- Ward D; Higgins M; Phelan JE; Hibberd ML; Campino S; Clark TG. "An integrated in silico immuno-genetic analytical platform
provides insights into COVID-19 serological and vaccine targets.". Genome medicine (2021): http://europepmc.org/abstract/med/33413610.
10.1186/s13073-020-00822-6
- Perdigão J; Caneiras C; Elias R; Modesto A; Spadar A; Phelan J; Campino S; et al. "Genomic Epidemiology of Carbapenemase Producing
Klebsiella pneumoniae Strains at a Northern Portuguese Hospital Enables the Detection of a Misidentified Klebsiella
variicola KPC-3 Producing Strain.". Microorganisms (2020): http://europepmc.org/abstract/med/33322205.
10.3390/microorganisms8121986
- Napier G; Campino S; Merid Y; Abebe M; Woldeamanuel Y; Aseffa A; Hibberd ML; Phelan J; Clark TG. "Robust barcoding and identification
of Mycobacterium tuberculosis lineages for epidemiological and clinical studies.". Genome medicine (2020): http://europepmc.org/abstract/med/33317631.
10.1186/s13073-020-00817-3
- Libiseller-Egger J; Phelan J; Campino S; Mohareb F; Clark TG. "Robust detection of point mutations involved in multidrug-resistant
Mycobacterium tuberculosis in the presence of co-occurrent resistance markers.". PLoS computational biology (2020):
http://europepmc.org/abstract/med/33347430.
10.1371/journal.pcbi.1008518
- Turkiewicz A; Manko E; Sutherland CJ; Diez Benavente E; Campino S; Clark TG. "Genetic diversity of the Plasmodium falciparum
GTP-cyclohydrolase 1, dihydrofolate reductase and dihydropteroate synthetase genes reveals new insights into sulfadoxine-pyrimethamine
antimalarial drug resistance.". PLoS genetics (2020): http://europepmc.org/abstract/med/33382691.
10.1371/journal.pgen.1009268
- Campos M; Ward D; Morales RF; Gomes AR; Silva K; Sepúlveda N; Gomez LF; Clark TG; Campino S. "Surveillance of Aedes aegypti
populations in the city of Praia, Cape Verde: Zika virus infection, insecticide resistance and genetic diversity.". Parasites
& vectors (2020): http://europepmc.org/abstract/med/32958043.
10.1186/s13071-020-04356-z
- Katale BZ; Misinzo G; Mshana SE; Chiyangi H; Campino S; Clark TG; Good L; Rweyemamu MM; Matee MI. "Genetic diversity and risk
factors for the transmission of antimicrobial resistance across human, animals and environmental compartments in East Africa:
a review.". Antimicrobial resistance and infection control (2020): http://europepmc.org/abstract/med/32762743.
10.1186/s13756-020-00786-7
- Garimella KV; Iqbal Z; Krause MA; Campino S; Kekre M; Drury E; Kwiatkowski D; et al. "Detection of simple and complex de novo
mutations with multiple reference sequences.". Genome research (2020): http://europepmc.org/abstract/med/32817236.
10.1101/gr.255505.119
- Jallow MW; Cerami C; Clark TG; Prentice AM; Campino S. "Differences in the frequency of genetic variants associated with iron
imbalance among global populations.". PloS one (2020): http://europepmc.org/abstract/med/32609760.
10.1371/journal.pone.0235141
- Ibrahim A; Diez Benavente E; Nolder D; Proux S; Higgins M; Muwanguzi J; Gomez Gonzalez PJ; et al. "Selective whole genome
amplification of Plasmodium malariae DNA from clinical samples reveals insights into population structure.". Scientific
reports (2020): http://europepmc.org/abstract/med/32616738.
10.1038/s41598-020-67568-4
- Grignard L; Nolder D; Sepúlveda N; Berhane A; Mihreteab S; Kaaya R; Phelan J; et al. "A novel multiplex qPCR assay for detection
of Plasmodium falciparum with histidine-rich protein 2 and 3 (pfhrp2 and pfhrp3) deletions in polyclonal infections.". EBioMedicine
(2020): http://europepmc.org/abstract/med/32403083.
10.1016/j.ebiom.2020.102757
- Susana Campino. "Whole-genome sequencing resolves a polyclonal outbreak by extended-spectrum beta-lactam and carbapenem-resistant
Klebsiella pneumoniae in a Portuguese tertiary-care hospital.". Microbial genomics (2020):
10.1099/mgen.0.000349
- Susana Campino. "Whole genome sequencing of Mycobacterium tuberculosis isolates and clinical outcomes of patients treated
for multidrug-resistant tuberculosis in Tanzania.". BMC genomics 21 1 (2020): 174-174.
10.1186/s12864-020-6577-1
- Susana Campino. "A molecular barcode to inform the geographical origin and transmission dynamics of Plasmodium vivax malaria.".
PLoS genetics 16 2 (2020): e1008576-e1008576.
10.1371/journal.pgen.1008576
- Susana Campino. "Using genomics to understand the origin and dispersion of multidrug and extensively drug resistant tuberculosis
in Portugal.". Scientific reports 10 1 (2020): 2600-2600.
10.1038/s41598-020-59558-3
- Susana Campino. "Whole genome sequencing of amplified Plasmodium knowlesi DNA from unprocessed blood reveals genetic exchange
events between Malaysian Peninsular and Borneo subpopulations". Scientific Reports 9 1 (2019): 9873-9873. http://www.ncbi.nlm.nih.gov/pubmed/31285495 http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=PMC6614422
http://www.nature.com/articles/s41598-019-46398-z.
10.1038/s41598-019-46398-z
- Susana Campino. "A comprehensive analysis of drug resistance molecular markers and Plasmodium falciparum genetic diversity
in two malaria endemic sites in Mali.". Malaria journal 18 1 (2019): 361-361.
10.1186/s12936-019-2986-5
- Susana Campino. "Whole genome sequencing of drug resistant Mycobacterium tuberculosis isolates from a high burden tuberculosis
region of North West Pakistan.". Scientific reports 9 1 (2019): 14996-14996.
10.1038/s41598-019-51562-6
- Franziska Mohring; Melissa Natalie Hart; Thomas A Rawlinson; Ryan Henrici; James A Charleston; Ernest Diez Benavente; Avnish
Patel; et al. "Rapid and iterative genome editing in the malaria parasite Plasmodium knowlesi provides new tools for P. vivax
research". eLife 8 (2019): https://doi.org/10.7554%2Felife.45829.
10.7554/elife.45829
- Susana Campino. "Rapid and iterative genome editing in the malaria parasite Plasmodium knowlesi provides new tools for P.
vivax research.". eLife 8 (2019):
10.7554/eLife.45829
- Susana Campino. "Mycobacterium tuberculosis whole genome sequencing provides insights into the Manila strain and drug-resistance
mutations in the Philippines.". Scientific reports 9 1 (2019): 9305-9305.
10.1038/s41598-019-45566-5
- Susana Campino. "Integrating informatics tools and portable sequencing technology for rapid detection of resistance to anti-tuberculous
drugs.". Genome medicine 11 1 (2019): 41-41.
10.1186/s13073-019-0650-x
- Susana Campino. "An analysis of large structural variation in global Plasmodium falciparum isolates identifies a novel duplication
of the chloroquine resistance associated gene.". Scientific reports 9 1 (2019): 8287-8287.
10.1038/s41598-019-44599-0
- Momodou W. Jallow; Susana Campino; Andrew M. Prentice; Carla Cerami. "A recall-by-genotype study on polymorphisms in the TMPRSS6
gene and oral iron absorption: a study protocol". F1000Research 8 (2019): 701-701. https://doi.org/10.12688%2Ff1000research.19080.1.
10.12688/f1000research.19080.1
- Susana Campino. "Association of Malaria Infection During Pregnancy With Head Circumference of Newborns in the Brazilian Amazon.".
JAMA network open 2 5 (2019): e193300-e193300.
10.1001/jamanetworkopen.2019.3300
- Susana Campino. "SV-Pop: population-based structural variant analysis and visualization.". BMC bioinformatics 20 1
(2019): 136-136.
10.1186/s12859-019-2718-4
- Susana Campino. "An integrated whole genome analysis of Mycobacterium tuberculosis reveals insights into relationship between
its genome, transcriptome and methylome.". Scientific reports 9 1 (2019): 5204-5204.
10.1038/s41598-019-41692-2
- Susana Campino. "PrimedRPA: primer design for recombinase polymerase amplification assays". Bioinformatics 35 4 (2019):
682-684. http://www.ncbi.nlm.nih.gov/pubmed/30101342
http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=PMC6379019 https://academic.oup.com/bioinformatics/article/35/4/682/5068159.
10.1093/bioinformatics/bty701
- Susana Campino. "Bead-based assays to simultaneously detect multiple human inherited blood disorders associated with malaria.".
Malaria journal 18 1 (2019): 14-14.
10.1186/s12936-019-2648-7
- Susana Campino. "Machine Learning Predicts Accurately Mycobacterium tuberculosis Drug Resistance From Whole Genome Sequencing
Data.". Frontiers in genetics 10 (2019): 922-922.
10.3389/fgene.2019.00922
- Susana Campino. "Artemisinin resistance-associated markers in Plasmodium falciparum parasites from the China-Myanmar border:
predicted structural stability of K13 propeller variants detected in a low-prevalence area.". PloS one 14 3 (2019):
e0213686-e0213686.
10.1371/journal.pone.0213686
- Susana Campino. "A forward genetic screen reveals a primary role for Plasmodium falciparum Reticulocyte Binding Protein Homologue
2a and 2b in determining alternative erythrocyte invasion pathways.". PLoS pathogens 14 11 (2018): e1007436-e1007436.
10.1371/journal.ppat.1007436
- Susana Campino. "Global genetic diversity of var2csa in Plasmodium falciparum with implications for malaria in pregnancy and
vaccine development.". Scientific reports 8 1 (2018): 15429-15429.
10.1038/s41598-018-33767-3
- Susana Campino. "Zika might not be acting alone: Using an ecological study approach to investigate potential co-acting risk
factors for an unusual pattern of microcephaly in Brazil". PLOS ONE 13 8 (2018): e0201452-e0201452. http://www.ncbi.nlm.nih.gov/pubmed/30110370 http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=PMC6093667
http://dx.plos.org/10.1371/journal.pone.0201452.
10.1371/journal.pone.0201452
- Susana Campino. "Long read assemblies of geographically dispersed Plasmodium falciparum isolates reveal highly structured
subtelomeres". Wellcome Open Research 3 (2018): 52-52. https://wellcomeopenresearch.org/articles/3-52/v1.
10.12688/wellcomeopenres.14571.1
- Susana Campino. "A reference genome and methylome for the Plasmodium knowlesi A1-H.1 line". International Journal for Parasitology
48 3-4 (2018): 191-196. http://www.ncbi.nlm.nih.gov/pubmed/29258833 http://linkinghub.elsevier.com/retrieve/pii/S0020751917303466.
10.1016/j.ijpara.2017.09.008
- Susana Campino. "Analysis of nuclear and organellar genomes of Plasmodium knowlesi in humans reveals ancient population structure
and recent recombination among host-specific subpopulations.". PLoS genetics 13 9 (2017): e1007008-e1007008. http://wwwnc.cdc.gov/eid/article/23/4/16-1738{\_}article.htm http://www.ncbi.nlm.nih.gov/pubmed/28922357
http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=PMC5619863.
10.1371/journal.pgen.1007008
- Susana Campino. "Genomic variation in Plasmodium vivax malaria reveals regions under selective pressure". PLoS ONE
12 5 (2017):
10.1371/journal.pone.0177134
- Susana Campino. "Characterisation of the opposing effects of G6PD deficiency on cerebral malaria and severe malarial anaemia".
eLife 6 (2017): http://www.ncbi.nlm.nih.gov/pubmed/28067620
http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=PMC5222559 http://elifesciences.org/lookup/doi/10.7554/eLife.15085.
10.7554/eLife.15085
- Susana Campino. "Genetic diversity of next generation antimalarial targets: A baseline for drug resistance surveillance programmes".
International Journal for Parasitology: Drugs and Drug Resistance 7 2 (2017): 174-180. http://www.sciencedirect.com/science/article/pii/S2211320717300131.
10.1016/j.ijpddr.2017.03.001
- Susana Campino. "Mycobacterium tuberculosis whole genome sequencing and protein structure modelling provides insights into
anti-tuberculosis drug resistance". BMC Medicine 14 1 (2016): 31-31. http://www.biomedcentral.com/1741-7015/14/31.
10.1186/s12916-016-0575-9
- Susana Campino. "Recombination in pe/ppe genes contributes to genetic variation in Mycobacterium tuberculosis lineages". BMC
Genomics 17 1 (2016): 151-151. http://www.ncbi.nlm.nih.gov/pubmed/26923687
http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=PMC4770551 http://www.biomedcentral.com/1471-2164/17/151.
10.1186/s12864-016-2467-y
- Susana Campino. "Genomic variation in two gametocyte non-producing Plasmodium falciparum clonal lines". Malaria Journal
15 1 (2016): 229-229. http://www.ncbi.nlm.nih.gov/pubmed/27098483
http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=PMC4839107 http://malariajournal.biomedcentral.com/articles/10.1186/s12936-016-1254-1.
10.1186/s12936-016-1254-1
- Susana Campino. "Characterizing the impact of sustained sulfadoxine/pyrimethamine use upon the Plasmodium falciparum population
in Malawi.". Malaria journal 15 1 (2016): 575-575. http://www.ncbi.nlm.nih.gov/pubmed/27899115
http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=PMC5129638 http://malariajournal.biomedcentral.com/articles/10.1186/s12936-016-1634-6.
10.1186/s12936-016-1634-6
- Susana Campino. "Indels, structural variation, and recombination drive genomic diversity in Plasmodium falciparum.". Genome
research 26 9 (2016): 1288-99. http://genome.cshlp.org/lookup/doi/10.1101/gr.203711.115
http://www.ncbi.nlm.nih.gov/pubmed/27531718 http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=PMC5052046.
10.1101/gr.203711.115
- Susana Campino. "Genomic analysis of local variation and recent evolution in Plasmodium vivax.". Nature genetics 48
8 (2016): 959-964. http://www.ncbi.nlm.nih.gov/pubmed/27348299 http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=PMC4966634.
10.1038/ng.3599
- Susana Campino. "Genetic architecture of artemisinin-resistant Plasmodium falciparum.". Nature genetics 47 3 (2015):
226-34. http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=4545236{\&}tool=pmcentrez{\&}rendertype=abstract.
10.1038/ng.3189
- Susana Campino. "Whole-genome scans provide evidence of adaptive evolution in Malawian Plasmodium falciparum isolates.". The
Journal of infectious diseases 210 12 (2014): 1991-2000. http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=4241944{\&}tool=pmcentrez{\&}rendertype=abstract
http://www.ncbi.nlm.nih.gov/pubmed/24948693 http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=PMC4241944.
10.1093/infdis/jiu349
- Susana Campino. "Glucose-6-phosphate dehydrogenase polymorphisms and susceptibility to mild malaria in Dogon and Fulani, Mali".
Malaria Journal 13 1 (2014): 270-270. http://www.ncbi.nlm.nih.gov/pubmed/25015414
http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=PMC4110528 http://malariajournal.biomedcentral.com/articles/10.1186/1475-2875-13-270.
10.1186/1475-2875-13-270
- Susana Campino. "estMOI: estimating multiplicity of infection using parasite deep sequencing data". Bioinformatics
30 9 (2014): 1292-1294. http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=3998131{\&}tool=pmcentrez{\&}rendertype=abstract
https://academic.oup.com/bioinformatics/article-lookup/doi/10.1093/bioinformatics/btu005.
10.1093/bioinformatics/btu005
- Susana Campino. "A barcode of organellar genome polymorphisms identifies the geographic origin of Plasmodium falciparum strains".
Nature Communications 5 May (2014): 1-7. http://www.nature.com/doifinder/10.1038/ncomms5052.
10.1038/ncomms5052
- Susana Campino. "Multiple populations of artemisinin-resistant Plasmodium falciparum in Cambodia.". Nature genetics
45 6 (2013): 648-55. http://www.ncbi.nlm.nih.gov/pubmed/23624527 http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=PMC3807790.
10.1038/ng.2624
- Susana Campino. "Genome-wide screen identifies new candidate genes associated with artemisinin susceptibility in Plasmodium
falciparum in Kenya.". Scientific reports 3 (2013): 3318-3318. http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=3839035{\&}tool=pmcentrez{\&}rendertype=abstract.
10.1038/srep03318
- Susana Campino. "VarB: a variation browsing and analysis tool for variants derived from next-generation sequencing data.".
Bioinformatics (Oxford, England) 28 22 (2012): 2983-5. http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=3496337{\&}tool=pmcentrez{\&}rendertype=abstract.
10.1093/bioinformatics/bts557
- Susana Campino. "Population genomic scan for candidate signatures of balancing selection to guide antigen characterization
in malaria parasites.". PLoS genetics 8 11 (2012): e1002992-e1002992. http://dx.plos.org/10.1371/journal.pgen.1002992 http://www.ncbi.nlm.nih.gov/pubmed/23133397 http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=PMC3486833.
10.1371/journal.pgen.1002992
- Susana Campino. "Analysis of Plasmodium falciparum diversity in natural infections by deep sequencing". Nature 487
7407 (2012): 375-379. http://www.nature.com/articles/nature11174 http://www.ncbi.nlm.nih.gov/pubmed/22722859
http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=PMC3738909.
10.1038/nature11174
- Susana Campino. "An Effective Method to Purify Plasmodium falciparum DNA Directly from Clinical Blood Samples for Whole Genome
High-Throughput Sequencing". PLoS ONE 6 7 (2011): e22213-e22213. http://www.ncbi.nlm.nih.gov/pubmed/21789235 http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=PMC3138765
http://dx.plos.org/10.1371/journal.pone.0022213.
10.1371/journal.pone.0022213
- Susana Campino. "Allelic heterogeneity of G6PD deficiency in West Africa and severe malaria susceptibility". European Journal
of Human Genetics 17 8 (2009): 1080-1085. http://www.ncbi.nlm.nih.gov/pubmed/19223928
http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=PMC2986558 http://www.nature.com/doifinder/10.1038/ejhg.2009.8.
10.1038/ejhg.2009.8
- Susana Campino. "Genome-wide and fine-resolution association analysis of malaria in West Africa.". Nature genetics
41 6 (2009): 657-665.
10.1038/ng.388
- Susana Campino. "Prevention of diabetes in nonobese diabetic mice mediated by CD1d-restricted nonclassical NKT cells.". Journal
of immunology (Baltimore, Md. : 1950) 173 5 (2004): 3112-3118.
10.4049/jimmunol.173.5.3112