Artigo em conferência |
- Dourado, Fernando; Forte, Ana Cristina Figueiras; Mota, André; Neto, Belmira; Ferreira, Eugénio C.; Silva, Francisco Almeida
Garrett Soares; Oliveira, João Vítor; et al. "Bacterial cellulose production: valorization of wastewater and life cycle assessment".
2022.
- Forte, Ana Cristina Figueiras; Dourado, Fernando; Gama, F. M.; Ferreira, Eugénio C.. "Economic & environmental assessment
of bacterial cellulose production". 2021.
- Lima, Diogo Batista; Lagoa, Davide Rafael Santos; Cruz, Fernando João Pereira da; Bastos, José; Capela, João; Ferreira, Eugénio
C.; Rocha, Miguel; Dias, Oscar. "merlin v4: an updated platform for reconstructing genome-scale metabolic models". 2020.
- Melo, A. R. B.; Padrão, Jorge; Nicolau, Ana; Quintelas, Cristina; Ferreira, Eugénio C.; Mesquita, D. P.. "Toxicity assessment
of ibuprofen on activated sludge by respirometric technique". 2019.
- Ferreira, Eugénio C.. "Biotecnologia para o desenvolvimento sustentado da bioeconomia do Norte de Portugal". 2019.
- Paulo, Ana M. S.; Costa, Joana; Amorim, Catarina L.; Mesquita, Daniela P.; Ferreira, Eugénio C.; Castro, Paula M.L.; Costa,
Joana Sofia Gomes; Mesquita, D. P.; Castro, Paula M. L.. "Impact of industrial wastewater on aerobic granules morphology and
nitrification process in bioreactors". 2019.
- Quintelas, Cristina Maria Catalão; Melo, António Renê Benevides de; Mesquita, D. P.; Ferreira, Eugénio C.; Amaral, António
Luís Pereira do. "Rapid method for the quantification and identification of emerging compounds in wastewater based in nir
spectroscopy and chemometrics". 2019.
- Forte, Ana Cristina Figueiras; Dourado, Fernando; Gama, F. M.; Ferreira, Eugénio C.. "Life cycle assessment (cradle-to-gate)
of bacterial cellulose production". 2019.
- Soares da Silva, F. A. G.; Dourado, Fernando; Ferreira, Eugénio C.; Poças, F.; Gama, F. M.. "Optimization of bacterial nanocellulose
fermentation using lignocellulosic residues and development of novel BNC-starch composites". 2019.
- Forte, Ana; Dourado, Fernando; Gama, F. M.; Ferreira, Eugénio C.. "Cradle-to-gate assessment of bacterial cellulose production".
2019.
- Leal, Cristiano; Val, Angeles; Zlatkova, Anastasiya; Araújo, Bárbara; Mesquita, D. P.; Amaral, A. Luís; Ferreira, Eugénio
C.. "Density and sludge volume index estimation in mature aerobic granular sludge by quantitative image analysis and chemometrics
tools". 2018.
- Lagoa, D.; Liu, Filipe; Ferreira, Eugénio C.; Faria, J.; Henry, C.; Dias, Oscar. "Towards a genome-wide transport systems
encoding genes tracker". 2018.
- Quintelas, Cristina; Mesquita, D. P.; Ferreira, Eugénio C.; Amaral, A. Luís. "Quantification of pharmaceuticals contaminants
in wastewaters by NIR spectroscopy". 2018.
- Ferreira, V.; Cortez, Susana; Padrão, Jorge; Mesquita, D. P.; Dias, Nicolina M.; Duarte, Maria Salomé; Ferreira, Eugénio C.;
et al. "Impact of professional cleaning agent used in fish-canning industry in wastewater treatment". 2018.
- Ferreira, Eugénio C.. "CEB: Centro de Engenharia Biológica [da] Universidade do Minho". 2018.
- Santos, Sílvio Roberto Branco; Brandão, Ana Catarina; Oliveira, A.; Melo, Luís Daniel Rodrigues; Pinto, Graça; Oliveira, Hugo
Alexandre Mendes; Ferreira, Eugénio C.; Azeredo, Joana. "New bacterial biorecognition elements from phage origin". 2017.
- Mesquita, D. P.; Amaral, A. Luís; Ferreira, Eugénio C.. "Quantitative Image Analysis: a monitoring tool in wastewater treatment".
2017.
- Amaral, A. Luís; Genisheva, Zlatina; Quintelas, Cristina; Mesquita, D. P.; Ferreira, Eugénio C.; Oliveira, José Maria. "Wine
chemical characterization by near infrared spectroscopy and chemometric analysis". 2017.
- Quintelas, Cristina Maria Catalão; Mesquita, D. P.; Ferreira, Eugénio C.. "Application of near infrared spectroscopy as a
process analytical technology". 2017.
- Quintelas, Cristina; Mesquita, D. P.; Ferreira, Eugénio C.. "Removal of paracetamol by an activated sludge bioreactor". 2017.
- Mesquita, D. P.; Quintelas, Cristina; Ferreira, Eugénio C.. "Characterization of the effects of pharmaceuticals in activated
sludge using quantitative image analysis". 2017.
- Oliveira, Emanuel; Ferreira, Eugénio C.; Dias, Oscar. "Modelling interspecies interactions of syntrophic communities". 2017.
- Oliveira, Ana; Mesquita, Daniela P.; Amorim, Catarina L.; Amaral, A. L.; Ferreira, Eugénio C.; Loosdrecht, Mark V.; Castro,
Paula M. L.. "Extraction and characterization of extracellular polymeric substances from aerobic granular sludge from a full-scale
sequencing batch reactor in Portugal". 2017.
- Dias, Oscar; Santos, Sophia Torres; Ferreira, Eugénio C.; Rocha, I.. "Towards an improved version of Kluyveromyces lactis
genome-scale metabolic model". 2016.
- Quintelas, Cristina; Mesquita, D. P.; Ferreira, Eugénio C.. "Remoção de ibuprofeno por um sistema aeróbio de lamas ativadas".
2016.
- Sargo, Cíntia R .; Silva, Adilson J.; Giordano, Roberto C; Ferreira, Eugénio C.; Rocha, I.; Zangirolami, Teresa C.. "Produção
e consumo de acetato em cultivos de Salmonella typhimurium em condições aeróbias". 2015.
- Amaral, A. L.; Mesquita, D. P.; Braga, Adelaide; Belo, Isabel; Ferreira, Eugénio C.. "Evaluation of dimorphic Yarrowia lipolytica
strains growth in different culture media by quantitative image analysis". 2015.
- Dias, Oscar; Saraiva, João; Ferreira, Eugénio C.; Rocha, I.. "Towards a genome-scale metabolic model of the Streptococcus
pneumoniae R6 avirulent strain". 2015.
- Santos, Sílvio Roberto Branco; Martins, Ivone M.; Costa, Ana Rita Martins; Nóbrega, Franklin Luzia; Lavigne, Rob; Ferreira,
Eugénio C.; Azeredo, Joana. "Exploiting the proteins encoded in the genome of the broad host range Salmonella phage PVP-SE1".
2015.
- Quintelas, C.; Mesquita, D. P.; Lopes, João A.; Ferreira, Eugénio C.; Sousa, Clara Cecília Santana. "Near-infrared spectroscopy
for the detection and quantification of bacterial contaminations in pharmaceutical products". 2015.
- Belo, I.; Braga, A.; Mesquita, D.; Amaral, A.L.; Ferreira, E.C.. "Comparison of aroma production from castor oil by Yarrowia
lipolytica in airlift and STR bioreactors". Trabalho apresentado em EUROPEAN BIOTECHNOLOGY CONGRESS, 2015.
Publicado
- Silva, A.; Sargo, Cintia Regina; Zangirolami, Teresa Cristina; Giordano, Roberto de Campos; Rocha, Isabel; Ferreira, Eugénio
C.. "Metabolic profiling of secreted fermentative byproducts by Salmonella typhimurium". 2014.
- Dias, Oscar; Liu, Filipe; Rocha, Miguel; Ferreira, Eugénio C.; Rocha, I.; Rocha, Isabel. "Prediction of protein subunits using
KEGG BRITE". Trabalho apresentado em COBRA 2014 - 3rd Conference on Constraint-Based Reconstruction and Analysis, Charlottesville,
2014.
- Portela, C.; Villas-Bôas, S.; Rocha, I.; Ferreira, E.C.. "Genome scale metabolic network reconstruction of the pathogen Enterococcus
faecalis". 2013.
10.3182/20131216-3-IN-2044.00067
- Ferreira, Eugénio C.. "Bio-engineering Systems at MIT Portugal Program". 2013.
- Gomes, Daniel Gonçalves; Dias, Oscar; Ferreira, Eugénio C.; Domingues, Lucília; Rocha, I.. "Reconstruction of a genome-scale
metabolic model for the filamentous fungus Ashbya gossypii". 2013.
- Dias, Oscar; Gombert, Andreas Karoly; Ferreira, Eugénio C.; Rocha, I.. "iOD962 - the first genome-scale metabolic model of
Kluyveromyces lactis". 2013.
- Dias, Oscar; Gomes, Daniel Gonçalves; Ferreira, Eugénio C.; Domingues, Lucília; Rocha, I.. "Reconstructing genome-scale metabolic
models with merlin: the Ashbya gossypii case study". 2012.
- Dias, Oscar; Rocha, Miguel; Ferreira, Eugénio C.; Rocha, I.. "Assembling genome-wide transporter system annotations". 2012.
- Gomes, Daniel; Dias, Oscar; Ferreira, Eugénio C.; Rocha, Isabel. "Reconstruction of a genome-scale metabolic model for the
riboflavin producer fungus Ashbya gossypii". Trabalho apresentado em EMBO Conference Series - From Functional Genomics
to Systems Biology, Heidelberg, 2012.
Publicado
- Carneiro, S.; Carreira, Rafael; Ferreira, Eugénio C.; Rocha, I.. "Investigating metabolic responses in recombinant E. coli
cultures using metabolomics and fluxomics data". 2012.
- Gomes, Daniel Gonçalves; Dias, Oscar; Domingues, Lucília; Rocha, I.; Gomes, Daniel; Ferreira, Eugénio C.; Rocha, Isabel. "Revealing
new biotechnological potentialities of the riboflavin producer fungus Ashbya gossypii by means of the construction and analysis
of its metabolic network". Trabalho apresentado em MicroBiotec'11, Braga, 2011.
Publicado
- Dias, Oscar; Ferreira, Eugénio C.; Rocha, I.; Rocha, Isabel. "Towards genome-wide semi-automated transporter system annotations".
Trabalho apresentado em 12th International Conference on Systems Biology ¿ ICSB 2011, Mannheim, 2011.
- Soons, Z.I.T.A.; Ferreira, E.C.; Rocha, I.. "Selection of elementary modes for bioprocess control". 2010.
10.3182/20100707-3-BE-2012.0019
- Machado, D.; Costa, R.S.; Rocha, M.; Rocha, I.; Tidor, B.; Ferreira, E.C.. "Model transformation of metabolic networks using
a Petri net based framework". 2010.
- Costa, R.S.; Machado, D.; Ferreira, E.C.; Rocha, I.. "Evaluating the integration of proteomic data for the prediction of intracellular
fluxes after knockout experiments". 2010.
10.3182/20100707-3-BE-2012.0108
- Dias, O.; Rocha, M.; Ferreira, E.C.; Rocha, I.. "Merlin: Metabolic models reconstruction using genome-scale information".
2010.
10.3182/20100707-3-BE-2012.0076
- Rocha, I.; Maia, Paulo; Pinto, José Pedro Basto Gouveia Pereira; Vilaça, Paulo Ricardo Carvalho; Soares, Simão Pedro Pinho;
Nielsen, J.; Patil, K. R.; et al. "OptFlux: an open-source software platform for in silico metabolic engineering". 2010.
- Nobre, Clarisse; Santos, M.J.; Dominguez, Ana; Torres, Duarte; Peres, António M.; Rocha, Isabel; Ferreira, Eugénio C.; Rodrigues,
Lígia R.; Teixeira, José A.. "Adsorption equilibrium of fructose, glucose and sucrose for cationic resins in the sodium and
potassium form". 2009.
- Ferreira, Eugénio C.. "Systems Biology for the development of microbial cell factories". 2009.
- Rocha, I.; Veloso, Ana C. A.; Soons, Zita; Ferreira, Eugénio C.. "Modeling, monitoring and control of bioprocesses". 2009.
- Vilaça, Paulo; Maia, Paulo; Evangelista, Pedro; Ferreira, Eugénio C.; Rocha, Miguel; Rocha, I.. "A study on the effects of
using gene-reaction rules on in silico strain optimization". 2009.
- Rocha, I.; Maia, Paulo; Pinto, José P.; Evangelista, Pedro; Nielsen, Jens; Patil, Kiran Raosaheb; Ferreira, Eugénio C.; Rocha,
Miguel. "OptFlux: a software for metabolic engineering". 2009.
- Maia, Paulo; Ferreira, Eugénio C.; Rocha, Miguel; Rocha, I.. "Multi-criterion approaches for the in silico optimization of
mutant microorganisms". 2009.
- Carneiro, S.; Lourenço, Anália; Carreira, Rafael; Rocha, Miguel; Ferreira, Eugénio C.; Rocha, I.. "Uncovering mechanisms underlying
the Escherichia coli stringent response: application of text mining approaches to identify meaningful relations in text documents".
2009.
- Carneiro, S.; Lourenço, Anália; Carreira, Rafael; Rocha, Miguel; Ferreira, Eugénio C.; Rocha, I.. "Digging out evidences on
escherichia coli stringent response from scientific literature". 2009.
- Lourenço, Anália; Carneiro, S.; Carreira, Rafael; Rocha, Miguel; Rocha, I.; Ferreira, Eugénio C.. "Bringing text miners and
biologists closer together". 2009.
- Lourenço, A.; Carneiro, S.; Carreira, R.; Rocha, M.; Rocha, I.; Ferreira, E.. "A tool for the automatic and manual annotation
of biomedical documents". 2008.
- Loureno, A.; Carreira, R.; Carneiro, S.; Maia, P.; Glez-Peña, D.; Fdez-Riverola, F.; Ferreira, E.C.; Rocha, I.; Rocha, M..
"A framework for the development of biomedical text mining software tools". 2008.
10.1109/BIBE.2008.4696707
- Mendes, R.; Lourenço, A.; Carneiro, S.; Rocha, M.; Rocha, I.; Ferreira, E.C.. "A framework for the integrated analysis of
metabolic and regulatory networks". 2008.
10.1109/BIBE.2008.4696727
- Maia, P.; Rocha, I.; Ferreira, E.C.; Rocha, M.. "Evaluating evolutionary multiobjective algorithms for the in silico optimization
of mutant strains". 2008.
10.1109/BIBE.2008.4696733
- Rocha, I.; Veloso, A.; Carneiro, S.; Ferreira, E.; Costa, R.. "Implementation of a specific rate controller in a fed-batch
E. coli fermentation". 2008.
10.3182/20080706-5-KR-1001.3513
- Mesquita, Daniela P.; Dias, Oscar; Amaral, António L.; Ferreira, Eugénio C.. "Evaluation of activated sludge systems by image
analysis procedures (oral presentation)". Trabalho apresentado em International Symposium on Sanitary and Environmental
Engineering: SIDISA 08, Florence, 2008.
Publicado
- Mesquita, Daniela P.; Dias, Oscar; Amaral, António L.; Ferreira, Eugénio C.. "Evaluation of activated sludge systems by image
analysis procedures". Trabalho apresentado em International Symposium on Sanitary and Environmental Engineering: SIDISA
08, Florence, 2008.
Publicado
- Dias, Oscar; Mesquita, Daniela P.; Amaral, António L.; Ferreira, Eugénio C.. "Dilution effects on aggregates and filaments
contents in automated image analysis methodologies". Trabalho apresentado em International Symposium on Sanitary and Environmental
Engineering : SIDISA 08, Florence, 2008.
Publicado
- Mesquita, Daniela P.; Dias, Oscar; Amaral, António L.; Ferreira, Eugénio C.; Mesquita, D. P.; Amaral, A. L.. "Relationship
between sludge volume index and biomass structure within activated sludge systems". Trabalho apresentado em XVII Congresso
Brasileiro de Engenharia Química - COBEQ 2008, Recife, 2008.
Publicado
- Rocha, I.; Maia, Paulo; Mendes, Rui; Rocha, Miguel; Ferreira, Eugénio C.. "Evolutionary multiobjective algorithms for in silico
metabolic engineering". 2008.
10.2172/1056473
- A. Lourenço; A. Simões; J. J. Almeida; M. Rocha; I. Rocha; E. C. Ferreira. "An Ontology-Based Approach To Systems Biology
Literature Retrieval and Processing". Trabalho apresentado em 13th Portuguese Conference in Artificial Intelligence - EPIA
2007, Guimarães, 2007.
Publicado
- E. Herrera; J. Ramírez; B. Castillo; E. C. Ferreira. "Modelo Exacto Difuso de un Proceso Fermentativo Conmutado". Trabalho
apresentado em Congreso Nacional de Control Automático, AMCA 2007, Monterrey, Nuevo León, 2007.
Publicado
- J. C. Costa; M. M. Alves; E. C. Ferreira. "Integration of morphological and physiological data through Principal Component
Analysis to identify the effect of organic overloads on anaerobic granular sludge". Trabalho apresentado em 11th IWA World
Congress on Anaerobic Digestion, Brisbane, 2007.
Publicado
- J. C. Costa; I. Moita; E. C. Ferreira; M. M. Alves. "Morphology and physiology of anaerobic granular sludge exposed to organic
solvents". Trabalho apresentado em 11th IWA World Congress on Anaerobic Digestion, Brisbane, 2007.
Publicado
- I.A.C.P. Espirito-Santo; E. M. G. P. Fernandes; M. A. Araújo; E. C. Ferreira. "Cost Minimization of a WWTP Using an Augmented
Lagrangian Pattern Search Based Solver". Trabalho apresentado em 10th IWA Specialised Conference on Design, Operation and
Economics of Large Wastewater Treatment Plants, Vienna, 2007.
Publicado
- A. M. A. Dias; M. M. Alves; E. C. Ferreira. "Application of computational intelligence techniques for monitoring and prediction
of biological wastewater treatment systems". Trabalho apresentado em 3rd International IWA Conference on Automation in
Water Quality Monitoring - AutMoNet2007, Gent, 2007.
Publicado
- A. M. A. Dias; I. Moita; R. Pâscoa; M. M. Alves; J. A. Lopes; E. C. Ferreira; A. L. Amaral. "Activated sludge process monitoring
through in-situ NIR spectral analysis". Trabalho apresentado em 3rd International IWA Conference on Automation in Water
Quality Monitoring - AutMoNet2007, Gent, 2007.
Publicado
- Y. P. Ginoris; A. L. Amaral; E. C. Ferreira; M. A. Z. Coelho; A. Nicolau. "Aplicação de técnicas de análise de imagem e de
estatística multivariável no reconhecimento de protozoários e metazoários típicos de sistemas por lodos ativados". Trabalho
apresentado em 24º Congresso Brasileiro de Engenharia Sanitária e Ambiental, Belo Horizonte, 2007.
Publicado
- E. Herrera; B. Castillo; J. Ramírez; E. C. Ferreira. "Exact Fuzzy Observer for a Baker’s Yeast Fed-Batch Fermentation Process".
Trabalho apresentado em FUZZ-IEEE 2007 - IEEE International Conference on Fuzzy Systems, London, 2007.
Publicado • 10.1109/FUZZY.2007.4295502
- A. C. Veloso; I. Rocha; E. C. Ferreira; Veloso, A.C.A.; Rocha, I.; Ferreira, E.C.. "Estimation of biomass concentration using
interval observers in an E. coli fed-batch fermentation". Trabalho apresentado em 10th International IFAC Symposium on
Computer Applications on Biotechnology, Cancún, 2007.
Publicado
- E. Herrera; B. Castillo; J. Ramírez; E. C. Ferreira; Herrera, E.; Castillo, B.; Ramírez, J.; Ferreira, E.C.. "Takagi-Sugeno
Multiple-Model controller for a continuous baking yeast fermentation process". Trabalho apresentado em 10th International
IFAC Symposium on Computer Applications on Biotechnology, Cancún, 2007.
Publicado
- M. Rocha; J. P. Pinto; I. Rocha; E. C. Ferreira. "Optimization of Bacterial Strains with Variable-Sized Evolutionary Algorithms".
Trabalho apresentado em 2007 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology (CIBCB
2007), Honolulu, Hawaii, 2007.
Publicado
- Amaral, A.L.; Mota, M.; Ferreira, E.C.; Crispim, A.; A. L. Amaral; M. Mota; E. C. Ferreira; A. Crispim. "Image analysis methodology
to study the evolution of chromium penetration in chromium tannage". Trabalho apresentado em Computational Modelling of
Objects Represented in Images : Fundamentals, methods and applications, Coimbra, 2007.
Publicado
- Rocha, M.; Pinto, J.P.; Rocha, I.; Ferreira, E.. "Optimization of bacterial strains with variable-sized evolutionary algorithms".
2007.
- I.A.C.P. Espirito-Santo; E. M. G. P. Fernandes; M. A. Araújo; E. C. Ferreira. "Contribution of a Simple Sludge Treatment in
a WWTP Optimization Procedure". Trabalho apresentado em 5th WSEAS Int. Conf. on System Science and Simulation in Engineering,
Tenerife, Canary Islands, 2006.
Publicado
- A. I. F. Vaz; E. C. Ferreira; A. M. T. Mota. "Optimal trajectory approximation by cubic splines on fed-batch control problems".
Trabalho apresentado em 5th WSEAS Int. Conf. on System Science and Simulation in Engineering, Tenerife, 2006.
Publicado
- D. P. Mesquita; M. A. Z. Coelho; E. C. Ferreira. "Efeito do sal no desempenho de um reator batelada sequencial". Trabalho
apresentado em XVI Congresso Brasileiro de Engenharia Química - COBEQ2006, Santos, 2006.
Publicado
- I.A.C.P. Espirito-Santo; E. M. G. P. Fernandes; M. A. Araújo; E. C. Ferreira. "Optimization and simulation of secondary settler
models". Trabalho apresentado em 6th WSEAS International Conference on Simulation, Modelling and Optimization, Lisboa,
2006.
Publicado
- I. Rocha; E. C. Ferreira. "Specific growth rate regulation in a simulated fed-batch E. coli fermentation". Trabalho apresentado
em CONTROLO2006 – 7th Portuguese Conference on Automatic Control, Lisboa, 2006.
Publicado
- R. Mendes; I. Rocha; E. C. Ferreira; M. Rocha. "Comparison of algorithms for the optimization of fermentation processes".
Trabalho apresentado em 2006 IEEE Congress on Evolutionary Computation, Vancouver, 2006.
Publicado
- A. I. F. Vaz; E. C. Ferreira. "Optimal control of fed-batch processes with particle swarm optimization". Trabalho apresentado
em XXIX Congreso Nacional de Estadística e Investigación Operativa, Tenerife, 2006.
Publicado
- I. Rocha; A. C. Veloso; E. C. Ferreira. "Design of estimators for specific growth rate control in a fed-batch E. coli fermentation".
Trabalho apresentado em 5th MATHMOD Vienna – 5th Vienna Symposium on Mathematical Modelling, Vienna, 2006.
Publicado
- Mendes, R.; Rocha, I.; Ferreira, E.C.; Rocha, M.. "A comparison of algorithms for the optimization of fermentation processes".
2006.
- I.A.C.P. Espirito-Santo; E. M. G. P. Fernandes; M. M. Araújo; E. C. Ferreira. "Biological process optimal design in a wastewater
treatment plant". Trabalho apresentado em 6th World Congress on Structural and Multidisciplinary Optimization, Rio
de Janeiro, 2005.
Publicado
- P. Araya-Kroff; A. L. Amaral; M. Mota; E. C. Ferreira; M. M. Alves. "Análisis de imagen para la cuantificación de cambios
morfológicos en biomasa granular, inducidos por la presencia de nitrato en reactores EGSB". Trabalho apresentado em XVI
Congreso de Ingeniería Sanitaria y Ambiental Aidis – Chile, II Simposio Latinoamericano de Lodos y Biosólidos, Viña
del Mar, 2005.
Publicado
- E. Vivanco; A. Puñal; C. Pizarro; E. C. Ferreira; M. M. Alves; R. Chamy. "Effect of addition of an ammonium source in UASB
and EGSB reactors when treating low concentrated wastewater: granules morphology". Trabalho apresentado em VIII Latin American
Workshop and Symposium on Anaerobic Digestion, Montevideo, 2005.
Publicado
- S. Carneiro; A. C. Veloso; A. L. Amaral; I. Rocha; E. C. Ferreira. "Image analysis as a tool for viability and recombinant
protein production assessment during E. coli fermentations". Trabalho apresentado em CHEMPOR 2005 - 9th International Chemical
Engineering Conference, Coimbra, 2005.
Publicado
- A. C. Veloso; I. Rocha; E. C. Ferreira. "Design of Interval Observers for an E. coli Fed-Batch Fermentation with Uncertain
Inputs". Trabalho apresentado em CHEMPOR 2005 - 9th International Chemical Engineering Conference, Coimbra,
2005.
Publicado
- A. L. Amaral; O. Rocha; C. Gonçalves; A. A. Ferreira; E. C. Ferreira. "Development of Image Analysis Methods to Evaluate Barley
/ Malt Grain Size". Trabalho apresentado em CHEMPOR 2005 - 9th International Chemical Engineering Conference, Coimbra,
2005.
Publicado
- F. Vidigueira; E. C. Ferreira. "Estratégias de Minimização de Efluentes na Síntese e Integração de Processos". Trabalho apresentado
em CHEMPOR 2005 - 9th International Chemical Engineering Conference, Coimbra, 2005.
Publicado
- M. Rocha; I. Rocha; E. C. Ferreira. "A New Representation in Evolutionary Algorithms for the Optimization of Bioprocesses".
Trabalho apresentado em 2005 IEEE Congress on Evolutionary Computation, Edimburgo, 2005.
Publicado
- O. C. Pires; C. Palma; I. Moita; J. C. Costa; M. M. Alves; E. C. Ferreira. "A Fuzzy-Logic Based Expert System for Diagnosis
and Control of an Integrated Wastewater Treatment". Trabalho apresentado em 2nd Mercosur Congress on Chemical Engineering
– ENPROMER and 4th Mercosur Congress on Process Systems Engineering, Rio de Janeiro, 2005.
Publicado
- A. C. Veloso; I. Rocha; E. C. Ferreira. "On-Line Estimation of Biomass in an E. coli Fed-Batch Fermentation". Trabalho apresentado
em 2nd Mercosur Congress on Chemical Engineering – ENPROMER and 4th Mercosur Congress on Process Systems Engineering,
Rio de Janeiro, 2005.
Publicado
- A. L. Amaral; M. M. Alves; M. Mota; E. C. Ferreira. "Aplicações de Técnicas de Processamento e Análise de Imagem em Processos
Biotecnológicos". Trabalho apresentado em XV Simpósio Nacional de Bioprocessos – SINAFERM 2005, Recife, 2005.
Publicado
- R. Pinto; A. L. Amaral; J. Carvalho; E. C. Ferreira; F. M. Gama. "Determinação da Concentração de CBD-FITC Adsorvidos em Fibras
por Análise de Imagem". Trabalho apresentado em XV Simpósio Nacional de Bioprocessos – SINAFERM 2005, Recife,
2005.
Publicado
- M. da Motta; M. N. Pons; V. Lins da Silva; A. Clemente de Andrade; A. L. Amaral; E. C. Ferreira. "Utilização do Processamento
Digital de Imagens no Monitoramento de Estações de Tratamento de Efluentes". Trabalho apresentado em XV Simpósio Nacional
de Bioprocessos – SINAFERM 2005, Recife, 2005.
Publicado
- D.G.P. Pacífico; E. C. Ferreira; B. V. Kilikian. "Influência da velocidade específica de crescimento de Monascus purpureus
ATCC36928 na produção de pigmentos vermelhos". Trabalho apresentado em XV Simpósio Nacional de Bioprocessos – SINAFERM
2005, Recife, 2005.
Publicado
- O. C. Pires; C. Palma; J. C. Costa; I. Moita; M. M. Alves; E. C. Ferreira. "Knowledge-based fuzzy system for diagnosis and
control of an integrated biological wastewater treatment process". Trabalho apresentado em 2nd IWA Conference on Instrumentation,
Control and Automation, Busan, 2005.
Publicado
- Espírito-Santo, I.A.C.P.; Fernandas, E.M.G.P.; Araújo, M.M.; Ferreira, E.C.; E. M. G. P. Fernandes; I.A.C.P. Espirito-Santo;
M. M. Araújo; E. C. Ferreira. "NEOS server usage in wastewater treatment cost minimization". 2005.
Publicado
- Rocha, M.; Rocha, I.; Ferreira, E.. "A new representation in Evolutionary Algorithms for the optimization of bioprocesses".
2005.
- Veloso, A.C.A.; Rocha, I.; Ferreira, E.C.; A. C. Veloso; I. Rocha; E. C. Ferreira. "Design of on-line state estimators for
a recombinant E. coli FED-batch fermentation". Trabalho apresentado em 16th IFAC World Congress, Praha, 2005.
Publicado
- Carneiro, S.; Rocha, I.; Ferreira, Eugénio C.. "A systems biology approach for the characterization of metabolic bottlenecks
in recombinant protein production processes". 2005.
- Rocha, I.; Carneiro, S.; Veloso, Ana C. A.; Ferreira, Eugénio C.. "Application of genome-scale metabolic models to the optimization
of recombinant protein production in Escherichia coli". 2005.
- Rocha, Miguel; Rocha, I.; Ferreira, Eugénio C.; Veloso, Ana C. A.. "Evolutionary algorithms for offline and online optimization
of fed-batch fermentation processes". 2005.
- Veloso, Ana C. A.; Rocha, I.; Carvalho, S.; Carneiro, S.; Dias, T.; Peres, A. M.; Ferreira, Eugénio C.. "Escherichia coli
expressing a fluorescence protein as a model system for the optimization of environmental and processing conditions". 2005.
- E. M. G. P. Fernandes; I.A.C.P. Espirito-Santo; M. M. Araújo; E. C. Ferreira. "Optimization of wastewater treatment processes".
Trabalho apresentado em XXVIII Congreso de Estadística e Investigación Operativa, Cádiz, 2004.
Publicado
- I.A.C.P. Espirito-Santo; E. M. G. P. Fernandes; M. M. Araújo; E. C. Ferreira. "Optimização de um processo biológico de tratamento
de águas residuais". Trabalho apresentado em 8ª Conferência Nacional de Ambiente, Lisboa, 2004.
Publicado
- A. I. F. Vaz; E. C. Ferreira. "Air Pollution Control with Semi-Infinite Programming". Trabalho apresentado em Congreso
XXVIII Congreso Nacional de Estadística e Investigación Operativa (SEIO), Cádiz, 2004.
Publicado
- A. I. F. Vaz; E. C. Ferreira. "Optimização e Controlo da Poluição Atmosférica". Trabalho apresentado em 8ª Conferência
Nacional de Ambiente, Lisboa, 2004.
Publicado
- M. M. Alves; M. A. Pereira; A. L. Amaral; M. N. Pons; M. Mota; E. C. Ferreira. "Image Analysis as a Tool to Predict Washout
in Sludge Bed Reactors Through the Quantification of Microbial Filamentous Structures". Trabalho apresentado em 10th World
Congress on Anaerobic Digestion, Montreal, 2004.
Publicado
- P. Araya-Kroff; A. L. Amaral; E. C. Ferreira; P. Silva; M. Mota; M. M. Alves. "Monitoring granular stability in an industrial
UASB reactor treating brewery wastewater". Trabalho apresentado em 10th World Congress on Anaerobic Digestion, Montreal,
2004.
Publicado
- M. M. Alves; M. A. Pereira; A. L. Amaral; M. N. Pons; M. Mota; E. C. Ferreira; P. Araya-Kroff. "Image analysis to quantify
morphological changes in granular sludge induced by nitrate in EGSB reactors". Trabalho apresentado em 10th World Congress
on Anaerobic Digestion, Montreal, 2004.
Publicado
- E. C. Ferreira. "Blended Learning in Bioprocess Systems Engineering Education: Issues, Methods, and Applications". Trabalho
apresentado em ESCAPE-14: European Symposium on Computer Aided Process Engineering, Lisboa, 2004.
Publicado
- J. A. P. Coutinho; M. A. Z. Coelho; E. C. Ferreira; I. Belo. "Determination and modeling of yeast viability under stress conditions".
Trabalho apresentado em ESCAPE-14: European Symposium on Computer Aided Process Engineering, Lisboa, 2004.
Publicado
- I. Rocha; E. C. Ferreira. "Yield and kinetic parameters estimation and model reduction in a recombinant E. coli fermentation".
Trabalho apresentado em ESCAPE-14: European Symposium on Computer Aided Process Engineering, Lisboa, 2004.
Publicado
- Amaral, António Luís Pereira do; Neves, L.; Ferreira, Eugénio C.. "Desenvolvimento de métodos de análise de imagem para avaliação
do calibre de grãos da cevada/malte". 2004.
- Coelho, Maria Alice Z.; Amaral, A. Luís; Belo, Isabel; Mota, Manuel; Coutinho, João A. P.; Ferreira, Eugénio C.. "Use of image
analysis technique for the identification and pursuit of ethanol processes". 2004.
- V. Lubenova; I. Rocha; E. C. Ferreira. "Estimation of Biomass Concentration and Multiple Specific Growth Rates of Fed-Batch
Fermentation of Recombinant E. coli". Trabalho apresentado em International Conference Automatics and Informatics’03,
Sofia, 2003.
Publicado
- A. L. Amaral; S. Rodrigues; M. Mota; E. C. Ferreira. "Morphological Characterisation of Biomass in Wastewater Treatment using
Partial Least Squares". Trabalho apresentado em Second IASTED International Conference on Visualization, Imaging, and Image
Processing, Málaga, 2002.
Publicado
- P. Araya-Kroff; A. L. Amaral; L. Neves; E. C. Ferreira; M. M. Alves; M. Mota. "Image analysis as a tool to recognize anaerobic
granulation time". Trabalho apresentado em VII Latin American Workshop and Symposium on Anaerobic Digestion, Merida,
2002.
Publicado
- M. da Motta; A. L. Amaral; L. Neves; P. Araya-Kroff; E. C. Ferreira; M. M. Alves; M. Mota; et al. "Efeito da Diluição na Caracterização
da Biomassa de Sistemas de Tratamentos de Efluentes por Análise de Imagem". Trabalho apresentado em COBEQ 2002 - XIV Congresso
Brasileiro de Engenharia Quimica, Natal, 2002.
Publicado
- I. Rocha; E. C. Ferreira. "Model-Based Adaptive Control of Acetate Concentration During the Production of Recombinant Proteins
with E. coli". Trabalho apresentado em 15th IFAC World Congress on Automatic Control, Barcelona, 2002.
Publicado
- I. Rocha; E. C. Ferreira. "Optimisation Methods for Improving Fed-Batch Cultivation of E. coli Producing Recombinant Proteins".
Trabalho apresentado em 10th Mediterranean Conference on Control and Automation (MED2002), Lisbon, 2002.
Publicado
- Rocha, I.; Ferreira, E.C.. "Model-based adaptive control of acetate concentration during the production of recombinant proteins
with E. coli". 2002.
- A. L. Amaral; M. da Motta; M. N. Pons; H. Vivier; M. Mota; E. C. Ferreira. "Survey of a Wastewater Treatment Plant Microfauna
by Image Analysis". Trabalho apresentado em 8th International Chemical Engineering – CHEMPOR’2001, Aveiro, 2001.
Publicado
- A. L. Amaral; M. A. Pereira; L. Neves; M. da Motta; M. N. Pons; H. Vivier; M. Mota; E. C. Ferreira; M. M. Alves. "Characterisation
by image analysis of anaerobic sludge from two EGSB reactors treating oleic acid: automatic detection of granules disintegration".
Trabalho apresentado em 9th World Congress on Anaerobic Digestion, Antwerpen, 2001.
Publicado
- Alves, M.M.; Cavaleiro, A.J; Ferreira, E.C.; Amaral, A.L.; Mota, M.; Motta, M.; Vivier, H.; Pons, M.-N.. "Characterisation
by image analysis of anaerobic microbial aggregates under shock conditions". Trabalho apresentado em 4th International
Symposium on Environmental Biotechnology, Noordwijkerhout, 2000.
Publicado
- M. da Motta; M. N. Pons; H. Vivier; A. L. Amaral; E. C. Ferreira; M. Mota. "Study of Protozoa Population in Wastewater Treatment
Plants by Image Analysis". Trabalho apresentado em XIX Interamerican Congress of Chemical Engineering/XIV Brazilian Congress
of Chemical Engineering, Águas de São Pedro, 2000.
Publicado • 10.1590/S0104-66322001000100009
- V. Lubenova; E. C. Ferreira. "Adaptive Algorithms for Estimation of Multiple Biomass Growth Rates and Biomass Concentration
in a Class of Bioprocesses". Trabalho apresentado em CONTROLO'2000: 4th Portuguese Conference on Automatic Control,
Guimarães, 2000.
Publicado
- M. da Motta; M. N. Pons; N. Roche; A. L. Amaral; E. C. Ferreira; M. Mota. "Automated Monitoring of Activated Sludge Using
Image Analysis". Trabalho apresentado em 1st World Congress of the International Water Association, Paris, 2000.
Publicado
- J. Baeza; E. C. Ferreira; J. Lafuente. "Knowledge-based supervision and control of WWTP: A real-time implementation". Trabalho
apresentado em 4th International Symposium on Environmental Biotechnology, Noordwijkerhout, 2000.
Publicado
- M. da Motta; M. N. Pons; N. Roche; A. L. Amaral; E. C. Ferreira; M. Mota. "Analyse des Flocs Bactériens et de la Microfaune
des Boues Activées para Analyse d'Image". Trabalho apresentado em GRUTTEE - 3e Congrès Internatonal L'Eau et sa Réutilisation,
3rd International Research Conference Water Reuse - Water Treatment Plants Operation, Toulouse, 1999.
Publicado
- A. L. Amaral; M. Mota; E. C. Ferreira. "Aplicações de Técnicas de Análise de Imagem em Microbiologia Ambiental". Trabalho
apresentado em 6º Conferência Nacional sobre a Qualidade do Ambiente, Lisboa, 1999.
Publicado
- J. Baeza; E. C. Ferreira; J. Lafuente. "Knowledge-Based Distributed System for Supervision and Control of Wastewater Treatment
Processes". Trabalho apresentado em Water Quality International '98, Vancouver, 1998.
Publicado
- A. L. Amaral; M. M. Alves; M. Mota; E. C. Ferreira. "Morphological Characterisation of Microbial Aggregates by Image Analysis".
Trabalho apresentado em RecPad’97 - 9th Portuguese Conference on Pattern Recognition, Coimbra, 1997.
Publicado
- C. Rocha; E. C. Ferreira. "Identification of yield coefficients in a baker’s yeast model - An optimal design experimental
approach". Trabalho apresentado em III Congresso Ibérico de Biotecnologia - BIOTEC’96, Valladolid, 1996.
Publicado
- E. C. Ferreira; S. Feyo de Azevedo. "A New Adaptive Scheme for the Adaptive Linearizing Control of Bioprocesses". Trabalho
apresentado em 2nd Portuguese Control Conference on Automatic Control - CONTROLO 96, Porto, 1996.
Publicado
- Ferreira, E.C.; Feyo de Azevedo, S.; E. C. Ferreira; S. Feyo de Azevedo. "Adaptive linearizing control of bioreactors". Trabalho
apresentado em UKACC International Conference on CONTROL'96, Exete, 1996.
Publicado • 10.1049/cp:19960721
- Ferreira, Eugénio C.; Mota, Manuel. "Sistema de tratamento por biodiscos". Trabalho apresentado em 1ªs Jornadas sobre Tratamento
de Efluentes Vinícolas, 1994.
Publicado
- R. Oliveira; E. C. Ferreira; F. R. Oliveira; S. Feyo de Azevedo. "A Study on the Convergence of Observer-Based Kinetics Estimators
in Stirred Tank Bioreactors". Trabalho apresentado em 5th International Symposium on Process Systems Engineering, Kyongju,
1994.
Publicado
- E. C. Ferreira; F. R. Oliveira; S. Feyo de Azevedo. "Requisitos e realização de uma instalação experimental para estudos de
modelação e controlo em processos de fermentação". Trabalho apresentado em 1º Encontro Português de Controlo Automático
- CONTROLO 94, Lisboa, 1994.
Publicado
- Ferreira, Eugénio C.. "A disciplina de Instrumentação e Controlo na licenciatura em Engenharia Biológica". 1994.
- Ferreira, Eugénio C.; Mota, M.. "Lamas activadas - sistema de mistura completa". 1994.
- E. C. Ferreira; J. C. Duarte. "Aplicação de Técnicas de Estimativa em Linha em Engenharia de Bioprocessos". Trabalho apresentado
em CONGRESSO 89 da Ordem dos Engenheiros, Coimbra, 1989.
Publicado
|
Artigo em revista |
- Mariana Costa; Mesquita, Daniela P.; Salvador, Andreia F.; Silva, Ana Rita; Ferreira, Eugénio C.; Quintelas, Cristina. "Impact
assessment of carbamazepine on Aerobic Granular Sludge: monitoring morphology changes, EPS production, microbial dynamics
and toxicity". Science of the Total Environment (2025):
Submetido
- Melo, Antonio; Costa, Joana; Quintelas, Cristina; Amaral, António L.; Ferreira, Eugénio C.; Mesquita, Daniela P.. Autor correspondente:
Mesquita, Daniela P.. "Quantitative image analysis for assessing extracellular polymeric substances in activated sludge under
atrazine exposure". Separation and Purification Technology 349 (2024): 127831. http://dx.doi.org/10.1016/j.seppur.2024.127831.
Publicado • 10.1016/j.seppur.2024.127831
- Cristina Quintelas; Cláudia Rodrigues; Clara Sousa; Eugénio C. Ferreira; António L. Amaral. "Cookie composition analysis by
Fourier transform near infrared spectroscopy coupled to chemometric analysis". Food Chemistry (2024): https://doi.org/10.1016/j.foodchem.2023.137607.
10.1016/j.foodchem.2023.137607
- Fernando Cruz; João Capela; Eugénio C. Ferreira; Miguel Rocha; O. Dias. "BioISO: an objective-oriented application for assisting
the curation of genome-scale metabolic models". IEEE/ACM Transactions on Computational Biology and Bioinformatics (2024):
http://dx.doi.org/10.1109/tcbb.2023.3339972.
10.1109/tcbb.2023.3339972
- Ana M. S. Paulo; Oihane Salazar; Joana Costa; Daniela P. Mesquita; Eugénio C. Ferreira; Paula M. L. Castro; Catarina L. Amorim.
"Unravelling microbiome changes in aerobic granular sludge saline wastewater treatment using a slow stepwise salt increase
strategy". Environmental Science: Advances (2024): https://doi.org/10.1039/D4VA00248B.
10.1039/D4VA00248B
- Maria Salomé Duarte; G. Martins; Pedro Oliveira; Bruno Fernandes; Eugénio C. Ferreira; M. Madalena Alves; Frederico Lopes;
Pereira MA; Paulo Novais. "A Review of Computational Modeling in Wastewater Treatment Processes". ACS ES&T Water (2023):
http://dx.doi.org/10.1021/acsestwater.3c00117.
10.1021/acsestwater.3c00117
- Adelaide Braga; Daniela P. Mesquita; Ana Catarina Cordeiro; Isabel Belo; Eugénio C. Ferreira; A. Luís Amaral. "Monitoring
biotechnological processes through quantitative image analysis: Application to 2-phenylethanol production by Yarrowia lipolytica".
Process Biochemistry (2023): http://dx.doi.org/10.1016/j.procbio.2023.03.019.
10.1016/j.procbio.2023.03.019
- Daniela P. Mesquita; Cristina Quintelas; Eugénio C. Ferreira. "Fate and occurrence of microplastics in wastewater treatment
plants". Environmental Science: Advances (2023): https://doi.org/10.1039/D3VA00167A.
10.1039/D3VA00167A
- Antonio Melo; Joana Costa; Cristina Quintelas; Eugénio C. Ferreira; Daniela P. Mesquita. "Effects of desloratadine on activated
sludge: Behaviour of EPS and sludge properties". Journal of Environmental Chemical Engineering (2022): http://dx.doi.org/10.1016/j.jece.2022.108415.
10.1016/j.jece.2022.108415
- João Capela; Davide Lagoa; Ruben Rodrigues; Emanuel Cunha; Fernando Cruz; Ana Barbosa; José Bastos; et al. "merlin, an improved
framework for the reconstruction of high-quality genome-scale metabolic models". Nucleic Acids Research (2022): https://doi.org/10.1093/nar/gkac459.
10.1093/nar/gkac459
- Antonio Melo; Cristina Quintelas; Eugénio C. Ferreira; Daniela P. Mesquita. "The Role of Extracellular Polymeric Substances
in Micropollutant Removal". Frontiers in Chemical Engineering (2022): http://dx.doi.org/10.3389/fceng.2022.778469.
10.3389/fceng.2022.778469
- Leal, Cristiano; del Río, Angeles Val; Mesquita, Daniela P.; Amaral, António L.; Ferreira, Eugénio C.. "Prediction of sludge
settleability, density and suspended solids of aerobic granular sludge in the presence of pharmaceutically active compounds
by quantitative image analysis and chemometric tools". Journal of Environmental Chemical Engineering 10 2 (2022): 107136.
http://dx.doi.org/10.1016/j.jece.2022.107136.
Publicado • 10.1016/j.jece.2022.107136
- Cyntia Ely; Irina S. Moreira; João Paulo Bassin; Márcia W.C. Dezotti; Daniela P. Mesquita; Joana Costa; Eugénio C. Ferreira;
Paula M.L. Castro. "Treatment of saline wastewater amended with endocrine disruptors by aerobic granular sludge: Assessing
performance and microbial community dynamics". Journal of Environmental Chemical Engineering (2022): http://dx.doi.org/10.1016/j.jece.2022.107272.
10.1016/j.jece.2022.107272
- Joana G. Costa; Ana M.S. Paulo; Catarina L. Amorim; A. Luís Amaral; Paula M.L. Castro; Eugénio C. Ferreira; Daniela P. Mesquita.
"Quantitative image analysis as a robust tool to assess effluent quality from an aerobic granular sludge system treating industrial
wastewater". Chemosphere (2022): 132773-132773. https://doi.org/10.1016/j.chemosphere.2021.132773.
10.1016/j.chemosphere.2021.132773
- C. Quintelas; A. Braga; A. Cordeiro; E.C. Ferreira; I. Belo; R.N.M.J. Páscoa. "FT-NIR spectroscopy analysis for monitoring
the microbial production of 2-phenylethanol using crude glycerol as carbon source". LWT 155 (2022): 112951-112951.
https://doi.org/10.1016/j.lwt.2021.112951.
10.1016/j.lwt.2021.112951
- Silva, Sérgio A.; Val del Río, Angeles; Amaral, António L.; Ferreira, Eugénio C.; Madalena Alves, M.; Mesquita, Daniela P..
"Monitoring morphological changes from activated sludge to aerobic granular sludge under distinct organic loading rates and
increasing minimal imposed sludge settling velocities through quantitative image analysis". Chemosphere 286 (2022):
131637. http://dx.doi.org/10.1016/j.chemosphere.2021.131637.
10.1016/j.chemosphere.2021.131637
- Melo, António; Costa, Joana; Quintelas, Cristina; Ferreira, Eugénio C.; Mesquita, Daniela P.. "Effect of ibuprofen on extracellular
polymeric substances (EPS) production and composition, and assessment of microbial structure by quantitative image analysis".
Journal of Environmental Management 293 (2021): 112852. http://dx.doi.org/10.1016/j.jenvman.2021.112852.
10.1016/j.jenvman.2021.112852
- Paulo, A.M.S.; Amorim, C.L.; Costa, J.; Mesquita, D.P.; Ferreira, E.C.; Castro, P.M.L.. Autor correspondente: Paulo, A.M.S..
"High Carbon Load in Food Processing Industrial Wastewater is a Driver for Metabolic Competition in Aerobic Granular Sludge".
Frontiers in Environmental Science 9 (2021): 735607. http://dx.doi.org/10.3389/fenvs.2021.735607.
Publicado • 10.3389/fenvs.2021.735607
- Cristiano Leal; Angeles Val del Río; Eugénio C. Ferreira; Daniela Mesquita; António L. Amaral. "Validation of a quantitative
image analysis methodology for the assessment of the morphology and structure of aerobic granular sludge in the presence of
pharmaceutically active compounds". Environmental Technology & Innovation 23 (2021): 101639-101639. https://doi.org/10.1016/j.eti.2021.101639.
10.1016/j.eti.2021.101639
- Ana Forte; Fernando Dourado; André Mota; Belmira Neto; Miguel Gama; Eugénio Campos Ferreira. "Life cycle assessment of bacterial
cellulose production". The International Journal of Life Cycle Assessment (2021): https://doi.org/10.1007/s11367-021-01904-2.
10.1007/s11367-021-01904-2
- Ana S. Oliveira; Catarina L. Amorim; Daniela P. Mesquita; Eugénio C. Ferreira; Mark van Loosdrecht; Paula M.L. Castro. "Increased
extracellular polymeric substances production contributes for the robustness of aerobic granular sludge during long-term intermittent
exposure to 2-fluorophenol in saline wastewater". Journal of Water Process Engineering 40 (2021): 101977-101977. https://doi.org/10.1016%2Fj.jwpe.2021.101977.
10.1016/j.jwpe.2021.101977
- Jéssica Costa; Eugénio C. Ferreira; Cledir Santos. "COVID-19, Chikungunya, Dengue and Zika Diseases: An Analytical Platform
Based on MALDI-TOF MS, IR Spectroscopy and RT-qPCR for Accurate Diagnosis and Accelerate Epidemics Control". Microorganisms
9 4 (2021): 708-708. https://doi.org/10.3390/microorganisms9040708.
10.3390/microorganisms9040708
- Oliveira, Alexandre; Rodrigues, Joana; Ferreira, Eugénio Campos; Rodrigues, Lígia; Dias, Oscar. "A kinetic model of the central
carbon metabolism for acrylic acid production in Escherichia coli". PLOS Computational Biology 17 3 (2021): e1008704.
http://dx.doi.org/10.1371/journal.pcbi.1008704.
Acesso aberto • Publicado • 10.1371/journal.pcbi.1008704
- Ana M.S. Paulo; Catarina L. Amorim; Joana Costa; Daniela P. Mesquita; Eugénio C. Ferreira; Paula M.L. Castro. "Long-term stability
of a non-adapted aerobic granular sludge process treating fish canning wastewater associated to EPS producers in the core
microbiome". Science of The Total Environment 756 (2021): 144007-144007. https://doi.org/10.1016%2Fj.scitotenv.2020.144007.
10.1016/j.scitotenv.2020.144007
- C. Quintelas; A. Melo; M. Costa; D.P. Mesquita; E.C. Ferreira; A.L. Amaral. "Environmentally-friendly technology for rapid
identification and quantification of emerging pollutants from wastewater using infrared spectroscopy". Environmental Toxicology
and Pharmacology 80 (2020): 103458-103458. https://doi.org/10.1016%2Fj.etap.2020.103458.
10.1016/j.etap.2020.103458
- Ana S. Oliveira; Catarina L. Amorim; Miguel A. Ramos; Daniela P. Mesquita; Paulo Inocêncio; Eugénio C. Ferreira; Mark van
Loosdrecht; Paula M.L. Castro. "Variability in the composition of extracellular polymeric substances from a full-scale aerobic
granular sludge reactor treating urban wastewater". Journal of Environmental Chemical Engineering 8 5 (2020): 104156-104156.
https://doi.org/10.1016/j.jece.2020.104156.
10.1016/j.jece.2020.104156
- Beatriz S. Afonso; Ana G. Azevedo; Catarina Gonçalves; Isabel R. Amado; Ferreira, Eugénio C.; Lorenzo M. Pastrana; Miguel
Ângelo Cerqueira. "Bio-Based Nanoparticles as a Carrier of ß-Carotene: Production, Characterisation and In Vitro Gastrointestinal
Digestion". Molecules (2020): https://www.mdpi.com/1420-3049/25/19/4497.
10.3390/molecules25194497
- Cristiano S. Leal; Daniela P. Mesquita; António Luís Amaral; Almerinda M. Amaral; Eugénio C. Ferreira. "Environmental impact
and biological removal processes of pharmaceutically active compounds: The particular case of sulfonamides, anticonvulsants
and steroid estrogens". Critical Reviews in Environmental Science and Technology 50 7 (2020): 698-742. https://doi.org/10.1080/10643389.2019.1642831.
10.1080/10643389.2019.1642831
- Leal, Cristiano; Val del Río, Angeles; Mesquita, Daniela P.; Amaral, António L.; Castro, Paula M.L.; Ferreira, Eugénio C..
"Sludge volume index and suspended solids estimation of mature aerobic granular sludge by quantitative image analysis and
chemometric tools". Separation and Purification Technology 234 116049 (2020): http://dx.doi.org/10.1016/j.seppur.2019.116049.
Publicado • 10.1016/j.seppur.2019.116049
- Quintelas, C.; Mesquita, D.P.; Torres, A.M.; Costa, I.; Ferreira, E.C.. "Degradation of widespread pharmaceuticals by activated
sludge: Kinetic study, toxicity assessment, and comparison with adsorption processes". Journal of Water Process Engineering
33 (2020): http://www.scopus.com/inward/record.url?eid=2-s2.0-85074771132&partnerID=MN8TOARS.
10.1016/j.jwpe.2019.101061
- Soares da Silva, Francisco A. G.; Fernandes, Marta; Souto, António Pedro; Ferreira, Eugénio C.; Dourado, Fernando; Gama, Miguel.
"Optimization of bacterial nanocellulose fermentation using recycled paper sludge and development of novel composites". Applied
Microbiology and Biotechnology 103 21-22 (2019): 9143-9154. http://dx.doi.org/10.1007/s00253-019-10124-6.
Publicado • 10.1007/s00253-019-10124-6
- Cruz, Fernando; Lagoa, Davide; Mendes, João; Rocha, Isabel; Ferreira, Eugénio C.; Rocha, Miguel; Dias, Oscar. "SamPler – a
novel method for selecting parameters for gene functional annotation routines". BMC Bioinformatics 20 454 (2019): http://dx.doi.org/10.1186/s12859-019-3038-4.
Acesso aberto • Publicado • 10.1186/s12859-019-3038-4
- Sousa, Clara; Quintelas, Cristina; Augusto, Catarina; Ferreira, Eugénio C.; Páscoa, Ricardo N.M.J.. "Discrimination of Camellia
japonica cultivars and chemometric models: An interlaboratory study". Computers and Electronics in Agriculture 159
(2019): 28-33. http://dx.doi.org/10.1016/j.compag.2019.02.025.
Publicado • 10.1016/j.compag.2019.02.025
- Quintelas, C.; Mesquita, D.P.; Ferreira, E.C.; Amaral, A.L.. "Quantification of pharmaceutical compounds in wastewater samples
by near infrared spectroscopy (NIR)". Talanta 194 (2019): 507-513. http://www.scopus.com/inward/record.url?eid=2-s2.0-85055705375&partnerID=MN8TOARS.
10.1016/j.talanta.2018.10.076
- Correia, D.M.; Sargo, C.R.; Silva, A.J.; Santos, S.T.; Giordano, R.C.; Ferreira, E.C.; Zangirolami, T.C.; Ribeiro, M.P.A.;
Rocha, I.. "Mapping Salmonella typhimurium pathways using 13C metabolic flux analysis". Metabolic Engineering
52 (2019): 303-314. http://www.scopus.com/inward/record.url?eid=2-s2.0-85059931870&partnerID=MN8TOARS.
10.1016/j.ymben.2018.11.011
- Quintelas, Cristina; Braga, Adelaide; Mesquita, Daniela P; Amaral, Antonio L; Ferreira, Eugenio C; Belo, Isabel. "NIR spectroscopy
applied to the determination of 2-phenylethanol and l
-phenylalanine concentrations in culture medium of Yarrowia lipolytica". Journal of Chemical Technology & Biotechnology
94 3 (2018): 812-818. http://dx.doi.org/10.1002/jctb.5827.
Publicado • 10.1002/jctb.5827
- Quintelas, C.; Ferreira, E.C.; Lopes, J.A.; Sousa, C.. "An Overview of the Evolution of Infrared Spectroscopy Applied to Bacterial
Typing". Biotechnology Journal 13 1 (2018): http://www.scopus.com/inward/record.url?eid=2-s2.0-85034076838&partnerID=MN8TOARS.
10.1002/biot.201700449
- Genisheva, Z.; Quintelas, C.; Mesquita, D.P.; Ferreira, E.C.; Oliveira, J.M.; Amaral, A.L.. "New PLS analysis approach to
wine volatile compounds characterization by near infrared spectroscopy (NIR)". Food Chemistry 246 (2018): 172-178.
http://www.scopus.com/inward/record.url?eid=2-s2.0-85033386173&partnerID=MN8TOARS.
10.1016/j.foodchem.2017.11.015
- Dias, O.; Gomes, D.; Vilaça, P.; Cardoso, J.; Rocha, M.; Ferreira, E.C.; Rocha, I.. "Genome-Wide Semi-Automated Annotation
of Transporter Systems". IEEE/ACM Transactions on Computational Biology and Bioinformatics 14 2 (2017): 443-456. http://www.scopus.com/inward/record.url?eid=2-s2.0-85017164643&partnerID=MN8TOARS.
10.1109/TCBB.2016.2527647
- Silva, A.S.; Quintelas, C.; Ferreira, E.C.; Lopes, J.A.; Sousa, C.; Ana Sofia Silva; Cristina Quintelas; et al. "Exploiting
intrinsic fluorescence spectroscopy to discriminate between Acinetobacter calcoaceticus-Acinetobacter baumannii complex species".
RSC Advances 7 14 (2017): 8581-8588. http://www.scopus.com/inward/record.url?eid=2-s2.0-85011052384&partnerID=MN8TOARS.
10.1039/c6ra27531a
- Dias, O.; Basso, T.O.; Rocha, I.; Ferreira, E.C.; Gombert, A.K.. "Erratum to: Quantitative physiology and elemental composition
of Kluyveromyces lactis CBS 2359 during growth on glucose at different specific growth rates". Antonie van Leeuwenhoek,
International Journal of General and Molecular Microbiology (2017): http://www.scopus.com/inward/record.url?eid=2-s2.0-85031425390&partnerID=MN8TOARS.
10.1007/s10482-017-0948-x
- Mesquita, D.P.; Quintelas, C.; Amaral, A.L.; Ferreira, E.C.. "Monitoring biological wastewater treatment processes: recent
advances in spectroscopy applications". Reviews in Environmental Science and Biotechnology 16 3 (2017): 395-424. http://www.scopus.com/inward/record.url?eid=2-s2.0-85026806465&partnerID=MN8TOARS.
10.1007/s11157-017-9439-9
- Dias, O.; Basso, T.O.; Rocha, I.; Ferreira, E.C.; Gombert, A.K.. "Quantitative physiology and elemental composition of Kluyveromyces
lactis CBS 2359 during growth on glucose at different specific growth rates". Antonie van Leeuwenhoek, International Journal
of General and Molecular Microbiology (2017): 1-13. http://www.scopus.com/inward/record.url?eid=2-s2.0-85029147316&partnerID=MN8TOARS.
10.1007/s10482-017-0940-5
- Ramos, C.; Amorim, C.L.; Mesquita, D.P.; Ferreira, E.C.; Carrera, J.; Castro, P.M.L.. "Simultaneous partial nitrification
and 2-fluorophenol biodegradation with aerobic granular biomass: Reactor performance and microbial communities". Bioresource
Technology 238 (2017): 232-240. http://www.scopus.com/inward/record.url?eid=2-s2.0-85018489586&partnerID=MN8TOARS.
10.1016/j.biortech.2017.03.173
- Amaral, A.L.; Abreu, H.; Leal, C.; Mesquita, D.P.; Castro, L.M.; Ferreira, E.C.. "Quantitative image analysis of polyhydroxyalkanoates
inclusions from microbial mixed cultures under different SBR operation strategies". Environmental Science and Pollution
Research 24 17 (2017): 15148-15156. http://www.scopus.com/inward/record.url?eid=2-s2.0-85019269121&partnerID=MN8TOARS.
10.1007/s11356-017-9132-0
- Carneiro, Sónia; Villas-Bôas, Silas; Ferreira, Eugénio C.; Rocha, Isabel. "A Comparative Proteome Analysis of Escherichia
coli ¿relA Mutant Cells". Frontiers in Bioengineering and Biotechnology 4 (2016): http://dx.doi.org/10.3389/fbioe.2016.00078.
10.3389/fbioe.2016.00078
- Silva, S.; Tobaldini-Valerio, F.; Costa-De-Oliveira, S.; Henriques, M.; Azeredo, J.; Ferreira, E.C.; Lopes, J.A.; Sousa, C..
"Discrimination of clinically relevant: Candida species by Fourier-transform infrared spectroscopy with attenuated total reflectance
(FTIR-ATR)". RSC Advances 6 94 (2016): 92065-92072. http://www.scopus.com/inward/record.url?eid=2-s2.0-84989832895&partnerID=MN8TOARS.
10.1039/c6ra16769a
- Mesquita, D.P.; Amaral, A.L.; Ferreira, E.C.. "Estimation of effluent quality parameters from an activated sludge system using
quantitative image analysis". Chemical Engineering Journal 285 (2016): 349-357. http://www.scopus.com/inward/record.url?eid=2-s2.0-84944916774&partnerID=MN8TOARS.
10.1016/j.cej.2015.09.110
- Braga, A.; Mesquita, D.P.; Amaral, A.L.; Ferreira, E.C.; Belo, I.. "Quantitative image analysis as a tool for Yarrowia lipolytica
dimorphic growth evaluation in different culture media". Journal of Biotechnology 217 (2016): 22-30. http://www.scopus.com/inward/record.url?eid=2-s2.0-84947237883&partnerID=MN8TOARS.
10.1016/j.jbiotec.2015.10.023
- Oscar Dias; Miguel Rocha; Eugénio C. Ferreira; Isabel Rocha. "Reconstructing genome-scale metabolic models with merlin". Nucleic
Acids Research 43 8 (2015): 3899-3910. https://doi.org/10.1093/nar/gkv294.
10.1093/nar/gkv294
- Braga, A.; Mesquita, D.P.; Amaral, A.L.; Ferreira, E.C.; Belo, I.. "Aroma production by Yarrowia lipolytica in airlift and
stirred tank bioreactors: Differences in yeast metabolism and morphology". Biochemical Engineering Journal 93 (2015):
55-62. http://www.scopus.com/inward/record.url?eid=2-s2.0-84908047008&partnerID=MN8TOARS.
10.1016/j.bej.2014.09.006
- Quintelas, C.; Mesquita, D.P.; Lopes, J.A.; Ferreira, E.C.; Sousa, C.. "Near-infrared spectroscopy for the detection and quantification
of bacterial contaminations in pharmaceutical products". International Journal of Pharmaceutics 492 1-2 (2015): 199-206.
http://www.scopus.com/inward/record.url?eid=2-s2.0-84937775051&partnerID=MN8TOARS.
10.1016/j.ijpharm.2015.07.005
- Santos, S.B.; Carvalho, C.; Azeredo, J.; Ferreira, E.C.. "Correction: Population dynamics of a salmonella lytic phage and
its host: Implications of the host bacterial growth rate in modelling (PlosOne (2015) 10:8 (e0136007))". PLoS ONE 10
8 (2015): http://www.scopus.com/inward/record.url?eid=2-s2.0-84942853201&partnerID=MN8TOARS.
10.1371/journal.pone.0136007
- Mussatto, S.I.; Aguiar, L.M.; Marinha, M.I.; Jorge, R.C.; Ferreira, E.C.. "Economic analysis and environmental impact assessment
of three different fermentation processes for fructooligosaccharides production". Bioresource Technology 198 (2015):
673-681. http://www.scopus.com/inward/record.url?eid=2-s2.0-84943145312&partnerID=MN8TOARS.
10.1016/j.biortech.2015.09.060
- Mesquita, D.P.; Amaral, A.L.; Leal, C.; Oehmen, A.; Reis, M.A.M.; Ferreira, E.C.. "Polyhydroxyalkanoate granules quantification
in mixed microbial cultures using image analysis: Sudan Black B versus Nile Blue A staining". Analytica Chimica Acta
865 1 (2015): 8-15. http://www.scopus.com/inward/record.url?eid=2-s2.0-84932190726&partnerID=MN8TOARS.
10.1016/j.aca.2015.01.018
- Sargo, C.R.; Campani, G.; Silva, G.G.; Giordano, R.C.; Da Silva, A.J.; Zangirolami, T.C.; Correia, D.M.; Ferreira, E.C.; Rocha,
I.. "Salmonella typhimurium and Escherichia coli dissimilarity: Closely related bacteria with distinct metabolic profiles".
Biotechnology Progress (2015): http://www.scopus.com/inward/record.url?eid=2-s2.0-84936804684&partnerID=MN8TOARS.
10.1002/btpr.2128
- Gomes, D.; Aguiar, T.Q.; Dias, O.; Ferreira, E.C.; Domingues, L.; Rocha, I.. "Genome-wide metabolic re-annotation of Ashbya
gossypii: New insights into its metabolism through a comparative analysis with Saccharomyces cerevisiae and Kluyveromyces
lactis". BMC Genomics 15 1 (2014): http://www.scopus.com/inward/record.url?eid=2-s2.0-84908419443&partnerID=MN8TOARS.
10.1186/1471-2164-15-810
- Santos, S.B.; Carvalho, C.; Azeredo, J.; Ferreira, E.C.. "Population dynamics of a Salmonella lytic phage and its host: Implications
of the host bacterial growth rate in modelling". PLoS ONE 9 7 (2014): http://www.scopus.com/inward/record.url?eid=2-s2.0-84904651603&partnerID=MN8TOARS.
10.1371/journal.pone.0102507
- Rocha, M.; Mendes, R.; Rocha, O.; Rocha, I.; Ferreira, E.C.. "Optimization of fed-batch fermentation processes with bio-inspired
algorithms". Expert Systems with Applications 41 5 (2014): 2186-2195. http://www.scopus.com/inward/record.url?eid=2-s2.0-84890115029&partnerID=MN8TOARS.
10.1016/j.eswa.2013.09.017
- Mesquita, D.P.; Amaral, A.L.; Leal, C.; Carvalheira, M.; Cunha, J.R.; Oehmen, A.; Reis, M.A.M.; Ferreira, E.C.. "Monitoring
intracellular polyphosphate accumulation in enhanced biological phosphorus removal systems by quantitative image analysis".
Water Science and Technology 69 11 (2014): 2315-2323. http://www.scopus.com/inward/record.url?eid=2-s2.0-84902352343&partnerID=MN8TOARS.
10.2166/wst.2014.146
- Tavares, A.P.M.; Silva, R.P.; Amaral, A.L.; Ferreira, E.C.; Xavier, A.M.R.B.. "Image analysis technique as a tool to identify
morphological changes in Trametes versicolor pellets according to exopolysaccharide or laccase production". Applied Biochemistry
and Biotechnology 172 4 (2014): 2132-2142. http://www.scopus.com/inward/record.url?eid=2-s2.0-84896316313&partnerID=MN8TOARS.
10.1007/s12010-013-0675-3
- Dias, O.; Pereira, R.; Gombert, A.K.; Ferreira, E.C.; Rocha, I.. "iOD907, the first genome-scale metabolic model for the milk
yeast Kluyveromyces lactis". Biotechnology Journal 9 6 (2014): 776-790. http://www.scopus.com/inward/record.url?eid=2-s2.0-84901679540&partnerID=MN8TOARS.
10.1002/biot.201300242
- Pirotta, F.J.C.; Ferreira, E.C.; Bernardo, C.A.. "Energy recovery and impact on land use of Maltese municipal solid waste
incineration". Energy 49 1 (2013): 1-11.
Publicado • 10.1016/j.energy.2012.10.049
- Carneiro, Sónia; Ferreira, Eugénio C.; Rocha, Isabel; Ferreira, Eugénio C. "Metabolic responses to recombinant bioprocesses
in Escherichia coli". Journal of Biotechnology 164 3 (2013): 396-408.
Publicado • 10.1016/j.jbiotec.2012.08.026
- Costa, J. C.; Mesquita, D. P.; Amaral, A. L.; Alves, M. M.; Ferreira, E. C.. "Quantitative image analysis for the characterization
of microbial aggregates in biological wastewater treatment: a review". Environmental Science and Pollution Research
20 9 (2013): 5887-5912.
Publicado • 10.1007/s11356-013-1824-5
- Soons, Zita I. T. A.; Ferreira, Eugénio C; Patil, Kiran R; Rocha, Isabel; Fong, Stephen S.. "Identification of Metabolic Engineering
Targets through Analysis of Optimal and Sub-Optimal Routes". PLoS ONE 8 4 (2013): e61648-e61648.
Publicado • 10.1371/journal.pone.0061648
- Oliveira, H.; Melo, L. D. R.; Santos, S. B.; Nobrega, F. L.; Ferreira, E. C.; Cerca, N.; Azeredo, J.; Kluskens, L. D.. "Molecular
Aspects and Comparative Genomics of Bacteriophage Endolysins". Journal of Virology 87 8 (2013): 4558-4570.
Publicado • 10.1128/JVI.03277-12
- Mesquita, Daniela P; Leal, Cristiano; Cunha, Jorge R.; Oehmen, Adrian; Amaral, A. Luís; Reis, Maria A.M.; Ferreira, Eugénio
C. "Prediction of intracellular storage polymers using quantitative image analysis in enhanced biological phosphorus removal
systems". Analytica Chimica Acta 770 0 (2013): 36-44.
Publicado • 10.1016/j.aca.2013.02.002
- Amaral, António L.; Mesquita, Daniela P; Ferreira, Eugénio C. "Automatic identification of activated sludge disturbances and
assessment of operational parameters". Chemosphere 91 5 (2013): 705-710.
Publicado • 10.1016/j.chemosphere.2012.12.066
- Mesquita, D.P.; Amaral, A.L.; Ferreira, E.C.. "Activated sludge characterization through microscopy: A review on quantitative
image analysis and chemometric techniques". Analytica Chimica Acta 802 (2013): 14-28. http://www.scopus.com/inward/record.url?eid=2-s2.0-84886747965&partnerID=MN8TOARS.
10.1016/j.aca.2013.09.016
- Dias, Oscar; Gombert, Andreas K; Ferreira, Eugénio C; Rocha, Isabel. "Genome-wide metabolic (re-) annotation of Kluyveromyces
lactis". BMC Genomics 13 1 (2012): 517-517.
Publicado • 10.1186/1471-2164-13-517
- Carneiro, Sónia; Villas-Bôas, Silas; Ferreira, Eugénio; Rocha, Isabel. "Influence of the RelA Activity on E. coli Metabolism
by Metabolite Profiling of Glucose-Limited Chemostat Cultures". Metabolites 2 4 (2012): 717-732.
Publicado • 10.3390/metabo2040717
- Machado, D.; Soons, Z.; Patil, K. R.; Ferreira, E. C.; Rocha, I.. "Random sampling of elementary flux modes in large-scale
metabolic networks". Bioinformatics 28 18 (2012): i515-i521.
Publicado • 10.1093/bioinformatics/bts401
- Machado, Daniel; Costa, Rafael S.; Ferreira, Eugénio C.; Rocha, Isabel; Tidor, Bruce. "Exploring the gap between dynamic and
constraint-based models of metabolism". Metabolic Engineering 14 2 (2012): 112-119.
Publicado • 10.1016/j.ymben.2012.01.003
- Barrigón, José M.; Ramon, Ramon; Rocha, Isabel; Valero, Francisco; Ferreira, Eugénio C.; Montesinos, José L.. "State and specific
growth estimation in heterologous protein production by Pichia pastoris". AIChE Journal 58 10 (2012): 2966-2979.
Publicado • 10.1002/aic.12810
- Ordaz, Alberto; Oliveira, Catarina S.; Quijano, Guillermo; Ferreira, Eugenio C.; Alves, Madalena; Thalasso, Frédéric. "Kinetic
and stoichiometric characterization of a fixed biofilm reactor by pulse respirometry". Journal of Biotechnology 157
1 (2012): 173-179.
Publicado • 10.1016/j.jbiotec.2011.10.015
- Carneiro, Sónia; Lourenço, Anália; Ferreira, Eugénio C.; Rocha, Isabel. "Stringent response of Escherichia coli: revisiting
the bibliome using literature mining". Microbial Informatics and Experimentation 1 14 (2011): http://dx.doi.org/10.1186/2042-5783-1-14.
Acesso aberto • Publicado • 10.1186/2042-5783-1-14
- Machado, Daniel; Costa, Rafael S; Rocha, Miguel; Ferreira, Eugénio C; Tidor, Bruce; Rocha, Isabel. "Modeling formalisms in
Systems Biology". AMB Express 1 1 (2011): 45-45.
Publicado • 10.1186/2191-0855-1-45
- Carreira, Rafael; Carneiro, Sónia; Pereira, Rui; Rocha, Miguel; Rocha, Isabel; Ferreira, Eugénio C; Lourenço, Anália. "Semantic
annotation of biological concepts interplaying microbial cellular responses". BMC Bioinformatics 12 1 (2011): 460-460.
Publicado • 10.1186/1471-2105-12-460
- Mesquita, D.P.; Amaral, A.L.; Ferreira, E.C.. "Identifying different types of bulking in an activated sludge system through
quantitative image analysis". Chemosphere 85 4 (2011): 643-652.
Publicado • 10.1016/j.chemosphere.2011.07.012
- Oliveira, Catarina S.; Ordaz, Alberto; Ferreira, Eugénio C.; Alves, Madalena; Thalasso, Frédéric. "In situ pulse respirometric
methods for the estimation of kinetic and stoichiometric parameters in aerobic microbial communities". Biochemical Engineering
Journal 58-59 - (2011): 12-19.
Publicado • 10.1016/j.bej.2011.08.001
- Santos, S. B.; Kropinski, A. M.; Ceyssens, P.-J.; Ackermann, H.- W.; Villegas, A.; Lavigne, R.; Krylov, V. N.; et al. "Genomic
and Proteomic Characterization of the Broad-Host-Range Salmonella Phage PVP-SE1: Creation of a New Phage Genus". Journal
of Virology 85 21 (2011): 11265-11273.
Publicado • 10.1128/JVI.01769-10
- Soons, Zita I.T.A.; Ferreira, Eugénio C.; Rocha, Isabel. "Identification of minimal metabolic pathway models consistent with
phenotypic data". Journal of Process Control 21 10 (2011): 1483-1492.
Publicado • 10.1016/j.jprocont.2011.05.012
- Mesquita, Daniela P.; Ribeiro, Roberta R.; Amaral, António L.; Ferreira, Eugénio C.; Coelho, Maria Alice Z.. "Image analysis
application for the study of activated sludge floc size during the treatment of synthetic and real fishery wastewaters". Environmental
Science and Pollution Research 18 8 (2011): 1390-1397.
Publicado • 10.1007/s11356-011-0496-2
- Costa, R.S.; Machado, D.; Rocha, I.; Ferreira, E.C.. "Critical perspective on the consequences of the limited availability
of kinetic data in metabolic dynamic modelling". IET Systems Biology 5 3 (2011): 157-157.
Publicado • 10.1049/iet-syb.2009.0058
- Carneiro, Sónia; Villas-Bôas, Silas G.; Ferreira, Eugénio C.; Rocha, Isabel; Carneiro, S.; Villas-Bôas, S.G.; Ferreira, E.C.;
Rocha, I.. "Metabolic footprint analysis of recombinant Escherichia coli strains during fed-batch fermentations". Molecular
BioSystems 7 3 (2011): 899-910. http://www.scopus.com/inward/record.url?eid=2-s2.0-79951623012&partnerID=MN8TOARS.
Publicado • 10.1039/C0MB00143K
- Lourenco, A.; Carneiro, S.; Rocha, M.; Ferreira, E. C.; Rocha, I.. "Challenges in integrating Escherichia coli molecular biology
data". Briefings in Bioinformatics 12 2 (2011): 91-103.
Publicado • 10.1093/bib/bbq067
- Mesquita, D.P.; Amaral, A.L.; Ferreira, E.C.. "Characterization of activated sludge abnormalities by image analysis and chemometric
techniques". Analytica Chimica Acta 705 1-2 (2011): 235-242.
Publicado • 10.1016/j.aca.2011.05.050
- A. Lourenço; Carneiro, Sónia; J. P. Pinto; E. C. Ferreira; M. Rocha; Rocha, Isabel; Lourenço, A.; et al. "A study of the short
and long-term regulation of E. coli metabolic pathways". Journal of Integrative Bioinformatics 8 3 (2011): 183--. http://www.scopus.com/inward/record.url?eid=2-s2.0-84855554919&partnerID=MN8TOARS.
Publicado • 10.2390/biecoll-jib-2011-183
- Domingues, L.; Rocha, I.; Dourado, F.; Alves, M.M.; Ferreira, E.C.. "Virtual laboratories in (bio)chemical engineering education".
Education for Chemical Engineers 5 2 (2010): e13-e32.
Publicado • 10.1016/j.ece.2010.02.001
- Santos, S. B.; Fernandes, E.; Carvalho, C. M.; Sillankorva, S.; Krylov, V. N.; Pleteneva, E. A.; Shaburova, O. V.; et al.
"Selection and Characterization of a Multivalent Salmonella Phage and Its Production in a Nonpathogenic Escherichia coli Strain".
Applied and Environmental Microbiology 76 21 (2010): 7338-7342.
Publicado • 10.1128/AEM.00922-10
- Mesquita, D.P.; Dias, O.; Elias, R.A.V.; Amaral, A.L.; Ferreira, E.C.. "Dilution and Magnification Effects on Image Analysis
Applications in Activated Sludge Characterization". Microscopy and Microanalysis 16 05 (2010): 561-568.
Publicado • 10.1017/S1431927610093785
- Rocha, Isabel; Maia, Paulo; Evangelista, Pedro; Vilaça, Paulo; Soares, Simão; Pinto, José P; Nielsen, Jens; et al. "OptFlux:
an open-source software platform for in silico metabolic engineering". BMC Systems Biology 4 1 (2010): 45-45.
Publicado • 10.1186/1752-0509-4-45
- Costa, Rafael S.; Machado, Daniel; Rocha, Isabel; Ferreira, Eugénio C.. "Hybrid dynamic modeling of Escherichia coli central
metabolic network combining Michaelis–Menten and approximate kinetic equations". Biosystems 100 2 (2010): 150-157.
Publicado • 10.1016/j.biosystems.2010.03.001
- Mesquita, D.P.; Dias, O.; Amaral, A.L.; Ferreira, E.C.. "A Comparison between Bright Field and Phase-Contrast Image Analysis
Techniques in Activated Sludge Morphological Characterization". Microscopy and Microanalysis 16 02 (2010): 166-166.
Publicado • 10.1017/S1431927609991358
- Costa, J.C.; Alves, M.M.; Ferreira, E.C.. "A chemometric tool to monitor high-rate anaerobic granular sludge reactors during
load and toxic disturbances". Biochemical Engineering Journal 53 1 (2010): 38-43.
Publicado • 10.1016/j.bej.2008.12.006
- Lourenço, Anália; Carreira, Rafael; Glez-Peña, Daniel; Méndez, José R.; Carneiro, Sónia; Rocha, Luis M.; Díaz, Fernando; et
al. "BioDR: Semantic indexing networks for biomedical document retrieval". Expert Systems with Applications 37 4 (2010):
3444-3453.
Publicado • 10.1016/j.eswa.2009.10.044
- Morais, S.; Mata, T.M.; Ferreira, E.. "Life cycle assessment of soybean biodiesel and LPG as automotive fuels in Portugal".
Chemical Engineering Transactions 19 (2010): 267-272. http://www.scopus.com/inward/record.url?eid=2-s2.0-78650302566&partnerID=MN8TOARS.
Publicado • 10.3303/CET1019044
- Carneiro, Sonia. "Applying a Metabolic Footprinting Approach to Characterize the Impact of the Recombinant Protein Production
in Escherichia coli". Advances in Bioinformatics 74 (2010): 193-200.
10.1007/978-3-642-13214-8_25
- Ferreira, E.C.; Miller, W.M.. "10th International Chemical and Biological Engineering Conference - CHEMPOR 2008 - Integrating
Life Sciences & Engineering Special Section". Biochemical Engineering Journal 53 1 (2010): http://www.scopus.com/inward/record.url?eid=2-s2.0-78650522779&partnerID=MN8TOARS.
10.1016/j.bej.2009.10.004
- David F. M. Neri; Victor M. Balcão; Duarte P. M. Torres; Lígia R. M. Rodrigues; Rafael Costa; I. Rocha; E. C. Ferreira; Luiz
B. Carvalho Jr.; José A. Teixeira. "Galacto-oligossacharides production during lactose hydrolysis by free Aspergillus oryzae
beta-galactosidase and immobilized on magnetic polysiloxane-polyvinyl alcohol". Food Chemistry 115 1 (2009): 92-99.
http://hdl.handle.net/1822/8819.
Publicado • 10.1016/j.foodchem.2008.11.068
- Nobre, C.; Santos, M.J.; Dominguez, A.; Torres, D.; Rocha, O.; Peres, A.M.; Rocha, I.; et al. "Comparison of adsorption equilibrium
of fructose, glucose and sucrose on potassium gel-type and macroporous sodium ion-exchange resins". Analytica Chimica Acta
654 1 (2009): 71-76. http://hdl.handle.net/10198/3818.
Publicado • 10.1016/j.aca.2009.06.043
- Sarraguça, Mafalda C.; Paulo, Ana; Alves, Madalena M.; Dias, Ana M. A.; Lopes, João A.; Ferreira, Eugénio C.. "Quantitative
monitoring of an activated sludge reactor using on-line UV-visible and near-infrared spectroscopy". Analytical and Bioanalytical
Chemistry 395 4 (2009): 1159-1166.
Publicado • 10.1007/s00216-009-3042-z
- Santos, Sílvio B; Carvalho, Carla M; Sillankorva, Sanna; Nicolau, Ana; Ferreira, Eugénio C; Azeredo, Joana. "The use of antibiotics
to improve phage detection and enumeration by the double-layer agar technique". BMC Microbiology 9 1 (2009): 148-148.
Publicado • 10.1186/1471-2180-9-148
- Lourenço, Anália; Carreira, Rafael; Carneiro, Sónia; Maia, Paulo; Glez-Peña, Daniel; Fdez-Riverola, Florentino; Ferreira,
Eugénio C.; Rocha, Isabel; Rocha, Miguel. "@Note: A workbench for Biomedical Text Mining". Journal of Biomedical Informatics
42 4 (2009): 710-720.
Publicado • 10.1016/j.jbi.2009.04.002
- Mesquita, D.P.; Dias, O.; Dias, A.M.A.; Amaral, A.L.; Ferreira, E.C.. "Correlation between sludge settling ability and image
analysis information using partial least squares". Analytica Chimica Acta 642 1-2 (2009): 94-101.
Publicado • 10.1016/j.aca.2009.03.023
- Oliveira, Catarina S; Ordaz, Alberto; Alba, Joel; Alves, Madalena; Ferreira, Eugénio C; Thalasso, Frederic. "Determination
of Kinetic and Stoichiometric Parameters of Pseudomonas putida F1 by Chemostat and In Situ Pulse Respirometry". Chemical
Product and Process Modeling 4 2 (2009): ---.
Publicado • 10.2202/1934-2659.1304
- Costa, J.C.; Moita, I.; Ferreira, E.C.; Alves, M.M.. "Morphology and physiology of anaerobic granular sludge exposed to an
organic solvent". Journal of Hazardous Materials 167 1-3 (2009): 393-398.
Publicado • 10.1016/j.jhazmat.2008.12.130
- Abreu, A.A.; Danko, A.S.; Costa, J.C.; Ferreira, E.C.; Alves, M.M.. "Inoculum type response to different pHs on biohydrogen
production from l-arabinose, a component of hemicellulosic biopolymers". International Journal of Hydrogen Energy 34
4 (2009): 1744-1751.
Publicado • 10.1016/j.ijhydene.2008.12.020
- Carneiro, Sónia; Amaral, António L.; Veloso, Ana C. A.; Dias, Teresa; Peres, António M.; Ferreira, Eugénio C.; Rocha, Isabel.
"Assessment of physiological conditions in E. coli fermentations by epifluorescent microscopy and
image analysis". Biotechnology Progress 25 3 (2009): 882-891.
Publicado • 10.1002/btpr.134
- Mesquita, Daniela P; Amaral, Antonio L; Ferreira, Eugenio C; Coelho, Maria AZ. "Study of saline wastewater influence on activated
sludge flocs through automated image analysis". Journal of Chemical Technology & Biotechnology 84 4 (2009): 554-560.
Publicado • 10.1002/jctb.2078
- Costa, J.C.; Alves, M.M.; Ferreira, E.C.. "Principal component analysis and quantitative image analysis to predict effects
of toxics in anaerobic granular sludge". Bioresource Technology 100 3 (2009): 1180-1185.
Publicado • 10.1016/j.biortech.2008.09.018
- Costa, J.C.; Moita, I.; Abreu, A.A.; Ferreira, E.C.; Alves, M.M.. "Advanced monitoring of high-rate anaerobic reactors through
quantitative image analysis of granular sludge and multivariate statistical analysis". Biotechnology and Bioengineering
102 2 (2009): 445-456.
Publicado • 10.1002/bit.22071
- Veloso, A. C. A.; Rocha, I.; Ferreira, E. C.. "Monitoring of fed-batch E. coli fermentations with software sensors". Bioprocess
and Biosystems Engineering 32 3 (2009): 381-388.
Publicado • 10.1007/s00449-008-0257-x
- Mesquita, D. P.; Dias, O.; Amaral, A. L.; Ferreira, E. C.. "Monitoring of activated sludge settling ability through image
analysis: validation on full-scale wastewater treatment plants". Bioprocess and Biosystems Engineering 32 3 (2009):
361-367.
Publicado • 10.1007/s00449-008-0255-z
- Vaz, A. Ismael F.; Ferreira, Eugénio C.. "Air pollution control with semi-infinite programming". Applied Mathematical Modelling
33 4 (2009): 1957-1969.
Publicado • 10.1016/j.apm.2008.05.008
- Amaral, António L.; Rocha, Orlando; Gonçalves, Cristina; Ferreira, António A.; Ferreira, Eugénio C. "Application of image
analysis to the prediction of EBC barley kernel weight distribution". Industrial Crops and Products 30 3 (2009): 366-371.
Publicado • 10.1016/j.indcrop.2009.07.003
- Oliveira, C.S.; Ordaz, A.; Alba, J.; Alves, M.; Ferreira, E.C.; Thalasso, F.. "Determination of kinetic and stoichiometric
parameters of pseudomonas putida F1 by chemostat and pulse respirometry". Chemical Product and Process Modeling 4 2
(2009): http://www.scopus.com/inward/record.url?eid=2-s2.0-67650477799&partnerID=MN8TOARS.
- Ferreira, E.C.; Mota, M.. "Editorial: Special issue contributed by the 10th international chemical and biological engineering
conference - CHEMPOR 2008". Chemical Product and Process Modeling 4 4 (2009): http://www.scopus.com/inward/record.url?eid=2-s2.0-68349096077&partnerID=MN8TOARS.
- F´erreira, E.C.; Mota, M.. "Selected papers from 10th international chemical and biological engineering conference (chempor
2008): Editorial". International Journal of Chemical Engineering (2009): http://www.scopus.com/inward/record.url?eid=2-s2.0-68149167714&partnerID=MN8TOARS.
10.1155/2009/294627
- Carneiro, S.. "Metabolic footprinting of Escherichia coli grown in fed-batch fermentation during recombinant protein production".
New Biotechnology 25 (2009): S342-S342.
10.1016/j.nbt.2009.06.828
- Carneiro, Sónia; Amaral, António L.; Veloso, Ana C.A.; Dias, Teresa; Peres, António M.; Ferreira, Eugénio C.; Rocha, Isabel.
"Assessment of physiological conditions in e. Coli fermentations by epifluorescent microscopy and image analysis". (2009):
http://hdl.handle.net/10198/3231.
- R. Pinto; A. L. Amaral; E. C. Ferreira; M. Mota; M. Vilanova; K. Ruel; F. M. Gama. "Quantification of the CBD-FITC conjugates
surface coating on cellulose fibres". BMC Biotechnology 8 2 (2008): 1-7. http://www.biomedcentral.com/1472-6750/8/1.
Publicado • 10.1186/1472-6750-8-1
- A. Ordaz; C. S. Oliveira; R. Aguilar; M. Carrión; E. C. Ferreira; M. M. Alves; F. Thalasso; et al. "Kinetic and stoichiometric
parameters estimation in a nitrifying bubble column through "in-situ" pulse respirometry". Biotechnology and Bioengineering
100 1 (2008): 94-102. http://hdl.handle.net/1822/7799.
Publicado • 10.1002/bit.21723
- A. L. Amaral; Y. P. Ginoris; A. Nicolau; M. A. Z. Coelho; E. C. Ferreira. "Stalked protozoa identification by image analysis
and multivariable statistical techniques". Analytical and Bioanalytical Chemistry 391 4 (2008): 1321-1325. http://hdl.handle.net/1822/7946.
Publicado • 10.1007/s00216-008-1845-y
- A. M. A. Dias; I. Moita; R. Pâscoa; M. M. Alves; J. A. Lopes; E. C. Ferreira. "Activated sludge process monitoring through
in-situ NIR spectral analysis". Water Science & Technology 57 10 (2008): 1643-1650. http://hdl.handle.net/1822/8128.
Publicado • 10.2166/wst.2008.147
- Rocha, Miguel; Maia, Paulo; Mendes, Rui; Pinto, José P; Ferreira, Eugénio C; Nielsen, Jens; Patil, Kiran; et al. "Natural
computation meta-heuristics for the in silico optimization of microbial strains". BMC Bioinformatics 9 1 (2008): 499-499.
http://hdl.handle.net/1822/8742.
Publicado • 10.1186/1471-2105-9-499
- R. Pinto; A. L. Amaral; J. Carvalho; E. C. Ferreira; M. Mota; F. M. Gama. "Development of a method using image analysis and
CBD-FITC conjugates for the measurement of CBDs adsorbed onto cellulose fibers". Biotechnology Progress 23 6 (2007):
1492-1497.
Publicado • 10.1021/bp070026v
- Y. P. Ginoris; A. L. Amaral; A. Nicolau; M. A. Z. Coelho; E. C. Ferreira. "Raw Data Pre-Processing in the Protozoa and Metazoa
Identification by Image Analysis and Multivariate Statistical Techniques". Journal of Chemometrics 21 3-4 (2007): 156-164.
http://hdl.handle.net/1822/6947.
Publicado
- Y. P. Ginoris; A. L. Amaral; A. Nicolau; M. A. Z. Coelho; E. C. Ferreira; Ginoris, Y.P.; Amaral, A.L.; et al. "Recognition
of protozoa and metazoa using image analysis tools, discriminant analysis, neural networks and decision trees". Analytica
Chimica Acta 595 1-2 (2007): 160-169. http://hdl.handle.net/1822/6672.
Publicado • 10.1016/j.aca.2006.12.055
- Y. P. Ginoris; A. L. Amaral; A. Nicolau; M. A. Z. Coelho; E. C. Ferreira. "Development of an image analysis procedure for
identifying protozoa and metazoa typical of activated sludge system". Water Research 42 12 (2007): 2581-2589. http://hdl.handle.net/1822/6665.
Publicado
- A. A. Abreu; P. Araya-Kroff; J. C. Costa; E. C. Ferreira; M. M. Alves. "Quantitative image analysis as a diagnostic tool for
identifying structural changes during a revival process of anaerobic granular sludge". Water Research 41 7 (2007):
1473-1480. http://hdl.handle.net/1822/6308.
Publicado
- I.A.C.P. Espirito-Santo; E. M. G. P. Fernandes; M. M. Araújo; E. C. Ferreira. "Wasted Sludge Treatment Contributions in the
WWTP Total Cost". WSEAS Transactions on Information Science and Applications 4 4 (2007): 655-662. http://hdl.handle.net/1822/6409.
Publicado
- Espírito Santo, I.A.C.P.; Fernandes, E.M.G.P.; Araújo, M.M.; Ferreira, E.C.. "Wasted sludge treatment contributions in the
WWTP total cost". WSEAS Transactions on Information Science and Applications 4 4 (2007): 655-662. http://www.scopus.com/inward/record.url?eid=2-s2.0-34247389165&partnerID=MN8TOARS.
- Costa, J.C.; Abreu, A.A.; Ferreira, E.C.; Alves, M.M.. "Quantitative image analysis as a diagnostic tool for monitoring structural
changes of anaerobic granular sludge during detergent shock loads". Biotechnology and Bioengineering 98 1 (2007): 60-68.
http://www.scopus.com/inward/record.url?eid=2-s2.0-34548228628&partnerID=MN8TOARS.
10.1002/bit.21381
- Ginoris, Y.P.; Amaral, A.L.; Nicolau, A.; Coelho, M.A.Z.; Ferreira, E.C.. "Raw data pre-processing in the protozoa and metazoa
identification by image analysis and multivariate statistical techniques". Journal of Chemometrics 21 3-4 (2007): 156-164.
http://www.scopus.com/inward/record.url?eid=2-s2.0-34548770024&partnerID=MN8TOARS.
10.1002/cem.1054
- Coelho, M.A.Z.; Coutinho, J.A.P.; Ferreira, E.C.; Mota, M.; Belo, I.; M. A. Z. Coelho; J. A. P. Coutinho; et al. "Analysis
of the effects of hyperbaric gases on S. cerevisiae cell cycle through a morphological approach". Process Biochemistry
42 10 (2007): 1378-1383. http://www.scopus.com/inward/record.url?eid=2-s2.0-34548584876&partnerID=MN8TOARS.
Publicado • 10.1016/j.procbio.2007.07.003
- Ginoris, Y.P.; Amaral, A.L.; Nicolau, A.; Coelho, M.A.Z.; Ferreira, E.C.. "Development of an image analysis procedure for
identifying protozoa and metazoa typical of activated sludge system". Water Research 41 12 (2007): 2581-2589. http://www.scopus.com/inward/record.url?eid=2-s2.0-34248997191&partnerID=MN8TOARS.
10.1016/j.watres.2007.02.006
- Abreu, A.A.; Costa, J.C.; Araya-Kroff, P.; Ferreira, E.C.; Alves, M.M.. "Quantitative image analysis as a diagnostic tool
for identifying structural changes during a revival process of anaerobic granular sludge". Water Research 41 7 (2007):
1473-1480. http://www.scopus.com/inward/record.url?eid=2-s2.0-33847664282&partnerID=MN8TOARS.
10.1016/j.watres.2007.01.017
- Pires, O.C.; Palma, C.; Costa, J.C.; Moita, I.; Alves, M.M.; Ferreira, E.C.. "Knowledge-based fuzzy system for diagnosis and
control of an integrated biological wastewater treatment process". Water Science and Technology 53 4-5 (2006): 313-320.
http://dx.doi.org/10.2166/wst.2006.136.
Publicado • 10.2166/wst.2006.136
- A. I. F. Vaz; E. C. Ferreira; A. M. T. Mota. "Fed-batch trajectory optimal control problems with cubic splines". WSEAS
Transactions on Systems and Control 2 1 (2006): 207-213. http://hdl.handle.net/1822/5933.
Publicado
- I.A.C.P. Espirito-Santo; E. M. G. P. Fernandes; M. M. Araújo; E. C. Ferreira; Espírito Santo, I.A.C.P.; Fernandes, E.M.G.P.;
Araújo, M.M.; Ferreira, E.C.. "On the secondary settler models robustness by simulation". WSEAS Transactions on Information
Science and Applications 12 3 (2006): 2323-2330. http://hdl.handle.net/1822/5648.
Publicado
- O. C. Pires; C. Palma; J. C. Costa; I. Moita; E. C. Ferreira; M. M. Alves. "Knowledge-based fuzzy system for diagnosis and
control of an integrated biological wastewater treatment process". Water Science and Technology 53 4-5 (2006): 313-320.
http://hdl.handle.net/1822/4962.
Publicado
- A. L. Amaral; E. C. Ferreira. "Activated Sludge Monitoring of a Wastewater Treatment Plant using Image Analysis and Partial
Least Squares Regression". Analytica Chimica Acta 544 1-2 (2005): 246-253. http://hdl.handle.net/1822/2622.
Publicado
- M. A. Araújo; E. C. Ferreira; A. M. Cunha; M. Mota; Araújo, M.A.; Ferreira, E.C.; Cunha, A.M.; Mota, M.. "Determination of
diffusion coefficients fo glycerol and glucose from starch based thermoplastic compounds on simulated physiological solution".
Journal of Materials Science - Materials in Medicine 16 3 (2005): 239-246. http://hdl.handle.net/1822/2573.
Publicado • 10.1007/s10856-005-6685-0
- Amaral, A.L.; Ferreira, E.C.. "Activated sludge monitoring of a wastewater treatment plant using image analysis and partial
least squares regression". Analytica Chimica Acta 544 1-2 SPEC. (2005): 246-253. http://www.scopus.com/inward/record.url?eid=2-s2.0-20444479883&partnerID=MN8TOARS.
10.1016/j.aca.2004.12.061
- Coutinho, J.A.P.; Belo, I.; Ferreira, E.C.; Coelho, M.A.Z.; J. A. P. Coutinho; I. Belo; E. C. Ferreira; M. A. Z. Coelho. "Assessment
of yeast viability under hyperbaric conditions through a modeling approach". Journal of Chemical Technology and Biotechnology
80 8 (2005): 872-877. http://www.scopus.com/inward/record.url?eid=2-s2.0-22744446841&partnerID=MN8TOARS.
Publicado • 10.1002/jctb.1248
- Veloso, Ana C.A.; Rocha, I.; Ferreira, E.C.. "Identification of Yield Coefficients in an E.coli Model – An Optimal Experimental
Design Using Genetic Algorithms". IFAC Proceedings Volumes 37 3 (2004): 43-48. http://dx.doi.org/10.1016/s1474-6670(17)32557-0.
Publicado • 10.1016/s1474-6670(17)32557-0
- A. L. Amaral; M. A. Pereira; M. da Motta; M. N. Pons; M. Mota; E. C. Ferreira; M. M. Alves; et al. "Development of Image Analysis
Techniques as a Tool to Detect and Quantify Morphological Changes in Anaerobic Sludge: II. Application to a Granule Deterioration
Process Triggered by Contact With Oleic Acid". Biotechnology and Bioengineering 87 2 (2004): 194-199. http://hdl.handle.net/1822/1419.
Publicado • 10.1002/bit.20129
- P. Araya-Kroff; A. L. Amaral; L. Neves; E. C. Ferreira; M. N. Pons; M. Mota; M. M. Alves; et al. "Development of Image Analysis
Techniques as a Tool to Detect and Quantify Morphological Changes in Anaerobic Sludge: I. Application to a Granulation Process".
Biotechnology and Bioengineering 87 2 (2004): 185-193. http://hdl.handle.net/1822/1322.
Publicado • 10.1002/bit.20207
- M. A. Z. Coelho; I. Belo; R. Pinheiro; A. L. Amaral; M. Mota; J. A. P. Coutinho; E. C. Ferreira; et al. "Effect of hyperbaric
stress on yeast morphology: study by automated image analysis". Applied Microbiology and Biotechnology 66 3 (2004):
318-324. http://hdl.handle.net/1822/1405.
Publicado • 10.1007/s00253-004-1648-9
- E. C. Ferreira; R. Lima; R. Salcedo; Ferreira, E.C.; Lima, R.; Salcedo, R.. "Spreadsheets in Chemical Engineering Education
- A Tool in Process Design and Process Integration". International Journal of Engineering Education 20 6 (2004): 928-938.
http://hdl.handle.net/1822/1457.
Publicado
- Amaral, A.L.; Da Motta, M.; Pons, M.N.; Vivier, H.; Roche, N.; Mota, M.; Ferreira, E.C.; et al. "Survey of Protozoa and Metazoa
populations in wastewater treatment plants by image analysis and discriminant analysis". Environmetrics 15 4 (2004):
381-390. http://www.scopus.com/inward/record.url?eid=2-s2.0-2942595894&partnerID=MN8TOARS.
Publicado • 10.1002/env.652
- V. Lubenova; I. Rocha; E. C. Ferreira. "Estimation of multiple biomass growth rates and biomass concentration in a class of
bioprocesses". Bioprocess and Biosystems Engineering 25 6 (2003): 395-406. http://hdl.handle.net/1822/132.
Publicado • 10.1007/s00449-003-0325-1
- F. M. Kawasse; P. F. Amaral; M. H. M. Rocha-Leão; M. A. Z. Coelho; A. L. Amaral; E. C. Ferreira. "Morphological Analysis of
Yarrowia lipolytica under Stress Conditions through Image Processing". Bioprocess and Biosystems Engineering 25 6 (2003):
371-375. http://hdl.handle.net/1822/145.
Publicado • 10.1007/s00449-003-0319-z
- M. da Motta; M. N. Pons; N. Roche; H. Vivier; A. L. Amaral; E. C. Ferreira; M. Mota. "Estudo do Funcionamento de Estações
de Tratamento de Esgotos por Análise de Imagem: Validações e Estudo de Caso". Engenharia Sanitária e Ambiental 8 3
(2003): 170-181. http://hdl.handle.net/1822/126.
Publicado
- Pereira, M.A.; Roest, K.; Stams, A.J.M.; Akkermans, A.D.L.; Amaral, A.L.; Pons, M.-N.; Ferreira, E.C.; et al. "Image analysis,
methanogenic activity measurements, and molecular biological techniques to monitor granular sludge from an EGSB reactor fed
with oleic acid". Water Science & Technology 47 5 (2003): 181-188. http://www.scopus.com/inward/record.url?eid=2-s2.0-0242684611&partnerID=MN8TOARS.
Publicado
- Dias, N.; Amaral, A.L.; Ferreira, E.C.; Lima, N.; N. Dias; A. L. Amaral; E. C. Ferreira; N. Lima. "Automated image analysis
to improve bead ingestion toxicity test counts in the protozoan Tetrahymena pyriformis". Letters in Applied Microbiology
37 3 (2003): 230-233. http://www.scopus.com/inward/record.url?eid=2-s2.0-0042880000&partnerID=MN8TOARS.
Publicado • 10.1046/j.1472-765X.2003.01382.x
- I. Rocha; E. C. Ferreira. "On-line simultaneous monitoring of glucose and acetate with FIA during high cell density fermentation
of recombinant E. coli". Analytica Chimica Acta 462 2 (2002): 293-304. http://hdl.handle.net/1822/130.
Publicado • 10.1016/S0003-2670(02)00347-1
- R. Oliveira; E. C. Ferreira; S. Feyo de Azevedo. "Stability, dynamics of convergence, and tuning of observer-based kinetics
estimators". Journal of Process Control 12 2 (2002): 311-323. http://hdl.handle.net/1822/144.
Publicado • 10.1016/S0959-1524(01)00031-2
- M. da Motta; M. N. Pons; H. Vivier; N. Roche; A. L. Amaral; E. C. Ferreira; M. Mota. "Reconnaissance Semi-Automatique de la
Microfaune des Boues Activés des Stations de Traitment d´Eaux Usées: Protorec V2.0". Récents Progrés en Génie des Procédés
15 78 (2001): 167-172. https://repositorium.sdum.uminho.pt/handle/1822/1740.
Publicado
- N. J. Ribeiro; O. C. Pires; M. Mota; E. C. Ferreira; M. M. Alves. "Influence of up-flow velocity on the performance of an
anaerobic filter under oleic acid overloads". Biotechnology Letters 23 22 (2001): 1833-1839. http://hdl.handle.net/1822/149.
Publicado • 10.1023/A:1012750507267
- E. C. Ferreira; R. Salcedo; Ferreira, E.C.; Salcedo, R.. "A Tool to Optimize VOC Removal During Absorption and Stripping".
Chemical Engineering 108 1 (2001): 94-98. http://hdl.handle.net/1822/127.
Publicado
- E. C. Ferreira; R. Salcedo. "Can Spreadsheet Solvers Solve Demanding Optimization Problems?". Computer Applications in
Engineering Education 9 1 (2001): 49-56. http://hdl.handle.net/1822/136.
Publicado • 10.1002/cae.1005
- M. da Motta; A. L. Amaral; M. N. Pons; E. C. Ferreira; H. Vivier; M. Mota. "Estudo por análise de imagem do comportamento
de uma estação de tratamento de efluentes sob condições transientes". Energias Renovables y Medio Ambiente 9 (2001):
49-55. http://hdl.handle.net/1822/131.
Publicado
- Da Motta, M.; Pons, M.N.; Vivier, H.; Amaral, A.L.; Ferreira, E.C.; Roche, N.; Mota, M.. "The study of protozoa population
in wastewater treatment plants by image analysis". Brazilian Journal of Chemical Engineering 18 1 (2001): 103-111.
http://www.scopus.com/inward/record.url?eid=2-s2.0-0035275965&partnerID=MN8TOARS.
- M. M. Alves; A. J. Cavaleiro; E. C. Ferreira; A. L. Amaral; M. Mota; M. da Motta; H. Vivier; M. N. Pons. "Characterization
by Image Analysis of Anaerobic Microbial Aggregates under Shock Conditions". Water Science & Technology 41 12 (2000):
207-214. http://hdl.handle.net/1822/1782.
Publicado
- M. Perrier; S. Feyo de Azevedo; E. C. Ferreira; D. Dochain. "Tuning of Observer-based Estimators: Theory and Application to
the On-line Estimation of Kinetic Parameters". Control Engineering Practice 8 4 (2000): 377-388. http://hdl.handle.net/1822/138.
Publicado • 10.1016/S0967-0661(99)00164-1
- Alves, M.; Ferreira, E.C.; Amaral, A.L.; Pereira, A.; Novais, J.M.; Mota, M.. "Staged and non-staged anaerobic filters: Performance
in relation to physical and biological characteristics of microbial aggregates". Journal of Chemical Technology and Biotechnology
75 7 (2000): 601-609. http://www.scopus.com/inward/record.url?eid=2-s2.0-0034235237&partnerID=MN8TOARS.
10.1002/1097-4660(200007)75:7<601::AID-JCTB255>3.0.CO;2-P
- Baeza, J.A.; Ferreira, E.C.; Lafuente, J.; J. Baeza; E. C. Ferreira; J. Lafuente. "Knowledge-based supervision and control
of wastewater treatment plant: A real-time implementation". Water Science & Technology 41 12 (2000): 129-137. http://www.scopus.com/inward/record.url?eid=2-s2.0-0033870486&partnerID=MN8TOARS.
Publicado
- Alves, M.; Cavaleiro, A.J.; Ferreira, E.C.; Amaral, A.L.; Mota, M.; Da Motta, M.; Vivier, H.; Pons, M.-N.. "Characterisation
by image analysis of anaerobic sludge under shock conditions". Water Science & Technology 41 12 (2000): 207-214. http://www.scopus.com/inward/record.url?eid=2-s2.0-0033626042&partnerID=MN8TOARS.
Publicado
- Amaral, A.L.; Baptiste, C.; Pons, M.N.; Nicolau, A.; Lima, N.; Ferreira, E.C.; Mota, M.; Vivier, H.. "Semi-automated recognition
of protozoa by image analysis". Biotechnology Techniques 13 2 (1999): 111-118. http://www.scopus.com/inward/record.url?eid=2-s2.0-0033037374&partnerID=MN8TOARS.
10.1023/A:1008850701796
- A. A. Vicente; M. Dluhý; E. C. Ferreira; J. A. Teixeira; Vicente, A.A.; Dluhý, M.; Ferreira, E.C.; Teixeira, J.A.. "Modelling
Diffusion-Reaction Phenomena in Yeast Flocs of Saccharomyces cerevisiae". Bioprocess Engineering 18 5 (1998): 335-342.
http://hdl.handle.net/1822/134.
Publicado • 10.1007/PL00008993
- Vicente, A.A.; Dluhý, M.; Ferreira, E.C.; Mota, M.; Teixeira, J.A.. "Mass transfer properties of glucose and O2in
Saccharomyces cerevisiae flocs". Biochemical Engineering Journal 2 1 (1998): 35-43. http://www.scopus.com/inward/record.url?eid=2-s2.0-0041763279&partnerID=MN8TOARS.
10.1016/S1369-703X(98)00015-1
- R. Oliveira; E. C. Ferreira; F. R. Oliveira; S. Feyo de Azevedo. "A Study on the Convergence of Observer-Based Kinetic Estimators
in Fed-Batch Fermentations". Journal of Process Control 6 6 (1996): 367-371. http://hdl.handle.net/1822/143.
Publicado • 10.1016/0959-1524(95)00037-2
|
Artigo em revista (magazine) |
- Ferreira, Eugénio C.. "A Universidade do Minho e os novos laboratórios colaborativos", Revista Spot, 2019, http://hdl.handle.net/1822/59870.
- E. C. Ferreira. "Gestão Ambiental na Universidade do Minho", Floresta e Ambiente, 2004, http://hdl.handle.net/1822/3443.
- E. C. Ferreira. "Nova Formação em Gestão Ambiental na Universidade do Minho", Ambiente Magazine, 2004, http://hdl.handle.net/1822/3487.
- E. C. Ferreira. "A Formação de Ambiente em Portugal", CentroAtlântico.pt Magazine, 2003, http://hdl.handle.net/1822/3441.
- E. C. Ferreira. "A Internet como Fonte de Informação para Engenharia", Engenharia e Construção, 1998
- E. C. Ferreira. "Fontes de Informação na Internet para Controlo e Automação", Robótica e Automação, 1997, http://hdl.handle.net/1822/3444.
- E. C. Ferreira. "A Internet como Fonte de Informação para Engenharia", Ingenium (revista da Ordem dos Engenheiros), 1996,
http://hdl.handle.net/1822/3445.
|
Capítulo de livro |
- Eugénio Campos Ferreira. "Publicação Científica, Ciência Aberta e Avaliação de Investigação — Breve Análise Crítica". 2023.
10.21814/uminho.ed.66.6
- Mesquita, Daniela P.; Quintelas, Cristina; Amaral, Antonio; Ferreira, Eugénio C.. "Quantitative Image Analysis as a Valuable
Tool to Assess Aerobic Wastewater Treatment Systems". In Emerging Technologies in Wastewater Treatment, 227-249. CRC
Press, 2023.
Publicado • 10.1201/9781003164982-15
- Quintelas, Cristina; Mesquita, Daniela; Ferreira, Eugénio Campos. "CHAPTER 2. Impact of Industrial Wastewater Discharge on
the Environment and Human Health". In Biological Treatment of Industrial Wastewater, 15-39. Royal Society of Chemistry,
2021.
10.1039/9781839165399-00015
- Ferreira, Eugénio C.. "Foreword". Sciendo, 2020.
- Dias, O.; Rocha, M.; Ferreira, E.C.; Rocha, I.. "Reconstructing high-quality large-scale metabolic models with merlin". In
Molecular and Cell Biology Methods for Fungi, 1-36. Humana Press, 2018.
Publicado • 10.1007/978-1-4939-7528-0_1
- Veloso, A.C.; Ferreira, E.C.. "Online Analysis for Industrial Bioprocesses". In Current Developments in Biotechnology and
Bioengineering, editado por Christian Larroche, Maria Angeles Sanroman, Guocheng Du, Ashok Pandey, 679-704. Elsevier,
2017.
Publicado • 10.1016/b978-0-444-63663-8.00023-9
- Mesquita, Daniela P.; Selvaggio, Gianluca; Cunha, Jorge R.; Leal, Cristiano S.; Amaral, A. Luís; Ferreira, Eugénio C.. "Image
Analysis for Automatic Characterization of Polyhydroxyalcanoates Granules". In Lecture Notes in Computer Science, 790-797.
Springer Berlin Heidelberg, 2013.
10.1007/978-3-642-39094-4_91
- Carvalho, Carla A. O. C. M.; Santos, Sílvio; Kropinski, Andrew M.; Ferreira, Eugénio C.; Azeredo, Joana. "Phages as Therapeutic
Tools to Control Major Foodborne Pathogens: Campylobacter and Salmonella". In Bacteriophages. Rijeka, Croácia: InTech,
2012.
Publicado • 10.5772/33473
- Carneiro, Sónia; Ferreira, Eugénio C.; Rocha, Isabel. "A Systematic Modeling Approach to Elucidate the Triggering of the Stringent
Response in Recombinant E. coli Systems". In 5th International Conference on Practical Applications of Computational Biology
& Bioinformatics (PACBB 2011), 313-320. Springer Berlin Heidelberg, 2011.
Publicado • 10.1007/978-3-642-19914-1_41
- Lourenço, Anália; Carneiro, Sónia; Pinto, José P.; Rocha, Miguel; Ferreira, Eugénio C.; Rocha, Isabel. "Interpreting the Regulatory
Interplay in E. coli Metabolic Pathways". In 5th International Conference on Practical Applications of Computational Biology
& Bioinformatics (PACBB 2011), 303-312. Springer Berlin Heidelberg, 2011.
Publicado • 10.1007/978-3-642-19914-1_40
- Rocha, O.; Nobre, C.; Dominguez, A.; Torres, D.; Faria, N.; Rodrigues, L.; Teixeira, J.A.; Ferreira, E.C.; Rocha, I.. "A Dynamical
Model for the Fermentative Production of Fructooligosaccharides". In 10th International Symposium on Process Systems Engineering:
Part A, 1827-1832. Elsevier, 2009.
Publicado • 10.1016/s1570-7946(09)70695-9
- Pinto, José P.; Dias, Oscar; Lourenço, Anália; Carneiro, Sónia; Ferreira, Eugénio C.; Rocha, Isabel; Rocha, Miguel. "Data
Integration Issues in the Reconstruction of the Genome-Scale Metabolic Model of Zymomonas Mobillis". In 2nd International
Workshop on Practical Applications of Computational Biology and Bioinformatics (IWPACBB 2008), 92-101. Springer Berlin
Heidelberg, 2009.
Publicado • 10.1007/978-3-540-85861-4_12
- Machado, Daniel; Costa, Rafael S.; Rocha, Miguel; Rocha, Isabel; Tidor, Bruce; Ferreira, Eugénio C.. "A Critical Review on
Modelling Formalisms and Simulation Tools in Computational Biosystems". In Distributed Computing, Artificial Intelligence,
Bioinformatics, Soft Computing, and Ambient Assisted Living, 1063-1070. Springer Berlin Heidelberg, 2009.
Publicado • 10.1007/978-3-642-02481-8_161
- Evangelista, Pedro; Rocha, Isabel; Ferreira, Eugénio C.; Rocha, Miguel. "A Software Tool for the Simulation and Optimization
of Dynamic Metabolic Models". In Distributed Computing, Artificial Intelligence, Bioinformatics, Soft Computing, and Ambient
Assisted Living, 1071-1078. Springer Berlin Heidelberg, 2009.
Publicado • 10.1007/978-3-642-02481-8_162
- Lourenço, Anália; Carneiro, Sónia; Ferreira, Eugénio C.; Carreira, Rafael; Rocha, Luis M.; Glez-Peña, Daniel; Méndez, José
R.; et al. "Biomedical Text Mining Applied to Document Retrieval and Semantic Indexing". In Distributed Computing, Artificial
Intelligence, Bioinformatics, Soft Computing, and Ambient Assisted Living, 954-963. Springer Berlin Heidelberg, 2009.
Publicado • 10.1007/978-3-642-02481-8_146
- Dias, Ana M. A.; Ferreira, Eugénio C.. "Computational Intelligence Techniques for Supervision and Diagnosis of Biological
Wastewater Treatment Systems". In Computational Intelligence Techniques for Bioprocess Modelling, Supervision and Control,
127-162. Springer Berlin Heidelberg, 2009.
Publicado • 10.1007/978-3-642-01888-6_5
- Evangelista, Pedro; Rocha, Isabel; Ferreira, Eugénio C.; Rocha, Miguel. "Evolutionary Approaches for Strain Optimization Using
Dynamic Models under a Metabolic Engineering Perspective". In Evolutionary Computation, Machine Learning and Data Mining
in Bioinformatics, 140-151. Springer Berlin Heidelberg, 2009.
Publicado • 10.1007/978-3-642-01184-9_13
- Costa, Rafael S.; Machado, Daniel; Rocha, Isabel; Ferreira, Eugénio C.. "Large Scale Dynamic Model Reconstruction for the
Central Carbon Metabolism of Escherichia coli". In Distributed Computing, Artificial Intelligence, Bioinformatics, Soft
Computing, and Ambient Assisted Living, 1079-1083. Springer Berlin Heidelberg, 2009.
Publicado • 10.1007/978-3-642-02481-8_163
- Valente, Eduardo; Rocha, Miguel; Ferreira, Eugénio C.; Rocha, Isabel. "Modelling of Biotechnological Processes – An Approach
Based on Artificial Neural Networks". In Computational Intelligence Techniques for Bioprocess Modelling, Supervision and
Control, 311-332. Springer Berlin Heidelberg, 2009.
Publicado • 10.1007/978-3-642-01888-6_11
- R. Mendes; I. Rocha; J. P. Pinto; E. C. Ferreira; M. Rocha. "Differential evolution for the offline and online optimization
of fed-batch fermentation processes". In Advances in Differential Evolution, 299-317. Vienna, Áustria: Springer, 2008.
Publicado • 10.1007/978-3-540-68830-3_13
- E. Herrera; B. Castillo; J. Ramírez; E. C. Ferreira. "Takagi-Sugeno Fuzzy Controller for a Switching Bioprocess: Sector Nonlinearity
Approach". In New Developments in Robotics, Automation and Control, 155-180. Vienna, Áustria: In-Tech Education and
Publishing, 2008.
Publicado
- E. C. Ferreira; S. Feyo de Azevedo. "Modelação, monitorização e controlo de reactores biológicos". In Reactores Biológicos
- Fundamentos e Aplicações, 193-230. Lisboa, Portugal: Lidel, 2007.
Publicado
- Rocha, Miguel; Pinto, José P.; Rocha, Isabel; Ferreira, Eugénio C.. "Evaluating Evolutionary Algorithms and Differential Evolution
for the Online Optimization of Fermentation Processes". In Evolutionary Computation,Machine Learning and Data Mining in
Bioinformatics, 236-246. Alemanha: Springer Berlin Heidelberg, 2007.
Publicado • 10.1007/978-3-540-71783-6_23
- Rocha, Miguel; Mendes, Rui; Maia, Paulo; Pinto, José P.; Rocha, Isabel; Ferreira, Eugénio C.. "Evaluating Simulated Annealing
Algorithms in the Optimization of Bacterial Strains". In Progress in Artificial Intelligence, 473-484. Alemanha: Springer
Berlin Heidelberg, 2007.
Publicado • 10.1007/978-3-540-77002-2_40
- Espírito-Santo, I. A. C. P.; Fernandes, Edite M. G. P.; Araújo, M. M.; Ferreira, E. C.. "How Wastewater Processes can be Optimized
Using LOQO". In Lecture Notes in Economics and Mathematical Systems, 435-455. Springer-Verlag, 2006.
Publicado • 10.1007/3-540-28258-0_26
- A. C. Veloso; I. Rocha; E. C. Ferreira. "Identification of yield coefficients in an E. coli model - An optimal experimental
design using genetic algorithms". In Computer Applications in Biotechnology, 43-48. London: Elsevier, 2005.
Publicado
- Rocha, Miguel; Neves, José; Veloso, Ana C.A.; Ferreira, Eugénio C.; Rocha, Isabel. "Evolutionary Algorithms for Static and
Dynamic Optimization of Fed-batch Fermentation Processes". In Adaptive and Natural Computing Algorithms, 288-291. Springer-Verlag,
2005.
10.1007/3-211-27389-1_69
- Rocha, Miguel; Neves, José; Rocha, Isabel; Ferreira, Eugénio C.. "Evolutionary Algorithms for Optimal Control in Fed-Batch
Fermentation Processes". In Applications of Evolutionary Computing, 84-93. Springer Berlin Heidelberg, 2004.
Publicado • 10.1007/978-3-540-24653-4_9
- E. C. Ferreira; J. A. Teixeira. "Biorreactores". In Biotecnologia: Fundamentos e Aplicações, 165-194. Lisboa, Portugal:
Lidel Edições Técnicas, 2003.
Publicado
- I. Rocha; E. C. Ferreira. "An integrated system for advanced monitoring and control of fed-batch fermentations of recombinant
E. coli". In Computer Applications in Biotechnology, 349-354. Oxford: Pergamon Press, 2002.
Publicado
- M. da Motta; A. L. Amaral; M. Casellas; M. N. Pons; C. Dagot; N. Roche; E. C. Ferreira; H. Vivier. "Characterisation of Activated
Sludge By Automated Image Analysis: Validation on Full-Scale Plants". In Computer Applications in Biotechnology, 427-431.
Oxford: Pergamon Press, 2002.
Publicado
- E. C. Ferreira; M. Mota; M. N. Pons; J. M. S. Cabral; J. Tramper. "Image Analysis and Multiphase Bioreactors". In Multiphase
Bioreactor Design, 25-52. London, Reino Unido: Taylor & Francis, 2001.
Publicado
- S. Feyo de Azevedo; P. Pimenta; F. R. Oliveira; E. C. Ferreira. "Computer-Based Studies on Bioprocess Engineering, II - Tools
for Process Operation". In Computer and Information Science Applications in Bioprocess Engineering, 27-49. Dordrecht:
Kluwer Academic Publishers, 1996.
Publicado
- R. Oliveira; E. C. Ferreira; S. Feyo de Azevedo. "Model-based estimation of reaction rates in stirred tank bioreactors". In
Computer Applications in Biotechnology, 259-263. Oxford: Elsevier Science Publishers, 1996.
Publicado
- S. Feyo de Azevedo; P. Pimenta; F. R. Oliveira; E. C. Ferreira; de Azevedo, S.Feyo; Pimenta, P.; Oliveira, F.; Ferreira, E..
"Studies on on-line state and parameter estimation through a real-time process simulator". In Modeling and Control of Biotechnical
Processes 1992 (2nd IFAC Symposium) and Computer Applications to Fermentation Technology (5th International Conference),
453-458. Oxford: Pergamon Press, 1992.
Publicado
- E. C. Ferreira; J. C. Duarte. "Dynamic modelling of complex enzymatic reactions". In Scientific Computing and Automation
(Europe) 1990, 211-220. Amsterdam: Elsevier Science Publishers, 1990.
Publicado
- Ferreira, E.C.; Duarte, J.C.. "Chapter 18 Dynamic Modelling of Complex Enzymatic Reactions". In Data Handling in Science
and Technology, 211-220. Amsterdam: Elsevier, 1990.
Publicado • 10.1016/S0922-3487(08)70168-0
- E. C. Ferreira; L. M. Pereira; S. Feyo de Azevedo; J. C. Duarte. "Parameter estimation of kinetics and modelling in methanogenic
fermentation of Methanosarcina barkeri". In Computer Applications in Fermentation Technology: Modelling and Control of
Biotechnological Processes, 217-220. London, Reino Unido: Elsevier Applied Science Publishers, 1989.
Publicado
|
Edição de livro |
- Ferreira, Eugénio C.; Paiva, Sandra. 2030 Sustainable Development Goals - UMinho Research and Innovation Open Days.
Braga: UMinho Editora. 2025.
Publicado • 10.21814/uminho.ed.195
- Ferreira, Eugénio C.; Pereira, Guilherme; Paiva, Sandra; Ruão, Teresa. Research and Innovation 2020.2021.2022. Braga,
Portugal: UMinho Editora. 2025.
Publicado • 10.21814/uminho.ed.143 • Editor
- E. C. Ferreira. BOOK OF ABSTRACTS OF CEB ANNUAL MEETING 2017. Braga, Portugal: Universidade do Minho. 2017.
Publicado • 10.21814/cebsam2017 • Editor
- E. C. Ferreira. Metabolic Pathway Analysis 2015 - Programme and Abstracts. Braga, Portugal. 2015.
Publicado • Editor
- E. C. Ferreira. Book of Abstracts of the 2nd Meeting of the Institute for Biotechnology and Bioengineering. Braga,
Portugal: Universidade do Minho, Departamento de Engenharia Biológica. 2010.
Publicado • Editor
- Teixeira, J.A.; Sanches, I.; Ferreira, E.C.; Fonseca, A.; Vicente, A.A.; Venâncio, A.; Oliveira, D.; et al. Book of Abstracts
of MICROBIOTEC09. Braga; Vilamoura, Portugal: Universidade do Minho, Departamento de Engenharia Biológica. 2009.
Publicado • Editor
- Ferreira, E.C.; Mota, M.. Book of Abstracts of the 10th International Chemical and Biological Engineering Conference -
CHEMPOR 2008. Braga: Universidade do Minho, Departamento de Engenharia Biológica. 2008.
Publicado • Editor
- E. C. Ferreira. Proceedings of the 10th International Chemical and Biological Engineering Conference - CHEMPOR 2008 (CD-ROM).
Braga, Portugal: Universidade do Minho, Departamento de Engenharia Biológica. 2008.
Publicado • Editor
- E. C. Ferreira. Engenharia Biológica – 20 Anos (1986-2006). Braga, Portugal: Universidade do Minho, Departamento de
Engenharia Biológica. 2006.
Publicado
- E. C. Ferreira; M. Mota. BIOTEC'98 - Book of Abstracts (IV Iberian Congress on Biotechnology, I Ibero-American Meeting
on Biotechnology). Braga, Portugal: Universidade do Minho. Departamento de Engenharia Biológica. 1998.
- E. C. Ferreira; S. Feyo de Azevedo; K. Ch. A. M. Luyben; P. Osseweijer. Proceedings of the 2nd European Symposium on Biochemical
Engineering Science. Porto, Portugal: Faculdade de Engenharia da Universidade do Porto. 1998.
Publicado • Editor
|
Livro |
- Ferreira, Eugénio C.; Sessão Comemorativa "20 anos da Licenciatura em Engenharia Biológica da Universidade do Minho", Braga,
2006. Passado, presente e futuro da Engenharia Biológica. Universidade do Minho. Departamento de Engenharia Biológica
(DEB). 2006.
- E. C. Ferreira; E. Rodrigues. Fontes de Informação em Ambiente. Famalicão, Portugal: Edições Centro Atlântico. 2002.
Publicado
|
Poster em conferência |
- Sargo, C. R.; Correia, Daniela M; Giordano, R. C.; Ferreira, Eugénio C.; Rocha, Isabel; Silva, Adilson J.; Zangirolami, T.
C.. "Analysis of Salmonella typhimurium pathways and metabolic model improvement". Trabalho apresentado em MPA2015 - Metabolic
Pathway Analysis, 2015.
- Nóbrega, F.L.; Oliveira, H.; Melo, Luís; Santos, S.B.; Cerca, N.; Ferreira, E.C.; Azeredo, J.; Kluskens, L.D.. "Insights into
phage endolysins". Trabalho apresentado em ioinformatics Open Days 2013, Braga, Portugal, 2013.
- Oliveira, H.; Melo, Luís; Nóbrega, F.L.; Santos, S.B.; Cerca, N.; Ferreira, E.C.; Azeredo, J.; Kluskens, L.D.. "Unraveling
the insights into phage endolysin association". Trabalho apresentado em Viruses of Microbes -- EMBO Conference, Brussels,
Belgium, 2012.
- Nobre, Clarisse; Dominguez, Ana; Torres, D.; Rocha, Orlando; Rocha, Isabel; Ferreira, E.C.; José António Couto Teixeira; Rodrigues,
L.R.. "Optimization of a fructooligosaccharides purification method using activated charcoal". Trabalho apresentado em MicroBiotec09,
2009.
- Nobre, Clarisse; Dominguez, Ana; Torres, D; Rocha, O.; Rocha, I.; José António Couto Teixeira; Ferreira, E.C.; Rodrigues,
L.R.. "Determination of fructo-oligosaccharides adsorption parameters using ion-exchange resins". Trabalho apresentado em
21st International Ion Chromatography Symposium (IICS 2009), 2009.
- A. Paulo; A. Dias; Mafalda Sarraguca; Joao A. Lopes; M. Alves; E. C. Ferreira. "Surveying an activated sludge reactor using
online UV-visible and NIR spectroscopy and chemometrics". Trabalho apresentado em SIDISA 08 - Proceedings of the International
Symposium on Sanitary and Environmental Engineering, 2008.
- Nobre, Clarisse; Santos, Maria João; Dominguez, A.; Torres, D.; Rodrigues, L.R.; Rocha, I.; Teixeira, J.A.; Ferreira, E.C..
"Fractionation of fructo-oligosaccharides by gel filtration". Trabalho apresentado em CHEMPOR 2008: Book of Abstracts of
the 10th International Chemical and Biological Engineering Conference, 2008.
- Nobre, Clarisse; Dominguez, Ana; Torres, D.; Rocha, O.; Rodrigues, L.; Rocha, I.; Teixeira, J.A.; Ferreira, E.C.. "Purification
of fructo-oligosaccharides by adsorption onto charcoal filters". Trabalho apresentado em 4th Probiotics, Prebiotics and
New Foods jointly with XXX International Congress on Microbial Ecology And Disease, 2007.
- Torres, D.; Dominguez, A.; Rodrigues, L.R.; Rocha, I.; Cardoso, S.M; Silva, A.M.S.; Dominguez, M.R.M.; et al. "Experimental
approach for prebiotic oligosaccharides fractionation and chemical characterization". Trabalho apresentado em International
Symposium on “Functional Foods in Europe – International Developments in Science and Health Claims", 2007.
- Dominguez, A.; Nobre, Clarisse; Torres, D.; Rocha, Orlando; Rodrigues, L.R.; Rocha, Isabel; Teixeira, J.A.; Lima, Nelson;
Ferreira, E.C.. "Production of Fructooligosaccharides by Aureobasidium sp. and Aspergillus sp.". Trabalho apresentado em IFT
Annual Meeting – Food Smarts, 2007.
- Nobre, Clarisse; Dominguez, A.; Torres, D.; Rocha, O.; Rodrigues, L.; Rocha, I.; Teixeira, J.A.; Ferreira, E.C.. "Purification
of fructo-oligosaccharides by nanofiltration". Trabalho apresentado em , XIIIth World Congress of Food science and technology,
Food is life, (IUFOST2006/1242), 2006.
- Dominguez, A.; Nobre, Clarisse; Torres, D.; Rodrigues, L.; Rocha, I.; Teixeira, J.A.; Lima, Nelson; Ferreira, E.C.. "Optimization
of fermentation conditions for fructooligosaccharides production by Aureobasidium". Trabalho apresentado em , World Congress
on Industrial Biotechnology and Bioprocessing, Toronto, Canada, 2006.
- Vicente, A.A.; Dluhý, M.; Ferreira, E.C.; Mota, M.; Teixeira, J.A.. "Determination of diffusion coefficients of glucose and
O2 in flocs of Saccharomyces cerevisiae". Trabalho apresentado em Proceedings of the 2nd ESBES, 1998.
- Vicente, A.A.; Ferreira, E.C.; Teixeira, J.A.. "Kinetics and Stoichiometry of a batch fermentation using a highly flocculent
strain of Saccharomyces cerevisiae for different aeration rates and initial sugar concentrations". Trabalho apresentado em
Comunicaciones del III Congreso Ibérico de Biotecnología, 1996.
|
Pré-impressão |
- Alexandre Oliveira; Joana Rodrigues; Eugénio Ferreira; Lígia Rodrigues; Oscar Dias. "A kinetic model of the central carbon
metabolism for acrylic acid production inEscherichia coli". 2020. https://doi.org/10.1101/2020.05.13.093294.
10.1101/2020.05.13.093294
|
Relatório |
- Ferreira, Eugénio C.; Araújo, Emília Rodrigues; Ramos, Isabel; Gomes, Manuela E.; Maciel, P.; Jerónimo, Patrícia; Ramada,
José António Seara Salgado; Isaías, Margarida. 2021. Proposta de plano para a igualdade de género da Universidade do Minho
(IGUM 2022-2024). http://hdl.handle.net/1822/75031.
- Reis, R. L.; Rodrigues, Eloy; Ferreira, Eugénio C.; Palha, Joana Almeida; González-Méijome, José Manuel; Gomes, Manuela E.;
Gonçalves, Miguel M.; et al. 2017. Estratégia institucional para a gestão dos dados de investigação: estudo e recomendações.
http://hdl.handle.net/1822/63930.
|
Resumo em conferência |
- Costa, Mariana; Mesquita, Daniela P.; Salvador, Andreia F.; Silva, Ana Rita; Ferreira, Eugénio C.; Quintelas, Cristina. "Treating
synthetic wastewater contaminated with carbamazepine using aerobic granular sludge in a sequential batch reactor". Trabalho
apresentado em 21º Encontro de Engenharia Sanitária e Ambiental - ENaSB, Braga, 2024.
Publicado
- Silva, S.A.; Duarte, M.S.; Amaral, A.L.; Ferreira, E.C.; Alves, M.M.; Mesquita, D.P.. "Assessing the influence of long-chain
fatty acids on aerobic granular sludge stability in a sequencing batch reactor (oral presentation)". Trabalho apresentado
em International Chemical and Biological Engineering Conference (CHEMPOR), Bragança, 2023.
- Melo, A.; Costa, J.; Quintelas, C.; Ferreira, E.C.; Mesquita, D.P.. "EPS and aggregates changes on activated sludge under
atrazine exposure (oral presentation)". Trabalho apresentado em International Chemical and Biological Engineering Conference
(CHEMPOR), Bragança, 2023.
- Silva, S.A.; Duarte, M.S.; Amaral, A.L.; Ferreira, E.C.; Lucas, M.S.; Alves, M.M.; Mesquita, D.P.. "The effect of oleate in
the biological nitrogen removal (oral presentation)". Trabalho apresentado em PYCheM 2023 - 8th Portuguese Young Chemists
Meeting, Vila Real, 2023.
Publicado
- Silva, S.A.; Duarte, M.S.; Amaral, Antonio; Ferreira, E.C.; Lucas, M.S.; Alves, M.M.; Mesquita, D.P.. Autor correspondente:
Silva, S.A.. "The effect of oleate in the biological nitrogen removal". Trabalho apresentado em 8th Portuguese Young Chemists
Meeting PYChem2023, Vila Real, 2023.
- Silva, S.A.; Duarte, M.S.; Amaral, Antonio; Ferreira, E.C.; Alves, M.M.; Mesquita, D.P.. "Assessing the influence of long-chain
fatty acids on aerobic granular sludge stability in a sequencing batch reactor". Trabalho apresentado em 14th International
Chemical Engineering Conference CHEMPOR2023, Bragança, 2023.
- Dias, Oscar; Rocha, Miguel; Ferreira, Eugénio C.; Rocha, Isabel; Rocha, I.. "MEtabolic models Reconstruction using genome
scaLe INformation (merlin) - assessment and validation". Trabalho apresentado em Copenhagen Biosciences Conferences - 7th
Conference: Cell Factories and Biosustainability, Copenhagen, 2015.
Publicado
- Dias, Oscar; Rocha, Miguel; Ferreira, Eugénio C.; Rocha, Isabel; Rocha, I.. "Merlin Latest Developments for Pathways Analysis".
Trabalho apresentado em MPA2015 - Metabolic Pathway Analysis 2015, Braga, 2015.
Publicado
- Mucha, Ângela; Nobrega, Franklin L.; Santos, Sílvio B.; Ferreira, Eugénio C.; Kluskens, Leon D.; Azeredo, Joana. "RecFinder
– a new tool to find phage proteins responsible for host recognition". Trabalho apresentado em BOD 2013 - Bioinformatics
Open Days 2013, Braga, 2013.
- A.L Amaral; D.P. Mesquita; C. Leal; M.Carvalheira ; A. Oehmen; M. A. Reis; E. C. Ferreira. "Intracelular Poly-P assessment
by DAPI staining and image analysis (poster communication)". Trabalho apresentado em Microbiotec 2013, Aveiro,
2013.
Publicado
- Dias, Oscar; Gombert, Andreas K.; Ferreira, Eugénio C.; Rocha, Isabel. "Towards a genome-scale metabolic model for the Kluyveromyces
lactis yeast.". Trabalho apresentado em 9th European Congress of Chemical Engineering / 2nd European Congress of Applied
Biotechnology, The Hague, 2013.
Publicado
- D. P. Mesquita; C. Leal; A. Oehmen; A. L. Amaral; M. A. Reis; E. C. Ferreira. "Polyphosphates and poly-ß-hydroxybutyrate granules
identification through quantitative image analysis in enhanced biological phosphorus removal systems (Poster communication)".
Braga, 2011.
Publicado
- Rocha, I.; Dias, Oscar; Rocha, Miguel; Ferreira, Eugénio C.. "Genome-scale metabolic models reconstruction of less characterized
organisms with Merlin". Trabalho apresentado em Metabolic Engineering VIII: Metabolic Engineering for Green Growth,
Jeju Island, 2010.
Publicado
- Dias, Oscar; Rocha, Miguel; Rocha, Isabel; Ferreira, Eugénio C.. "Metabolic reconstruction of less characterized microorganisms:
a new methodology for reaction identification from genome sequencing data.". Trabalho apresentado em JORNADAS DE BIOINFORMÁTICA,
Lisboa, 2009.
Publicado
- Carneiro, S.; Lourenço, Anália; Mendes, Rui; Rocha, Miguel; Ferreira, Eugénio C.; Rocha, I.. "Network analysis of an integrated
metabolic/regulatory model of Escherichia coli". Trabalho apresentado em FPBC’08 - Fórum Português de Biologia Computacional,
Oeiras, 2008.
Publicado
- Lourenço, Anália; Carreira, Rafael; Carneiro, Sónia; Maia, Paulo; Ferreira, Eugénio C.; Glez-Peña, D.; Fdez-Riverola, F.;
Rocha, Miguel; Rocha, I.. "The @Note biomedical text mining workbench". Trabalho apresentado em FPBC’08 - Forum Português
de Biologia Computacional, Oeiras, 2008.
Publicado
- S. Carneiro; P: Maia; M. Rocha; E. C. Ferreira; I. Rocha. "Constraint-based approach for in silico Escherichia coli combined
regulatory/metabolic modelling". Trabalho apresentado em Congresso Micro '07 - Biotec '07 - XXIII JPG, Lisboa,
2007.
Publicado
- J. C. Costa; I. Moita; A. A. Abreu; E. C. Ferreira; M. M. Alves. "Use of morphological and physiological information to identify
changes in anaerobic granular sludge during organic overloads". Trabalho apresentado em Congresso Micro '07 - Biotec '07
- XXIII JPG, Lisboa, 2007.
Publicado
- R. S. Costa; S. Carneiro; I. Rocha; E. C. Ferreira. "Effect of pH variation on the acetate “switch” and biomass growth in
an Escherichia coli aerobic fermentation: global gene expression profiles analysis". Trabalho apresentado em Congresso
Micro '07 - Biotec '07 - XXIII JPG, Lisboa, 2007.
Publicado
- A. Lourenço; A. Simões; J. J. Almeida; M. Rocha; I. Rocha; E. C. Ferreira. "Literature mining applied to systems biology information
retrieval". Trabalho apresentado em Congresso Micro '07 - Biotec '07 - XXIII JPG, Lisboa, 2007.
Publicado
- D. P. Mesquita; O. Dias; E. C. Ferreira; A. L. Amaral. "Monitoring activated sludge systems from wastewater treatment plants:
automated image analysis procedures and their relation with operating parameters". Trabalho apresentado em Congresso Micro
'07 - Biotec '07 - XXIII JPG, Lisboa, 2007.
Publicado
- A. Nicolau; S. Santos; C. Carvalho; E. C. Ferreira; J. Azeredo. "Pitfalls and successes in phage therapy: the involvement
of the UMinho Team in the European Project Phagevet-P". Trabalho apresentado em Congresso Micro '07 - Biotec '07 - XXIII
JPG, Lisboa, 2007.
Publicado
- Belo, Isabel; Ferreira, Eugénio C.; Pinheiro, Rita; Coutinho, J.A.P.; Coelho, M.A.Z.; Mota, Manuel. "Comparison of yeast
response to increased pressure at aerobic and anaerobic conditions". Trabalho apresentado em ECB11 - 11th European Congress
on Biotechnology, Basel, 2003.
Publicado
- Oliveira, José M.; Ferreira, Eugénio C.; Mota, Manuel. "Tanques de Percolação". Trabalho apresentado em Jornadas sobre
Tratamento de Efluentes Vinícolas, Braga, 1994.
Publicado
- P. Pimenta; S. Feyo de Azevedo; E. C. Ferreira; F. R. Oliveira. "Model-based identification and control on baker's yeast fed-batch
fermentation". Trabalho apresentado em 6th European Congress on Biotechnology, Firenze, 1993.
Publicado
|
Tese / Dissertação |
- Fonseca, André Paço da. "A digital image based method to quantify intracellular polyphosphates in microbial aggregates". Mestrado,
2018. http://hdl.handle.net/1822/66151.
- Mota, Elisiária Maria Dias da. "Segurança no trabalho: riscos ambientais". Mestrado, 2017. http://hdl.handle.net/1822/54741.
- Miragaia, Ricardo Júdice. "Immune tolerance dissected by single-cell transcriptomics". Doutoramento, 2017. http://hdl.handle.net/1822/48631.
- Oliveira, Daniel Filipe Braga de. "Plataforma online para caracterizar comunidades microbianas de estações de tratamento de
água e efluentes". Mestrado, 2017. http://hdl.handle.net/1822/57384.
- Souto, Maria Amélia Moreira. "Implementação do referencial BRC Food Safety versão 7 numa empresa transformadora de carne".
Mestrado, 2016. http://hdl.handle.net/1822/47435.
|