Célia Maria Romba Rodrigues Miguel (8511-DB9A-9502)

Curriculum Vitae

Célia Maria Romba Rodrigues Miguel

Célia Maria Miguel (CM) has a PhD in Plant Biotechnology in 1999, from the University of Lisbon. From 2000 to 2006 she was Post-doc researcher at iBET, Assistant Researcher (2006-2013), Principal Investigator (2014-2016), and head of lab at iBET and ITQB NOVA (2008-2016). She then moved to the University of Lisbon (Faculty of Sciences) where she teaches in the Plant Biology Department as an associate professor (Bachelor, Master and PhD courses) since 2024 (assistant professor 2016-2024) and is the leader of the Forest Genomics and Molecular Genetics (ForGen, https://forgen.rd.ciencias.ulisboa.pt) lab integrating Post-doc researchers, PhD and Master students, part of the BioSystems and Integrative Sciences Institute (BioISI R&D unit). Her research interests are mainly focused on the genomics and molecular genetics of industrially relevant forest tree traits. Past and current research programs have addressed the molecular regulation of developmental processes such as conifer embryogenesis, cork and wood formation, and tree responses to environmental stresses (e.g.drought stress and pinewood nematode response in maritime pine) using genomics and reverse genetics approaches. She has also been involved in national and international tree genome sequencing initiatives, either as a co-promoter (cork oak) or participant (maritime pine), and in the generation of tools and pipelines for data analysis (e.g.Cork Oak Genome Portal). She has had several roles in ELIXIR, the European infrastructure for biological data, including co-leader of the ELIXIR plant community (2015-2022) and leader of the ELIXIR-PT (BioData) Plants working group (2015-2022), which resulted, among other outputs, in the release of the Minimal Information About a Plant Phenotyping Experiment (MIAPPE 1.1). She served as member of the ELIXIR Belgium Advisory Board (2019-2023), and has been part of the Tree Biology and Biotechnology working group of the European Plant Science Organization (EPSO) since 2016. CM has contributed 69 ISI articles (in Plant Journal, New Phytologist, Journal of Exp Botany, EMBO Journal, etc) among other publications including conference proceedings, book chapters or edited books, with a total of 1749 citations in Scopus (January 2024, h-index 21). CM has been the coordinator of 8 national projects and acted as Portuguese coordinator of 4 EC funded project (H2020, FP7-PEOPLE, EU FP7 and P-KBBE programs), in addition to participation as local PI, co-PI or team member in over 20 national projects. She has also been Grant reviewer for several science foundations including FCT, German DFG, Dutch NOW and National Science Centre (Poland), and external evaluator of European PhD degree awards. Over the years, she has been invited to the scientific/organization committees of international and national conferences (International Symposium PADIBA 2017, 4th and 5th International Conference of the IUFRO Unit 2.09.02 - 2018 and 2016, 8th Plant Genomics European Meeting 2009, Applied Bioinformatics in Life Sciences 2022, etc). CM has coordinated several post-graduation and university extension courses, has been member of the directive board of the International PhD Program Plants for Life, (co)supervised several PhD students (8 awarded degrees) and is currently the (co)supervisor of another 4 PhD and several MSc students working in the ForGen lab.

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Identificação

Identificação pessoal

Nome completo: Célia Maria Romba Rodrigues Miguel

Nomes de citação

Miguel, Célia
Miguel, Célia M.

Identificadores de autor

Ciência ID: 8511-DB9A-9502
ORCID iD: 0000-0002-1427-952X
Google Scholar ID: https://scholar.google.com/citations?hl=pt-PT&user=bp6yH18AAAAJ
Researcher Id: D-2153-2012
Scopus Author Id: 7003739340

Websites

http://forgen.rd.ciencias.ulisboa.pt (Académico)
https://ciencias.ulisboa.pt/pt/perfil/cmmiguel (Profissional)

Domínios de atuação

Ciências Naturais - Ciências Biológicas - Fitologia
Ciências Agrárias - Agricultura, Silvicultura e Pescas - Produção e Proteção de Plantas
Ciências Naturais - Ciências Biológicas - Biologia do Desenvolvimento

Formação

	Grau	Classificação
2024/07/05 Concluído	Biologia, especialidade Fisiologia e Biologia do Desenvolvimento (Título de Agregado) Universidade de Lisboa Faculdade de Ciências, Portugal
1999 Concluído	Biologia (Doutoramento) Especialização em Especialidade: Biotecnologia Vegetal Universidade de Lisboa, Portugal "Adventitious Regeneration and Genetic Transformation of Almond (prunus Dulcis Mill.)" (TESE/DISSERTAÇÃO)	Approved with Distinção e Louvor by unanimity
1991 Concluído	Biologia (Licenciatura) Universidade de Lisboa Faculdade de Ciências, Portugal	16,4

Percurso profissional

Ciência

	Categoria Profissional Instituição de acolhimento	Empregador
2016/01/01 - Atual	Investigador principal (carreira) (Investigação)	Universidade de Lisboa Faculdade de Ciências, Portugal
	Universidade de Lisboa Instituto de Biossistemas e Ciências Integrativas, Portugal
2014 - 2016	Investigador principal (carreira) (Investigação)	Instituto de Biologia Experimental e Tecnológica, Portugal
	Instituto de Biologia Experimental e Tecnológica, Portugal (...)
2006 - 2013	Investigador Auxiliar (carreira) (Investigação)	Instituto de Biologia Experimental e Tecnológica, Portugal
	Instituto de Biologia Experimental e Tecnológica, Portugal (...)
1999 - 2005	Pós-doutorado (Investigação)	Fundação para a Ciência e a Tecnologia, Portugal
	Instituto de Biologia Experimental e Tecnológica, Portugal

Docência no Ensino Superior

	Categoria Profissional Instituição de acolhimento	Empregador
2024/02 - Atual	Professor Associado (Docente Universitário)	Universidade de Lisboa Faculdade de Ciências, Portugal

2016/09/01 - 2024/01	Professor Auxiliar (Docente Universitário)	Universidade de Lisboa, Portugal
	Universidade de Lisboa Faculdade de Ciências, Portugal

Projetos

Bolsa

	Designação	Financiadores
2014/02/01 - 2016/08/31	Molecular regulation of developmental processes in trees IF/01168/2013/CP1176/CT0001 Investigador responsável Instituto de Biologia Experimental e Tecnológica, Portugal	Fundação para a Ciência e a Tecnologia Concluído
2004 - 2006	Post-Doc fellowship SFRH/BPD/17902/2004 Bolseiro de Pós-Doutoramento	Fundação para a Ciência e a Tecnologia
2001/10/01 - 2004/09/30	Estudos Moleculares e fisiológicos em culturas embriogénicas de pinheiro bravo - Post-doc Fellowship SFRH/BPD/5645/2001 Investigador Pós-doutorado	Fundação para a Ciência e a Tecnologia Concluído
1994 - 1997	PhD Fellowship BD/2666/93 Bolseiro de Doutoramento	Fundação para a Ciência e a Tecnologia Concluído

Projeto

	Designação	Financiadores
2021/09/21 - 2025/12/31	RN21 Projeto Integrado Resina Natural 21 01/C12-i01/2021 Investigador Laboratório Colaborativo para Gestão Integrada da Floresta e do Fogo, Portugal Fundação da Faculdade de Ciências da Universidade de Lisboa, Portugal	Governo da República Portuguesa Ministério da Ciência Tecnologia e Ensino Superior Em curso
2021/07/01 - 2025/06/30	Unveiling the role of DNA methylation in periderm and lenticel formation PTDC/ASP-SIL/1717/2020 10.54499/PTDC/ASP-SIL/1717/2020 Co-Investigador Responsável (Co-IR) FCiênciasID Associação para a Investigação e Desenvolvimento de Ciências, Portugal Universidade de Lisboa Instituto de Biossistemas e Ciências Integrativas, Portugal Universidade NOVA de Lisboa, Portugal Universidade de Lisboa Instituto Superior de Agronomia, Portugal Universidade de Lisboa Centro de Estudos Florestais, Portugal Universidade de Lisboa Faculdade de Ciências, Portugal Universidade de Lisboa Centro de Investigação em Agronomia Alimentos Ambiente e Paisagem, Portugal BioResources 4 Sustainability, Portugal	Fundação para a Ciência e a Tecnologia Em curso
2020/07/01 - 2024/06/30	Pinheiro-bravo (Pinus pinaster Ait.): conservação e melhoramento dos recursos genéticos PDR2020-785-063762 Investigador FCiênciasID Associação para a Investigação e Desenvolvimento de Ciências, Portugal Instituto Nacional de Investigação Agrária e Veterinária, Portugal Universidade de Lisboa Instituto Superior de Agronomia, Portugal Instituto da Conservação da Natureza e das Florestas IP, Portugal	Fundação para a Ciência e a Tecnologia Governo da República Portuguesa Ministério da Ciência Tecnologia e Ensino Superior Em curso
2018/10/12 - 2022/09/30	SuberInStress - Cork formation and suberin deposition: the role of water and heat stress PTDC/BIA-FBT/29704/2017 Investigador Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica António Xavier, Portugal Instituto Nacional de Investigação Agrária e Veterinária, Portugal	Fundação para a Ciência e a Tecnologia Concluído
2018/07/01 - 2022/06/30	PINASTER-PWN Development of molecular markers for resistance to pine wilt disease in Pinus pinaster PTDC/BAA-MOL/28379/2017 Investigador responsável FCiênciasID Associação para a Investigação e Desenvolvimento de Ciências, Portugal Universidade de Lisboa Faculdade de Ciências, Portugal Universidade de Lisboa Instituto de Biossistemas e Ciências Integrativas, Portugal Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica António Xavier, Portugal Instituto Nacional de Investigação Agrária e Veterinária, Portugal	Fundação para a Ciência e a Tecnologia Concluído
2018/07/01 - 2022/06/30	PATHOmics Pathogenomics of coffee leaf rust to probe virulence mechanisms and diagnostic markers PTDC/ASP-PLA/29189/2017 Investigador FCiênciasID Associação para a Investigação e Desenvolvimento de Ciências, Portugal	Fundação para a Ciência e a Tecnologia Concluído
2017/06/16 - 2021/06/17	Biodata.pt – Infraestrutura Portuguesa de Dados Biológicos 22231 PI at Partner Institution Instituto de Biologia Experimental e Tecnológica, Portugal Instituto Gulbenkian de Ciência, Portugal Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica António Xavier, Portugal Universidade do Algarve, Portugal Fundação Champalimaud, Portugal Centro de Biotecnologia Agrícola e Agro-Alimentar do Alentejo, Portugal Universidade de Lisboa Instituto Superior Técnico, Portugal Universidade do Minho, Portugal	Fundação para a Ciência e a Tecnologia Concluído
2019/01/01 - 2019/12/31	Biosystems & Integrative Sciences Institute UID/Multi/04046/2019 FCiênciasID Associação para a Investigação e Desenvolvimento de Ciências, Portugal Universidade de Lisboa Instituto de Biossistemas e Ciências Integrativas, Portugal Instituto Nacional de Saúde Doutor Ricardo Jorge, Portugal Universidade do Minho, Portugal Universidade de Lisboa Faculdade de Ciências, Portugal Fundação da Faculdade de Ciências da Universidade de Lisboa, Portugal Universidade do Porto Faculdade de Ciências, Portugal	Fundação para a Ciência e a Tecnologia Concluído
2019/01/01 - 2019/12/31	Bioresources 4 Sustainability UID/Multi/04551/2019 Universidade NOVA de Lisboa, Portugal BioResources 4 Sustainability, Portugal Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica António Xavier, Portugal Fundação Calouste Gulbenkian, Portugal Instituto de Biologia Experimental e Tecnológica, Portugal	Fundação para a Ciência e a Tecnologia Concluído
2015/08/01 - 2019/07/31	ELIXIR-EXCELERATE Fast-track ELIXIR implementation and drive early user exploitation across the life-sciences 676559 PI at Partner Institution Instituto de Biologia Experimental e Tecnológica, Portugal Instituto Gulbenkian de Ciência, Portugal Instituto de Engenharia de Sistemas e Computadores Investigação e Desenvolvimento em Lisboa, Portugal European Bioinformatics Institute, Reino Unido	European Commission Concluído
2015/10 - 2017/10	PineWS-miRNA-vs-Gene 627761 Investigador responsável Instituto de Biologia Experimental e Tecnológica, Portugal	European Commission Concluído
2013/07 - 2016/06	Large-Scale Data Management in Cloud Environments Provided by PTCRIS: 127044 PI at Partner Institution Instituto de Biologia Experimental e Tecnológica, Portugal Instituto de Engenharia de Sistemas e Computadores Investigação e Desenvolvimento em Lisboa, Portugal	Fundação para a Ciência e a Tecnologia Concluído
2012/03 - 2016/01	Population genomics of virulence adaptation in coffee leaf rust (Hemileia vastatrix) Provided by PTCRIS: 119943 PI at partner Institution Instituto de Biologia Experimental e Tecnológica, Portugal FCiênciasID Associação para a Investigação e Desenvolvimento de Ciências, Portugal	Fundação para a Ciência e a Tecnologia Concluído
2012 - 2016	GENOSUBER – cork oak genome sequencing project ALENT-07-0224-FEDER-001754 Investigador	Concluído
2012 - 2015	ProCoGen Promoting a functional and comparative understanding of the conifer genome- implementing applied aspects for more productive and adapted forests 289841 PI at the Partner Institution Instituto de Biologia Experimental e Tecnológica, Portugal	European Commission Concluído
2010/04 - 2013/09	Gene Regulatory Networks Underlying Phellogen Activity Provided by PTCRIS: 98369 PTDC/AGR-GPL/098369/2008 Investigador responsável	Fundação para a Ciência e a Tecnologia Concluído
2010/04 - 2013/09	Assessment of genetic and genomic resources of Cork Oak: the basis towards a prospective management Provided by PTCRIS: 104966 Investigador	Fundação para a Ciência e a Tecnologia Concluído
2010/02 - 2013/07	Transcriptomics of maritime pine embryogenesis Provided by PTCRIS: 102877 Investigador responsável Instituto de Biologia Experimental e Tecnológica, Portugal	Fundação para a Ciência e a Tecnologia Concluído
2010/04 - 2013/06	Genomic tools in maritime PINE for enhanced biomass production and SUSTAINable forest management (SUSTAINPINE) Provided by PTCRIS: 111409 P-KBBE/AGR-GPL/0001/2009 Investigador responsável	Fundação para a Ciência e a Tecnologia Concluído
2010 - 2013	Identification of genes responsible for drought tolerance in Jatropha curcas, an emerging biodiesel plant PTDC/AGR-GPL/101435/2008 Consultant	Fundação para a Ciência e a Tecnologia Concluído
2009/11 - 2010/12	Cork oak ESTs Consortium - fruit and embryo development Provided by PTCRIS: 109248 Investigador responsável Instituto de Biologia Experimental e Tecnológica, Portugal Universidade do Algarve, Portugal Instituto Nacional de Investigação Agrária, Portugal	Fundação para a Ciência e a Tecnologia Concluído
2005/01 - 2008/03	Molecular and functional characterization of genes involved in maritime pine embryogenesis Provided by PTCRIS: 82181 POCI/AGR/57902/2004 PPCDT/AGR/57902/2004 Investigador responsável	Fundação para a Ciência e a Tecnologia Concluído
2005/05 - 2007/12	Functional Characterization of Genes Related to Nitrogen Metabolism in Genetically Modified Maritime Pine Provided by PTCRIS: 57157 Investigador	Fundação para a Ciência e a Tecnologia Concluído
2004/10/01 - 2006/09/30	A RETROTRANSPOSON-BASED STRATEGY TO IDENTIFY DIFFERENCES BETWEEN ZYGOTIC AND SOMATIC EMBRYOGENESIS IN MARITIME PINE SFRH/BPD/17902/2004	Fundação para a Ciência e a Tecnologia Concluído
2003/04 - 2006/03	Monitoring retrotransposon activity during in vitro propagation of maritime pine Provided by PTCRIS: 46283 POCTI/AGR/46283/2002 Investigador responsável	Fundação para a Ciência e a Tecnologia Concluído
2000/02 - 2004/01	Propagation of european pines via somatic embryogenesis QLK5-CT-1999-00679 Investigador	European Commission Concluído

Produções

Publicações

Artigo em conferência	Demirci, H.; Dias, Oscar; Chaves, Inês; Miguel, Célia; Rocha, Miguel; Rocha, I.. "The metabolic model of the Quercus suber (cork oak tree) leaf". 2019. Inês S. Modesto; Sterck, Lieven; Isabel Carrasquinho; Van de Peer, Yves; Miguel, Célia. "Identification of genes involved in the resistance response of Pinus pinaster to the Pinewood Nematode Infection". Trabalho apresentado em 6th International Workshop on the Genetics of Tree-Parasite Interactions: Tree Resistance to Insects and Diseases: Putting Promise into Practice, Mt. Sterling, 2018. Publicado Ana Alves; Andreia Sofia Rodrigues; Susana Lopes; Pedro Perdiguero; Bruno Vasques Costa; Confraria, Ana; Miguel, Célia. "Transcriptional identification and characterization of differentially expressed miRNAs involved in conifer embryogenesis". Trabalho apresentado em 5th International Conference of the IUFRO Unit 2.09.02 on “Clonal Trees in the Bioeconomy Age: Opportunities and Challenges, Coimbra, 2018. Publicado Andreia Sofia Santos; Jose de Vega Bartol; Miguel, Célia. "The transcriptome of maritime pine across embryo development". Trabalho apresentado em 5th International Conference of the IUFRO Unit 2.09.02 on “Clonal Trees in the Bioeconomy Age: Opportunities and Challenges, Coimbra, 2018. Publicado Andreia Sofia Rodrigues; Chaves, Inês; Costa, Bruno Vasques; Lin Y-C; Susana Lopes; Sandra Correia; Van de Peer, Yves; Bohn, Andreas; Miguel, Célia. "Identification of regulatory miRNA-target nodes across embryo development in Pinus pinaster". Trabalho apresentado em 4th International Conference of the IUFRO Unit 2.09.02 on “Development and application of vegetative propagation technologies in plantation forestry to cope with a changing climate and environment, La Plata, 2017. Publicado Trontin, Jean-Francois; Ávila, Concepción; Debille S; Teyssier, Caroline; Miguel, Célia; Lelu-Walter, M.-A.. "Somatic embryogenesis as an enabling technology for reverse genetics: achievements and prospects for breeding maritime pine (Pinus pinaster Ait.).". Trabalho apresentado em 4th International Conference of the IUFRO Unit 2.09.02 on “Development and application of vegetative propagation technologies in plantation forestry to cope with a changing climate and environment, La Plata, 2017. Publicado Andreia Sofia Rodrigues; Jose de Vega Bartol; Chaves, Inês; Marta Simões; Lorenz WW; Dean JFD; Bohn, Andreas; Miguel, Célia. "Regulators of gene expression in pine embryogenesis". Trabalho apresentado em Woody Plant Production Integrating Genetic and Vegetative Propagation Technologies, Vitoria-Gastiez, 2015. Publicado Chaves, Inês; Barros, Danielle R; Tenente, Rita; Rodrigues, Andreia; Silva, Maria do Céu; Ricardo, Cândico P; Miguel, Célia; Guerra-Guimarães, Leonor. "Identification of miRNAs as mediators of Coffea arabica resistance to Hemileia vastatrix". Trabalho apresentado em Proceedings of the 25rd International Conference on Coffee Science (ASIC), Arménia, 2014. Publicado Trontin, Jean-Francois; Debille S; Canlet F; Harvengt, Luc; Lelu-Walter, M.-A.; Label, Philippe; Teyssier, Caroline; Miguel, Célia; Canovas, Francisco M.. "Somatic embryogenesis as an effective regeneration support for reverse genetics in maritime pine: the Sustainpine collaborative project as a case study". Trabalho apresentado em Integrating vegetative propagation, biotechnologies and genetic improvement for tree production and sustainable forest management, Brno, 2013. Publicado Costa, Joana; Miguel, Célia; Almeida, Helena; Oliveira, Margarida M; Matos, José A; Simões, Fernanda; Veloso, Manuela; et al. "Genetic divergence in Cork Oak based on cpDNA sequence data". 2011. 10.1186/1753-6561-5-s7-p13 Sandra Correia; Miguel, Célia; Paula Veríssimo; Vinhas R; Lopes ML; Oliveira, M. Margarida; Canhoto, Jorge. "Proteomic and Genetic Transformation Studies of Somatic Embryogenesis in the Solanaceous Tree Cyphomandra betacea". Trabalho apresentado em Somatic Embryogenesis of Trees” conference on “Advances in Somatic Embryogenesis of Trees and Its Application for the Future Forests and Plantations, Suwon, 2010. Publicado
Artigo em revista	Lopes, Susana T.; Costa, Bruno; Chaves, Inês; Costa, Augusta; Miguel, Célia M.. "Uncovering miRNA-Mediated Regulation in Phellem Versus Xylem Differentiation in Quercus suber L.". Journal of Plant Growth Regulation (2024): http://dx.doi.org/10.1007/s00344-024-11453-1. Publicado • 10.1007/s00344-024-11453-1 Florez-Rueda, Ana Marcela; Miguel, Célia M.; Figueiredo, Duarte D.. "Comparative transcriptomics of seed nourishing tissues: uncovering conserved and divergent pathways in seed plants". The Plant Journal 119 2 (2024): 1134-1157. http://dx.doi.org/10.1111/tpj.16786. Publicado • 10.1111/tpj.16786 Ana Usié Chimenos; Octávio Serra; PM Barros; Pedro Barbosa; Célia Leão; Tiago Capote; Tânia Almeida; et al. "An improved reference genome and first organelle genomes of Quercus suber". Tree Genetics & Genomes (2023): http://dx.doi.org/10.1007/s11295-023-01624-8. 10.1007/s11295-023-01624-8 Filipe Sousa; Mariana Bray Viegas; Joana Costa; Isabel Marques; Francisco Pina-Martins; Fernanda Simões; José Matos; et al. "Haplotype diversity patterns in Quercus suber (Fagaceae) inferred from cpDNA sequence data". Plant Systematics and Evolution (2023): http://dx.doi.org/10.1007/s00606-023-01879-7. 10.1007/s00606-023-01879-7 Modesto, Inês; Mendes, André; Carrasquinho, Isabel; Miguel, Célia. Autor correspondente: Miguel, Célia. "Molecular Defense Response of Pine Trees (Pinus spp.) to the Parasitic Nematode Bursaphelenchus xylophilus". Cells 11 20 (2022): 3208. http://dx.doi.org/10.3390/cells11203208. Publicado • 10.3390/cells11203208 Inácio, Vera; Santos, Raquel; Prazeres, Rafael; Graça, José; Miguel, Célia; Morais-Cecílio, Leonor. "Epigenetics at the crossroads of secondary growth regulation". Frontiers in Plant Science 13 (2022): http://dx.doi.org/10.3389/fpls.2022.970342. Acesso aberto • Publicado • 10.3389/fpls.2022.970342 Modesto, Inês; Inácio, Vera; Novikova, Polina; Carrasquinho, Isabel; Van de Peer, Yves; Miguel, Célia. Autor correspondente: Miguel, Célia. "SNP Detection in Pinus pinaster Transcriptome and Association with Resistance to Pinewood Nematode". Forests 13 6 (2022): 946. http://dx.doi.org/10.3390/f13060946. Publicado • 10.3390/f13060946 Sousa, Filipe; Costa, Joana; Ribeiro, Carla; Varandas, Marta; Pina-Martins, Francisco; Simões, Fernanda; Matos, José; et al. "Population structure in Quercus suber L. revealed by nuclear microsatellite markers". PeerJ 10 (2022): e13565. http://dx.doi.org/10.7717/peerj.13565. Publicado • 10.7717/peerj.13565 Modesto, Inês; Inácio, Vera; Van de Peer, Yves; Miguel, Célia. Autor correspondente: Miguel, Célia. "MicroRNA-mediated post-transcriptional regulation of Pinus pinaster response and resistance to pinewood nematode". Scientific Reports 12 1 (2022): http://dx.doi.org/10.1038/s41598-022-09163-3. Publicado • 10.1038/s41598-022-09163-3 Alves, Ana; Confraria, Ana; Lopes, Susana; Costa, Bruno; Perdiguero, Pedro; Milhinhos, Ana; Baena-González, Elena; Correia, Sandra; Miguel, Célia. Autor correspondente: Miguel, Célia. "miR160 Interacts in vivo With Pinus pinaster AUXIN RESPONSE FACTOR 18 Target Site and Negatively Regulates Its Expression During Conifer Somatic Embryo Development". Frontiers in Plant Science 13 (2022): http://dx.doi.org/10.3389/fpls.2022.857611. Publicado • 10.3389/fpls.2022.857611 Modesto, Inês; Sterck, Lieven; Arbona, Vicent; Gómez-Cadenas, Aurelio; Carrasquinho, Isabel; Van de Peer, Yves; Miguel, Célia M.. Autor correspondente: Miguel, Célia M.. "Insights Into the Mechanisms Implicated in Pinus pinaster Resistance to Pinewood Nematode". Frontiers in Plant Science 12 (2021): http://dx.doi.org/10.3389/fpls.2021.690857. Acesso aberto • Publicado • 10.3389/fpls.2021.690857 Augusta Costa; Inês Barbosa; Célia Miguel; José Graça. "Variation of cork porosity along the stem in harvested cork oak (Quercus suber L.) trees". Annals of Forest Science 78 2 (2021): https://doi.org/10.1007/s13595-021-01068-x. 10.1007/s13595-021-01068-x Alves, Ana; Cordeiro, Daniela; Correia, Sandra; Miguel, Célia. "Small Non-Coding RNAs at the Crossroads of Regulatory Pathways Controlling Somatic Embryogenesis in Seed Plants". Plants 10 3 (2021): 504. http://dx.doi.org/10.3390/plants10030504. Acesso aberto • Publicado • 10.3390/plants10030504 Harrow, Jennifer; Hancock, John; Blomberg, Niklas; Brunak, Søren; Capella-Gutierrez, Salvador; Durinx, Christine; Evelo, Chris T.; et al. "ELIXIR-EXCELERATE: establishing Europe's data infrastructure for the life science research of the future". The EMBO Journal (2021): http://dx.doi.org/10.15252/embj.2020107409. Publicado • 10.15252/embj.2020107409 Miguel, Célia. "CorkOakDB—The Cork Oak Genome Database Portal". Database 2020 (2020): http://dx.doi.org/10.1093/database/baaa114. 10.1093/database/baaa114 Miguel, Célia. "Comprehensive analysis of the isomiRome in the vegetative organs of the conifer Pinus pinaster under contrasting water availability". Plant, Cell & Environment (2020): http://dx.doi.org/10.1111/pce.13976. 10.1111/pce.13976 Miguel, Célia. "ACAULIS5 Is Required for Cytokinin Accumulation and Function During Secondary Growth of Populus Trees". Frontiers in Plant Science 11 (2020): http://dx.doi.org/10.3389/fpls.2020.601858. 10.3389/fpls.2020.601858 Miguel, Célia. "Molecular study of drought response in the Mediterranean conifer Pinus pinaster Ait.: Differential transcriptomic profiling reveals constitutive water deficit-independent drought tolerance mechanisms". Ecology and Evolution (2020): http://dx.doi.org/10.1002/ece3.6613. 10.1002/ece3.6613 Papoutsoglou, Evangelia A.; Faria, Daniel; Arend, Daniel; Arnaud, Elizabeth; Athanasiadis, Ioannis N.; Chaves, Inês; Coppens, Frederik; et al. "Enabling reusability of plant phenomic datasets with MIAPPE 1.1". New Phytologist (2020): http://dx.doi.org/10.1111/nph.16544. 10.1111/nph.16544 Augusta Costa; Inês Barbosa; Miguel Pestana; Célia Miguel. "Modelling bark thickness variation in stems of cork oak in south-western Portugal". European Journal of Forest Research (2020): https://doi.org/10.1007/s10342-020-01273-9. 10.1007/s10342-020-01273-9 Lopes, Susana T; Sobral, Daniel; Costa, Bruno; Perdiguero, Pedro; Chaves, Inês; Costa, Augusta; Miguel, Célia M. "Phellem versus xylem: genome-wide transcriptomic analysis reveals novel regulators of cork formation in cork oak". Tree Physiology (2019): http://dx.doi.org/10.1093/treephys/tpz118. Publicado • 10.1093/treephys/tpz118 Andreia S. Rodrigues; Inês Chaves; Bruno Vasques Costa; Yao-Cheng Lin; Susana Lopes; Ana Milhinhos; Yves Van de Peer; Célia M. Miguel. "Small RNA profiling in Pinus pinaster reveals the transcriptome of developing seeds and highlights differences between zygotic and somatic embryos". Scientific Reports (2019): https://doi.org/10.1038/s41598-019-47789-y. 10.1038/s41598-019-47789-y Rodrigues, Ana Margarida; Miguel, Célia; Chaves, Inês; António, Carla. "Mass spectrometry-based forest tree metabolomics". Mass Spectrometry Reviews (2019): http://dx.doi.org/10.1002/mas.21603. 10.1002/mas.21603 Miguel, Célia. "NEP-TC a rRNA Methyltransferase Involved on Somatic Embryogenesis of Tamarillo (Solanum betaceum Cav.)". (2019): http://dx.doi.org/10.3389/fpls.2019.00438. 10.3389/fpls.2019.00438 Andreia S. Rodrigues; José J. De Vega; Célia M. Miguel. "Comprehensive assembly and analysis of the transcriptome of maritime pine developing embryos". BMC Plant Biology (2018): https://doi.org/10.1186/s12870-018-1564-2. 10.1186/s12870-018-1564-2 Marta Martins; Ana Silva; Maria H. Costa; Célia Miguel; Pedro M. Costa. "Co-exposure to environmental carcinogens in vivo induces neoplasia-related hallmarks in low-genotoxicity events, even after removal of insult". Scientific Reports 8 1 (2018): https://doi.org/10.1038/s41598-018-21975-w. 10.1038/s41598-018-21975-w Ramos, Antonio Marcos; Usie, Ana; Barbosa, Pedro; Barros, Pedro M.; Capote, Tiago; Chaves, Ines; Simoes, Fernanda; et al. "Data Descriptor: The draft genome sequence of cork oak". Scientific Data 5 (2018): http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000432673700001&KeyUID=WOS:000432673700001. 10.1038/sdata.2018.69 Chaves I; Costa B; Rodrigues AS; Bohn A; Miguel CM. "miRPursuit - a pipeline for automated analyses of small RNAs in model and non-model plants.". (2017): http://europepmc.org/abstract/med/28686301. 10.1002/1873-3468.12746 Andreia S. Rodrigues; Célia M. Miguel. "The pivotal role of small non-coding RNAs in the regulation of seed development". Plant Cell Reports (2017): https://doi.org/10.1007%2Fs00299-017-2120-5. 10.1007/s00299-017-2120-5 Miguel, Célia. "The SHORT-ROOT-like gene PtSHR2B is involved in Populus phellogen activity". Journal of Experimental Botany (2016): 10.1093/jxb/erv547 Miguel, A.; de Vega-Bartol, J.; Marum, L.; Chaves, I.; Santo, T.; Leitão, J.; Varela, M. C.; Miguel, C. M.. "Characterization of the cork oak transcriptome dynamics during acorn development". BMC Plant Biol 15 1 (2015): 158-158. 10.1186/s12870-015-0534-1 Gomes, Andreia; Pimpao, Rui C.; Fortalezas, Sofia; Figueira, Ines; Miguel, Celia; Aguiar, Carlos; Salgueiro, Ligia; et al. "Chemical characterization and bioactivity of phytochemicals from Iberian endemic Santolina semidentata and strategies for ex situ propagation". Industrial Crops and Products 74 (2015): 505-513. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000360948900066&KeyUID=WOS:000360948900066. 10.1016/j.indcrop.2015.04.037 Modesto, Inês S.; Miguel, Célia; Pina-Martins, Francisco; Glushkova, Maria; Veloso, Manuela; Paulo, Octávio S.; Batista, Dora. "Identifying signatures of natural selection in cork oak (Quercus suber L.) genes through SNP analysis". Tree Genetics & Genomes 10 6 (2014): 1645-1660. http://dx.doi.org/10.1007/s11295-014-0786-1. Publicado • 10.1007/s11295-014-0786-1 Pereira-Leal, José B; Abreu, Isabel A; Alabaça, Cláudia S; Almeida, Maria; Almeida, Paulo; Almeida, Tânia; Amorim, Maria; et al. "A comprehensive assessment of the transcriptome of cork oak (Quercus suber) through EST sequencing". BMC Genomics 15 1 (2014): 371. http://dx.doi.org/10.1186/1471-2164-15-371. Acesso aberto • Publicado • 10.1186/1471-2164-15-371 Chaves, Ines; Lin, Yao-Cheng; Pinto-Ricardo, C.; Van de Peer, Yves; Miguel, Celia. "miRNA profiling in leaf and cork tissues of Quercus suber reveals novel miRNAs and tissue-specific expression patterns". Tree Genetics & Genomes 10 3 (2014): 721-737. 10.1007/s11295-014-0717-1 Canales, Javier; Bautista, Rocio; Label, Philippe; Gomez-Maldonado, Josefa; Lesur, Isabelle; Fernandez-Pozo, Noe; Rueda-Lopez, Marina; et al. "De novo assembly of maritime pine transcriptome: implications for forest breeding and biotechnology". Plant Biotechnology Journal 12 3 (2014): 286-299. 10.1111/pbi.12136 Gomes, Andreia; Fortalezas, Sofia; Pimpão, Rui; Figueira, Inês; Maroco, João; Aguiar, Carlos; Ferreira, Ricardo; Miguel, Célia; Santos, Cláudia. "Valuing the Endangered Species Antirrhinum lopesianum: Neuroprotective Activities and Strategies for in vitro Plant Propagation". Antioxidants 2 4 (2013): 273-292. http://dx.doi.org/10.3390/antiox2040273. Acesso aberto • Publicado • 10.3390/antiox2040273 de Vega-Bartol, J.J.; Santos, R.R.; Simões, M.; Miguel, C.M.. "Normalizing gene expression by quantitative PCR during somatic embryogenesis in two representative conifer species: Pinus pinaster and Picea abies". Plant Cell Reports 32 5 (2013): 715-729. http://www.scopus.com/inward/record.url?eid=2-s2.0-84876079521&partnerID=MN8TOARS. 10.1007/s00299-013-1407-4 Milhinhos, A.; Prestele, J.; Bollhöner, B.; Matos, A.; Vera-Sirera, F.; Rambla, J.L.; Ljung, K.; et al. "Thermospermine levels are controlled by an auxin-dependent feedback loop mechanism in Populus xylem". Plant Journal 75 4 (2013): 685-698. http://www.scopus.com/inward/record.url?eid=2-s2.0-84882455661&partnerID=MN8TOARS. 10.1111/tpj.12231 de Vega-Bartol, J.J.; Simões, M.; Lorenz, W.W.; Rodrigues, A.S.; Alba, R.; Dean, J.F. D.; Miguel, C.M.. "Transcriptomic analysis highlights epigenetic and transcriptional regulation during zygotic embryo development of Pinus pinaster". BMC Plant Biology 13 1 (2013): http://www.scopus.com/inward/record.url?eid=2-s2.0-84883158133&partnerID=MN8TOARS. 10.1186/1471-2229-13-123 Milhinhos, A.; Miguel, C.M.. "Hormone interactions in xylem development: A matter of signals". Plant Cell Reports 32 6 (2013): 867-883. http://www.scopus.com/inward/record.url?eid=2-s2.0-84877837329&partnerID=MN8TOARS. 10.1007/s00299-013-1420-7 Marum, L.; Miguel, A.; Ricardo, C.P.; Miguel, C.. "Reference gene selection for quantitative real-time PCR normalization in quercus suber". PLoS ONE 7 4 (2012): http://www.scopus.com/inward/record.url?eid=2-s2.0-84859966383&partnerID=MN8TOARS. 10.1371/journal.pone.0035113 Costa, P.M.; Milhinhos, A.; Simões, M.; Marum, L.; Oliveira, A.M.; Costa, M.H.; Miguel, C.. "Determining DNA strand breakage from embryogenic cell cultures of a conifer species using the single-cell gel electrophoresis assay". Tree Genetics and Genomes 8 2 (2012): 425-430. http://www.scopus.com/inward/record.url?eid=2-s2.0-84858619348&partnerID=MN8TOARS. 10.1007/s11295-011-0434-y Costa, P.M.; Miguel, C.; Caeiro, S.; Lobo, J.; Martins, M.; Ferreira, A.M.; Caetano, M.; et al. "Transcriptomic analyses in a benthic fish exposed to contaminated estuarine sediments through laboratory and in situ bioassays". Ecotoxicology 20 8 (2011): 1749-1764. http://www.scopus.com/inward/record.url?eid=2-s2.0-80054924869&partnerID=MN8TOARS. 10.1007/s10646-011-0708-z Miguel, C.; Marum, L.. "An epigenetic view of plant cells cultured in vitro: Somaclonal variation and beyond". Journal of Experimental Botany 62 11 (2011): 3713-3725. http://www.scopus.com/inward/record.url?eid=2-s2.0-79960541784&partnerID=MN8TOARS. 10.1093/jxb/err155 Santos, A.M.; Oliver, M.J.; Sánchez, A.M.; Payton, P.R.; Gomes, J.P.; Miguel, C.; Oliveira, M.M.. "An integrated strategy to identify key genes in almond adventitious shoot regeneration". Journal of Experimental Botany 60 14 (2009): 4159-4173. http://www.scopus.com/inward/record.url?eid=2-s2.0-70349667462&partnerID=MN8TOARS. 10.1093/jxb/erp250 Marum, L.; Loureiro, J.; Rodriguez, E.; Santos, C.; Oliveira, M.M.; Miguel, C.. "Flow cytometric and morphological analyses of Pinus pinaster somatic embryogenesis". Journal of Biotechnology 143 4 (2009): 288-295. http://www.scopus.com/inward/record.url?eid=2-s2.0-70249123783&partnerID=MN8TOARS. 10.1016/j.jbiotec.2009.08.001 Marum, L.; Rocheta, M.; Maroco, J.; Oliveira, M.M.; Miguel, C.. "Analysis of genetic stability at SSR loci during somatic embryogenesis in maritime pine (Pinus pinaster)". Plant Cell Reports 28 4 (2009): 673-682. http://www.scopus.com/inward/record.url?eid=2-s2.0-67049109709&partnerID=MN8TOARS. 10.1007/s00299-008-0668-9 Miguel, C.; Simões, M.; Oliveira, M.M.; Rocheta, M.. "Envelope-like retrotransposons in the plant kingdom: Evidence of their presence in gymnosperms (Pinus pinaster)". Journal of Molecular Evolution 67 5 (2008): 517-525. http://www.scopus.com/inward/record.url?eid=2-s2.0-55949130857&partnerID=MN8TOARS. 10.1007/s00239-008-9168-3 Tereso, S.; Miguel, C.M.; Mascarenhas, M.; Roque, A.; Trindade, H.; Maroco, J.; Oliveira, M.M.. "Improved in vitro rooting of Prunus dulcis Mill. cultivars". Biologia Plantarum 52 3 (2008): 437-444. http://www.scopus.com/inward/record.url?eid=2-s2.0-51649115096&partnerID=MN8TOARS. 10.1007/s10535-008-0088-2 Costa, M.; Miguel, C.; Oliveira, M.M.. "Improved conditions for agrobacterium-mediated transformation of almond". Acta Horticulturae 738 (2007): 575-582. http://www.scopus.com/inward/record.url?eid=2-s2.0-45249084849&partnerID=MN8TOARS. Gonçalves, S.; Cairney, J.; Rodríguez, M.P.; Cánovas, F.; Oliveira, M.; Miguel, C.. "PpRab1, a Rab GTPase from maritime pine is differentially expressed during embryogenesis". Molecular Genetics and Genomics 278 3 (2007): 273-282. http://www.scopus.com/inward/record.url?eid=2-s2.0-34547891577&partnerID=MN8TOARS. 10.1007/s00438-007-0247-8 Tereso, S.; Zoglauer, K.; Milhinhos, A.; Miguel, C.; Oliveira, M.M.. "Zygotic and somatic embryo morphogenesis in Pinus pinaster: Comparative histological and histochemical study". Tree Physiology 27 5 (2007): 661-669. http://www.scopus.com/inward/record.url?eid=2-s2.0-34250880166&partnerID=MN8TOARS. 10.1093/treephys/27.5.661 Rocheta, M.; Cordeiro, J.; Oliveira, M.; Miguel, C.. "PpRT1: The first complete gypsy-like retrotransposon isolated in Pinus pinaster". Planta 225 3 (2007): 551-562. http://www.scopus.com/inward/record.url?eid=2-s2.0-33846796288&partnerID=MN8TOARS. 10.1007/s00425-006-0370-5 Costa, M.S.; Miguel, C.; Oliveira, M.M.. "An improved selection strategy and the use of acetosyringone in shoot induction medium increase almond transformation efficiency by 100-fold". Plant Cell, Tissue and Organ Culture 85 2 (2006): 205-209. http://www.scopus.com/inward/record.url?eid=2-s2.0-33646511146&partnerID=MN8TOARS. 10.1007/s11240-005-9073-z Tereso, S.; Gonçalves, S.; Marum, L.; Oliveira, M.; Maroco, J.; Miguel, C.. "Improved axillary and adventitious bud regeneration from Portuguese genotypes of Pinus pinaster AIT". Propagation of Ornamental Plants 6 1 (2006): 24-33. http://www.scopus.com/inward/record.url?eid=2-s2.0-33645560836&partnerID=MN8TOARS. Tereso, S.; Miguel, C.; Maroco, J.; Oliveira, M.M.. "Susceptibility of embryogenic and organogenic tissues of maritime pine (Pinus pinaster) to antibiotics used in Agrobacterium-mediated genetic transformation". Plant Cell, Tissue and Organ Culture 87 1 (2006): 33-40. http://www.scopus.com/inward/record.url?eid=2-s2.0-33749651696&partnerID=MN8TOARS. 10.1007/s11240-006-9130-2 Tereso, S.; Miguel, C.; Zoglauer, K.; Valle-Piquera, C.; Oliveira, M.M.. "Stable Agrobacterium-mediated transformation of embryogenic tissues from Pinus pinaster Portuguese genotypes". Plant Growth Regulation 50 1 (2006): 57-68. http://www.scopus.com/inward/record.url?eid=2-s2.0-33751509025&partnerID=MN8TOARS. 10.1007/s10725-006-9126-2 Gonçalves,Sónia; Cairney,John; Oliveira,Margarida; Miguel,Célia. "Identification of Differentially Expressed Genes During Embryogenesis in Maritime Pine (Pinus pinaster)". Silva Lusitana (2005): http://www.scielo.mec.pt/scielo.php?script=sci_arttext&pid=S0870-63522005000200005. Publicado Gonçalves, S.; Cairney, J.; Maroco, J.; Oliveira, M.M.; Miguel, C.. "Evaluation of control transcripts in real-time RT-PCR expression analysis during maritime pine embryogenesis". Planta 222 3 (2005): 556-563. http://www.scopus.com/inward/record.url?eid=2-s2.0-26644438574&partnerID=MN8TOARS. 10.1007/s00425-005-1562-0 Marum, L.; Estêvão, C.; Oliveira, M.M.; Amâncio, S.; Rodrigues, L.; Miguel, C.. "Recovery of cryopreserved embryogenic cultures of maritime pine - Effect of cryoprotectant and suspension density". Cryo-Letters 25 5 (2004): 363-374. http://www.scopus.com/inward/record.url?eid=2-s2.0-9344264580&partnerID=MN8TOARS. Miguel, C.; Gonçalves, S.; Tereso, S.; Marum, L.; Maroco, J.; Oliveira, M.M.. "Somatic embryogenesis from 20 open-pollinated families of Portuguese plus trees of maritime pine". Plant Cell, Tissue and Organ Culture 76 2 (2004): 121-130. http://www.scopus.com/inward/record.url?eid=2-s2.0-0842309398&partnerID=MN8TOARS. 10.1023/B:TICU.0000007253.91771.e3 Raquel, M.H.; Miguel, C.; Nolasco, G.; Oliveira, M.M.. "Construction and testing of a transformation vector aiming at introducing pdv resistance in almond". Acta Horticulturae 521 (2000): 73-81. http://www.scopus.com/inward/record.url?eid=2-s2.0-0013349043&partnerID=MN8TOARS. Miguel, C.M.; Oliveira, M.M.. "Transgenic almond (Prunus dulcis Mill.) plants obtained by Agrobacterium-mediated transformation of leaf explants". Plant Cell Reports 18 5 (1999): 387-393. http://www.scopus.com/inward/record.url?eid=2-s2.0-0032894158&partnerID=MN8TOARS. 10.1007/s002990050591 Miguel, C.; Sanchez, A.; Martins, M.; Oliveira, M.M.; Raquel, M.H.; Nolasco, G.; Ferreira, E.L.. "In vitro culture and improvement of Portuguese almond varieties". Acta Horticulturae 470 (1998): 562-569. http://www.scopus.com/inward/record.url?eid=2-s2.0-84879205829&partnerID=MN8TOARS. Miguel, C.M.; Druart, P.; Oliveira, M.M.. "Shoot regeneration from adventitious buds induced on juvenile and adult almond (Prunus dulcis Mill.) explants". In Vitro Cellular and Developmental Biology - Plant 32 3 (1996): 148-153. http://www.scopus.com/inward/record.url?eid=2-s2.0-0030463244&partnerID=MN8TOARS. 10.1007/BF02822758 MIGUEL, C.M.; PAIS, M.S.S.. "Induction of somatic embryogenesis in Cynara cardunculus L. (Compositae)". Acta Botanica Neerlandica 42 3 (1993): 341-347. http://www.scopus.com/inward/record.url?eid=2-s2.0-84995047976&partnerID=MN8TOARS. 10.1111/j.1438-8677.1993.tb00710.x
Artigo em revista (magazine)	Miguel, Célia M.. "Uma Perspectiva da Investigação em Biotecnologia Florestal@iBET", PINUSPRESS Newsletter, 2012, https://www.centropinus.org/files/upload/pinuspress/pinus-press30.pdf. Oliveira, M. Margarida; Miguel, Célia. "Uma perspectiva científica das potencialidades e ameaças que pesam sobre a floresta portuguesa", Revista Portugalglobal - destaque, 2010, www.portugalglobal.pt.
Capítulo de livro	Pommier, Cyril; Coppens, Frederik; Cwiek-Kupczynska, Hanna; Faria, Daniel; Beier, Sebastian; Miguel, Célia; Michotey, Célia; et al. Autor correspondente: Pommier, Cyril. "Plant Science Data Integration, from Building Community Standards to Defining a Consistent Data Lifecycle". In Towards Responsible Plant Data Linkage: Data Challenges for Agricultural Research and Development, 149-160. Springer International Publishing, 2023. Publicado • 10.1007/978-3-031-13276-6_8 Inês Modesto; Célia M. Miguel. "Regulatory Roles of Small RNAs in Forest Trees". Springer Berlin Heidelberg, 2023. 10.1007/124_2023_75 Sterck, Lieven; de María, Nuria; Cañas, Rafael A.; de Miguel, Marina; Perdiguero, Pedro; Raffin, Annie; Budde, Katharina B.; et al. "Maritime Pine Genomics in Focus". In Compendium of Plant Genomes, 67-123. Springer International Publishing, 2022. Publicado • 10.1007/978-3-030-93390-6_5 Alves, Ana; Rodrigues, Andreia S.; Miguel, Célia. "microRNAs in Plant Embryogenesis". In Concepts and Strategies in Plant Sciences, editado por Célia M. Miguel; Tamas Dalmay; Inês Chaves, 99-120. Springer International Publishing, 2020. 10.1007/978-3-030-35772-6_6 Milhinhos, Ana; Lopes, Susana; Miguel, Célia. "microRNA-Mediated Regulation of Plant Vascular Development and Secondary Growth". In Concepts and Strategies in Plant Sciences, editado por Célia M. Miguel; Tamas Dalmay; Inês Chaves, 143-168. Springer International Publishing, 2020. 10.1007/978-3-030-35772-6_8 Lelu-Walter, M.-A.; Klimaszewska, K.; Miguel, C.; Aronen, T.; Hargreaves, C.; Teyssier, C.; Trontin, J.-F.; Miguel, Célia. "Somatic embryogenesis for more effective breeding and deployment of improved varieties in Pinus spp.: Bottlenecks and recent advances". In New Phytologist. 2016. 10.1007/978-3-319-33705-0_19 Miguel, Célia; Andrea Rupps; Raschke J; Rodrigues, Andreia; Trontin, Jean-Francois. "Impact of molecular studies on somatic embryogenesis development for implementation in conifer multi-varietal forestry". In Vegetative Propagation of Forest Trees, editado por Park YS; Bonga JM; Moon HK, 123-169. Seoul, Coreia do Sul: National Institute of Forest Science, 2016. Publicado Miguel, Célia; Maria Margarida Oliveira; Costa MS. "Almond". editado por Kole C; Hall TC. Oxford, Reino Unido: Blackwell Publishing, 2008. 10.1002/9781405181099.k0409
Documento de trabalho	Miguel, Célia; Cyril Pommier; Gruden, Kristina; Astrid Junker; Coppens, Frederik; Richard Finkers; Keywan Hassani-Pak; et al. 2021. "ELIXIR Plant sciences 2020-2023 Roadmap". https://f1000research.com/documents/10-145. 10.7490/f1000research.1118482.1
Edição de livro	Miguel, Célia. Plant microRNAs - shaping development and environmental responses. Springer International Publishing. 2020. 10.1007/978-3-030-35772-6 • Editor Miguel, Célia. Present and Future of Cork Oak in Portugal. Oeiras, Portugal: Sociedade Portuguesa de Fisiologia Vegetal. 2012. Editor
Poster em conferência	Mendes, André; Modesto, Inês; Inácio, Vera; Milhinhos, Ana; Cabezas, José; Cervera, Maria; Novikova, Polina; et al. "Integrative Molecular Analysis of Pine Wilt Disease Response in Maritime Pine: Small RNA Profiling and SNP Discover". Trabalho apresentado em 3rd EUGLOH Plant Science Meeting, 2023. Santos, Raquel; Ferreira, Ana; Prazeres, Rafael; Mendes, André; Milhinhos, Ana; Morais-Cecílio, Leonor; Maury, Stephane; Miguel, Célia; Inácio, Vera. "Uncovering the relationship between DNA methylation and periderm formation". Trabalho apresentado em 3rd EUGLOH Plant Science Meeting, 2023. Ferreira, Ana Clara; Santos, Raquel; Miguel, Célia; Morais-Cecílio, Leonor; Inácio, Vera. "Altering DNA methylation in cork oak to study its effect on cork formation". Trabalho apresentado em EUGLOH Plant Science Meeting 2023, 2023. Mendes, André; Modesto, Inês; Inácio, Vera; Milhinhos, Ana; Cabezas, José; Cervera, Maria; Novikova, Polina; et al. "An Integrated Approach Towards the Molecular Characterisation of Pine Wilt Disease in Maritime Pine". Trabalho apresentado em berian Plant Biology 2023, 2023. Santos, Raquel; Prazeres, Rafael; Ana Milhinhos; Barros, Pedro; Graça, José; Morais-Cecílio, Leonor; Miguel, Célia; Inácio, Vera. "EpiCORK: Unveiling the role of DNA methylation in periderm formation". Trabalho apresentado em Ciências Research Day 2022, 2022. Barros, Pedro M.; Chaves, Inês; Costa, Bruno Vasques; Faria, Daniel; Marum, Liliana; Miguel, Célia M.; Saibo, Nelson; et al. "Data management in Plant Sciences: update on the BioData.pt Plant Sciences community". Trabalho apresentado em 1st All Hands / 3rd Technical Meeting of BIODATA.PT \| ELIXIR PT, 2022. 10.5281/zenodo.10467148 Prazeres, Rafael; Ana Milhinhos; Barros, Pedro; Graça, José; Morais-Cecílio, Leonor; Miguel, Célia; Inácio, Vera. "Unravelling the role of DNA methylation in cork formation". Trabalho apresentado em The 20th IUFRO Tree Biotech and the 2nd FTMB (Forest Tree Molecular Biology and Biotechnology) Conference, 2022. Inácio, Vera; Modesto, Inês; Ana Milhinhos; Silva, Catarina; Cabezas, Jose Antonio; Cervera, María Teresa; Miguel, Célia. "Genome-wide association study of Pinus pinaster resistance to pinewood nematode". Trabalho apresentado em The 20th IUFRO Tree Biotech and the 2nd FTMB (Forest Tree Molecular Biology and Biotechnology) Conference, 2022. Mendes, André; Modesto, Inês; Milhinhos, Ana; Inácio, Vera; Miguel, Célia. Autor correspondente: Miguel, Célia. "Characterization of microRNAs implicated in maritime pine resistance to pinewood nematode". Trabalho apresentado em III International Meeting of the Portuguese Society of Genetics, 2022. Chaves, Inês; Barros, Danielle; Batista, D; Miguel, Célia; Ricardo, Cândido P; Varzea, Vitor; Guerra-Guimarães, Leonor. "Small-RNA characterization of Coffee Leaf Rust races having different virulence profiles. Selected Flash Talk". Trabalho apresentado em 28th International Conference on Coffee Science (ASIC), 28th June - 1st July 2021, Montpellier, France, 2021. Laureano, Alexandre; Rodrigues, Ana Sofia; Modesto, Inês Sofia Barrios; Macedo, Cíntia; Diniz, Inês; Varzea, Vitor; Azinheira, Helena; et al. "A high genomic variability is found among Hemileia vastatrix pathotypes". Trabalho apresentado em 6th cE3c Annual Meeting: Frontiers in E3, Online, 2020. Costa, Bruno Vasques; Chaves, Inês; Miguel, Célia M.; Silva, Mário. "Building the Plant miRNA Service". Trabalho apresentado em Elixir all hands 2018, 2018. https://doi.org/10.7490/f1000research.1115759.1 Modesto, Inês; Loureiro, Andreia; Martins, R.; Pereira, Ana Paula; Varzea, Vitor; Paulo, Octavio; Batista, Dora; Miguel, Célia. "Analysis of expression in a putative pathogenesis-related gene of coffee leaf rust". Trabalho apresentado em 15th Congress of the European Society for Evolutionary Biology (ESEB2015), 2015. Paulo, Octavio; Pina-Martins, Francisco; Modesto, Inês; Ribeiro, C.; Costa, J.; Miguel, Célia; Batista, Dora. "Genomic signatures of contrasting adaptation in cork oak populations across the species´ range.". Trabalho apresentado em 15th Congress of the European Society for Evolutionary Biology (ESEB2015), 2015. Milhinhos, Ana; Matos, Andreia; Miguel, Célia M.. "The Populus HD-ZIP III genes PTRHB7 and PTRHB8 have novel, yet conserved, functions on organ polarity. 24-28 Jul, XIII FV2013 Portuguese-Spanish Plant Physiology Meeting, Lisbon, Portugal.". Trabalho apresentado em XIII FV2013 Portuguese-Spanish Plant Physiology Meeting, 2013. Modesto, Inês; Miguel, Célia; Pina-Martins, Francisco; Glushkova, M.; Veloso, M.; Batista, Dora; Paulo, Octavio. "Identifying signatures of natural selection in cork oak (Quercus suber L.) genes". Trabalho apresentado em 14th Congress of the European Society for Evolutionary Biology (ESEB2013, 2013. Ribeiro, C.; Rodrigues, A.; Miguel, Célia; Almeida, H.; Glushkova, M.; Paulo, Octavio; Batista, Dora. "Looking for molecular clues of local adaptation in cork oak through a candidate gene approach.". Trabalho apresentado em XIII Congresso Luso-Espanhol de Fisiologia Vegetal (FV2013), 2013. Modesto, Inês; Miguel, Célia; Pina-Martins, Francisco; Glushkova, M.; Veloso, M.; Paulo, Octavio; Batista, Dora. "Assessing adaptive genetic variation in cork oak (Quercus suber L.) through SNP analysis.". Trabalho apresentado em XIII Congresso Luso-Espanhol de Fisiologia Vegetal (FV2013), 2013. Modesto, IS; Miguel, Célia; Pina-Martins, Francisco; Glushkova, M.; Veloso, M.; Paulo, Octavio; Batista, Dora. "Testing associations between genetic and environmental variation in cork oak (Quercus suber L.)". Trabalho apresentado em IUFRO Tree Biotechnology 2013, 2013. Milhinhos, Ana; Matos, Andreia; Miguel, Célia M.. "Searching for the function of poplar HD-Zip III transcription factors in vascular development: the paralogs HB7/HB8. XXXVII Portuguese Genetics Conference, 28-30 May, Lisbon, Portugal.". Trabalho apresentado em XXXVII Portuguese Genetics Conference, 2012. Modesto, Inês S.; Miguel, Célia; Pina-Martins, Francisco; Maria Glushkova; Veloso, M; Paulo, Octávio S.; Batista, Dora. "Population frequency data of SNP markers in cork oak.". Trabalho apresentado em IUFRO 2012 conference ¿Genetics of Fagaceae and Nothofagaceae¿, 2012. Milhinhos, Ana; Matos, Andreia; Vera-Sirera, Francisco; Blázquez, Miguel A.; Miguel, Célia M.. "In search for the role of thermospermine synthase gene in poplar vascular development. IUFRO Tree Biotechnology Conference 2011: From Genomes to Integration and Delivery, Jun 26-Jul 2, Arraial d Ajuda, Bahia, Brazil.". Trabalho apresentado em IUFRO 2011 Tree Biotechnology Conference, 2011. Ribeiro, C.; Almeida, MH; Rodrigues, A.; Miguel, Célia; Pereira, JS; Batista, Dora. "Candidate gene approach for the study of adaptive genetic variation in cork oak". Trabalho apresentado em VII Encontro Nacional de Biologia Evolutiva (ENBE), 2011. Miguel, Célia M.; Oliveira, Ana Maria; Marum, Liliana; Simões, Marta; Milhinhos, Ana. "Optimizing somatic embryogenesis in pine for characterization of candidate genes involved in pinewood nematode response. XVIII Congress of the Federation of European Societies of Plant Biology (FESPB), 4-9 Jul, Valencia, Spain.". Trabalho apresentado em XVIII Congress of the Federation of European Societies of Plant Biology (FESPB), 2010. Oliveira, Ana Maria; Marum, Liliana; Milhinhos A; Simões, Marta; Miguel, Célia M.. "Brassinolide promotes somatic embryogenesis in pine. XXXI Portuguese Genetics Conference, May 31¿Jun 2, Braga, Portugal.". Trabalho apresentado em XXXI Portuguese Genetics Conference, 2010. Milhinhos, Ana; Miguel, Célia M.. "Class III HD-Zip transcription factors in Populus genome ¿ XXXI Portuguese Genetics Conference, May 31¿Jun 2, Braga, Portugal.". Trabalho apresentado em XXXI Portuguese Genetics Conference, 2010. Milhinhos, Ana; Miguel, Célia M.. "The role of ACAULIS5 in poplar vascular development. International Conference ¿Molecular aspects of plant development¿, 23-26 Feb, Vienna, Austria.". Trabalho apresentado em International Conference ¿Molecular aspects of plant development¿, 2010. Costa, JS.; Simões, F.; Almeida, MH; Matos, JA.; Miguel, Célia; Oliveira, MM.; Veloso, M.; et al. "Unraveling genetic variation in Cork Oak Natural Populations". Trabalho apresentado em II Trends in Biodiversity and Evolution - TiBE2010 (CIBIO), 2010. Costa, JS.; Simões, F.; Almeida, MH; Matos, J.; Miguel, Célia; Oliveira, MM; Veloso, M.; et al. "First Results on the Phylogeographical Genetic Variation of Portuguese Cork Oak Populations". Trabalho apresentado em XXXV Jornadas Portuguesas de Genética, 2010. Miguel Andreia; Milhinhos, Ana; Pinto Ricardo, Cândido; Miguel, Célia M.. "Identification and characterization of the transcription factor short-root (SHR) in Quercus suber. 8th Plant GEM - Plant Genomics European Meeting, 7-10 Oct, Lisbon, Portugal.". Trabalho apresentado em 8th Plant GEM - Plant Genomics European Meeting, 2009. Milhinhos, Ana; Miguel, Célia M.. "Class III HD-Zip transcription factors in Populus genome. 2nd Poplar Symposium ¿From Genes to Function¿ 11-13 Mar, Göttingen, Germany.". Trabalho apresentado em 2nd Poplar Symposium ¿From Genes to Function¿, 2009. Milhinhos, Ana; Currais Lara; Tereso, Susana; Oliveira, M.Margarida; Miguel, Célia M.. "Genetically modified Pinus pinaster with genes related to nitrogen metabolism. XVIth National Congress of Biochemistry, 22-25 Oct, Ponta Delgada, Portugal.". Trabalho apresentado em XVIth National Congress of Biochemistry, 2008. Milhinhos, Ana; Tereso, Susana; Oliveira, M.Margarida; Miguel, Célia M.. "Transformation of maritime pine for functional characterization of genes related to nitrogen metabolism. Plant Transformation Technologies International Conference, 4-7 Feb, Vienna, Austria". Trabalho apresentado em Plant Transformation Technologies International Conference, 2007. Milhinhos, Ana; Miguel, Célia M.; Oliveira, M.Margarida; Tereso, Susana. "A transgenic approach for functional characterization of genes related to nitrogen metabolism in maritime pine. XV National Congress of Biochemistry, 8-10 Dec, Aveiro, Portugal.". Trabalho apresentado em XV National Congress of Biochemistry, 2006.
Recurso online	Miguel, Célia; Arias-Baldrich Cirenia; Bergeretti, Filippo; Chaves, Inês; Saibo, Nelson; Sobral, Daniel; Faria, Daniel; Barros, Pedro. CorkOakDB. 2020. http://corkoakdb.org. Miguel, Célia; Bruno Vasques Costa; Chaves, Inês; Mario Gaspar da Silva. Plant sRNA Portal. 2019. https://srna-portal.biodata.pt. Miguel, Célia; Bruno Vasques Costa; Faria, Daniel; Chaves, Inês; André Cordeiro. PHENO. 2018. https://brapi.biodata.pt.

Outros

Conjunto de dados

Miguel, Célia. Enabling reusability of plant phenomic datasets with MIAPPE 1.1 - Supplementary dataset.
10.15454/1yxvzv

Atividades

Apresentação oral de trabalho

	Título da apresentação	Nome do evento Anfitrião (Local do evento)
2023/11	Characterizing candidate genes involved in the suberization dynamics of Arabidopsis	3rd EUGLOH Plant Science Meeting & 7th Meeting in Functional Biology and Biotechnology of Plants Universidade do Porto Faculdade de Ciências (Porto, Portugal)
2023/06	EpiCORK: Unveiling the role of DNA methylation in periderm formation	EPI-CATCH Conference 2023: EPIgenetic mechanisms of Crop Adaptation to Climate cHange (Sofia, Bulgária)
2022/07/07	Pinus pinaster resistance to pine wilt disease: uncovering early molecular responses and mechanisms involved	2022 IUFRO / FTMB Conference (Harbin, China)
2022/06/30	Defense mechanisms highlighted by the transcriptional response of Pinus pinaster to pinewood nematode	Webinar “Pine Wilt Disease: recent advances in molecular analyses and breeding approaches”
2022/06/30	MicroRNAs as post-transcriptional regulators of response to pinewood nematode infection	Webinar “Pine Wilt Disease: recent advances in molecular analyses and breeding approaches”
2022/06/30	Genomic variability associated with Pinus pinaster resistance to Pinewood Nematode	Webinar “Pine Wilt Disease: recent advances in molecular analyses and breeding approaches”
2022/04/06	Uncovering the mechanisms involved in Pinus pinaster resistance to pine wilt disease by analysis of coding and non-coding transcriptomes	16th Congress of the Mediterranean Phytopathological Union (Limassol, Chipre)
2022/01/27	Making your phenotypic data FAIR: challenges and tools	XV Portuguese Spanish Plant Water Relations Symposium
2021/12/20	Plant Sciences Research and Interoperability	Workshop "My Data Are Your Data – how FAIR and share can boost scientific discovery" BioData.pt
2021/12/02	Maritime pine resistance to pine wilt disease: insights from coding and non-coding transcriptomes	BioISI Research Seminar Series BioISI (Lisbon, Portugal)
2021/07/07	Investigating miRNA-dependent auxin responses during somatic embryogenesis in conifers	Biologia de Plantas Universidade de Vigo (Espanha)
2021/06/22	Bringing the ELIXIR plant data infrastructure to the Portuguese pulp and paper industry	Workshop Knowledge Translation to the Agricultural Technology Industry BioData.pt
2020/10/06	Plant Sciences activities of the Portuguese node of ELIXIR	Webinar series: National bioinformatics communities in ELIXIR ELIXIR Europe
2020/09/25	Genomic and genetic approaches to identify molecular markers of resistance to pine wilt disease in Pinus pinaster	Workshop “Biotechnology/Synthetic Biology Approaches to Forestry Management” ITQB NOVA (Portugal)
2020/09/22	The BioDta.pt Plant Sciences Community	Webinar series BioData.pt Talks BioData Portugal (Portugal)
2020/06/10	MIAPPE 1.1: Building upon an existing standard for better plant phenomics data FAIRness	ELIXIR Virtual All Hands ELIXIR - European life-sciences Infrastructure for biological Information (Virtual)
2019/08	Candidate genes involved in cork cambium activity and phellem differentiation highlighted by transcriptomic analysis	4th International Symposium on Plant Apoplastic Diffusion Barriers (PADiBa) (Bonn, Alemanha)
2019/06	Maritime pine genome sequence and analysis	IUFRO Tree Biotechnology Conference 2019 (Raleigh NC, Estados Unidos)
2019/06	Identification of molecular regulators involved in the formation of Quercus super cork tissues	IUFRO Tree Biotechnology Conference 2019 (Raleigh, NC, Estados Unidos)
2018/09	The transcriptome of maritime pine across embryo development	Clonal Trees in the Bioeconomy Age: Opportunities and Challenges - 5th IUFRO 2.09.02 Working Party Conference Universidade de Coimbra Faculdade de Ciências (Coimbra)
2018/09	Transcriptional identification and characterization of differentially expressed miRNAs involved in conifer embryogenesis	Clonal Trees in the Bioeconomy Age: Opportunities and Challenges - 5th IUFRO 2.09.02 Working Party Conference Universidade de Coimbra Faculdade de Ciências e Tecnologia (Coimbra, Portugal)
2018/01	Data standards for plant phenotyping: MIAPPE and its implementations	PAG XXVI - Plant and Animal Genome Conference (San Diego, Estados Unidos)
2018	Identification of genes involved in the resistance response of Pinus pinaster to the pinewood nematode infection	Tree Resistance Workshop 2018 (Mt. Sterling, OH, Estados Unidos)
2017/10	Differential gene expression analysis reveals different responses to pine wilt disease between susceptible and tolerant maritime pine seedlings	Proteção das Plantas 2017 - 2º Simpósio SCAP de Proteção das Plantas; 8º Congresso da Sociedade Portuguesa de Fitopatologia e 11º Encontro Nacional de Proteção Integrada (Santarém, Portugal)
2017/09	Differentiation of suberized phellem cells: unravelling transcriptional and post-transcriptional regulatory mechanisms	3rd International Symposium on Plant Apoplastic Diffusion Barriers (PADiBa) (Oeiras, Portugal)
2017	Molecular study of drought response in the Mediterranean conifer Pinus pinaster Ait: Protein-coding transcript profiling	IUFRO Tree Biotechnology 2017 (Concépcion, Chile)
2016/09	Identification of regulatory miRNA-target nodes across embryo development in Pinus pinaster	Somatic Embryogenesis and Other Vegetative Propagation Technologies - Fourth International Conference of the IUFRO 2.09.02 Working Party Universidad de La Plata (La Plata, Argentina)
2016/04	ELIXIR – the European distributed infrastructure for life-science information: how can it impact forestry research?	Trees4Future final conference: Designing trees for the future: data is the cornerstone (Brussels, Bélgica)

Orientação

	Título / Tema Papel desempenhado	Curso (Tipo) Instituição / Organização
2024/02/01 - Atual	Periderm development: from molecular genetics to tree physiology Orientador	Biology (Doutoramento) Fundação da Faculdade de Ciências da Universidade de Lisboa, Portugal
2022/05 - Atual	DNA methylation role in the periderm barrier formation Orientador	Systems Biology - BioSys2 (Doutoramento) Universidade de Lisboa Faculdade de Ciências, Portugal
2019/12/01 - Atual	PhD thesis - Characterizing novel plant miRNA regulation processes with machine learning methods Coorientador	Bioinformatics (Doutoramento) Universidade de Lisboa Faculdade de Ciências, Portugal
2017 - Atual	Dissecting molecular pathways involved in periderm function and differentiation Orientador	Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal
2022/09 - 2024/02	Cork-associated genes in the suberization dynamics of Arabidopsis tissues: a contribution for their functional characterization Coorientador	Biologia Molecular e Genética (Mestrado) Universidade de Lisboa Faculdade de Ciências, Portugal
2022/09 - 2023/09	Building molecular tools for cork-associated genes expression analysis in vivo to study the suberization dynamics in Arabidopsis endodermis Coorientador	Molecular Biology and Genetics (Mestrado) Universidade de Lisboa Faculdade de Ciências, Portugal
2021/09 - 2023/02	Patterns of suberization in root tissues of Arabidopsis thaliana mutants Coorientador	Molecular Biology and Genetics (Mestrado) Universidade de Lisboa Faculdade de Ciências, Portugal
2016 - 2023/01/31	Exploring genetic variability of Pinus pinaster in the molecular response pathways to the pinewood nematode (PWN) as a source of markers for assisted selection Orientador	Plants for Life (Doutoramento) Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal
2021 - 2023	Metabolic shifts associated with drought and drought-like symptoms induced by pine pitch canker disease Coorientador	Biology of Plant Resources (Mestrado) Fundação da Faculdade de Ciências da Universidade de Lisboa, Portugal Universidade de Aveiro, Portugal
2017/09/01 - 2023	PhD thesis - Characterizing functional roles of candidate miRNAs in conifer embryogenesis Orientador	Biology (Doutoramento) Universidade de Lisboa Faculdade de Ciências, Portugal
2021/09 - 2022/12	Characterization of microRNAs implicated in maritime pine resistance to pinewood nematode Orientador	Biolopgy of Plant Resources (Mestrado) Universidade de Lisboa Faculdade de Ciências, Portugal Universidade de Lisboa Instituto Superior de Agronomia, Portugal
2021/09 - 2022/11	Construction of inducible expression vectors to produce phellogen-specific loss-of-function DNA methyltransferase mutants Coorientador	Biotechnology (Mestrado) Universidade de Lisboa Faculdade de Ciências, Portugal Universidade NOVA de Lisboa Faculdade de Ciências e Tecnologia, Portugal
2019/06 - 2021/02	Master thesis - Optimizing the quantification of the pine wood nematode (Bursaphelenchus xylophilus) in Pinus pinaster L. through quantitative PCR Orientador	Agronomic Engineering (Mestrado) Universidade de Lisboa Faculdade de Ciências, Portugal
2012/06/01 - 2020/02	PhD thesis - Molecular regulation of Pinus pinaster embryo development - insights from the coding and non-coding transcriptomes Orientador de Andreia Rodrigues	Biology (Doutoramento) Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal
2017/09 - 2019/09	Master thesis - Expression profiling of rust resistance-related genes in coffee and development of a virus induced gene silencing (VIGS)-based tool for functional analysis Coorientador	Molecular Biology and Genetics (Mestrado) Universidade de Lisboa Faculdade de Ciências, Portugal
2016/09 - 2017/09	Master thesis - Integrative analysis of datasets obtained from Pinus pinaster ait. during water stress response Coorientador	Bioinformática y Biología Computacional - Escuela Nacional de Salud- instituto de Salud Carlos III, Madrid, Spain (Mestrado) Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal
2014/09 - 2016/12	Master thesis - Molecular analysis of the response of Pinus pinaster plants with differential behavior towards the pine wood nematode infection Orientador	Molecular Biology, Biotechnology and Entreprenernship (Mestrado) Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal
2014 - 2016	Master thesis - Molecular analysis of microRNA/target gene interactions in the pine seed Orientador	Molecular Genetics and Biomedicine (Mestrado) Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal
2008/07 - 2014/07	PhD thesis - Molecular Regulation of Phellogen Activity – An Insight into Cork Formation Orientador	Biology (Doutoramento) Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal
2007/07 - 2013/07	PhD thesis - Genetic and Molecular Analysis of Plant Vascular Development Orientador de Ana Milhinhos	Biology (Doutoramento) Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal
2004/06 - 2009/06	PhD thesis - Evaluation of the stability of embryogenic cultures and of emblings of maritime pine (Pinus pinaster Ait.) using molecular markers Coorientador de Liliana Marum	Biology (Doutoramento) Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal
2001/12 - 2005/12	PhD thesis - Embryo development in maritime pine – a differential gene expression approach Orientador de Sónia Gonçalves	Biology (Doutoramento) Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal
2000/04 - 2005/04	PhD thesis - In vitro clonal propagation systems and genetic transformation system of maritime pine (Pinus pinaster) Coorientador de Susana Tereso	Biology (Doutoramento) Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal
2001/09/01 - 2003/09	Master thesis - Cryopreservation of embryogenic cultures of Pinus pinaster Orientador	Plant production (Mestrado) Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal

Organização de evento

	Nome do evento Tipo de evento (Tipo de participação)	Instituição / Organização
2022 - 2022	Webinar Pine Wilt Disease: recent advances in molecular analyses and breeding approaches (2022/06/30 - 2022/06/30) Oficina (workshop) (Presidente da Comissão Organizadora)
2011/10/06 - 2011/10/06	Floresta 2050. Pensar o Futuro, Oeiras, Portugal. Organizing Committee. Approximately 50 delegates attended the meeting. (2011/10/06 - 2011/10/06) Encontro (Membro da Comissão Organizadora)	Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal
2009/10/07 - 2009/10/10	8th Plant Genomics European Meeting, Lisbon, Portugal. Organizing Committee. Plant GEM is an international annual conference joining researchers from Europe and all over the world to discuss latest developments and to exchange new ideas for future projects and to improve cooperation. Over 300 delegates attended the meeting. (2009/10/07 - 2009/10/10) Conferência (Membro da Comissão Organizadora)	Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal
2007/06/03 - 2007/06/08	IUFRO Tree Biotechnology 2007. This conference is held every two years and is the official meeting of the IUFRO Working Group 2.04.06 (Molecular biology of forest trees). Approximately 200 delegates attended the conference. (2007/06/03 - 2007/06/08) Conferência (Membro da Comissão Organizadora)	Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal

Júri de grau académico

	Tema Tipo de participação	Nome do candidato (Tipo de grau) Instituição / Organização
2023/10	Characterization of candidate microRNAs involved in the regulation of conifer embryogenesis Orientador	Ana Cristina Alves (Doutoramento) Universidade de Lisboa Faculdade de Ciências, Portugal
2023/10	Genetic variation and trait plasticity in plant defence suppression Vogal	Jéssica Paulo (Doutoramento) Universidade de Lisboa Faculdade de Ciências, Portugal
2023/01	Exploring genetic variability of Pinus pinaster in the molecular response pathways to the pinewood nematode as a source of markers for assisted selection Orientador	Inês Modesto (Doutoramento) Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal
2023	Study of flower induction and fructification mechanisms in Castanea sativa Mill. Arguente principal	Ana Teresa Talhinhas Barata Alhinho (Doutoramento) Universidade do Minho, Portugal
2022/09	Molecular and histological approaches to unravel Castanea spp. responses to Phytophthora cinnamomi infection Arguente principal	Patrícia Fernandes (Doutoramento) Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica António Xavier, Portugal
2021/11	Histologic and molecular characterization of root phellem development and suberization – from Arabidopsis thaliana to Quercus suber Arguente principal	Ana Rita Leal (Doutoramento) Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica António Xavier, Portugal
2021/09	Deciphering Pinus defence response against Fusarium circinatum: from physiology to Omics Arguente principal	Joana Amaral (Doutoramento) Universidade de Aveiro, Portugal
2020	Molecular regulation of Pinus pinaster embryo development: insights from the coding and non-coding transcriptomes Orientador	Andreia Rodrigues (Doutoramento) Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica António Xavier, Portugal
2019/11	Characterization of flower induction and fertilization of Quercus suber Arguente principal	Helena Silva (Doutoramento) Universidade do Minho, Portugal
2019/07	Unveiling the genetic and epigenetic signatures of cork differentiation and quality Arguente	Vera Inácio (Doutoramento) Universidade de Lisboa Instituto Superior de Agronomia, Portugal
2018	Unraveling the genomics of adaptation of Colletotrichum kahawae to Coffea arabica. Vogal	Ana Cristina Vieira (Doutoramento) Universidade de Lisboa Faculdade de Ciências, Portugal
2018	Plant salinity tolerance: from the gene family to a single species perspective Vogal	inês Pires (Doutoramento) Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica António Xavier, Portugal
2018	An innovative integrated approach to characterize coffee resistance mechanisms to Colletotrichum kahawae Arguente principal	Inês Diniz (Doutoramento) Universidade de Lisboa Instituto Superior de Agronomia, Portugal
2016	Insights into the epigenetic regulation of the rice genome: the role of DNA methylation and histone modifications in salt stress responses Vogal	Liliana Ferreira (Doutoramento) Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica António Xavier, Portugal
2015	Essential oils as anti-nematode agents and their influence on in vitro nematode/plant co-cultures Arguente	Jorge Faria (Doutoramento) Universidade de Lisboa Faculdade de Ciências, Portugal
2014	Molecular and biotechnological approaches to essential oils production in Thymus caespititius Vogal	Marta Mendes (Doutoramento) Universidade de Lisboa Faculdade de Ciências, Portugal
2014	Molecular regulation of phellogen activity – an insight into cork formation Orientador	Andreia Miguel (Doutoramento) Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica António Xavier, Portugal
2014	A Multi-scale study of P. pinaster adaptive response to drought applying molecular and functional approaches Arguente principal	Marina de Miguel Vega (Doutoramento) Universidad de Alcalá, Espanha
2013	Molecular regulation of cork development - the role of transcription factor QsR2R3Myb Arguente principal	Tânia Almeida (Doutoramento) Universidade de Aveiro, Portugal
2013	Genetic and Molecular Analysis of Plant Vascular Development Orientador	Ana Milhinhos (Doutoramento) Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica António Xavier, Portugal
2005	Embryo development in maritime pine – a differential gene expression approach Orientador	Sónia Gonçalves (Doutoramento) Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica António Xavier, Portugal

Arbitragem científica em conferência

	Nome da conferência	Local da conferência
2022/03/10 - 2022/03/11	Applied Bioinformatics in the Life Sciences 4th edition	VIB Conferences
2019/11/12 - 2019/11/12	Plant Phenotyping-Genotyping Data Management Workshop	ITQB NOVA
2018/09/10 - 2018/09/15	5th IUFRO 2.09.02 Working Party Conference - Clonal Trees in the Bioeconomy Age: Opportunities and Challenges	University of Coimbra
2017/09/13 - 2017/09/15	PADiBa 2017, International Symposium on Plant Apoplastic Diffusion Barriers	ITQB NOVA, Oeiras, Portugal
2017/03/27 - 2017/03/28	3rd General COST Meeting Workshop, COST Action 'The quest for tolerant varieties: phenotyping at plant and cellular level (FA1306)	ITQB NOVA, Oeiras, Portugal
2011/10/21 - 2011/10/21	Present and Future of Cork Oak in Portugal	Instituto de Tecnologia Química e Biológica, Oeiras, Portugal

Arbitragem científica em revista

	Nome da revista (ISSN)	Editora
2020/12 - Atual	Frontiers in Plant Science

Comissão de avaliação

	Descrição da atividade Tipo de assessoria	Instituição / Organização	Entidade financiadora
2021 - Atual	Evaluation of graduation courses for the Agência de Avaliação e Acreditação do Ensino Superior (A3ES) Avaliador

Consultoria / Parecer

	Descrição da atividade	Instituição / Organização
2021 - Atual	Consultant in FCT project "Unveiling core REgulatory MOdules acting on the crosstalk between cork Development and EnvironmentaL factors – CorkREMODEL" coordinated by Pedro Barros (ITQB NOVA)	Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal
2012 - 2015	Consultant in the project PlantBioNem - Plant biotechnology in nematodes invasion mechanism elucidation (2012-2015): National FCT project PTDC/AGR-CFL/117026/2010. Coordinated by Ana Cristina Fuigueiredo, University of Lisbon	Instituto de Biologia Experimental e Tecnológica, Portugal
2010 - 2013	Consultant in the project "Identification of genes responsible for drought tolerance in Jatropha curcas, an emerging biodiesel plant" (2010-2013): National FCT project PTDC/AGR-GPL/101435/2008. Coordinated by Margarida Oliveira, ITQB-UNL	Instituto de Biologia Experimental e Tecnológica, Portugal

Membro de comissão

	Descrição da atividade Tipo de participação	Instituição / Organização
2019 - 2023/12	Scientific Advisory Board of ELIXIR Belgium Membro
2014/01/01 - 2023	Directive Board of the International PhD program Plants for Life Membro	Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal
2013/04/01 - 2016/08/31	Executive Committee of the ITQB-UNL PhD Program Molecular Biosciences Membro	Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal

Distinções

Prémio

2015	Prémio Empreendedorismo e Inovação Crédito Agrícola - project GENOSUBER (coordinated by CEBAL)
2015	Prémio Vida Rural Alqueva - Project Genosuber coordinated by CEBAL

Outra distinção

2009	Fundo EDP Biodiversidade 2009 (in collaboration with the ITQB Disease and Stress Biology Lab, Universidade Coimbra and Jardim Botânico da Universidade de Lisboa) EDP, Portugal