaScript visualisation component
for BLAST alignment results". Plos One (2018): https://publons.com/publon/2626923/.
10.1371/JOURNAL.PONE.0205286
- Lopez-Fernandez, Hugo; Reboiro-Jato, Miguel; Glez-Pena, Daniel; Laza, Rosalie; Pavon, Reyes; Fdez-Riverola, Florentino. "GC4S:
A bioinformatics-oriented Java software library of reusable graphical user interface components". Plos One (2018):
https://publons.com/publon/18629242/.
10.1371/JOURNAL.PONE.0204474
- Miguel Callón; Jorge Fdez-Glez; David Ruano-Ordás; Rosalía Laza; Reyes Pavón; Florentino Fdez-Riverola; Jose Méndez; et al.
"WARCProcessor: An Integrative Tool for Building and Management of Web Spam Corpora". Sensors 18 1 (2017): 16-16. https://doi.org/10.3390/s18010016.
10.3390/s18010016
- Blanco-Míguez A; Fdez-Riverola F; Lourenço A; Sánchez B; Blanco-Miguez, Aitor; Fdez-Riverola, Florentino; Lourenco, Analia;
Sanchez, Borja. "P4P: a peptidome-based strain-level genome comparison web tool.". Nucleic Acids Research (2017): http://europepmc.org/abstract/med/28482090.
10.1093/nar/gkx389
- Fernandes, V.B.; Yevseyeva, I.; Méndez, J.R.; Zhao, J.; Fdez-Riverola, F.; Emmerich, M.T.M.. "Corrigendum to “A spam filtering
multi-objective optimization study covering parsimony maximization and three-way classification” [Applied Soft Computing Journal
48 (2016) 111–123](S1568494616303234)(10.1016/j.asoc.2016.06.043)". Applied Soft Computing Journal 55 (2017): http://www.scopus.com/inward/record.url?eid=2-s2.0-85014960852&partnerID=MN8TOARS.
10.1016/j.asoc.2017.02.023
- Rubio-Camarillo, Miriam; Lopez-Fernandez, Hugo; Gomez-Lopez, Gonzalo; Carro, Angel; Maria Fernandez, Jose; Fustero Torre,
Coral; Fdez-Riverola, Florentino; Glez-Pena, Daniel. "RUbioSeq plus : A multiplatform application that executes parallelized
pipelines to analyse next-generation sequencing data". Computer Methods and Programs in Biomedicine (2017): https://publons.com/publon/3376134/.
10.1016/J.CMPB.2016.10.008
- Perez-Perez, Martin; Perez-Rodriguez, Gael; Fdez-Riverola, Florentino; Lourenco, Analia. "Collaborative relation annotation
and quality analysis in Markyt environment". Database (2017): https://publons.com/publon/7947196/.
10.1093/DATABASE/BAX090
- Vazquez, Noe; Vieira, Cristina P.; Amorim, Barbara S. R.; Torres, Andre; Lopez-Fernandez, Hugo; Fdez-Riverola, Florentino;
Sousa, Jose L. R.; Reboiro-Jato, Miguel; Vieira, Jorge. "Automated Collection and Sharing of Adaptive Amino Acid Changes Data".
Advances in Soft Computing (2017): https://publons.com/publon/31218160/.
10.1007/978-3-319-60816-7_3
- Lopez-Fernandez, Hugo; Araujo, Jose E.; Glez-Pena, Daniel; Reboiro-Jato, Miguel; Fdez-Riverola, Florentino; Capelo-Martinez,
Jose L.. "S2P: A Desktop Application for Fast and Easy Processing of 2D-Gel and MALDI-Based Mass Spectrometry Protein Data".
Advances in Soft Computing (2017): https://publons.com/publon/15734284/.
10.1007/978-3-319-60816-7_1
- Hidalgo-Cantabrana, Claudio; Moro-Garcia, Marco A.; Blanco-Miguez, Aitor; Fdez-Riverola, Florentino; Lourenco, Analia; Alonso-Arias,
Rebeca; Sanchez, Borja. "In Silico Screening of the Human Gut Metaproteome Identifies Th17-Promoting Peptides Encrypted in
Proteins of Commensal Bacteria". Frontiers in Microbiology (2017): https://publons.com/publon/18629245/.
10.3389/FMICB.2017.01726
- Florentino Fdez-Riverola; Miguel Rocha. "Selected Extended Papers of the 11th International Conference on Practical Applications
of Computational Biology and Bioinformatics (PACBB)". Journal of Integrative Bioinformatics (2017): https://publons.com/publon/8954931/.
10.1515/JIB-2017-0071
- Blanco-Miguez, Aitor; Gutierrez-Jacome, Alberto; Fdez-Riverola, Florentino; Lourenco, Analia; Sanchez, Borja; Blanco-Míguez,
A.; Gutiérrez-Jácome, A.; et al. "MAHMI database: a comprehensive MetaHit-based resource for the study of the mechanism of
action of the human microbiota". Database 2017 1 (2017): https://publons.com/publon/8311796/.
10.1093/DATABASE/BAW157
- Miguel Rocha; Florentino Fdez-Riverola. "Editorial (Thematic Issue: Selected Papers from the Annual PACBB Conference 2014:
Special Issue)". Current Bioinformatics 11 5 (2016): 502-502. https://doi.org/10.2174%2F157489361105161101210018.
10.2174/157489361105161101210018
- G. Pérez-Rodríguez; M. Pérez-Pérez; F. Fdez-Riverola; A. Lourenço; Perez-Rodriguez, G.; Perez-Perez, M.; Fdez-Riverola, F.;
Lourenco, A.. "High performance computing for three-dimensional agent-based molecular models". Journal of Molecular Graphics
and Modelling 68 (2016): 68-77. https://doi.org/10.1016%2Fj.jmgm.2016.06.001.
10.1016/j.jmgm.2016.06.001
- Hugo López Fernández; Miguel Reboiro-Jato; José A. Pérez Rodríguez; Florentino Fdez-Riverola; Daniel Glez-Peña. "Implementing
effective machine learning-based workflows for the analysis of mass spectrometry data". Journal of Integrated OMICS
6 1 (2016): https://doi.org/10.5584%2Fjiomics.v6i1.196.
10.5584/jiomics.v6i1.196
- H.J. Gómez-Vallejo; B. Uriel-Latorre; M. Sande-Meijide; B. Villamarín-Bello; R. Pavón; F. Fdez-Riverola; D. Glez-Peña; et
al. "A case-based reasoning system for aiding detection and classification of nosocomial infections". Decision Support
Systems 84 (2016): 104-116. http://dx.doi.org/10.1016/j.dss.2016.02.005.
10.1016/j.dss.2016.02.005
- Basto-Fernandes, V.; Yevseyeva, I.; Méndez, J.R.; Zhao, J.; Fdez-Riverola, F.; T.M. Emmerich, M.; Basto-Fernandes, Vitor;
et al. "A spam filtering multi-objective optimization study covering parsimony maximization and three-way classification".
Applied Soft Computing Journal 48 (2016): 111-123. http://www.scopus.com/inward/record.url?eid=2-s2.0-84978764270&partnerID=MN8TOARS.
10.1016/j.asoc.2016.06.043
- Blanco-Míguez, A.; Gutiérrez-Jácome, A.; Pérez-Pérez, M.; Pérez-Rodríguez, G.; Catalán-García, S.; Fdez-Riverola, F.; Lourenço,
A.; et al. "From amino acid sequence to bioactivity: The biomedical potential of antitumor peptides". Protein Science
25 6 (2016): 1084-1095. http://www.scopus.com/inward/record.url?eid=2-s2.0-84963957246&partnerID=MN8TOARS.
10.1002/pro.2927
- Blanco-Míguez, A.; Gutiérrez-Jácome, A.; Fdez-Riverola, F.; Lourenço, A.; Sánchez, B.; Blanco-Miguez, Aitor; Gutierrez-Jacome,
Alberto; et al. "A peptidome-based phylogeny pipeline reveals differential peptides at the strain level within Bifidobacterium
animalis subsp. lactis". Food Microbiology 60 (2016): 137-141. http://www.scopus.com/inward/record.url?eid=2-s2.0-84979529897&partnerID=MN8TOARS.
10.1016/j.fm.2016.06.015
- Jorge, P.; Pérez-Pérez, M.; Rodríguez, G.P.; Fdez-Riverola, F.; Pereira, M.O.; Lourenço, A.. "Reconstruction of the network
of experimentally validated AMP-drug combinations against Pseudomonas aeruginosa infections". Current Bioinformatics
11 5 (2016): 523-530. http://www.scopus.com/inward/record.url?eid=2-s2.0-84995902824&partnerID=MN8TOARS.
10.2174/1574893611666160527101340
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approach based on gold-nanoparticles followed by matrix assisted laser desorption ionization time of flight mass spectrometry
for the analysis of urine profiling of knee osteoarthritis". Talanta 150 (2016): 638-645. http://www.scopus.com/inward/record.url?eid=2-s2.0-84953722559&partnerID=MN8TOARS.
10.1016/j.talanta.2015.06.043
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Valencia, Alfonso; et al. "The Markyt visualisation, prediction and benchmark platform for chemical and gene entity recognition
at BioCreative/CHEMDNER challenge". Database (2016): https://publons.com/publon/480056/.
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Miguel; Arruda, Marco A. Z.; et al. "Laser ablation and inductively coupled plasma mass spectrometry focusing on bioimaging
from elemental distribution using MatLab software: a practical guide". Journal of Analytical Atomic Spectrometry 31
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D.; Fdez-Glez, J.; et al. "RuleSIM: a toolkit for simulating the operation and improving throughput of rule-based spam filters".
Software: Practice and Experience 46 8 (2016): 1091-1108. https://publons.com/publon/480063/.
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"Reconstruction of the Network of Experimentally Validated AMP-Drug Combinations Against Pseudomonas aeruginosa Infections".
Current Bioinformatics (2016): https://publons.com/publon/7946898/.
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Methods and Programs in Biomedicine 131 (2016): 63-77. https://publons.com/publon/13200875/.
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10.1016/J.TALANTA.2016.02.026
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Jorge, P.; et al. "Construction of antimicrobial peptide-drug combination networks from scientific literature based on a semi-automated
curation workflow". Database 2016 (2016): https://publons.com/publon/2426429/.
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Borja; Lourenco, Analia; et al. "Improving Phylogeny Reconstruction at the Strain Level Using Peptidome Datasets". PLOS
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F.; Méndez, J.R.. "Using new scheduling heuristics based on resource consumption information for increasing throughput on
rule-based spam filtering systems". Software: Practice and Experience 46 8 (2016): 1035-1051. https://publons.com/publon/4405621/.
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Lourenco, Analia. "Marky: A tool supporting annotation consistency in multi-user and iterative document annotation projects".
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et al. "Enabling systematic, harmonised and large-scale biofilms data computation: The biofilms experiment workbench". Computer
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10.1016/j.cmpb.2014.12.005
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Protocol Stack Review". International Journal of Distributed Sensor Networks 2015 (2015): 1-23. https://doi.org/10.1155/2015/213705.
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Juan; Salleh, A.H.M.; et al. "Gene knockout identification for metabolite production improvement using a hybrid of genetic
ant colony optimization and flux balance analysis". Biotechnology and Bioprocess Engineering 20 4 (2015): 685-693.
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EDMETIC 4 2 (2015): 137-137. https://publons.com/publon/12062663/.
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of northwest Spain white wine varieties using machine learning techniques". Food Research International 60 (2014):
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Florentino. "A novel ensemble of classifiers that use biological relevant gene sets for microarray classification". Applied
Soft Computing Journal 17 (2014): 117-126. http://www.scopus.com/inward/record.url?eid=2-s2.0-84893274950&partnerID=MN8TOARS.
10.1016/j.asoc.2014.01.002
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Carlos; Miro, Manuel; Capelo, J. L.. "A mesofluidic platform integrating on-chip probe ultrasonication for multiple sample
pretreatment involving denaturation, reduction, and digestion in protein identification assays by mass spectrometry". Analyst
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10.1039/c3an02178e
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Users and Ambient Assisted Living: A Smart Home Case Study". Sensors (2014): https://publons.com/publon/17895075/.
10.3390/S140814302
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and Accident Detection Based on Sensor Fusion". Sensors (2014): https://publons.com/publon/18629255/.
10.3390/S140508961
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Capelo-Martínez; Fernández-Costa, C.; et al. "Sequential depletion coupled to C18 sequential extraction as a rapid tool for
human serum multiple profiling". Talanta 125 (2014): 189-195. https://publons.com/publon/2831163/.
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10.1093/bib/bbt026
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energy production with isolated systems". Jurnal Teknologi (Sciences and Engineering) 63 3 (2013): 9-16. http://www.scopus.com/inward/record.url?eid=2-s2.0-84881067692&partnerID=MN8TOARS.
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A.; et al. "The Drosophila melanogaster methuselah Gene: A Novel Gene with Ancient Functions". Plos One 8 5 (2013):
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M. E.; Capelo, J. L.. "Speeding up the screening of steroids in urine: Development of a user-friendly library". Steroids
78 12-13 (2013): 1226-1232. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000327287800010&KeyUID=WOS:000327287800010.
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Raspe, Olivier; Vieira, Cristina P.. "Patterns of evolution at the gametophytic self-incompatibility Sorbus aucuparia (Pyrinae)
S pollen genes support the non-self recognition by multiple factors model". Journal of Experimental Botany 64 8 (2013):
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Expert Systems With Applications 40 1 (2013): 52-63. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000309378200006&KeyUID=WOS:000309378200006.
10.1016/j.eswa.2012.07.003
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10.1016/j.jss.2013.07.036
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A software platform for annotating biomedical documents with application in medical learning environments". Computer Methods
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10.1016/j.cmpb.2013.03.007
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Olivia; Capelo, J. L.. "A new approach to bacterial colony morphotyping by matrix-assisted laser desorption ionization time
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10.1016/j.talanta.2013.04.058
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model for river flow forecasting". Applied Soft Computing 13 8 (2013): 3449-3458. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000321494200003&KeyUID=WOS:000321494200003.
10.1016/j.asoc.2013.04.014
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in Photovoltaic Energy Production with Isolated Systems". Jurnal Teknologi (2013): https://publons.com/publon/18629256/.
10.11113/JT.V63.1947
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10.2390/biecoll-jib-2012-199
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Efficient Movement Monitoring". Sensors 12 9 (2012): 12473-12488. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000309269900063&KeyUID=WOS:000309269900063.
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10.1016/j.eswa.2012.04.064
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Selecting appropriate decision rules for boundary e-mail classification". Applied Soft Computing 12 11 (2012): 3671-3682.
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10.1016/j.asoc.2012.05.024
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JMC. "Biological Knowledge Integration in DNA Microarray Gene Expression Classification Based on Rough Set Theory". 6th
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N; FdezRiverola, F; Rodriguez, JMC. "On the Development of a Pipeline for the Automatic Detection of Positively Selected Sites".
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10.1016/j.jss.2012.06.027
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