???global.info.a_carregar???
I am the Professor of Palaeogenomics at the University of Copenhagen (Denmark), Professor II at NTNU University Museum (Norway), and Director of the Danish National Research Foundation Center for Evolutionary Hologenomics. My research interests span the development and implementation of new techniques in palaeogenomics, to combining host genome alongside their associated microbiome data when addressing questions of both basic and applied scientific relevance. In the context of the collapse and extinction of species, my team are generating and analysed temporal genomic datasets of a range of mammal and bird species, in order to address questions such as how to species specific traits condition the genomic consequences to population collapse, and what are the technical limits to ancient genome reconstruction.
Identificação

Identificação pessoal

Nome completo
Marcus Thomas Pius Gilbert

Nomes de citação

  • Gilbert, Marcus
  • M Thomas P Gilbert

Identificadores de autor

Ciência ID
F11D-DE83-D4EF
ORCID iD
0000-0002-5805-7195

Telefones

Telemóvel
  • (+45) 23712519 (Profissional)

Domínios de atuação

  • Ciências Naturais - Ciências Biológicas - Biologia da Evolução das Espécies

Idiomas

Idioma Conversação Leitura Escrita Compreensão Peer-review
Inglês (Idioma materno)
Dinamarquês Utilizador proficiente (C1) Utilizador proficiente (C1) Utilizador independente (B2) Utilizador proficiente (C1) Utilizador proficiente (C1)
Formação
Grau Classificação
2003 - 2005
Concluído
Post-doctoral Research Associate (Postgraduate Certificate)
The University of Arizona Department of Ecology and Evolutionary Biology, Estados Unidos
2000 - 2003
Concluído
D.Phil (Doctor of Philosophy)
University of Oxford New College, Reino Unido
"An assessment of the use of human samples in ancient DNA studies" (TESE/DISSERTAÇÃO)
1997 - 2000
Concluído
BA Biological Sciences (Bachelor (1.º ciclo de estudos))
University of Oxford Oriel College, Reino Unido
Percurso profissional

Ciência

Categoria Profissional
Instituição de acolhimento
Empregador
2019 - 2019 Investigador principal (carreira) (Investigação) Københavns Universitet Globe Institute, Dinamarca
2011 - 2018 Investigador principal (carreira) (Investigação) Københavns Universitet Statens Naturhistoriske Museum, Dinamarca
2005 - 2007 Pós-doutorado (Investigação) Københavns Universitet Niels Bohr Instituttets Bibliotek, Dinamarca

Docência no Ensino Superior

Categoria Profissional
Instituição de acolhimento
Empregador
2016 - Atual Professor Catedrático (Docente Universitário) Norges teknisk-naturvitenskapelige universitet Vitenskapsmuseet, Noruega
2011 - 2011 Professor Catedrático (Docente Universitário) Københavns Universitet Statens Naturhistoriske Museum, Dinamarca
2009 - 2010 Professor Associado (Docente Universitário) Københavns Universitet Statens Naturhistoriske Museum, Dinamarca
2008 - 2008 Professor Associado (Docente Universitário) Københavns Universitet Biologisk Institut, Dinamarca

Cargos e Funções

Categoria Profissional
Instituição de acolhimento
Empregador
2020 - 2020 Director de Unidade Orgânica Danmarks Grundforskningsfond, Dinamarca
Produções

Publicações

Artigo em conferência
  1. James Doonan; K.B. Budde; Albin Lobo; Chatchai Kosawang; R. Verbylaite; A. Pliura; B. Ulaszewski; et al. "Genome-wide re-sequencing reveals the adaptive potential of European ash (Fraxinus excelsior)". 2022.
  2. D. Maghradze; A. Aslanishvili; I. Mdinaradze; D. Tkemaladze; L. Mekhuzla; D. Lordkipanidze; M. Jalabadze; et al. "Progress for research of grape and wine culture in Georgia, the South Caucasus". 2019.
    10.1051/bioconf/20191203003
  3. Anne Lisbeth Schmidt; M Thomas P Gilbert; Enrico Cappellini; Jesper Olsen. "Identification of animal species in skin clothing from museum collections". 2011.
Artigo em revista
  1. Ostaizka Aizpurua; Amanda Bolt Botnen; Raphael Eisenhofer; Iñaki Odriozola; Luisa Santos-Bay; Mads Bjørn Bjørnsen; M. Thomas P. Gilbert; Antton Alberdi. "Functional Insights Into the Effect of Feralisation on the Gut Microbiota of Cats Worldwide". Molecular Ecology (2025): https://doi.org/10.1111/mec.17695.
    10.1111/mec.17695
  2. Anne Marie Høier Eriksen; Juan Antonio Rodríguez; Frederik Seersholm; Hege Ingjerd Hollund; Anne Birgitte Gotfredsen; Matthew James Collins; Bjarne Grønnow; et al. "Exploring DNA degradation in situ and in museum storage through genomics and metagenomics". Communications Biology (2025): https://doi.org/10.1038/s42003-025-07616-9.
    10.1038/s42003-025-07616-9
  3. Alexander B Rogers; Varsha Kale; Germana Baldi; Antton Alberdi; M Thomas P Gilbert; Dipayan Gupta; Morten T Limborg; et al. "HoloFood Data Portal: holo-omic datasets for analysing host–microbiota interactions in animal production". Database (2025): https://doi.org/10.1093/database/baae112.
    10.1093/database/baae112
  4. Sergei Kliver; Iva Kovacic; Sarah Mak; Mikkel-Holger S. Sinding; Julia Stagegaard; Bent Petersen; Joseph Nesme; M Thomas P Gilbert. "A chromosome phased diploid genome assembly of African hunting dog (Lycaon pictus)". The Journal of Heredity 116 1 (2025): 78-87. https://researchprofiles.ku.dk/en/publications/a-chromosome-phased-diploid-genome-assembly-of-african-hunting-dog-lycaon-pictus(141dbfbc-bcd5-4255-a7fb-95c2217eb2a0).html.
    10.1093/jhered/esae052
  5. James Doonan; Chatchai Kosawang; Albin Lobo; Erik Kjaer; M Thomas P Gilbert; Lene Nielsen. "Multiple, Single Trait GWAS and Supervised Machine Learning Reveal the Genetic Architecture of Fraxinus excelsior Tolerance to Ash Dieback in Europe". Plant, Cell and Environment (2025): https://researchprofiles.ku.dk/en/publications/multiple-single-trait-gwas-and-supervised-machine-learning-reveal-the-genetic-architecture-of-fraxinus-excelsior-tolerance-to-ash-dieback-in-europe(e1a4c6f4-729f-4ff3-80e3-ad94b4ab1bd4).html.
    10.1111/pce.15361
  6. Jazmín Ramos-Madrigal; Gayle J. Fritz; Bryon Schroeder; Bruce Smith; Fátima Sánchez Barreiro; Christian Carøe; Anne Kathrine Runge; et al. "The genomic origin of early maize in eastern North America". Cell 188 1 (2025): 33-43.e16. https://researchprofiles.ku.dk/en/publications/the-genomic-origin-of-early-maize-in-eastern-north-america(db45c1f7-6534-42b8-8648-45ae30b4080e).html.
    10.1016/j.cell.2024.11.003
  7. Jacob Agerbo Rasmussen; Annette Bernhard; Laurène A. Lecaudey; Varsha Kale; Germana Baldi; Lene S. Myrmel; Martin Hansen; et al. "A holo-omics analysis shows how sugar kelp can boost gut health in Atlantic salmon". Aquaculture 597 (2025): https://researchprofiles.ku.dk/en/publications/a-holoomics-analysis-shows-how-sugar-kelp-can-boost-gut-health-in-atlantic-salmon(249555a5-5a3c-4781-9335-a02f985eccac).html.
    10.1016/j.aquaculture.2024.741913
  8. Jennifer Rose; M. Thomas P. Gilbert; Mark Outerbridge; Hernán E. Morales. "Evolutionary genomics analysis reveals a unique lineage of Megachile pruina found in an isolated population in Bermuda". Insect Conservation and Diversity (2024): https://doi.org/10.1111/icad.12776.
    10.1111/icad.12776
  9. Xin Sun; Emily Louisa Cavill; Ashot Margaryan; Jianqing Lin; Søren Thingaard; Tamrini A. Said; Shyam Gopalakrishnan; M. Thomas P. Gilbert. "A Genomic Exploration of the Possible De-Extirpation of the Zanzibar Leopard". Molecular Ecology (2024): https://doi.org/10.1111/mec.17566.
    10.1111/mec.17566
  10. Morten T. Limborg; Caroline S. Winther-Have; Naia Morueta-Holme; M. Thomas P. Gilbert; Jacob A. Rasmussen. "The overlooked biodiversity loss". Trends in Ecology & Evolution (2024): https://doi.org/10.1016/j.tree.2024.08.001.
    10.1016/j.tree.2024.08.001
  11. Hernán E. Morales; Jim J. Groombridge; Simon Tollington; Sion Henshaw; Vikash Tatayah; Kevin Ruhomaun; Cock van Oosterhout; et al. "The genome sequence of the Mauritius parakeet, Alexandrinus eques (formerly Psittacula eques) (A.Newton & E. Newton, 1876) [version 1; peer review: 2 approved]". (2024): https://wellcomeopenresearch.org/articles/9-378/v1.
    10.12688/wellcomeopenres.22583.1
  12. Hernán E. Morales; Cock van Oosterhout; Harriet Whitford; Vikash Tatayah; Kevin Ruhomaun; Jim J. Groombridge; M. Thomas P. Gilbert; et al. "The genome sequence of the Pink Pigeon, Nesoenas mayeri (Prévost, 1843) [version 1; peer review: 1 approved, 1 not approved]". (2024): https://wellcomeopenresearch.org/articles/9-336/v1.
    10.12688/wellcomeopenres.22471.1
  13. Jan Laine; Sarah S.T. Mak; Nuno F.G. Martins; Xihan Chen; M. Thomas P. Gilbert; Felicity C. Jones; Mikkel Winther Pedersen; Anders Romundset; Andrew D. Foote. "Late Pleistocene stickleback environmental genomes reveal the chronology of freshwater adaptation". Current Biology (2024): https://doi.org/10.1016/j.cub.2024.01.056.
    10.1016/j.cub.2024.01.056
  14. Caroline Isabel Kothe; Jacob Agerbo Rasmussen; Sarah Mak; M Thomas P Gilbert; Joshua Evans. "Exploring the microbial diversity of novel misos with metagenomics". Food Microbiology 117 (2024): https://curis.ku.dk/portal/en/publications/exploring-the-microbial-diversity-of-novel-misos-with-metagenomics(9b3a4586-a4a8-422a-87cc-060770cc22f4).html.
    10.1016/j.fm.2023.104372
  15. Christopher Barnes; Maria Sophie Bünner; M. Rosario Ramírez-Flores; Ida Broman Nielsen; Jazmín Ramos-Madrigal; Daria Zharikova; Chloee M. McLaughlin; M Thomas P Gilbert; Ruairidh J. H. Sawers. "The ancestral environment of teosinte populations shapes their root microbiome". Environmental Microbiome 19 (2024): https://researchprofiles.ku.dk/en/publications/the-ancestral-environment-of-teosinte-populations-shapes-their-root-microbiome(f27e5d4a-bc58-4c19-9f47-ab86eab7b39e).html.
    10.1186/s40793-024-00606-0
  16. Marianne Dehasque; Hernan Morales; David Díez-del-Molino; Patrícia Pecnerová; J. Camilo Chacón-Duque; Foteini Kanellidou; Héloïse Muller; et al. "Temporal dynamics of woolly mammoth genome erosion prior to extinction". Cell 187 14 (2024): 3531-3540.e13. https://researchprofiles.ku.dk/en/publications/temporal-dynamics-of-woolly-mammoth-genome-erosion-prior-to-extinction(177486e9-fdcc-4831-ad53-6e64328ee411).html.
    10.1016/j.cell.2024.05.033
  17. Conor Rossi; Mikkel-Holger S. Sinding; Victoria E. Mullin; Amelie Scheu; Jolijn A.M. Erven; Marta Pereira Verdugo; Kevin G. Daly; et al. "The genomic natural history of the aurochs". Nature 635 8037 (2024): 136-141. https://researchprofiles.ku.dk/en/publications/the-genomic-natural-history-of-the-aurochs(09402bb8-fcbf-4b23-96ba-b196f4fa3003).html.
    10.1038/s41586-024-08112-6
  18. Jaelle C. Brealey; Miyako Kodama; Jacob Agerbo Rasmussen; Søren B. Hansen; Luisa Santos-Bay; Laurène A. Lecaudey; Martin Hansen; et al. "Host-gut microbiota interactions shape parasite infections in farmed Atlantic salmon". mSystems 9 2 (2024): https://researchprofiles.ku.dk/en/publications/hostgut-microbiota-interactions-shape-parasite-infections-in-farmed-atlantic-salmon(a3b0b1ba-c6ee-4701-8af9-cc9109b463d3).html.
    10.1128/msystems.01043-23
  19. Marcela Sandoval-Velasco; Olga Dudchenko; Juan Antonio Rodríguez; Cynthia Pérez Estrada; Marianne Dehasque; Claudia Fontsere; Sarah Mak; et al. "Three-dimensional genome architecture persists in a 52,000-year-old woolly mammoth skin sample". Cell 187 14 (2024): 3541-3562.e51. https://researchprofiles.ku.dk/en/publications/threedimensional-genome-architecture-persists-in-a-52000yearold-woolly-mammoth-skin-sample(19d1a798-e0d8-4d16-bc9d-c32e7c8ffa75).html.
    10.1016/j.cell.2024.06.002
  20. Hernan Morales; Ken Norris; Sion Henshaw; Vikash Tatayah; Kevin Ruhomaun; Cock van Oosterhout; Jim J. Groombridge; et al. "The genome sequence of the Mauritius kestrel, Falco punctatus (Temminck, 1821)". Wellcome Open Research 9 (2024): https://researchprofiles.ku.dk/en/publications/the-genome-sequence-of-the-mauritius-kestrel-falco-punctatus-temminck-1821(0eea0af1-a810-4c82-9488-8118c67c4d5f).html.
    10.12688/wellcomeopenres.22452.1
  21. Josefin Stiller; Shaohong Feng; Al-Aabid Chowdhury; Iker Rivas-González; David A. Duchêne; Qi Fang; Yuan Deng; et al. "Complexity of avian evolution revealed by family-level genomes". Nature 629 (2024): 851–860-851–860. https://researchprofiles.ku.dk/en/publications/complexity-of-avian-evolution-revealed-by-familylevel-genomes(37fc3650-5be5-4a8c-a307-649de21c39b1).html.
    10.1038/s41586-024-07323-1
  22. Thomas R. Sewell; Lucy van Dorp; Pria N. Ghosh; Claudia Wierzbicki; Christian Caroe; John V. Lyakurwa; Elena Tonelli; et al. "Archival mitogenomes identify invasion by the Batrachochytrium dendrobatidis CAPE lineage caused an African amphibian extinction in the wild". Proceedings of the Royal Society B: Biological Sciences 291 2027 (2024): https://researchprofiles.ku.dk/en/publications/archival-mitogenomes-identify-invasion-by-the-batrachochytrium-dendrobatidis-cape-lineage-caused-an-african-amphibian-extinction-in-the-wild(e3eb0e31-b069-4cbd-acd2-3a8ef0ba0ca0).html.
    10.1098/rspb.2024.1157
  23. Emily L. Cavill; Hernan Morales; Xin Sun; Michael V Westbury; Cock van Oosterhout; Wilna Accouche; Anna Zora; et al. "When birds of a feather flock together". Evolutionary Applications 17 7 (2024): https://researchprofiles.ku.dk/en/publications/when-birds-of-a-feather-flock-together(e36bba35-0a82-4b33-80b8-1d387a095928).html.
    10.1111/eva.13739
  24. Martin Rene Ellegaard; S. Sunna Ebenesersdóttir; Kristjan H. S. Moore; Anna Petersén; Åshild J. Vågene; Vanessa C. Bieker; Sean D. Denham; et al. "Corroborating written history with ancient DNA". iScience 27 11 (2024): https://researchprofiles.ku.dk/en/publications/corroborating-written-history-with-ancient-dna(72313a93-002c-464b-a220-2d3d65083f41).html.
    10.1016/j.isci.2024.111076
  25. Cátia Lúcio Pereira; Zeynep Ersoy; M Thomas P Gilbert; Dominique Gravel; Miguel B Araújo; Miguel G Matias. "Future-proofing environmental DNA and trait-based predictions of food webs". BioScience (2023): https://doi.org/10.1093/biosci/biad089.
    10.1093/biosci/biad089
  26. Germán Hernández-Alonso; Jazmín Ramos-Madrigal; Hein van Grouw; Marta Maria Ciucani; Emily Louisa Cavill; Mikkel-Holger S Sinding; Shyam Gopalakrishnan; et al. "Redefining the Evolutionary History of the Rock Dove, Columba livia, Using Whole Genome Sequences". Molecular Biology and Evolution (2023): https://doi.org/10.1093/molbev/msad243.
    10.1093/molbev/msad243
  27. Linett Rasmussen; Claudia Fontsere; Iván D. Soto-Calderón; Rosamira Guillen; Anne Savage; Anders Johannes Hansen; Christina Hvilsom; M. Thomas P. Gilbert. "Assessing the genetic composition of cotton-top tamarins (Saguinus oedipus) before sweeping anthropogenic impact". Molecular Ecology (2023): https://doi.org/10.1111/mec.17130.
    10.1111/mec.17130
  28. Ostaizka Aizpurua; Kees Blijleven; Urvish Trivedi; M. Thomas P. Gilbert; Antton Alberdi. "Unravelling animal–microbiota evolution on a chip". Trends in Microbiology (2023): https://doi.org/10.1016/j.tim.2023.04.010.
    10.1016/j.tim.2023.04.010
  29. Jacob A Rasmussen; Pia Kiilerich; Abdullah S Madhun; Rune Waagbø; Erik-Jan R Lock; Lise Madsen; M Thomas P Gilbert; Karsten Kristiansen; Morten T Limborg. "Co-diversification of an intestinal Mycoplasma and its salmonid host". The ISME Journal (2023): https://doi.org/10.1038/s41396-023-01379-z.
    10.1038/s41396-023-01379-z
  30. Christina Lehmkuhl Noer; Morten T. Limborg; Sandra Breum Andersen; M Thomas P Gilbert; Simon Bahrndorff; Signe Lolle. "Temanummer om hologenomik i Kaskelot". Kaskelot 245 (2023): 12-33. https://curis.ku.dk/portal/en/publications/temanummer-om-hologenomik-i-kaskelot(52155e58-7bff-476f-a2c6-4084ecd67ce8).html.
  31. Ryan R. Germain; Shaohong Feng; Guangji Chen; Gary R. Graves; Joseph A. Tobias; Carsten Rahbek; Fumin Lei; et al. "Species-specific traits mediate avian demographic responses under past climate change". Nature Ecology & Evolution (2023): https://doi.org/10.1038/s41559-023-02055-3.
    10.1038/s41559-023-02055-3
  32. Amanda Bolt Botnen; Mads Bjørn Bjørnsen; Antton Alberdi; M.Thomas P. Gilbert; Ostaizka Aizpurua. "A simplified protocol for DNA extraction from FTA cards for faecal microbiome studies". Heliyon (2023): https://doi.org/10.1016/j.heliyon.2023.e12861.
    10.1016/j.heliyon.2023.e12861
  33. Pnina Cohen; Roberto Bacilieri; Jazmín Ramos-Madrigal; Eyal Privman; Elisabetta Boaretto; Audrey Weber; Daniel Fuks; et al. "Ancient DNA from a lost Negev Highlands desert grape reveals a Late Antiquity wine lineage". PNAS 120 17 (2023): https://curis.ku.dk/portal/en/publications/ancient-dna-from-a-lost-negev-highlands-desert-grape-reveals-a-late-antiquity-wine-lineage(f64e8c6a-6318-4f87-81ea-9530d088a737).html.
    10.1073/pnas.2213563120
  34. Marta Maria Ciucani; Jazmín Ramos-Madrigal; Germán Hernández-Alonso; Alberto Carmagnini; Sabhrina Gita Aninta; Xin Sun; Camilla Hjorth Scharff-Olsen; et al. "The extinct Sicilian wolf shows a complex history of isolation and admixture with ancient dogs". iScience 26 8 (2023): https://curis.ku.dk/portal/en/publications/the-extinct-sicilian-wolf-shows-a-complex-history-of-isolation-and-admixture-with-ancient-dogs(c6ef927d-98cc-4b9d-8972-2f0ddb399b10).html.
    10.1016/j.isci.2023.107307
  35. Fátima Sánchez Barreiro; Binia De Cahsan; Michael V Westbury; Xin Sun; Ashot Margaryan; Claudia Fontsere; Michael W. Bruford; et al. "Historic Sampling of a Vanishing Beast". Molecular Biology and Evolution 40 9 (2023): https://curis.ku.dk/portal/en/publications/historic-sampling-of-a-vanishing-beast(3707d6fd-869f-4a8b-bdd5-a7df842830c9).html.
    10.1093/molbev/msad180
  36. Edward S. Rice; Antton Alberdi; James Alfieri; Giridhar Athrey; Jennifer R. Balacco; Philippe Bardou; Heath Blackmon; et al. "A pangenome graph reference of 30 chicken genomes allows genotyping of large and complex structural variants". BMC Biology 21 (2023): https://curis.ku.dk/portal/en/publications/a-pangenome-graph-reference-of-30-chicken-genomes-allows-genotyping-of-large-and-complex-structural-variants(90a96d3d-9104-4710-98a2-0c0602d96a80).html.
    10.1186/s12915-023-01758-0
  37. Xin Sun; Yue Chen Liu; Mikhail P. Tiunov; Dmitry O. Gimranov; Yan Zhuang; Yu Han; Carlos A. Driscoll; et al. "Ancient DNA reveals genetic admixture in China during tiger evolution". Nature Ecology and Evolution 7 11 (2023): 1914-1929. https://curis.ku.dk/portal/en/publications/ancient-dna-reveals-genetic-admixture-in-china-during-tiger-evolution(d9b49fca-84a7-44e2-b9b0-50fff611d50a).html.
    10.1038/s41559-023-02185-8
  38. Marcela Sandoval-Velasco; Anuradha Jagadeesan; Jazmín Ramos-Madrigal; María C. Ávila-Arcos; Cesar A. Fortes-Lima; Judy Watson; Erna Johannesdóttir; et al. "The ancestry and geographical origins of St Helena's liberated Africans". American Journal of Human Genetics 110 9 (2023): 1590-1599. https://curis.ku.dk/portal/en/publications/the-ancestry-and-geographical-origins-of-st-helenas-liberated-africans(c3692449-d429-4d71-b9e4-d685d9de9863).html.
    10.1016/j.ajhg.2023.08.001
  39. Mikkel Skovrind; George Pacheco; Emil Aputsiaq Flindt Christensen; Shyam Gopalakrishnan; Katharina Fietz; Tore Hejl Holm-Hansen; Filipe G Vieira; et al. "Uncovering neutral and adaptive genomic differentiation among European perch with brackish water and freshwater origin in the western Baltic Sea region". Fisheries Research 268 (2023): https://curis.ku.dk/portal/en/publications/uncovering-neutral-and-adaptive-genomic-differentiation-among-european-perch-with-brackish-water-and-freshwater-origin-in-the-western-baltic-sea-region(653dbf33-4edf-473c-b174-e6ea84c40763).html.
    10.1016/j.fishres.2023.106846
  40. Germán Hernández-Alonso; Jazmín Ramos-Madrigal; Xin Sun; Camilla Hjorth Scharff-Olsen; Mikkel-Holger S. Sinding; Nuno F. Martins; Marta Maria Ciucani; et al. "Conservation implications of elucidating the Korean wolf taxonomic ambiguity through whole-genome sequencing". Ecology and Evolution 13 8 (2023): https://curis.ku.dk/portal/en/publications/conservation-implications-of-elucidating-the-korean-wolf-taxonomic-ambiguity-through-wholegenome-sequencing(46c4f2ff-1273-4689-b107-504e2097da95).html.
    10.1002/ece3.10404
  41. David Díez-del-Molino; Marianne Dehasque; J. Camilo Chacón-Duque; Patrícia Pecnerová; Alexei Tikhonov; Albert Protopopov; Valeri Plotnikov; et al. "Genomics of adaptive evolution in the woolly mammoth". Current Biology 33 9 (2023): https://curis.ku.dk/portal/en/publications/genomics-of-adaptive-evolution-in-the-woolly-mammoth(7b56f2bf-5e04-49b3-b366-7d8b863f4d2d).html.
    10.1016/j.cub.2023.03.084
  42. Søren B. Hansen; Davide Bozzi; Sarah Mak; Cecilie G. Clausen; Tue Nielsen; Miyako Kodama; Lars Hestbjerg Hansen; M Thomas P Gilbert; Morten T. Limborg. "Intestinal epigenotype of Atlantic salmon (Salmo salar) associates with tenacibaculosis and gut microbiota composition". Genomics 115 3 (2023): https://curis.ku.dk/portal/en/publications/intestinal-epigenotype-of-atlantic-salmon-salmo-salar-associates-with-tenacibaculosis-and-gut-microbiota-composition(2ec5d086-07c2-4d39-b4c9-caab09a8731c).html.
    10.1016/j.ygeno.2023.110629
  43. Pei Zhang; Yuanzhen Zhu; Qunfei Guo; Ji Li; Xiaoyu Zhan; Hao Yu; Nianxia Xie; et al. "On the origin and evolution of RNA editing in metazoans". Cell Reports 42 2 (2023): https://curis.ku.dk/portal/en/publications/on-the-origin-and-evolution-of-rna-editing-in-metazoans(3c0f420b-f62d-48c3-b6aa-64c76767c252).html.
    10.1016/j.celrep.2023.112112
  44. Ricardo Rodríguez-Varela; Kristjan H. S. Moore; S. Sunna Ebenesersdóttir; Gulsah Merve Kilinc; Anna Kjellström; Ludvig Papmehl-Dufay; Clara Alfsdotter; et al. "The genetic history of Scandinavia from the Roman Iron Age to the present". Cell 186 1 (2023): 32-46.e19. https://curis.ku.dk/portal/en/publications/the-genetic-history-of-scandinavia-from-the-roman-iron-age-to-the-present(e3f68ee9-2b38-443d-ab9f-829cb939e994).html.
    10.1016/j.cell.2022.11.024
  45. Ryan Ross Germain; Shaohong Feng; Lucas Buffan; Carlos P. Carmona; Guangii Chen; Gary R. Graves; Joseph A. Tobias; et al. "Changes in the functional diversity of modern bird species over the last million years". PNAS 120 7 (2023): https://curis.ku.dk/portal/en/publications/changes-in-the-functional-diversity-of-modern-bird-species-over-the-last-million-years(db53b3a4-3de6-4924-8024-953f265b57d5).html.
    10.1073/pnas.2201945119
  46. Renita Danabalan; Kevin Merkel; Ida Bærholm Schnell; Mimi Arandjelovic; Christophe Boesch; Gregory Brazzola; Paula Dieguez; et al. "Mammal mitogenomics from invertebrate-derived DNA". Environmental DNA 5 5 (2023): 1004-1015. https://curis.ku.dk/portal/en/publications/mammal-mitogenomics-from-invertebratederived-dna(f4669a36-23ad-4e1b-8dad-ab83de16bdbb).html.
    10.1002/edn3.436
  47. Lucie A. Bergeron; Søren Besenbacher; Jiao Zheng; Panyi Li; Mads Frost Bertelsen; Benoit Quintard; Joseph I. Hoffman; et al. "Evolution of the germline mutation rate across vertebrates". Nature 615 (2023): 285-291. https://curis.ku.dk/portal/en/publications/evolution-of-the-germline-mutation-rate-across-vertebrates(d860ae92-55e6-4e4e-9ee1-480f62617565).html.
    10.1038/s41586-023-05752-y
  48. Charles Christian Riis Hansen; Áki Jarl Láruson; Jacob Agerbo Rasmussen; Jesus Adrian Chimal Ballesteros; Mikkel-Holger S. Sinding; Gunnar T. Hallgrimsson; Menja von Schmalensee; et al. "Genomic diversity and differentiation between island and mainland populations of white-tailed eagles (Haliaeetus albicilla)". Molecular Ecology 32 8 (2023): 1925-1942. https://curis.ku.dk/portal/en/publications/genomic-diversity-and-differentiation-between-island-and-mainland-populations-of-whitetailed-eagles-haliaeetus-albicilla(a2fb2cfb-b13a-40b4-b661-27d51a378489).html.
    10.1111/mec.16858
  49. Hein van Grouw; Germán Hernández-Alonso; Emily Cavill; M Thomas P Gilbert. "The Founding Feathers". Bulletin of the British Ornithologists' Club 143 2 (2023): 153-171. https://researchprofiles.ku.dk/en/publications/the-founding-feathers(28c198bc-a631-4289-8a9a-4ca8c61b6fad).html.
    10.25226/bboc.v143i2.2023.a3
  50. Xin Sun; Marta Maria Ciucani; Jacob Agerbo Rasmussen; M. Thomas P. Gilbert; Mikkel-Holger S. Sinding. "Genomic evidence refutes the hypothesis that the Bornean banteng is a distinct species". BMC Ecology and Evolution (2022): https://doi.org/10.1186/s12862-022-02062-1.
    10.1186/s12862-022-02062-1
  51. Emily Louisa Cavill; Shanlin Liu; Xin Zhou; M. Thomas P. Gilbert. "To bee, or not to bee? One leg is the question". Molecular Ecology Resources (2022): https://doi.org/10.1111/1755-0998.13578.
    10.1111/1755-0998.13578
  52. Livia V. Patrono; Bram Vrancken; Matthias Budt; Ariane Düx; Sebastian Lequime; Sengül Boral; M. Thomas P. Gilbert; et al. "Archival influenza virus genomes from Europe reveal genomic variability during the 1918 pandemic". Nature Communications (2022): https://doi.org/10.1038/s41467-022-29614-9.
    10.1038/s41467-022-29614-9
  53. Evelyn L. Jensen; David Díez-del-Molino; M. Thomas P. Gilbert; Laura D. Bertola; Filipa Borges; Vlatka Cubric-Curik; Miguel de Navascués; et al. "Ancient and historical DNA in conservation policy". Trends in Ecology & Evolution 37 5 (2022): 420-429. https://doi.org/10.1016/j.tree.2021.12.010.
    10.1016/j.tree.2021.12.010
  54. Antton Alberdi; Sandra B. Andersen; Morten T. Limborg; Robert R. Dunn; M. Thomas P. Gilbert. "Disentangling host–microbiota complexity through hologenomics". Nature Reviews Genetics (2022): https://doi.org/10.1038/s41576-021-00421-0.
    10.1038/s41576-021-00421-0
  55. Jacob Agerbo Rasmussen; Kasper Rømer Villumsen; Madeleine Ernst; Martin Hansen; Torunn Forberg; Shyam Gopalakrishnan; M. Thomas P. Gilbert; et al. "A multi-omics approach unravels metagenomic and metabolic alterations of a probiotic and synbiotic additive in rainbow trout (Oncorhynchus mykiss)". Microbiome (2022): https://doi.org/10.1186/s40168-021-01221-8.
    10.1186/s40168-021-01221-8
  56. Ricardo Cardoso Neves; Ask Møbjerg; Miyako Kodama; Jazmín Ramos-Madrigal; M Thomas P Gilbert; Nadja Møbjerg. "Differential expression profiling of heat stressed tardigrades reveals major shift in the transcriptome". Comparative Biochemistry and Physiology - Part A: Molecular & Integrative Physiology 267 (2022): https://curis.ku.dk/portal/en/publications/differential-expression-profiling-of-heat-stressed-tardigrades-reveals-major-shift-in-the-transcriptome(e6ac5cd2-5070-4c87-b047-f9cb8cfcc4df).html.
    10.1016/j.cbpa.2022.111169
  57. Beatrice Demarchi; Josefin Stiller; Alicia Grealy; Meaghan Mackie; Yuan Deng; M Thomas P Gilbert; Julia Clarke; et al. "Ancient proteins resolve controversy over the identity of Genyornis eggshell". PNAS 119 43 (2022): https://curis.ku.dk/portal/en/publications/ancient-proteins-resolve-controversy-over-the-identity-of-genyornis-eggshell(562fc0a1-e407-4a52-ad24-732d85e8a5ff).html.
    10.1073/pnas.2109326119
  58. Anders Bergström; David W. G. Stanton; Ulrike H. Taron; Laurent Frantz; Mikkel-Holger S. Sinding; Erik Ersmark; Saskia Pfrengle; et al. "Grey wolf genomic history reveals a dual ancestry of dogs". Nature 607 7918 (2022): 313-320. https://curis.ku.dk/portal/en/publications/grey-wolf-genomic-history-reveals-a-dual-ancestry-of-dogs(56acb259-71bf-4a15-8ca4-ec29700175a3).html.
    10.1038/s41586-022-04824-9
  59. Ask Møbjerg; Miyako Kodama; Jazmín Ramos-Madrigal; Ricardo Cardoso Neves; Aslak Jørgensen; Morten Schiøtt; M Thomas P Gilbert; Nadja Møbjerg. "Extreme freeze-tolerance in cryophilic tardigrades relies on controlled ice formation but does not involve significant change in transcription". Comparative Biochemistry and Physiology - Part A: Molecular & Integrative Physiology 271 (2022): https://curis.ku.dk/portal/en/publications/extreme-freezetolerance-in-cryophilic-tardigrades-relies-on-controlled-ice-formation-but-does-not-involve-significant-change-in-transcription(af6380e4-d3f9-4039-97d6-332a5abc35d9).html.
    10.1016/j.cbpa.2022.111245
  60. Adam Koziol; Iñaki Odriozola; Lasse Nyholm; Aoife Leonard; Carlos San Jose; Joana Pauperio; Clara Ferreira; et al. "Enriching captivity conditions with natural elements does not prevent the loss of wild-like gut microbiota but shapes its compositional variation in two small mammals". MicrobiologyOpen 11 5 (2022): https://curis.ku.dk/portal/en/publications/enriching-captivity-conditions-with-natural-elements-does-not-prevent-the-loss-of-wildlike-gut-microbiota-but-shapes-its-compositional-variation-in-two-small-mammals(8bd54553-b599-446b-9adb-0df95d7f107e).html.
    10.1002/mbo3.1318
  61. Matt A. Field; Sonu Yadav; Olga Dudchenko; Meera Esvaran; Benjamin D. Rosen; Ksenia Skvortsova; Richard J. Edwards; et al. "The Australian dingo is an early offshoot of modern breed dogs". Science Advances 8 16 (2022): https://curis.ku.dk/portal/en/publications/the-australian-dingo-is-an-early-offshoot-of-modern-breed-dogs(d7022251-61dd-490f-be60-3a5c053a18f4).html.
    10.1126/sciadv.abm5944
  62. Christina Lynggaard; Alejandro Oceguera-Figueroa; Sebastian Kvist; M Thomas P Gilbert; Kristine Bohmann. "The potential of aquatic bloodfeeding and nonbloodfeeding leeches as a tool for iDNA characterisation". Molecular Ecology Resources 22 2 (2022): 539-553. https://curis.ku.dk/portal/en/publications/the-potential-of-aquatic-bloodfeeding-and-nonbloodfeeding-leeches-as-a-tool-for-idna-characterisation(35c4a1b9-4ca6-419b-a171-ef9385ee2c06).html.
    10.1111/1755-0998.13486
  63. Vanessa C. Bieker; Paul Battlay; Bent Petersen; Xin Sun; Jonathan Wilson; Jaelle C. Brealey; François Bretagnolle; et al. "Uncovering the genomic basis of an extraordinary plant invasion". Science Advances 8 34 (2022): https://curis.ku.dk/portal/en/publications/uncovering-the-genomic-basis-of-an-extraordinary-plant-invasion(ace550fd-44b6-4748-93d3-4224846d6555).html.
    10.1126/sciadv.abo5115
  64. José Cerca; Bent Petersen; José Miguel Lazaro-Guevara; Angel Rivera-Colón; Siri Birkeland; Joel Vizueta; Siyu Li; et al. "The genomic basis of the plant island syndrome in Darwin’s giant daisies". Nature Communications 13 (2022): https://curis.ku.dk/portal/en/publications/the-genomic-basis-of-the-plant-island-syndrome-in-darwins-giant-daisies(dc65f041-f8b7-4375-b1bb-2fc5fdd01abc).html.
    10.1038/s41467-022-31280-w
  65. Núria Tous; Sofia Marcos; Farshad Goodarzi Boroojeni; Ana Pérez de Rozas; Jürgen Zentek; Andone Estonba; Dorthe Sandvang; et al. "Novel strategies to improve chicken performance and welfare by unveiling host-microbiota interactions through hologenomics". Frontiers in Physiology 13 (2022): https://curis.ku.dk/portal/en/publications/novel-strategies-to-improve-chicken-performance-and-welfare-by-unveiling-hostmicrobiota-interactions-through-hologenomics(17088842-461d-4754-8c1c-348512aacb5b).html.
    10.3389/fphys.2022.884925
  66. Giulio Formenti; Kathrin Theissinger; Carlos Fernandes; Iliana Bista; Aureliano Bombarely; Christoph Bleidorn; Claudio Ciofi; et al. "The era of reference genomes in conservation genomics". Trends in Ecology and Evolution 37 3 (2022): 197-202. https://curis.ku.dk/portal/en/publications/the-era-of-reference-genomes-in-conservation-genomics(ecbe7ef3-aa3c-47f7-95da-661c294407ad).html.
    10.1016/j.tree.2021.11.008
  67. Jianqing Lin; David A. Duchêne; Christian Carøe; Oliver Smith; Marta Maria Ciucani; Jonas Niemann; Douglas Richmond; et al. "Probing the genomic limits of de-extinction in the Christmas Island rat". Current Biology 32 7 (2022): 1650-1656.e3. https://curis.ku.dk/portal/en/publications/probing-the-genomic-limits-of-deextinction-in-the-christmas-island-rat(dcd4798b-6fa0-4ba1-85ca-28dbe05ae313).html.
    10.1016/j.cub.2022.02.027
  68. Natalie Iwanycki Ahlstrand; Shyam Gopalakrishnan; Filipe G Vieira; Vanessa C. Bieker; Heidi M. Meudt; Stephanie Dunbar-Co; Carl J. Rothfels; et al. "Travel Tales of a Worldwide Weed". Frontiers in Plant Science 13 (2022): https://curis.ku.dk/portal/en/publications/travel-tales-of-a-worldwide-weed(41d2d4e5-2332-46ec-af9c-c4da7cc95336).html.
    10.3389/fpls.2022.838166
  69. Theresa L. Cole; Chengran Zhou; Miaoquan Fang; Hailin Pan; Daniel T. Ksepka; Steven R. Fiddaman; Christopher A. Emerling; et al. "Genomic insights into the secondary aquatic transition of penguins". Nature Communications 13 (2022): https://curis.ku.dk/portal/en/publications/genomic-insights-into-the-secondary-aquatic-transition-of-penguins(b1bd3aae-8c2b-4d1f-8ba2-a7d376f510d1).html.
    10.1038/s41467-022-31508-9
  70. Mads Lund; Jacob Agerbo Rasmussen; Jazmín Ramos-Madrigal; Ruairidh Sawers; M Thomas P Gilbert; Christopher Barnes. "Rhizosphere bacterial communities differ among traditional maize landraces". Environmental DNA 4 6 (2022): 1241-1249. https://curis.ku.dk/portal/en/publications/rhizosphere-bacterial-communities-differ-among-traditional-maize-landraces(f7da1a17-786f-49b3-ba90-0382e75465ed).html.
    10.1002/edn3.333
  71. Ryan R. Germain; Shaohong Feng; Guangji Chen; Gary R. Graves; Joseph A. Tobias; Carsten Rahbek; Fumin Lei; et al. "Species-specific traits mediate avian demographic responses under past climate change". (2022): https://curis.ku.dk/portal/en/publications/speciesspecific-traits-mediate-avian-demographic-responses-under-past-climate-change(f85dd134-35d4-4c25-8139-27d0ba8ad044).html.
    10.1101/2022.08.16.504093
  72. Shyam Gopalakrishnan; S. Sunna Ebenesersdóttir; Inge Kristine Conrad Lundstrøm; Gordon Turner-Walker; Kristjan H. S. Moore; Pierre Luisi; Ashot Margaryan; et al. "The population genomic legacy of the second plague pandemic". Current Biology 32 21 (2022): 4743-4751.e6. https://curis.ku.dk/portal/en/publications/the-population-genomic-legacy-of-the-second-plague-pandemic(29fe6779-7cdb-49b2-b63e-dbe9b9424e35).html.
    10.1016/j.cub.2022.09.023
  73. Emily L. Cavill; Shyam Gopalakrishnan; Lara Puetz; Ângela M. Ribeiro; Sarah Mak; Rute da Fonseca; George Pacheco; et al. "Conservation genomics of the endangered Seychelles Magpie-Robin (Copsychus sechellarum)". Ibis 164 2 (2022): 396-410. https://curis.ku.dk/portal/en/publications/conservation-genomics-of-the-endangered-seychelles-magpierobin-copsychus-sechellarum(9e59fd89-c22b-4ffa-8f6e-1562af78e4b7).html.
    10.1111/ibi.13023
  74. Vera de Ferran; Henrique Vieira Figueiró; Fernanda de Jesus Trindade; Oliver Smith; Mikkel-Holger S. Sinding; Cristine S. Trinca; Gabriele Zenato Lazzari; et al. "Phylogenomics of the world's otters". Current Biology 32 16 (2022): 3650-3658.e4. https://curis.ku.dk/portal/en/publications/phylogenomics-of-the-worlds-otters(040373f1-97bf-4353-9cfb-8c477a728f5b).html.
    10.1016/j.cub.2022.06.036
  75. Lara C. Puetz; Tom O. Delmont; Ostaizka Aizpurua; Chunxue Guo; Guojie Zhang; Rebecca Katajamaa; Per Jensen; M. Thomas P. Gilbert. "Gut Microbiota Linked with Reduced Fear of Humans in Red Junglefowl Has Implications for Early Domestication". Advanced Genetics (2021): 2100018-2100018. https://doi.org/10.1002/ggn2.202100018.
    10.1002/ggn2.202100018
  76. Mikkel-Holger S. Sinding; Shyam Gopalakrishnan; Katrine Raundrup; Love Dalén; Jonathan Threlfall; Darwin Tree of Life Barcoding collective; Wellcome Sanger Institute Tree of Life programme; et al. "The genome sequence of the grey wolf, Canis lupus Linnaeus 1758 [version 1; peer review: 2 approved]". (2021): https://wellcomeopenresearch.org/articles/6-310/v1.
    10.12688/wellcomeopenres.17332.1
  77. D. Azevedo-Silva; J.A. Rasmussen; M. Carneiro; M.T.P. Gilbert; H. Azevedo. "Feasibility of applying shotgun metagenomic analyses to grapevine leaf, rhizosphere and soil microbiome characterisation". Australian Journal of Grape and Wine Research (2021): https://doi.org/10.1111/ajgw.12508.
    10.1111/ajgw.12508
  78. Niccolò Alfano; Anisha Dayaram; Jan Axtner; Kyriakos Tsangaras; Marie-Louise Kampmann; Azlan Mohamed; Seth T. Wong; et al. "Non-invasive surveys of mammalian viruses using environmental DNA". Methods in Ecology and Evolution (2021): https://doi.org/10.1111/2041-210X.13661.
    10.1111/2041-210X.13661
  79. Rosalía Piñeiro; Olivier J. Hardy; Carolina Tovar; Shyam Gopalakrishnan; Filipe Garrett Vieira; M. Thomas P. Gilbert. "Contrasting genetic signal of recolonization after rainforest fragmentation in African trees with different dispersal abilities". Proceedings of the National Academy of Sciences 118 27 (2021): https://doi.org/10.1073/pnas.2013979118.
    10.1073/pnas.2013979118
  80. Rosie Drinkwater; Tommaso Jucker; Joshua H. T. Potter; Tom Swinfield; David A. Coomes; Eleanor M. Slade; M. Thomas P. Gilbert; et al. "Leech blood-meal invertebrate-derived DNA reveals differences in Bornean mammal diversity across habitats". Molecular Ecology (2021): https://doi.org/10.1111/mec.15724.
    10.1111/mec.15724
  81. Johanna von Seth; Nicolas Dussex; David Díez-del-Molino; Tom van der Valk; Verena E. Kutschera; Marcin Kierczak; Cynthia C. Steiner; et al. "Genomic insights into the conservation status of the world’s last remaining Sumatran rhinoceros populations". Nature Communications (2021): https://doi.org/10.1038/s41467-021-22386-8.
    10.1038/s41467-021-22386-8
  82. Ashot Margaryan; Christina Lehmkuhl Noer; Stine Raith Richter; Marlene Elise Restrup; Julie Lee Bülow-Hansen; Frederik Leerhøi; Emilia Marie Rolander Langkjær; et al. "Mitochondrial genomes of Danish vertebrate species generated for the national DNA reference database, DNAmark". Environmental DNA (2021): https://doi.org/10.1002/edn3.138.
    10.1002/edn3.138
  83. Pedro Andrade; Kelly A. Dyer; Malgorzata A. Gazda; Pedro M. Araújo; Sandra Afonso; Jacob. A. Rasmussen; Cristiana I. Marques; et al. "Molecular parallelisms between pigmentation in the avian iris and the integument of ectothermic vertebrates". PLOS Genetics 17 2 (2021): e1009404-e1009404. https://doi.org/10.1371/journal.pgen.1009404.
    10.1371/journal.pgen.1009404
  84. Amy Bogaard; Robin Allaby; Benjamin S. Arbuckle; Robin Bendrey; Sarah Crowley; Thomas Cucchi; Tim Denham; et al. "Reconsidering domestication from a process archaeology perspective". World Archaeology (2021): 1-22. https://doi.org/10.1080/00438243.2021.1954990.
    10.1080/00438243.2021.1954990
  85. Jacob Agerbo Rasmussen; Martin Nielsen; Sarah S. T. Mak; Johanna Döring; Franziska Klincke; Shyam Gopalakrishnan; Robert R. Dunn; Randolf Kauer; Marcus Thomas Pius Gilbert. "eDNA-based biomonitoring at an experimental German vineyard to characterize how management regimes shape ecosystem diversity". Environmental DNA (2021): https://doi.org/10.1002/edn3.131.
    10.1002/edn3.131
  86. Michael V Westbury; Ross Barnett; Marcela Sandoval-Velasco; Graham Gower; Filipe G Vieira; Marc de Manuel; Anders Johannes Hansen; et al. "A genomic exploration of the early evolution of extant cats and their sabre-toothed relatives". Open Research Europe 1 (2021): https://curis.ku.dk/portal/en/publications/a-genomic-exploration-of-the-early-evolution-of-extant-cats-and-their-sabretoothed-relatives(a2318f3e-8fa7-4ac3-96c9-8ef49d575665).html.
    10.12688/openreseurope.13104.1
  87. Arang Rhie; Shane A. McCarthy; Olivier Fedrigo; Joana Damas; Giulio Formenti; Sergey Koren; Marcela Uliano-Silva; et al. "Towards complete and error-free genome assemblies of all vertebrate species". Nature 592 7856 (2021): 737-746. https://curis.ku.dk/portal/en/publications/towards-complete-and-errorfree-genome-assemblies-of-all-vertebrate-species(029e9e00-3e2a-4679-8a93-8f6a3eccb832).html.
    10.1038/s41586-021-03451-0
  88. Fátima Sánchez Barreiro; Shyam Gopalakrishnan; Jazmín Ramos-Madrigal; Michael V Westbury; Marc de Manuel; Ashot Margaryan; Marta M. Ciucani; et al. "Historical population declines prompted significant genomic erosion in the northern and southern white rhinoceros (Ceratotherium simum)". Molecular Ecology 30 23 (2021): 6355-6369. https://curis.ku.dk/portal/en/publications/historical-population-declines-prompted-significant-genomic-erosion-in-the-northern-and-southern-white-rhinoceros-ceratotherium-simum(fbb6465a-ade6-48ea-b652-8be1d5cc1e3b).html.
    10.1111/mec.16043
  89. Michael V Westbury; Ross Barnett; Marcela Sandoval-Velasco; Graham Gower; Filipe G Vieira; Marc de Manuel; Anders Johannes Hansen; et al. "A genomic exploration of the early evolution of extant cats and their sabre-toothed relatives". Open Research Europe 1 (2021): https://curis.ku.dk/portal/en/publications/a-genomic-exploration-of-the-early-evolution-of-extant-cats-and-their-sabretoothed-relatives(7efb0a5c-86f4-4886-8b5b-b3a1b65afef5).html.
    10.12688/openreseurope.13104.2
  90. Bastian Fromm; Marcel Tarbier; Oliver Smith; Emilio Marmol-Sanchez; Love Dalen; M Thomas P Gilbert; Marc R. Friedlander. "Ancient microRNA profiles of 14,300-yr-old canid samples confirm taxonomic origin and provide glimpses into tissue-specific gene regulation from the Pleistocene". RNA 27 3 (2021): 324-334. https://curis.ku.dk/portal/en/publications/ancient-microrna-profiles-of-14300yrold-canid-samples-confirm-taxonomic-origin-and-provide-glimpses-into-tissuespecific-gene-regulation-from-the-pleistocene(5a8d53ff-eb79-4f70-827f-e31e5eea5792).html.
    10.1261/rna.078410.120
  91. Cátia Lúcio Pereira; M Thomas P Gilbert; Miguel Bastos Araújo; Miguel Graça Matias. "Fine-tuning biodiversity assessments". Methods in Ecology and Evolution 12 12 (2021): 2397-2409. https://curis.ku.dk/portal/en/publications/finetuning-biodiversity-assessments(0724d520-ceba-4a39-a39c-9d44f9048615).html.
    10.1111/2041-210X.13718
  92. Andrew D. Foote; Rebecca Hooper; Alana Alexander; Robin W. Baird; Charles Scott Baker; Lisa Ballance; Jay Barlow; et al. "Runs of homozygosity in killer whale genomes provide a global record of demographic histories". Molecular Ecology 30 23 (2021): 6162-6177. https://curis.ku.dk/portal/en/publications/runs-of-homozygosity-in-killer-whale-genomes-provide-a-global-record-of-demographic-histories(249be6ee-dbe9-4885-8cc7-72fc016055a5).html.
    10.1111/mec.16137
  93. Ann Sofie Olesen; Miyako Kodama; Louise Lohse; Francesc Accensi; Thomas Bruun Rasmussen; Christina M. Lazov; Morten T. Limborg; et al. "Identification of African swine fever virus transcription within peripheral blood mononuclear cells of acutely infected pigs". Viruses 13 11 (2021): https://curis.ku.dk/portal/en/publications/identification-of-african-swine-fever-virus-transcription-within-peripheral-blood-mononuclear-cells-of-acutely-infected-pigs(8f8f0bae-77f1-44e1-85c7-f11eca47dab4).html.
    10.3390/v13112333
  94. Mikkel-Holger S. Sinding; Marta M. Ciucani; Jazmín Ramos-Madrigal; Alberto Carmagnini; Jacob Agerbo Rasmussen; Shaohong Feng; Guangji Chen; et al. "Kouprey (Bos sauveli) genomes unveil polytomic origin of wild Asian Bos". iScience 24 11 (2021): https://curis.ku.dk/portal/en/publications/kouprey-bos-sauveli-genomes-unveil-polytomic-origin-of-wild-asian-bos(b65173c8-031a-4e94-9259-d3e71a2c00cd).html.
    10.1016/j.isci.2021.103226
  95. Claudia Fontsere; Peter Frandsen; Jessica Hernandez-Rodriguez; Jonas Niemann; Camilla Hjorth Scharff-Olsen; Dominique Vallet; Pascaline Le Gouar; et al. "The genetic impact of an Ebola outbreak on a wild gorilla population". BMC Genomics 22 (2021): https://curis.ku.dk/portal/en/publications/the-genetic-impact-of-an-ebola-outbreak-on-a-wild-gorilla-population(8f7e0592-fc30-4901-b9ad-d4b4e406349d).html.
    10.1186/s12864-021-08025-y
  96. Shanlin Liu; Michael V Westbury; Nicolas Dussex; Kieren J. Mitchell; Mikkel-Holger S. Sinding; Peter D. Heintzman; David A. Duchêne; et al. "Ancient and modern genomes unravel the evolutionary history of the rhinoceros family". Cell 184 19 (2021): 4874-4885.e16. https://curis.ku.dk/portal/en/publications/ancient-and-modern-genomes-unravel-the-evolutionary-history-of-the-rhinoceros-family(f0add686-d63b-4386-b456-1c81a9e21f01).html.
    10.1016/j.cell.2021.07.032
  97. Lucie A. Bergeron; Søren Besenbacher; Jaco Bakker; Jiao Zheng; Panyi Li; George Pacheco; Mikkel-Holger S. Sinding; et al. "The germline mutational process in rhesus macaque and its implications for phylogenetic dating". GigaScience 10 5 (2021): https://curis.ku.dk/portal/en/publications/the-germline-mutational-process-in-rhesus-macaque-and-its-implications-for-phylogenetic-dating(9619e682-086c-4566-b7fb-1210742da7b9).html.
    10.1093/gigascience/giab029
  98. Chang Liu; Jianbo Gao; Xinxin Cui; Zhipeng Li; Lei Chen; Yuan Yuan; Yaolei Zhang; et al. "A towering genome". Science Advances 7 12 (2021): https://curis.ku.dk/portal/en/publications/a-towering-genome(a478fd5c-ab3c-42e2-bc98-5a708712b862).html.
    10.1126/sciadv.abe9459
  99. Jacob Agerbo Rasmussen; Kasper; David A. Duchêne; Lara Puetz; Tom O. Delmont; Harald Sveier; Louise von Gersdorff Jørgensen; et al. "Genome-resolved metagenomics suggests a mutualistic relationship between Mycoplasma and salmonid hosts". Communications Biology 4 (2021): https://curis.ku.dk/portal/en/publications/genomeresolved-metagenomics-suggests-a-mutualistic-relationship-between-mycoplasma-and-salmonid-hosts(9bc74391-8154-47fd-a209-4d3db7522657).html.
    10.1038/s42003-021-02105-1
  100. Ostaizka Aizpurua; Lasse Nyholm; Evie Morris; Gloriana Chaverri; L. Gerardo Herrera Montalvo; Jose Juan Flores-Martinez; Aiqing Lin; et al. "The role of the gut microbiota in the dietary niche expansion of fishing bats". BMC Animal Microbiome 3 (2021): https://curis.ku.dk/portal/en/publications/the-role-of-the-gut-microbiota-in-the-dietary-niche-expansion-of-fishing-bats(37107ed3-7cd0-4546-9c76-038d833573f3).html.
    10.1186/s42523-021-00137-w
  101. Kimmo Sirén; Andrew Millard; Bent Petersen; M Thomas P Gilbert; Martha R. J. Clokie; Thomas Sicheritz-Ponten. "Rapid discovery of novel prophages using biological feature engineering and machine learning". NAR Genomics and Bioinformatics 3 1 (2021): https://curis.ku.dk/portal/en/publications/rapid-discovery-of-novel-prophages-using-biological-feature-engineering-and-machine-learning(0567e549-108a-4d18-ba41-bcf402ba3776).html.
    10.1093/nargab/lqaa109
  102. Tatiana R. Feuerborn; Alberto Carmagnini; Robert J. Losey; Tatiana Nomokonova; Arthur Askeyev; Igor Askeyev; Oleg Askeyev; et al. "Modern Siberian dog ancestry was shaped by several thousand years of Eurasian-wide trade and human dispersal". Proceedings of the National Academy of Sciences of the United States of America 118 39 (2021): https://curis.ku.dk/portal/en/publications/modern-siberian-dog-ancestry-was-shaped-by-several-thousand-years-of-eurasianwide-trade-and-human-dispersal(3619d889-acb8-450a-aa8d-a8e760f91f96).html.
    10.1073/pnas.2100338118
  103. Marta Maria Ciucani; Julie Kragmose Jensen; Mikkel-Holger S. Sinding; Oliver Smith; Saverio Bartolini Lucenti; Erika Rosengren; Lorenzo Rook; et al. "Evolutionary history of the extinct Sardinian dhole". Current Biology 31 24 (2021): 5571-5579.e6. https://curis.ku.dk/portal/en/publications/evolutionary-history-of-the-extinct-sardinian-dhole(3caba6e4-012e-416b-a467-6c38fd7bea03).html.
    10.1016/j.cub.2021.09.059
  104. Jonas Niemann; Shyam Gopalakrishnan; Nobuyuki Yamaguchi; Jazmín Ramos-Madrigal; Nathan Wales; M Thomas P Gilbert; Mikkel-Holger S. Sinding. "Extended survival of Pleistocene Siberian wolves into the early 20th century on the island of Honshu". iScience 24 (2021): https://curis.ku.dk/portal/en/publications/extended-survival-of-pleistocene-siberian-wolves-into-the-early-20th-century-on-the-island-of-honshu(7d7f1b41-70bb-4200-9be4-60413b8eac49).html.
    10.1016/j.isci.2020.101904
  105. Davide Bozzi; Jacob Agerbo Rasmussen; Christian Carøe; Harald Sveier; Kristian Nordøy; M Thomas P Gilbert; Morten T. Limborg. "Salmon gut microbiota correlates with disease infection status". BMC Animal Microbiome 3 1 (2021): https://curis.ku.dk/portal/en/publications/salmon-gut-microbiota-correlates-with-disease-infection-status(18fa85fb-dfd3-454f-ab8a-d9b6fac8d3c2).html.
    10.1186/s42523-021-00096-2
  106. Angela R. Perri; Kieren J. Mitchell; Alice Mouton; Sandra Alvarez-Carretero; Ardern Hulme-Beaman; James Haile; Alexandra Jamieson; et al. "Dire wolves were the last of an ancient New World canid lineage". Nature 591 (2021): 87-91. https://curis.ku.dk/portal/en/publications/dire-wolves-were-the-last-of-an-ancient-new-world-canid-lineage(b3dbbb54-63e4-4e2e-9e0b-a21a6437cd24).html.
    10.1038/s41586-020-03082-x
  107. Melanie Kirch; Anders Romundset; M Thomas P Gilbert; Felicity C. Jones; Andrew D. Foote. "Ancient and modern stickleback genomes reveal the demographic constraints on adaptation". Current Biology 31 9 (2021): 2027-2036.e8. https://curis.ku.dk/portal/en/publications/ancient-and-modern-stickleback-genomes-reveal-the-demographic-constraints-on-adaptation(7ae270d3-e22c-4ac2-bebd-4b0a25d78773).html.
    10.1016/j.cub.2021.02.027
  108. Angelo Poliseno; Alvaro Altuna; Lara Puetz; Sarah Mak; Pilar Rios; Emily Petroni; Catherine S. McFadden; Martin Sørensen; M Thomas P Gilbert. "An integrated morphological-molecular approach reveals new insights on the systematics of the octocoral Telestula humilis (Thomson, 1927) (Octocorallia". Invertebrate Systematics 35 3 (2021): 261-281. https://curis.ku.dk/portal/en/publications/an-integrated-morphologicalmolecular-approach-reveals-new-insights-on-the-systematics-of-the-octocoral-telestula-humilis-thomson-1927-octocorallia(4a4b5868-11d1-4d20-b8c0-d33f55f746bb).html.
    10.1071/IS20009
  109. Filipe Garrett Vieira; José Alfredo Samaniego Castruita; M. Thomas P. Gilbert. "Using in silico predicted ancestral genomes to improve the efficiency of paleogenome reconstruction". Ecology and Evolution (2020): https://doi.org/10.1002/ece3.6925.
    10.1002/ece3.6925
  110. Brooke L Whitelaw; Ira R Cooke; Julian Finn; Rute R da Fonseca; Elena A Ritschard; M T P Gilbert; Oleg Simakov; Jan M Strugnell. "Adaptive venom evolution and toxicity in octopods is driven by extensive novel gene formation, expansion, and loss". GigaScience (2020): https://doi.org/10.1093/gigascience/giaa120.
    10.1093/gigascience/giaa120
  111. Damien A. Fordham; Stephen T. Jackson; Stuart C. Brown; Brian Huntley; Barry W. Brook; Dorthe Dahl-Jensen; M. Thomas P. Gilbert; et al. "Using paleo-archives to safeguard biodiversity under climate change". Science (2020): https://doi.org/10.1126/science.abc5654.
    10.1126/science.abc5654
  112. Puteri Nur Syahzanani Jahari; Shahfiz Mohd Azman; Kaviarasu Munian; Nor Hazwani Ahmad Ruzman; Mohd Shahir Shamsir; Stine R. Richter; M. Thomas P. Gilbert; Faezah Mohd Salleh. "Molecular identification and phylogenetic analysis of a Callosciurus notatus complete mitogenome from Peninsular Malaysia". Mitochondrial DNA Part B 5 3 (2020): 3004-3006. https://doi.org/10.1080/23802359.2020.1797583.
    10.1080/23802359.2020.1797583
  113. Kristine Bohmann; Siavash Mirarab; Vineet Bafna; M. Thomas P. Gilbert. "Beyond DNA barcoding: The unrealized potential of genome skim data in sample identification". Molecular Ecology (2020): https://doi.org/10.1111/mec.15507.
    10.1111/mec.15507
  114. Patrick Denis Browne; Tue Kjærgaard Nielsen; Witold Kot; Anni Aggerholm; M Thomas P Gilbert; Lara Puetz; Morten Rasmussen; Athanasios Zervas; Lars Hestbjerg Hansen. "GC bias affects genomic and metagenomic reconstructions, underrepresenting GC-poor organisms". GigaScience (2020): https://doi.org/10.1093/gigascience/giaa008.
    10.1093/gigascience/giaa008
  115. George Pacheco; Hein van Grouw; Michael D. Shapiro; M Thomas P Gilbert; Filipe G Vieira. "Darwin's Fancy Revised: An Updated Understanding of the Genomic Constitution of Pigeon Breeds". Genome Biology and Evolution 12 3 (2020): 136-150. https://curis.ku.dk/portal/en/publications/darwins-fancy-revised-an-updated-understanding-of-the-genomic-constitution-of-pigeon-breeds(3476e7d1-e3f5-4333-879a-ecb6f6dddbb9).html.
    10.1093/gbe/evaa027
  116. Shaohong Feng; Josefin Stiller; Yuan Deng; Joel Armstrong; Qi Fang; Andrew Hart Reeve; Duo Xie; et al. "Dense sampling of bird diversity increases power of comparative genomics". Nature 587 7833 (2020): 252-257. https://curis.ku.dk/portal/en/publications/dense-sampling-of-bird-diversity-increases-power-of-comparative-genomics(ab1eb48d-4349-4a0b-93a6-337836a725e0).html.
    10.1038/s41586-020-2873-9
  117. Liisa Loog; Olaf Thalmann; Mikkel-Holger S. Sinding; Verena J. Schuenemann; Angela Perri; Mietje Germonpré; Hervé Bocherens; et al. "Ancient DNA suggests modern wolves trace their origin to a Late Pleistocene expansion from Beringia". Molecular Ecology 29 9 (2020): 1596-1610. https://curis.ku.dk/portal/en/publications/ancient-dna-suggests-modern-wolves-trace-their-origin-to-a-late-pleistocene-expansion-from-beringia(d81cbae9-6e82-45f0-b6ce-ea49adcd3373).html.
    10.1111/mec.15329
  118. Christina Lynggaard; Douglas W. Yu; Guilherme Oliveira; Cecilio F. Caldeira; Silvio J. Ramos; Martin R. Ellegaard; M Thomas P Gilbert; Markus Gastauer; Kristine Bohmann. "DNA-Based Arthropod Diversity Assessment in Amazonian Iron Mine Lands Show Ecological Succession Towards Undisturbed Reference Sites". Frontiers in Ecology and Evolution 8 (2020): https://curis.ku.dk/portal/en/publications/dnabased-arthropod-diversity-assessment-in-amazonian-iron-mine-lands-show-ecological-succession-towards-undisturbed-reference-sites(bf5a5765-d4c1-49ac-8ad4-9b52026aff39).html.
    10.3389/fevo.2020.590976
  119. Laurent Bouby; Nathan Wales; Mindia Jalabadze; Nana Rusishvili; Vincent Bonhomme; Jazmín Ramos-Madrigal; Allowen Evin; et al. "Tracking the history of grapevine cultivation in Georgia by combining geometric morphometrics and ancient DNA". Vegetation History and Archaeobotany 30 (2020): 63-76. https://curis.ku.dk/portal/en/publications/tracking-the-history-of-grapevine-cultivation-in-georgia-by-combining-geometric-morphometrics-and-ancient-dna(efb51584-7fd7-4674-adfe-f1c0ef5fae68).html.
    10.1007/s00334-020-00803-0
  120. Ashot Margaryan; Mikkel-Holger S. Sinding; L. I.U. Shanlin; Filipe G Vieira; Yvonne L. Chan; Senthilvel K.S.S. Nathan; Yoshan Moodley; Michael W. Bruford; M Thomas P Gilbert. "Recent mitochondrial lineage extinction in the critically endangered Javan rhinoceros". Zoological Journal of the Linnean Society 190 1 (2020): 372-383. https://curis.ku.dk/portal/en/publications/recent-mitochondrial-lineage-extinction-in-the-critically-endangered-javan-rhinoceros(c629373d-c95a-460b-b0be-14e41fea5216).html.
    10.1093/zoolinnean/zlaa004
  121. Marcela Sandoval-Velasco; Juan Antonio Rodríguez; Cynthia Perez Estrada; Guojie Zhang; Erez Lieberman Aiden; Marc A. Marti-Renom; M Thomas P Gilbert; Oliver Smith. "Hi-C chromosome conformation capture sequencing of avian genomes using the BGISEQ-500 platform". GigaScience 9 8 (2020): https://curis.ku.dk/portal/en/publications/hic-chromosome-conformation-capture-sequencing-of-avian-genomes-using-the-bgiseq500-platform(ccde2a65-2c2d-42da-9803-2d250c698e4f).html.
    10.1093/gigascience/giaa087
  122. Edana Lord; Nicolas Dussex; Marcin Kierczak; David Díez-del-Molino; Oliver A. Ryder; David W. G. Stanton; M Thomas P Gilbert; et al. "Pre-extinction Demographic Stability and Genomic Signatures of Adaptation in the Woolly Rhinoceros". Current Biology 30 19 (2020): 3871--3879, e1--e7-3871--3879, e1--e7. https://curis.ku.dk/portal/en/publications/preextinction-demographic-stability-and-genomic-signatures-of-adaptation-in-the-woolly-rhinoceros(6ce2f29b-f0d4-4a55-b317-baec8d158e88).html.
    10.1016/j.cub.2020.07.046
  123. Antton Alberdi; Orly Razgour; Ostaizka Aizpurua; Roberto Novella-Fernandez; Joxerra Aihartza; Ivana Budinski; Inazio Garin; et al. "DNA metabarcoding and spatial modelling link diet diversification with distribution homogeneity in European bats". Nature Communications 11 (2020): https://curis.ku.dk/portal/en/publications/dna-metabarcoding-and-spatial-modelling-link-diet-diversification-with-distribution-homogeneity-in-european-bats(6a944c0d-cb2e-4c16-91f8-740333dd7046).html.
    10.1038/s41467-020-14961-2
  124. Jazmín Ramos-Madrigal; Mikkel-Holger S Sinding; Christian Carøe; Sarah Mak; Jonas Niemann; José Alfredo Samaniego Castruita; Sergey Fedorov; et al. "Genomes of Pleistocene Siberian Wolves Uncover Multiple Extinct Wolf Lineages". Current biology : CB 31 (2020): 198-206. https://curis.ku.dk/portal/en/publications/genomes-of-pleistocene-siberian-wolves-uncover-multiple-extinct-wolf-lineages(bd1d1986-2969-4357-9e97-fa190c7b83f7).html.
    10.1016/j.cub.2020.10.002
  125. Rute da Fonseca; Alvarina Couto; Andre M. Machado; Brona Brejova; Carolin B. Albertin; Filipe Silva; Paul Gardner; et al. "A draft genome sequence of the elusive giant squid, Architeuthis dux". GigaScience 9 1 (2020): https://curis.ku.dk/portal/en/publications/a-draft-genome-sequence-of-the-elusive-giant-squid-architeuthis-dux(00055b06-a920-424b-abbc-4f81dc69e67d).html.
    10.1093/gigascience/giz152
  126. Ross Barnett; Michael V Westbury; Marcela Sandoval-Velasco; Filipe G Vieira; Sungwon Jeon; Grant Zazula; Michael D. Martin; et al. "Genomic Adaptations and Evolutionary History of the Extinct Scimitar-Toothed Cat, Homotherium latidens". Current Biology 30 (2020): 5018-5025. https://curis.ku.dk/portal/en/publications/genomic-adaptations-and-evolutionary-history-of-the-extinct-scimitartoothed-cat-homotherium-latidens(68e3bc2d-29b8-47d5-982f-a2550203ad9c).html.
    10.1016/j.cub.2020.09.051
  127. Mikkel-Holger S. Sinding; Shyam Gopalakrishnan; Jazmín Ramos-Madrigal; Marc de Manuel; Vladimir V. Pitulko; Lukas Kuderna; Tatiana R. Feuerborn; et al. "Arctic-adapted dogs emerged at the Pleistocene-Holocene transition". Science (New York, N.Y.) 368 6498 (2020): 1495-1499. https://curis.ku.dk/portal/en/publications/arcticadapted-dogs-emerged-at-the-pleistoceneholocene-transition(8186336c-7b2f-4f76-bfb9-14630e6c34b5).html.
    10.1126/science.aaz8599
  128. Marc de Manuel; Ross Barnett; Marcela Sandoval-Velasco; Nobuyuki Yamaguchi; Filipe G Vieira; M. Lisandra Zepeda Mendoza; Shiping Liu; et al. "The evolutionary history of extinct and living lions". Proceedings of the National Academy of Sciences of the United States of America 117 20 (2020): 10927-10934. https://curis.ku.dk/portal/en/publications/the-evolutionary-history-of-extinct-and-living-lions(f95a8fa8-707b-4345-bcc5-ade5ae7afc31).html.
    10.1073/pnas.1919423117
  129. Pere Gelabert; Marcela Sandoval-Velasco; Aitor Serres; Marc de Manuel; Pere Renom; Ashot Margaryan; Josefin Stiller; et al. "Evolutionary History, Genomic Adaptation to Toxic Diet, and Extinction of the Carolina Parakeet". Current Biology 30 1 (2020): 108--114, e1--e5-108--114, e1--e5. https://curis.ku.dk/portal/en/publications/evolutionary-history-genomic-adaptation-to-toxic-diet-and-extinction-of-the-carolina-parakeet(3229ab3a-3294-4a4c-ac95-2e0e0c830295).html.
    10.1016/j.cub.2019.10.066
  130. Anne Marie Høier Eriksen; Lara Puetz; Carolina Rocha; Tue Nielsen; Lars Hestbjerg Hansen; M Thomas P Gilbert. "Releasing the microbes from old bones". STAR: Science & Technology of Archaeological Research 6 1 (2020): 1-15. https://curis.ku.dk/portal/en/publications/releasing-the-microbes-from-old-bones(86483938-a44e-4014-b4fb-f3d3b56c91a0).html.
    10.1080/20548923.2020.1738115
  131. Puteri Nur Syahzanani Jahari; Nur Fatihah Abdul Malik; Mohd Shahir Shamsir; M Thomas P Gilbert; Faezah Mohd Salleh. "The first complete mitochondrial genome data of Hippocampus kuda originating from Malaysia". Data in Brief 31 (2020): https://curis.ku.dk/portal/en/publications/the-first-complete-mitochondrial-genome-data-of-hippocampus-kuda-originating-from-malaysia(1abba42f-06cf-440e-8a71-2e8dd7f7c6f5).html.
    10.1016/j.dib.2020.105721
  132. Evon R. Hekkala; Matthew L. Aardema; Apurva Narechania; George Amato; Salima Ikram; Matthew H. Shirley; Kent A. Vliet; et al. "The secrets of Sobek - A crocodile mummy mitogenome from ancient Egypt". Journal of Archaeological Science: Reports 33 (2020): 1-10. https://curis.ku.dk/portal/en/publications/the-secrets-of-sobek--a-crocodile-mummy-mitogenome-from-ancient-egypt(2bd2630b-7e65-4cd9-87a3-ef02a0cc7fd6).html.
    10.1016/j.jasrep.2020.102483
  133. Zachary J Nolen; Burcin Yildirim; Iker Irisarri; Shanlin Liu; Clara Groot Crego; Daniel Buchvaldt Amby; Frieder Mayer; M Thomas P Gilbert; Ricardo J Pereira. "Historical isolation facilitates species radiation by sexual selection". Molecular Ecology 29 24 (2020): 4985-5002. https://curis.ku.dk/portal/en/publications/historical-isolation-facilitates-species-radiation-by-sexual-selection(d961f25b-d625-48bc-b0f1-cce5360a68f9).html.
    10.1111/mec.15695
  134. Ashot Margaryan; Daniel J Lawson; Martin Sikora; Fernando Racimo; Simon Rasmussen; Ida Moltke; Lara M Cassidy; et al. "Population genomics of the Viking world". Nature 585 7825 (2020): 390-396. https://curis.ku.dk/portal/en/publications/population-genomics-of-the-viking-world(086ea951-1ff7-4440-8203-9f99493d1404).html.
    10.1038/s41586-020-2688-8
  135. Anne Marie Høier Eriksen; Tue Nielsen; Henning Matthiesen; Christian Carøe; Lars Hestbjerg Hansen; David John Gregory; Gordon Turner-Walker; Matthew Collins; M Thomas P Gilbert. "Bone biodeterioration - The effect of marine and terrestrial depositional environments on early diagenesis and bone bacterial community". PLoS ONE 15 10 October (2020): https://curis.ku.dk/portal/en/publications/bone-biodeterioration--the-effect-of-marine-and-terrestrial-depositional-environments-on-early-diagenesis-and-bone-bacterial-community(15ce0dda-fd9f-476c-8499-47d50252a4a0).html.
    10.1371/journal.pone.0240512
  136. Nerivania Nunes Godeiro; George Pacheco; Shanlin Liu; Nikolas Gioia Cipola; Waldir Miron Berbel-Filho; Feng Zhang; M Thomas P Gilbert; Bruno Cavalcante Bellini. "Phylogeny of Neotropical Seirinae (Collembola, Entomobryidae) based on mitochondrial genomes". Zoologica Scripta 49 3 (2020): 329-339. https://curis.ku.dk/portal/en/publications/phylogeny-of-neotropical-seirinae-collembola-entomobryidae-based-on-mitochondrial-genomes(eee89001-1d83-4add-9aa8-094edf7248a1).html.
    10.1111/zsc.12408
  137. Lucy van Dorp; Pere Gelabert; Adrien Rieux; Marc de Manuel; Toni de-Dios; Shyam Gopalakrishnan; Christian Caroe; et al. "Plasmodium vivax Malaria Viewed through the Lens of an Eradicated European Strain". MOLECULAR BIOLOGY AND EVOLUTION 37 3 (2020): 773-785. https://curis.ku.dk/portal/en/publications/plasmodium-vivax-malaria-viewed-through-the-lens-of-an-eradicated-european-strain(715f9410-d509-486e-b416-667b4e718247).html.
    10.1093/molbev/msz264
  138. Anna Fotakis; Sean D. Denham; Meaghan Mackie; Miren Iraeta Orbegozo; Dorothea Mylopotamitaki; Shyam Gopalakrishnan; Thomas Sicheritz-Ponten; et al. "Multi-omic detection of Mycobacterium leprae in archaeological human dental calculus". Philosophical Transactions of the Royal Society B: Biological Sciences 375 1812 (2020): https://curis.ku.dk/portal/en/publications/multiomic-detection-of-mycobacterium-leprae-in-archaeological-human-dental-calculus(d66c8ed2-d090-469e-9300-009996b1a971).html.
    10.1098/rstb.2019.0584
  139. Henrik Devitt Møller; Jazmín Ramos-Madrigal; Inigo Prada-Luengo; M Thomas P Gilbert; Birgitte Regenberg. "Near-Random Distribution of Chromosome-Derived Circular DNA in the Condensed Genome of Pigeons and the Larger, More Repeat-Rich Human Genome". Genome Biology and Evolution 12 2 (2020): 3762-3777. https://curis.ku.dk/portal/en/publications/nearrandom-distribution-of-chromosomederived-circular-dna-in-the-condensed-genome-of-pigeons-and-the-larger-more-repeatrich-human-genome(96967563-1971-41b2-bfaf-62452b1975c9).html.
    10.1093/gbe/evz281
  140. Rhys Jones; Marcela Sandoval Velasco; Llinos G. Harris; Sue Morgan; Mark Temple; Michael C. Ruddy; Rhian Williams; et al. "Resolving a clinical tuberculosis outbreak using palaeogenomic genome reconstruction methodologies". Tuberculosis 119 (2019): https://curis.ku.dk/portal/en/publications/resolving-a-clinical-tuberculosis-outbreak-using-palaeogenomic-genome-reconstruction-methodologies(53b82241-92a0-4962-8ead-76865d9295ce).html.
    10.1016/j.tube.2019.101865
  141. Rudy C. Nunes; Nerivânia N. Godeiro; George Pacheco; Shanlin Liu; Marcus Thomas P. Gilbert; Fernando Alvarez-Valin; Feng Zhang; Bruno C. Bellini. "The discovery of Neotropical Lepidosira (Collembola, Entomobryidae) and its systematic position". Zoologica Scripta (2019): https://doi.org/10.1111/zsc.12377.
    10.1111/zsc.12377
  142. Oliver Smith; Chris Tyler-Smith; Glenn Dunshea; Mikkel-Holger S. Sinding; Sergey Fedorov; Mietje Germonpre; Hervé Bocherens; M. T. P. Gilbert. "Ancient RNA from Late Pleistocene permafrost and historical canids shows tissue-specific transcriptome survival". PLOS Biology (2019): https://doi.org/10.1371/journal.pbio.3000166.
    10.1371/journal.pbio.3000166
  143. Martin Nielsen; M. Thomas P. Gilbert; Thomas Pape; Kristine Bohmann. "A simplified DNA extraction protocol for unsorted bulk arthropod samples that maintains exoskeletal integrity". Environmental DNA (2019): https://doi.org/10.1002/edn3.16.
    10.1002/edn3.16
  144. Toni de-Dios; Lucy van Dorp; Pere Gelabert; Christian Carøe; Marcela Sandoval Velasco; Rosa Fregel; Raül Escosa; et al. "Genetic affinities of an eradicated European Plasmodium falciparum strain". Microbial Genomics 5 9 (2019): https://curis.ku.dk/portal/en/publications/genetic-affinities-of-an-eradicated-european-plasmodium-falciparum-strain(a7d4ec06-b885-4b46-acda-ee663ace4d34).html.
    10.1099/mgen.0.000289
  145. Zeshan Lin; Lei Chen; Xianqing Chen; Yingbin Zhong; Yue Yang; Wenhao Xia; Chang Liu; et al. "Biological adaptations in the Arctic cervid, the reindeer (Rangifer tarandus)". Science 364 6446 (2019): 1154-+. https://curis.ku.dk/portal/en/publications/biological-adaptations-in-the-arctic-cervid-the-reindeer-rangifer-tarandus(3fc67bd4-1e59-40f9-bbfa-4c2f0586a712).html.
    10.1126/science.aav6312
  146. Carly Ameen; Tatiana R Feuerborn; Sarah K Brown; Anna Linderholm; Ardern Hulme-Beaman; Ophélie Lebrasseur; Mikkel-Holger S. Sinding; et al. "Specialized sledge dogs accompanied Inuit dispersal across the North American Arctic". Proceedings. Biological sciences 286 1916 (2019): 20191929-20191929. https://curis.ku.dk/portal/en/publications/specialized-sledge-dogs-accompanied-inuit-dispersal-across-the-north-american-arctic(17e28f5c-08f9-448a-8fcf-b882d9e5cb9e).html.
    10.1098/rspb.2019.1929
  147. Hailin Pan; Theresa L. Cole; Xupeng Bi; Miaoquan Fang; Chengran Zhou; Zhengtao Yang; Daniel T. Ksepka; et al. "High-coverage genomes to elucidate the evolution of penguins". GigaScience 8 9 (2019): 1-17. https://curis.ku.dk/portal/en/publications/highcoverage-genomes-to-elucidate-the-evolution-of-penguins(beb5fbb5-ce52-4739-b288-8c24a52c236d).html.
    10.1093/gigascience/giz117
  148. Enrico Cappellini; Frido Welker; Luca Pandolfi; Jazmín Ramos-Madrigal; Diana Samodova; Patrick Leopold Rüther; Anna Fotakis; et al. "Early Pleistocene enamel proteome from Dmanisi resolves Stephanorhinus phylogeny". Nature 574 7776 (2019): 103-107. https://curis.ku.dk/portal/en/publications/early-pleistocene-enamel-proteome-from-dmanisi-resolves-stephanorhinus-phylogeny(39855a59-09b3-47be-92ab-0db41d3c1196).html.
    10.1038/s41586-019-1555-y
  149. Imran Khan; Emanuel Maldonado; Liliana Silva; Daniela Almeida; Warren E. Johnson; Stephen J. O'Brien; Guojie Zhang; et al. "The Vertebrate TLR Supergene Family Evolved Dynamically by Gene Gain/Loss and Positive Selection Revealing a Host-Pathogen Arms Race in Birds". Diversity 11 8 (2019): https://curis.ku.dk/portal/en/publications/the-vertebrate-tlr-supergene-family-evolved-dynamically-by-gene-gainloss-and-positive-selection-revealing-a-hostpathogen-arms-race-in-birds(3a4ea21d-eb41-4b7b-abf1-aecc8396eed7).html.
    10.3390/d11080131
  150. Ângela M. Ribeiro; Ben Smit; M Thomas P Gilbert. "31° South: Dietary niche of an arid-zone endemic passerine". Environmental Engineering 1 2 (2019): 109-118. https://curis.ku.dk/portal/en/publications/31-south-dietary-niche-of-an-aridzone-endemic-passerine(08fa2efc-ab4b-4a29-80bf-327fb7358d28).html.
    10.1002/edn3.13
  151. Jazmín Ramos-Madrigal; Anne Kathrine Runge; Laurent Bouby; Thierry Lacombe; José Alfredo Samaniego Castruita; Anne-Françoise Adam-Blondon; Isabel Figueiral; et al. "Palaeogenomic insights into the origins of French grapevine diversity". Nature Plants 5 6 (2019): 595-603. https://curis.ku.dk/portal/en/publications/palaeogenomic-insights-into-the-origins-of-french-grapevine-diversity(c8ff8679-ffbc-4525-8312-0036db3ae9b5).html.
    10.1038/s41477-019-0437-5
  152. Jessica E. Thomas; Gary R. Carvalho; James Haile; Nicolas J. Rawlence; Michael D. Martin; Simon Y. W. Ho; Arnor P. Sigfusson; et al. "Demographic reconstruction from ancient DNA supports rapid extinction of the great auk". eLife 8 (2019): https://curis.ku.dk/portal/en/publications/demographic-reconstruction-from-ancient-dna-supports-rapid-extinction-of-the-great-auk(4a446f50-1769-472c-b2a5-1e1d0aa6c98c).html.
    10.7554/eLife.47509
  153. Mathis Hildonen; Miyako Kodama; Lara Puetz; M Thomas P Gilbert; Morten T. Limborg. "A comparison of storage methods for gut microbiome studies in teleosts". Journal of Microbiological Methods 160 (2019): 42-48. https://curis.ku.dk/portal/en/publications/a-comparison-of-storage-methods-for-gut-microbiome-studies-in-teleosts(3eaed4e2-1cc8-455f-ac07-674d0d5aa5b2).html.
    10.1016/j.mimet.2019.03.010
  154. "Parallel adaptation of rabbit populations to myxoma virus". Science (New York, N.Y.) (2019): https://doi.org/10.1126/science.aau7285.
    10.1126/science.aau7285
  155. "The Genomic Footprints of the Fall and Recovery of the Crested Ibis". Current biology : CB (2019): http://europepmc.org/articles/PMC6345625.
    10.1016/j.cub.2018.12.008
  156. "Mitogenomic evidence of close relationships between New Zealand's extinct giant raptors and small-sized Australian sister-taxa". Molecular phylogenetics and evolution (2019): https://doi.org/10.1016/j.ympev.2019.01.026.
    10.1016/j.ympev.2019.01.026
  157. Rosalia Pineiro; Olivier J. Hardy; Carolina Tovar; Shyam Gopalakrishnan; Filipe G Vieira; M Thomas P Gilbert. "Contrasting dates of rainforest fragmentation in Africa inferred from trees with different dispersal abilities". bioRxiv (2019): https://curis.ku.dk/portal/en/publications/contrasting-dates-of-rainforest-fragmentation-in-africa-inferred-from-trees-with-different-dispersal-abilities(889e80ee-150c-4c28-bffb-6e23e682de47).html.
    10.1101/811463
  158. "Ancient DNA reveals the timing and persistence of organellar genetic bottlenecks over 3,000 years of sunflower domestication and improvement". Evolutionary applications (2019): http://europepmc.org/articles/PMC6304678.
    10.1111/eva.12594
  159. "Using metabarcoding to compare the suitability of two blood-feeding leech species for sampling mammalian diversity in North Borneo". Molecular ecology resources (2019): https://doi.org/10.1111/1755-0998.12943.
    10.1111/1755-0998.12943
  160. "Host-derived population genomics data provides insights into bacterial and diatom composition of the killer whale skin". Molecular ecology (2019): https://doi.org/10.1111/mec.14860.
    10.1111/mec.14860
  161. Laurent A. F. Frantz; James Haile; Audrey T. Lin; Amelie Scheu; Christina Geoerg; Norbert Benecke; Michelle Alexander; et al. "Ancient pigs reveal a near-complete genomic turnover following their introduction to Europe". Proceedings of the National Academy of Sciences of the United States of America 116 35 (2019): 17231-17238. https://curis.ku.dk/portal/en/publications/ancient-pigs-reveal-a-nearcomplete-genomic-turnover-following-their-introduction-to-europe(cfb1a5c9-4cf9-4ef9-851f-0dfa76e0538a).html.
    10.1073/pnas.1901169116
  162. Kimmo Sirén; Sarah Mak; Chrats Melkonian; Christian Carøe; Jan Hendrik Swiegers; Douwe Molenaar; Ulrich Fischer; M Thomas P Gilbert. "Taxonomic and Functional Characterization of the Microbial Community During Spontaneous in vitro Fermentation of Riesling Must". Frontiers in Microbiology 10 (2019): https://curis.ku.dk/portal/en/publications/taxonomic-and-functional-characterization-of-the-microbial-community-during-spontaneous-in-vitro-fermentation-of-riesling-must(18fce747-cd29-431e-9362-afcf8e468afc).html.
    10.3389/fmicb.2019.00697
  163. Theis Z. T. Jensen; Jonas Niemann; Katrine Højholt Iversen; Anna Fotakis; Shyam Gopalakrishnan; Åshild J. Vågene; Mikkel Winther Pedersen; et al. "A 5700 year-old human genome and oral microbiome from chewed birch pitch". Nature Communications 10 (2019): https://curis.ku.dk/portal/en/publications/a-5700-yearold-human-genome-and-oral-microbiome-from-chewed-birch-pitch(06045404-031d-4c28-8b6a-826db0cf6057).html.
    10.1038/s41467-019-13549-9
  164. Ida Nordang Kieler; Melania Osto; Leoni Hugentobler; Lara Puetz; M Thomas P Gilbert; Torben Hansen; Oluf Pedersen; et al. "Diabetic cats have decreased gut microbial diversity and a lack of butyrate producing bacteria". Scientific Reports 9 (2019): 1-13. https://curis.ku.dk/portal/en/publications/diabetic-cats-have-decreased-gut-microbial-diversity-and-a-lack-of-butyrate-producing-bacteria(be22a0d1-5b55-4c17-9308-578edf6d289d).html.
    10.1038/s41598-019-41195-0
  165. Ângela M. Ribeiro; Lara Puetz; Nicholas B. Pattinson; Love Dalén; Yuan Deng; Guojie Zhang; Rute da Fonseca; Ben Smit; M Thomas P Gilbert. "31º South". Molecular Ecology 28 16 (2019): 3709-3721. https://curis.ku.dk/portal/en/publications/31-south(09dd2b7e-d2ce-4ff8-8b65-31e065a11bd0).html.
    10.1111/mec.15176
  166. Shahab Sarmashghi; Kristine Bohmann; M Thomas P Gilbert; Vineet Bafna; Siavash Mirarab. "Skmer: assembly-free and alignment-free sample identification using genome skims". Genome Biology 20 (2019): https://curis.ku.dk/portal/en/publications/skmer-assemblyfree-and-alignmentfree-sample-identification-using-genome-skims(78c9f1ec-b1cc-4884-8c1e-0d1fc7a1ade1).html.
    10.1186/s13059-019-1632-4
  167. Andrew D. Foote; Michael D. Martin; Marie Louis; George Pacheco; Kelly M Robertson; Mikkel-Holger S Sinding; Ana R Amaral; et al. "Killer whale genomes reveal a complex history of recurrent admixture and vicariance". Molecular Ecology 28 14 (2019): 3427-3444. https://curis.ku.dk/portal/en/publications/killer-whale-genomes-reveal-a-complex-history-of-recurrent-admixture-and-vicariance(757880ff-aac5-479e-8d3d-3165f994ab6d).html.
    10.1111/mec.15099
  168. Milaja Nykänen; Kristin Kaschner; Willy Dabin; Andrew Brownlow; Nicholas J Davison; Rob Deaville; Cristina Garilao; et al. "Postglacial Colonization of Northern Coastal Habitat by Bottlenose Dolphins". The Journal of Heredity 110 6 (2019): 662-674. https://curis.ku.dk/portal/en/publications/postglacial-colonization-of-northern-coastal-habitat-by-bottlenose-dolphins(43bd10ee-d4bd-40b1-8ee9-d8017c706a42).html.
    10.1093/jhered/esz039
  169. Lei Chen; Qiang Qin; Yu Jiang; Kun Wang; Zeshan Lin; Zhipeng Li; Faysal Bibi; et al. "Large-scale ruminant genome sequencing provides insights into their evolution and distinct traits". Science 364 6446 (2019): 1152---1152--. https://curis.ku.dk/portal/en/publications/largescale-ruminant-genome-sequencing-provides-insights-into-their-evolution-and-distinct-traits(a99299d7-12c6-4a62-86a0-bb5e9ecc60af).html.
    10.1126/science.aav6202
  170. Rui Borges; João Fonseca; Cidália Gomes; Warren E. Johnson; Stephen J. O'Brien; Guojie Zhang; M Thomas P Gilbert; Erich D. Jarvis; Agostinho Antunes. "Avian Binocularity and Adaptation to Nocturnal Environments". Genome Biology and Evolution 11 8 (2019): 2244-2255. https://curis.ku.dk/portal/en/publications/avian-binocularity-and-adaptation-to-nocturnal-environments(502f0329-d014-4433-a4fd-4c1ddc6fcf30).html.
    10.1093/gbe/evz111
  171. Marcela Sandoval-Velasco; Anuradha Jagadeesan; María C. Ávila-Arcos; Shyam Gopalakrishnan; Jazmín Ramos-Madrigal; J. Víctor Moreno-Mayar; Gabriel Renaud; et al. "The genetic origins of Saint Helena’s liberated Africans". (2019): https://researchprofiles.ku.dk/en/publications/the-genetic-origins-of-saint-helenas-liberated-africans(e1e7b4fa-0da3-4de8-b368-567e68d7e724).html.
    10.1101/787515
  172. Maiken Hemme Bro-Jørgensen; Christian Carøe; Filipe G Vieira; Sofia Nestor; Ann Hallström; Kristian M. Gregersen; Vivian Etting; M Thomas P Gilbert; Mikkel-Holger S. Sinding. "Ancient DNA analysis of Scandinavian medieval drinking horns and the horn of the last aurochs bull". Journal of Archaeological Science 99 (2018): 47-54. https://curis.ku.dk/portal/en/publications/ancient-dna-analysis-of-scandinavian-medieval-drinking-horns-and-the-horn-of-the-last-aurochs-bull(7aa06b6f-c28b-4ffe-8d57-7b1b5cbe01a3).html.
    10.1016/j.jas.2018.09.001
  173. Lee Koren; Devorah Matas; Patrícia Pecnerová; Love Dalén; Alexei Tikhonov; M Thomas P Gilbert; Katherine E. Wynne-edwards; Eli Geffen. "Testosterone in ancient hair from an extinct species". Special Papers in Palaeontology 61 6 (2018): 797-802. https://curis.ku.dk/portal/en/publications/testosterone-in-ancient-hair-from-an-extinct-species(77c391ef-532e-43cc-8ecb-81640da8aef1).html.
    10.1111/pala.2018.61.issue-6
  174. Ross Barnett; Mikkel-Holder S. Sinding; Filipe G Vieira; Marie Lisandra Zepeda Mendoza; Matthieu Bonnet; Alessandro Araldi; Ivonne Kienast; et al. "No longer locally extinct? Tracing the origins of a lion (Panthera leo) living in Gabon". Conservation Genetics 19 3 (2018): 611-618. https://curis.ku.dk/portal/en/publications/no-longer-locally-extinct-tracing-the-origins-of-a-lion-panthera-leo-living-in-gabon(92138cf1-2d75-4aee-b4fc-4a852319eaf5).html.
    10.1007/s10592-017-1039-2
  175. Christian Carøe; Shyam Gopalakrishnan; Lasse Vinner; Sarah Mak; Mikkel-Holger S. Sinding; Jose A. Samaniego; Nathan Wales; Thomas Sicheritz-Ponten; M Thomas P Gilbert. "Single-tube library preparation for degraded DNA". Methods in Ecology and Evolution 9 2 (2018): 410-419. https://curis.ku.dk/portal/en/publications/singletube-library-preparation-for-degraded-dna(2eb9a522-ad4f-4a39-866a-e6eb0f1a6f9d).html.
    10.1111/2041-210X.12871
  176. "Interspecific Gene Flow Shaped the Evolution of the Genus Canis". Current biology : CB (2018): http://europepmc.org/articles/PMC6224481.
    10.1016/j.cub.2018.08.041
  177. "Population genomics of grey wolves and wolf-like canids in North America". PLoS genetics (2018): http://europepmc.org/articles/PMC6231604.
    10.1371/journal.pgen.1007745
  178. "Multiproxy evidence highlights a complex evolutionary legacy of maize in South America". Science (New York, N.Y.) (2018): https://doi.org/10.1126/science.aav0207.
    10.1126/science.aav0207
  179. "Multi-omics and potential applications in wine production". Current opinion in biotechnology (2018): https://doi.org/10.1016/j.copbio.2018.11.014.
    10.1016/j.copbio.2018.11.014
  180. "Identification of transcription factor genes involved in anthocyanin biosynthesis in carrot (Daucus carota L.) using RNA-Seq". BMC genomics (2018): http://europepmc.org/articles/PMC6225646.
    10.1186/s12864-018-5135-6
  181. "Bat Biology, Genomes, and the Bat1K Project: To Generate Chromosome-Level Genomes for All Living Bat Species". Annual review of animal biosciences (2018): https://doi.org/10.1146/annurev-animal-022516-022811.
    10.1146/annurev-animal-022516-022811
  182. "Using DNA metabarcoding for simultaneous inference of common vampire bat diet and population structure". Molecular ecology resources (2018): http://europepmc.org/articles/PMC6120510.
    10.1111/1755-0998.12891
  183. "Quantifying Temporal Genomic Erosion in Endangered Species". Trends in ecology & evolution (2018): https://doi.org/10.1016/j.tree.2017.12.002.
    10.1016/j.tree.2017.12.002
  184. "Agriculture shapes the trophic niche of a bat preying on multiple pest arthropods across Europe: Evidence from DNA metabarcoding". Molecular ecology (2018): https://doi.org/10.1111/mec.14474.
    10.1111/mec.14474
  185. "Applied Hologenomics: Feasibility and Potential in Aquaculture". Trends in biotechnology (2018): https://doi.org/10.1016/j.tibtech.2017.12.006.
    10.1016/j.tibtech.2017.12.006
  186. "Earth BioGenome Project: Sequencing life for the future of life". Proceedings of the National Academy of Sciences of the United States of America (2018): http://europepmc.org/articles/PMC5924910.
    10.1073/pnas.1720115115
  187. "Recent Asian origin of chytrid fungi causing global amphibian declines". Science (New York, N.Y.) (2018): http://europepmc.org/articles/PMC6311102.
    10.1126/science.aar1965
  188. "Mind the gut: genomic insights to population divergence and gut microbial composition of two marine keystone species". Microbiome (2018): http://europepmc.org/articles/PMC5932900.
    10.1186/s40168-018-0467-7
  189. "Whole-Genome Sequencing of African Dogs Provides Insights into Adaptations against Tropical Parasites". Molecular biology and evolution (2018): https://doi.org/10.1093/molbev/msx258.
    10.1093/molbev/msx258
  190. "Greenland sled dogs at risk of extinction". Science (New York, N.Y.) (2018): https://doi.org/10.1126/science.aat9578.
    10.1126/science.aat9578
  191. "Improved Genome Assembly and Annotation for the Rock Pigeon (Columba livia)". G3 (Bethesda, Md.) (2018): http://europepmc.org/articles/PMC5940132.
    10.1534/g3.117.300443
  192. "The evolutionary history of dogs in the Americas". Science (New York, N.Y.) (2018): https://doi.org/10.1126/science.aao4776.
    10.1126/science.aao4776
  193. "Ancient genomes from Iceland reveal the making of a human population". Science (New York, N.Y.) (2018): https://doi.org/10.1126/science.aar2625.
    10.1126/science.aar2625
  194. "Debugging diversity - a pan-continental exploration of the potential of terrestrial blood-feeding leeches as a vertebrate monitoring tool". Molecular ecology resources (2018): https://doi.org/10.1111/1755-0998.12912.
    10.1111/1755-0998.12912
  195. "Pan-genome Analysis of Ancient and Modern Salmonella enterica Demonstrates Genomic Stability of the Invasive Para C Lineage for Millennia". Current biology : CB (2018): http://europepmc.org/articles/PMC6089836.
    10.1016/j.cub.2018.05.058
  196. "Protective role of the vulture facial skin and gut microbiomes aid adaptation to scavenging". Acta veterinaria Scandinavica (2018): http://europepmc.org/articles/PMC6182802.
    10.1186/s13028-018-0415-3
  197. "Promises and pitfalls of using high-throughput sequencing for diet analysis". Molecular ecology resources (2018): https://doi.org/10.1111/1755-0998.12960.
    10.1111/1755-0998.12960
  198. "MobiSeq: De novo SNP discovery in model and non-model species through sequencing the flanking region of transposable elements". Molecular ecology resources (2018): https://doi.org/10.1111/1755-0998.12984.
    10.1111/1755-0998.12984
  199. Marie Lisandra Zepeda Mendoza; Zijun Xiong; Marina Escalera-Zamudio; Anne Kathrine Runge; Julien Thézé; Daniel Streicker; Hannah K. Frank; et al. "Hologenomic adaptations underlying the evolution of sanguivory in the common vampire bat". Nature Ecology & Evolution 2 4 (2018): 659-668. https://curis.ku.dk/portal/en/publications/hologenomic-adaptations-underlying-the-evolution-of-sanguivory-in-the-common-vampire-bat(077d8d9a-3973-4e11-98e4-558382cc8395).html.
    10.1038/s41559-018-0476-8
  200. T. Z. T. Jensen; Jonas Niemann; K. Højholt Iversen; Anna Fotakis; S. Gopalakrishan; Mikkel-Holger S. Sinding; Martin Rene Ellegaard; et al. "Stone Age “chewing gum” yields 5,700 yearold human genome and oral microbiome". (2018): https://researchprofiles.ku.dk/en/publications/stone-age-chewing-gum-yields-5700-yearold-human-genome-and-oral-microbiome(5de9f09e-76ca-4137-8e44-dd6f74153c1f).html.
  201. "Comparative performance of the BGISEQ-500 vs Illumina HiSeq2500 sequencing platforms for palaeogenomic sequencing.". GigaScience (2017): http://europepmc.org/abstract/med/28854615.
    10.1093/gigascience/gix049
  202. "An ¿Aukward' Tale: A Genetic Approach to Discover the Whereabouts of the Last Great Auks.". Genes (2017): http://europepmc.org/abstract/med/28617333.
    10.3390/genes8060164
  203. "Draft genome of the fungus-growing termite pathogenic fungus Ophiocordyceps bispora (Ophiocordycipitaceae, Hypocreales, Ascomycota).". Data in brief (2017): http://europepmc.org/abstract/med/28349099.
    10.1016/j.dib.2017.02.051
  204. "Molecular clocks indicate turnover and diversification of modern coleoid cephalopods during the Mesozoic Marine Revolution.". Proceedings. Biological sciences (2017): http://europepmc.org/abstract/med/28250188.
    10.1098/rspb.2016.2818
  205. "Characterizing restriction enzyme-associated loci in historic ragweed (Ambrosia artemisiifolia) voucher specimens using custom-designed RNA probes.". Molecular ecology resources (2017): http://europepmc.org/abstract/med/27762072.
    10.1111/1755-0998.12610
  206. "Documenting DNA in the dust.". Molecular ecology (2017): http://europepmc.org/abstract/med/28239926.
    10.1111/mec.13944
  207. "Functional roles of Aves class-specific cis-regulatory elements on macroevolution of bird-specific features.". Nature communications (2017): http://europepmc.org/abstract/med/28165450.
    10.1038/ncomms14229
  208. Marcela Sandoval-Velasco; Inge K. C. Lundstrøm; Nathan Wales; María C. Ávila-Arcos; Hannes Schroeder; M. Thomas P. Gilbert. "Relative performance of two DNA extraction and library preparation methods on archaeological human teeth samples". STAR: Science & Technology of Archaeological Research 3 1 (2017): 80-88. https://doi.org/10.1080/20548923.2017.1388551.
    10.1080/20548923.2017.1388551
  209. Kampmann, M.-L.; Schnell, I.B.; Jensen, R.H.; Axtner, J.; Sander, A.F.; Hansen, A.J.; Bertelsen, M.F.; et al. "Leeches as a source of mammalian viral DNA and RNA—a study in medicinal leeches". European Journal of Wildlife Research 63 2 (2017): http://www.scopus.com/inward/record.url?eid=2-s2.0-85015922208&partnerID=MN8TOARS.
    10.1007/s10344-017-1093-6
  210. Alberdi, A.; Aizpurua, O.; Gilbert, M.T.P.; Bohmann, K.. "Scrutinizing key steps for reliable metabarcoding of environmental samples". Methods in Ecology and Evolution (2017): http://www.scopus.com/inward/record.url?eid=2-s2.0-85026647676&partnerID=MN8TOARS.
    10.1111/2041-210X.12849
  211. "Eggshell palaeogenomics: Palaeognath evolutionary history revealed through ancient nuclear and mitochondrial DNA from Madagascan elephant bird (Aepyornis sp.) eggshell". Molecular phylogenetics and evolution (2017): https://doi.org/10.1016/j.ympev.2017.01.005.
    10.1016/j.ympev.2017.01.005
  212. "Connecting Earth observation to high-throughput biodiversity data". Nature ecology & evolution (2017): https://doi.org/10.1038/s41559-017-0176.
    10.1038/s41559-017-0176
  213. "The wolf reference genome sequence (Canis lupus lupus) and its implications for Canis spp. population genomics". BMC genomics (2017): http://europepmc.org/articles/PMC5492679.
    10.1186/s12864-017-3883-3
  214. "An expanded mammal mitogenome dataset from Southeast Asia". GigaScience (2017): http://europepmc.org/articles/PMC5737531.
    10.1093/gigascience/gix053
  215. "Evolutionary History of Saber-Toothed Cats Based on Ancient Mitogenomics". Current biology : CB (2017): https://doi.org/10.1016/j.cub.2017.09.033.
    10.1016/j.cub.2017.09.033
  216. "Natural selection shaped the rise and fall of passenger pigeon genomic diversity". Science (New York, N.Y.) (2017): https://doi.org/10.1126/science.aao0960.
    10.1126/science.aao0960
  217. "Genome-wide Ancestry and Demographic History of African-Descendant Maroon Communities from French Guiana and Suriname". American journal of human genetics (2017): http://europepmc.org/articles/PMC5673667.
    10.1016/j.ajhg.2017.09.021
  218. "Mitochondrial DNA from the eradicated European Plasmodium vivax and P. falciparum from 70-year-old slides from the Ebro Delta in Spain.". Proceedings of the National Academy of Sciences of the United States of America (2016): http://europepmc.org/abstract/med/27671660.
    10.1073/pnas.1611017113
  219. "Complete mitochondrial genomes of living and extinct pigeons revise the timing of the columbiform radiation.". BMC evolutionary biology (2016): http://europepmc.org/abstract/med/27782796.
    10.1186/s12862-016-0800-3
  220. "Do Vertebrate Gut Metagenomes Confer Rapid Ecological Adaptation?". Trends in ecology & evolution (2016): http://europepmc.org/abstract/med/27453351.
    10.1016/j.tree.2016.06.008
  221. "The population genomic basis of geographic differentiation in North American common ragweed (Ambrosia artemisiifolia L.).". Ecology and Evolution (2016): http://europepmc.org/abstract/med/28725355.
    10.1002/ece3.2143
  222. "DAMe: a toolkit for the initial processing of datasets with PCR replicates of double-tagged amplicons for DNA metabarcoding analyses.". BMC research notes (2016): http://europepmc.org/abstract/med/27142414.
    10.1186/s13104-016-2064-9
  223. "Bone-associated gene evolution and the origin of flight in birds.". BMC genomics (2016): http://europepmc.org/abstract/med/27193938.
    10.1186/s12864-016-2681-7
  224. "Whole-Genome Identification, Phylogeny, and Evolution of the Cytochrome P450 Family 2 (CYP2) Subfamilies in Birds.". Genome biology and evolution (2016): http://europepmc.org/abstract/med/26979796.
    10.1093/gbe/evw041
  225. "Genomic population structure of freshwater-resident and anadromous ide (Leuciscus idus) in north-western Europe.". Ecology and Evolution (2016): http://europepmc.org/abstract/med/26941944.
    10.1002/ece3.1909
  226. "Genome-culture coevolution promotes rapid divergence of killer whale ecotypes.". Nature communications (2016): http://europepmc.org/abstract/med/27243207.
    10.1038/ncomms11693
  227. Finch, B.W.; Hunter, N.D.; Winkelmann, I.; Manzano-Vargas, K.; Njoroge, P.; Fjeldså, J.; Gilbert, M.T.P.. "Redefining the taxonomy of the all-black and pied boubous (Laniarius spp.) in coastal Kenya and Somalia". Bulletin of the British Ornithologists' Club 136 2 (2016): 74-85. http://www.scopus.com/inward/record.url?eid=2-s2.0-84982166633&partnerID=MN8TOARS.
  228. "Further evidence of Chelonid herpesvirus 5 (ChHV5) latency: high levels of ChHV5 DNA detected in clinically healthy marine turtles.". PeerJ (2016): http://europepmc.org/abstract/med/27547576.
    10.7717/peerj.2274
  229. M Thomas P Gilbert; Mikkel-Holger S. Sinding. "The Draft Genome of Extinct European Aurochs and its Implications for De-Extinction". Open Quaternary 2 (2016): https://curis.ku.dk/portal/en/publications/the-draft-genome-of-extinct-european-aurochs-and-its-implications-for-deextinction(cb8f9ac8-ee45-404f-b00c-8c17d0b813ff).html.
    10.5334/oq.25
  230. Wales, N.; Ramos Madrigal, J.; Cappellini, E.; Carmona Baez, A.; Samaniego Castruita, J.A.; Romero-Navarro, J.A.; Carøe, C.; et al. "The limits and potential of paleogenomic techniques for reconstructing grapevine domestication". Journal of Archaeological Science 72 (2016): 57-70. http://www.scopus.com/inward/record.url?eid=2-s2.0-84973856021&partnerID=MN8TOARS.
    10.1016/j.jas.2016.05.014
  231. Richmond, D.J.; Sinding, M.-H.S.; Gilbert, M.T.P.. "The potential and pitfalls of de-extinction". Zoologica Scripta 45 (2016): 22-36. http://www.scopus.com/inward/record.url?eid=2-s2.0-84988982547&partnerID=MN8TOARS.
    10.1111/zsc.12212
  232. "Genome Sequence of a 5,310-Year-Old Maize Cob Provides Insights into the Early Stages of Maize Domestication". Current biology : CB (2016): https://doi.org/10.1016/j.cub.2016.09.036.
    10.1016/j.cub.2016.09.036
  233. "New insights on single-stranded versus double-stranded DNA library preparation for ancient DNA.". BioTechniques (2015): http://europepmc.org/abstract/med/26651516.
    10.2144/000114364
  234. Olalde, I.; Schroeder, H.; Sandoval-Velasco, M.; Vinner, L.; Lobón, I.; Ramirez, O.; Civit, S.; et al. "A common genetic origin for early farmers from mediterranean cardial and central european LBK cultures". Molecular Biology and Evolution 32 12 (2015): 3132-3142. http://www.scopus.com/inward/record.url?eid=2-s2.0-84948176458&partnerID=MN8TOARS.
    10.1093/molbev/msv181
  235. Da Fonseca, R.R.; Smith, B.D.; Wales, N.; Cappellini, E.; Skoglund, P.; Fumagalli, M.; Samaniego, J.A.; et al. "The origin and evolution of maize in the Southwestern United States". Nature Plants 1 (2015): http://www.scopus.com/inward/record.url?eid=2-s2.0-84925407129&partnerID=MN8TOARS.
    10.1038/nplants.2014.3
  236. Jarvis, E.D.; Mirarab, S.; Aberer, A.J.; Li, B.; Houde, P.; Li, C.; Ho, S.Y.W.; et al. "Phylogenomic analyses data of the avian phylogenomics project". GigaScience 4 1 (2015): http://www.scopus.com/inward/record.url?eid=2-s2.0-84929606489&partnerID=MN8TOARS.
    10.1186/s13742-014-0038-1
  237. Roggenbuck, M.; Schnell, I.Bæ.; Blom, N.; Bælum, J.; Bertelsen, M.F.; Sicheritz-Pontén, T.; Sørensen, Sø.J.; et al. "Erratum: The microbiome of New World vultures (Nature Communications (2014) 5 (5498) DOI:10.1038/ncomms6498)". Nature Communications 6 (2015): http://www.scopus.com/inward/record.url?eid=2-s2.0-84944877162&partnerID=MN8TOARS.
    10.1038/ncomms9774
  238. Christian Anders Wathne Bruhn; Sandra Cathrine Abel Nielsen; José Alfredo Samaniego Castruita; Jemma Wadsworth; Nick J. Knowles; M Thomas P Gilbert. "Viral meningitis epidemics and a single, recent, recombinant and anthroponotic origin of swine vesicular disease virus". Evolution, Medicine, and Public Health 2015 1 (2015): 289-303. https://curis.ku.dk/portal/en/publications/viral-meningitis-epidemics-and-a-single-recent-recombinant-and-anthroponotic-origin-of-swine-vesicular-disease-virus(1dcfe442-a9d7-4077-9032-566797553d65).html.
    10.1093/emph/eov026
  239. Sonne, Christian; Dyck, Markus; Rigét, Frank F.; Jensen, Jens-Erik Beck; Hyldstrup, Lars; Letcher, Robert J.; Gustavson, Kim; Gilbert, M. Thomas P.; Dietz, Rune. "Penile density and globally used chemicals in Canadian and Greenland polar bears". Environmental Research 137 C (2015): 287-291. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000352331000034&KeyUID=WOS:000352331000034.
    10.1016/j.envres.2014.12.026
  240. Orlando, Ludovic; Gilbert, M. Thomas P.; Willerslev, Eske. "Reconstructing ancient genomes and epigenomes". Nature Publishing Group (2015): 1-14. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000356447500008&KeyUID=WOS:000356447500008.
    10.1038/nrg3935
  241. Cracraft, J.; Houde, P.. "Response to Comment on “Whole-genome analyses resolve early branches in the tree of life of modern birds". Science (New York, NY) (2015): 1-4.
    papers2://publication/uuid/FF066611-B3FC-486C-B8C7-9D240B9C0412
  242. Schnell, Ida Bærholm; Bohmann, Kristine; Gilbert, M. Thomas P.. "Tag jumps illuminated - reducing sequence-to-sample misidentifications in metabarcoding studies". Molecular Ecology Resources (2015): n/a-n/a. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000362838300004&KeyUID=WOS:000362838300004.
    10.1111/1755-0998.12402
  243. Koepfli, Klaus-Peter; Paten, Benedict; the Genome, K. Community of Scientists; O'Brien, Stephen J.. "The Genome 10K Project: A Way Forward". Annual Review of Animal Biosciences 3 1 (2015): 57-111. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000350991900004&KeyUID=WOS:000350991900004.
    10.1146/annurev-animal-090414-014900
  244. Bruhn, C. A. W.; Nielsen, S. C. A.. "Viral Meningitis Epidemics and a Single, Recent, Recombinant and Anthroponotic Origin of Swine Vesicular Disease Virus". (2015):
    papers2://publication/uuid/A45DF9FF-D6B8-4F6C-A8D0-F6CDA8BDE5CB
  245. Zepeda Mendoza, M. L.; Sicheritz-Ponten, T.; Gilbert, M. T. P.. "Environmental genes and genomes: understanding the differences and challenges in the approaches and software for their analyses". Briefings in Bioinformatics (2015): http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000361756900002&KeyUID=WOS:000361756900002.
    10.1093/bib/bbv001
  246. Schroeder, Hannes; Ávila-Arcos, María C.; Malaspinas, Anna-Sapfo; Poznik, G. David; Sandoval-Velasco, Marcela; Carpenter, Meredith L.; Moreno-Mayar, José Víctor; et al. "Genome-wide ancestry of 17th-century enslaved Africans from the Caribbean". Proceedings of the National Academy of Sciences (2015): 201421784-201421784. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000351477000038&KeyUID=WOS:000351477000038.
    10.1073/pnas.1421784112
  247. Martin, Michael D.; Vieira, Filipe G.; Ho, Simon Y. W.; Wales, Nathan; Schubert, Mikkel; Seguin-Orlando, Andaine; Ristaino, Jean B.; Gilbert, M. Thomas P.. "Genomic characterization of a South American Phytophthora hybrid mandates reassessment of the geographic origins of Phytophthora infestans". Molecular biology and evolution (2015):
    papers2://publication/doi/10.1093/molbev/msv241
  248. Zhang, Guojie; Rahbek, Carsten; Graves, Gary R.; Lei, Fumin; Jarvis, Erich D.; Gilbert, M. Thomas P.. "Genomics: Bird sequencing project takes off". Nature 522 7554 (2015): 34-34.
    papers2://publication/doi/10.1038/522034d
  249. Morin, Phillip A.; Parsons, Kim M.; Archer, Frederick I.; Ávila-Arcos, María C.; Barrett-Lennard, Lance G.; Dalla Rosa, Luciano; Duchene, Sebastián; et al. "Geographic and temporal dynamics of a global radiation and diversification in the killer whale". Molecular Ecology 24 15 (2015): 3964-3979. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000358335300014&KeyUID=WOS:000358335300014.
    10.1111/mec.13284
  250. Schnell, Ida Bærholm; Sollmann, Rahel; Calvignac-Spencer, Sébastien; Siddall, Mark E.; Yu, Douglas W.; Wilting, Andreas; Gilbert, M. Thomas P.. "iDNA from terrestrial haematophagous leeches as a wildlife surveying and monitoring tool – prospects, pitfalls and avenues to be developed". Frontiers in zoology (2015): 1-14. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000362068700001&KeyUID=WOS:000362068700001.
    10.1186/s12983-015-0115-z
  251. Castruita, José Alfredo Samaniego; Mendoza, Marie Lisandra Zepeda; Barnett, Ross; Wales, Nathan; Gilbert, M. Thomas P.. "Odintifier - A computational method for identifying insertions of organellar origin from modern and ancient high-throughput sequencing data based on haplotype phasing". BMC Bioinformatics (2015): 1-13. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000358474700001&KeyUID=WOS:000358474700001.
    10.1186/s12859-015-0682-1
  252. Khan, Imran; Yang, Zhikai; Maldonado, Emanuel; Li, Cai; Zhang, Guojie; Gilbert, M. Thomas P.; Jarvis, Erich D.; et al. "Olfactory Receptor Subgenomes Linked with Broad Ecological Adaptations in Sauropsida". Molecular biology and evolution 32 11 (2015): 2832-2843. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000363033100003&KeyUID=WOS:000363033100003.
    10.1093/molbev/msv155
  253. Pedersen, Mikkel Winther; Overballe-Petersen, Soren; Ermini, Luca; Sarkissian, Clio Der; Haile, James; Hellstrom, Micaela; Spens, Johan; et al. "Ancient and modern environmental DNA". Philosophical Transactions of the Royal Society B-Biological Sciences 370 1660 (2015): http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000346147700011&KeyUID=WOS:000346147700011.
    10.1098/rstb.2013.0383
  254. Sarkissian, Clio Der; Allentoft, Morten E.; Avila-Arcos, Maria C.; Barnett, Ross; Campos, Paula F.; Cappellini, Enrico; Ermini, Luca; et al. "Ancient genomics". Philosophical Transactions of the Royal Society B-Biological Sciences 370 1660 (2015): http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000346147700015&KeyUID=WOS:000346147700015.
    10.1098/rstb.2013.0387
  255. Malmstrom, Helena; Linderholm, Anna; Skoglund, Pontus; Stora, Jan; Sjodin, Per; Gilbert, M. Thomas P.; Holmlund, Gunilla; et al. "Ancient mitochondrial DNA from the northern fringe of the Neolithic farming expansion in Europe sheds light on the dispersion process". Philosophical Transactions of the Royal Society B-Biological Sciences 370 1660 (2015): http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000346147700002&KeyUID=WOS:000346147700002.
    10.1098/rstb.2013.0373
  256. ELry, LLl. "Avianbase: a community resource for bird genomics". (2015): http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000351817300005&KeyUID=WOS:000351817300005.
    10.1186/s13059-015-0588-2
  257. Ávila-Arcos, María C.; Sandoval-Velasco, Marcela; Schroeder, Hannes; Carpenter, Meredith L.; Malaspinas, Anna-Sapfo; Wales, Nathan; Peñaloza, Fernando; Bustamante, Carlos D.; Gilbert, M. Thomas P.. "Comparative performance of two whole-genome capture methodologies on ancient DNA Illumina libraries". Methods in Ecology and Evolution (2015): n/a-n/a. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000356718500011&KeyUID=WOS:000356718500011.
    10.1111/2041-210X.12353
  258. Alberdi, Antton; Gilbert, M. Thomas P.; Razgour, Orly; Aizpurua, Ostaizka; Aihartza, Joxerra; Garin, Inazio. "Contrasting population-level responses to Pleistocene climatic oscillations in an alpine bat revealed by complete mitochondrial genomes and evolutionary history inference". Journal of Biogeography (2015): n/a-n/a. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000359376600010&KeyUID=WOS:000359376600010.
    10.1111/jbi.12535
  259. Foote, A. D.; Liu, Yue; Thomas, Gregg W. C.; rcaron, Tom aacute scaron Vina; ldi, Jessica Alf ouml; Deng, Jixin; Dugan, Shannon; et al. "Convergent evolution of the genomes of marine mammals". Nature Genetics (2015): 1-6. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000350327900020&KeyUID=WOS:000350327900020.
    10.1038/ng.3198
  260. Cracraft, J.; Houde, P.; Ho, S.Y.W.; Mindell, D.P.; Fjeldså, J.; Lindow, B.; Edwards, S.V.; et al. "Response to Comment on "Whole-genome analyses resolve early branches in the tree of life of modern birds"". Science 349 6255 (2015): 1460-b. http://www.scopus.com/inward/record.url?eid=2-s2.0-84942163816&partnerID=MN8TOARS.
    10.1126/science.aab1578
  261. Sinding, M.H.S.; Arneborg, J.; Nyegaard, G.; Gilbert, M.T.P.. "Ancient DNA unravels the truth behind the controversial GUS Greenlandic Norse fur samples: The bison was a horse, and the muskox and bears were goats". Journal of Archaeological Science 53 (2015): 297-303. http://www.scopus.com/inward/record.url?eid=2-s2.0-84910616408&partnerID=MN8TOARS.
    10.1016/j.jas.2014.10.028
  262. M W Jacobsen; J M Pujolar; M T P Gilbert; J V Moreno-Mayar; L Bernatchez; T D Als; J Lobon-Cervia; M M Hansen. "Speciation and demographic history of Atlantic eels (Anguilla anguilla and A. rostrata) revealed by mitogenome sequencing". Heredity 113 5 (2014): 432-442. https://doi.org/10.1038/hdy.2014.44.
    10.1038/hdy.2014.44
  263. Anthea Gentry; A M Lister; Anna-Marie Roos; M Thomas P Gilbert; Enrico Cappellini. "The lectotype for the Asian elephant, Elephas maximus Linnaeus, 1758 (Mammalia, Proboscidea) and comments on `primary, secondary and tertiary syntypes' and `virtual lectotype designation'". Bulletin of Zoological Nomenclature 71 3 (2014): https://curis.ku.dk/portal/en/publications/the-lectotype-for-the-asian-elephant-elephas-maximus-linnaeus-1758-mammalia-proboscidea-and-comments-on-primary-secondary-and-tertiary-syntypes-and-virtual-lectotype-designation(1ec36818-9e26-45bc-ae7f-c93911afb7f8).html.
  264. Gilbert, M. Thomas P.. "Yersinia pestis: one pandemic, two pandemics, three pandemics, more?". The Lancet Infectious Diseases (2014): 1-2. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000333501600006&KeyUID=WOS:000333501600006.
    10.1016/S1473-3099(14)70002-7
  265. Sandra Cathrine Abel Nielsen; Christian Anders Wathne Bruhn; José Alfredo Samaniego Castruita; Jemma Wadsworth; Nick J. Knowles; M Thomas P Gilbert. "Near-complete genome sequencing of swine vesicular disease virus using the Roche GS FLX sequencing platform". PLOS ONE 9 5 (2014): https://curis.ku.dk/portal/en/publications/nearcomplete-genome-sequencing-of-swine-vesicular-disease-virus-using-the-roche-gs-flx-sequencing-platform(dfcff74e-b2aa-4cdb-a3b7-9e0cf9ab4a4f).html.
    10.1371/journal.pone.0097180
  266. Gerbault, P.; Allaby, R. G.; Boivin, N.; Rudzinski, A.; Grimaldi, I. M.; Pires, J. C.; Climer Vigueira, C.; et al. "Storytelling and story testing in domestication". Proceedings of the National Academy of Sciences (2014): http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000335199000029&KeyUID=WOS:000335199000029.
    10.1073/pnas.1400425111
  267. Raghavan, Maanasa; DeGiorgio, Michael; Albrechtsen, Anders; Moltke, Ida; Skoglund, Pontus; Korneliussen, Thorfinn S.; Gronnow, Bjarne; et al. "The genetic prehistory of the New World Arctic". Science 345 6200 (2014): 1020-+. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000340870900030&KeyUID=WOS:000340870900030.
    10.1126/science.1255832
  268. Roggenbuck, Michael; Schnell, Ida Baerholm; Blom, Nikolaj; Baelum, Jacob; Bertelsen, Mads Frost; Ponten, Thomas Sicheritz; Sorensen, Soren Johannes; et al. "The microbiome of New World vultures". Nature Communications 5 (2014): http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000345913000003&KeyUID=WOS:000345913000003.
    10.1038/ncomms6498
  269. Bruhn, Christian A. W.; Audelin, Anne M.; Helleberg, Marie; Bjorn-Mortensen, Karen; Obel, Niels; Gerstoft, Jan; Nielsen, Claus; et al. "The origin and emergence of an HIV-1 epidemic". AIDS 28 7 (2014): 1031-1040. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000335350900012&KeyUID=WOS:000335350900012.
    10.1097/QAD.0000000000000198
  270. Cappellini, E.; Collins, M. J.; Gilbert, M. T. P.. "Unlocking Ancient Protein Palimpsests". Science (New York, NY) 343 6177 (2014): 1320-1322. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000333108500023&KeyUID=WOS:000333108500023.
    10.1126/science.1249274
  271. Alfaro-Núñez, Alonzo; Gilbert, M. Thomas P.. "Validation of a sensitive PCR assay for the detection of Chelonid fibropapilloma-associated herpesvirus in latent turtle infections". Journal of Virological Methods 206 (2014): 38-41. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000340219100006&KeyUID=WOS:000340219100006.
    10.1016/j.jviromet.2014.05.019
  272. Nathan Wales; Kenneth Andersen; Enrico Cappellini; Maria del Carmen Avila Arcos; M Thomas P Gilbert. "Optimization of DNA recovery and amplification from non-carbonized archaeobotanical remains". PLOS ONE 9 1 (2014): https://curis.ku.dk/portal/en/publications/optimization-of-dna-recovery-and-amplification-from-noncarbonized-archaeobotanical-remains(a5f638a6-8522-4ee2-a9ce-c91e3a6ab43f).html.
    10.1371/journal.pone.0086827
  273. Jarvis, Erich D.; Mirarab, Siavash; Aberer, Andre J.; Li, Bo; Houde, Peter; Li, Cai; Ho, Simon Y. W.; et al. "Whole-genome analyses resolve early branches in the tree of life of modern birds". Science 346 6215 (2014): 1320-1331. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000346189600036&KeyUID=WOS:000346189600036.
    10.1126/science.1253451
  274. Tsangaras, Kyriakos; Wales, Nathan; Sicheritz-Ponten, Thomas; Rasmussen, Simon; Michaux, Johan; Ishida, Yasuko; Morand, Serge; et al. "Hybridization Capture Using Short PCR Products Enriches Small Genomes by Capturing Flanking Sequences (CapFlank)". Plos One 9 10 (2014): http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000342591500060&KeyUID=WOS:000342591500060.
    10.1371/journal.pone.0109101
  275. Cui, Jie; Zhao, Wei; Huang, Zhiyong; Jarvis, Erich D.; Gilbert, M. Thomas P.; Walker, Peter J.; Holmes, Edward C.; Zhang, Guojie. "Low frequency of paleoviral infiltration across the avian phylogeny". Genome Biology 15 12 (2014): http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000346609500015&KeyUID=WOS:000346609500015.
    10.1186/s13059-014-0539-3
  276. Nielsen, Sandra C. Abel; Bruhn, Christian A. W.; Samaniego, Jose Alfredo; Wadsworth, Jemma; Knowles, Nick J.; Gilbert, M. Thomas P.. "Near-Complete Genome Sequencing of Swine Vesicular Disease Virus Using the Roche GS FLX Sequencing Platform". PLoS ONE 9 5 (2014): e97180-e97180.
    papers2://publication/doi/10.1371/journal.pone.0097180.t001
  277. Wales, Nathan; Andersen, Kenneth; Cappellini, Enrico; Ávila-Arcos, María C.; Gilbert, M. Thomas P.. "Optimization of DNA Recovery and Amplification from Non-Carbonized Archaeobotanical Remains". PLoS ONE 9 1 (2014): e86827-e86827.
    papers2://publication/doi/10.1371/journal.pone.0086827.s021
  278. Warinner, Christina; Rodrigues, João F. Matias; Vyas, Rounak; Trachsel, Christian; Shved, Natallia; Grossmann, Jonas; Radini, Anita; et al. "Pathogens and host immunity in the ancient human oral cavity". Nature Genetics 46 4 (2014): 336-344. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000334510100008&KeyUID=WOS:000334510100008.
    10.1038/ng.2906
  279. Schubert, Mikkel; Jonsson, Hakon; Chang, Dan; Sarkissian, Clio Der; Ermini, Luca; Ginolhac, Aurelien; Albrechtsen, Anders; et al. "Prehistoric genomes reveal the genetic foundation and cost of horse domestication". Proceedings of the National Academy of Sciences of the United States of America 111 52 (2014): E5661-E5669. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000347444400011&KeyUID=WOS:000347444400011.
    10.1073/pnas.1416991111
  280. Hope, Paul R.; Bohmann, Kristine; Gilbert, M. Thomas P.; Zepeda-Mendoza, Marie Lisandra; Razgour, Orly; Jones, Gareth. "Second generation sequencing and morphological faecal analysis reveal unexpected foraging behaviour by Myotis nattereri (Chiroptera, Vespertilionidae) in winter". Frontiers in zoology 11 1 (2014): 39-39. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000335857000001&KeyUID=WOS:000335857000001.
    10.1186/1742-9994-11-39
  281. Meredith, Robert W.; Zhang, Guojie; Gilbert, M. Thomas P.; Jarvis, Erich D.; Springer, Mark S.. "Evidence for a single loss of mineralized teeth in the common avian ancestor". Science 346 6215 (2014): 1336-+. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000346189600041&KeyUID=WOS:000346189600041.
    10.1126/science.1254390
  282. Pereira, Joana; Johnson, Warren E.; O'Brien, Stephen J.; Jarvis, Erich D.; Zhang, Guojie; Gilbert, M. Thomas P.; Vasconcelos, Vitor; Antunes, Agostinho. "Evolutionary Genomics and Adaptive Evolution of the Hedgehog Gene Family (Shh, Ihh and Dhh) in Vertebrates". Plos One 9 12 (2014): http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000347063500001&KeyUID=WOS:000347063500001.
    10.1371/journal.pone.0074132
  283. Allentoft, M. E.; Heller, R.; Oskam, C. L.; Lorenzen, E. D.; Hale, M. L.; Gilbert, M. T. P.; Jacomb, C.; Holdaway, R. N.; Bunce, M.. "Extinct New Zealand megafauna were not in decline before human colonization". Proceedings of the National Academy of Sciences 111 13 (2014): 4922-4927. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000333579700059&KeyUID=WOS:000333579700059.
    10.1073/pnas.1314972111
  284. Willerslev, Eske; Davison, John; Moora, Mari; Zobel, Martin; Coissac, Eric; Edwards, Mary E.; Lorenzen, Eline D.; et al. "Fifty thousand years of Arctic vegetation and megafaunal diet". Nature 506 7486 (2014): 47-+. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000330648100028&KeyUID=WOS:000330648100028.
    10.1038/nature12921
  285. Borges, Rui; Khan, Imran; Johnson, Warren E.; Gilbert, M. Thomas P.; Zhang, Guojie; Jarvis, Erich D.; O'Brien, Stephen J.; Antunes, Agostinho. "Gene loss, adaptive evolution and the co-evolution of plumage coloration genes with opsins in birds". BMC Genomics 16 1 (2014): 751-751. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000362253200001&KeyUID=WOS:000362253200001.
    10.1186/s12864-015-1924-3
  286. Li, Shengbin; Li, Bo; Cheng, Cheng; Xiong, Zijun; Liu, Qingbo; Lai, Jianghua; Carey, Hannah V.; et al. "Genomic signatures of near-extinction and rebirth of the crested ibis and other endangered bird species". Genome Biology 15 12 (2014): http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000346609500029&KeyUID=WOS:000346609500029.
    10.1186/s13059-014-0557-1
  287. Alfaro-Nunez, Alonzo; Bertelsen, Mads Frost; Bojesen, Anders Miki; Rasmussen, Isabel; Zepeda-Mendoza, Lisandra; Olsen, Morten Tange; Gilbert, Marcus Thomas Pius. "Global distribution of Chelonid fibropapilloma-associated herpesvirus among clinically healthy sea turtles". Bmc Evolutionary Biology 14 (2014): http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000344957300001&KeyUID=WOS:000344957300001.
    10.1186/s12862-014-0206-z
  288. Wang, C.-C.; Gilbert, M.T.P.; Jin, L.; Li, H.. "Evaluating the Y chromosomal timescale in human demographic and lineage dating". Investigative Genetics 5 1 (2014): http://www.scopus.com/inward/record.url?eid=2-s2.0-84907063828&partnerID=MN8TOARS.
  289. Martin, Michael D.; Zimmer, Elizabeth A.; Olsen, Morten T.; Foote, Andrew D.; Gilbert, M. Thomas P.; Brush, Grace S.. "Herbarium specimens reveal a historical shift in phylogeographic structure of common ragweed during native range disturbance". Molecular Ecology 23 7 (2014): 1701-1716. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000333333500008&KeyUID=WOS:000333333500008.
    10.1111/mec.12675
  290. Li, C.; Zhang, Y.; Li, J.; Kong, L.; Hu, H.; Pan, H.; Xu, L.; et al. "Two Antarctic penguin genomes reveal insights into their evolutionary history and molecular changes related to the Antarctic environment". GigaScience 3 1 (2014): http://www.scopus.com/inward/record.url?eid=2-s2.0-84917732702&partnerID=MN8TOARS.
    10.1186/2047-217X-3-27
  291. Zhang, G.; Li, B.; Li, C.; Gilbert, M.T.P.; Jarvis, E.D.; Wang, J.. "Comparative genomic data of the Avian Phylogenomics Project". GigaScience 3 1 (2014): http://www.scopus.com/inward/record.url?eid=2-s2.0-84923112740&partnerID=MN8TOARS.
    10.1186/2047-217X-3-26
  292. Campos, P.F.; Hofreiter, M.; Orlando, L.; Willerslev, E.; Gilbert, M.T.P.. "Erratum: (Molecular Ecology)". Molecular Ecology 23 22 (2014): 5646-5648. http://www.scopus.com/inward/record.url?eid=2-s2.0-84939220571&partnerID=MN8TOARS.
    10.1111/mec.12961
  293. Pedersen, J.S.; Valen, E.; Velazquez, A.M.V.; Parker, B.J.; Rasmussen, M.; Lindgreen, S.; Lilje, B.; et al. "Genome-wide nucleosome map and cytosine methylation levels of an ancient human genome". Genome Research 24 3 (2014): 454-466. http://www.scopus.com/inward/record.url?eid=2-s2.0-84892911658&partnerID=MN8TOARS.
    10.1101/gr.163592.113
  294. Bohmann, K.; Evans, A.; Gilbert, M.T.P.; Carvalho, G.R.; Creer, S.; Knapp, M.; Yu, D.W.; de Bruyn, M.. "Erratum to Environmental DNA for wildlife biology and biodiversity monitoring. [Trends in Ecology & Evolution 29 (2014) 358 - 367]". Trends in Ecology and Evolution 29 8 (2014): http://www.scopus.com/inward/record.url?eid=2-s2.0-84904419698&partnerID=MN8TOARS.
    10.1016/j.tree.2014.05.012
  295. Martin, M.D.; Ho, S.Y.W.; Wales, N.; Ristaino, J.B.; Gilbert, M.T.P.. "Persistence of the mitochondrial lineage responsible for the Irish potato famine in extant new world Phytophthora infestans". Molecular Biology and Evolution 31 6 (2014): 1414-1420. http://www.scopus.com/inward/record.url?eid=2-s2.0-84901465752&partnerID=MN8TOARS.
    10.1093/molbev/msu086
  296. Ribeiro, Ângela M.; Zepeda-Mendoza, M. Lisandra; Bertelsen, Mads F.; Kristensen, Annemarie T.; Jarvis, Erich D.; Gilbert, M. Thomas P.; da Fonseca, Rute R.. "A refined model of the genomic basis for phenotypic variation in vertebrate hemostasis". BMC Evolutionary Biology 15 (2014): 124-124. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000357071400002&KeyUID=WOS:000357071400002.
    10.1186/s12862-015-0409-y
  297. Zhang, Guojie; Li, Cai; Li, Qiye; Li, Bo; Larkin, Denis M.; Lee, Chul; Storz, Jay F.; et al. "Comparative genomics reveals insights into avian genome evolution and adaptation". Science 346 6215 (2014): 1311-1320. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000346189600035&KeyUID=WOS:000346189600035.
    10.1126/science.1251385
  298. Zhou, Qi; Zhang, Jilin; Bachtrog, Doris; An, Na; Huang, Quanfei; Jarvis, Erich D.; Gilbert, M. Thomas P.; Zhang, Guojie. "Complex evolutionary trajectories of sex chromosomes across bird taxa". Science 346 6215 (2014): 1332-+. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000346189600037&KeyUID=WOS:000346189600037.
    10.1126/science.1246338
  299. Pfenning, Andreas R.; Hara, Erina; Whitney, Osceola; Rivas, Miriam V.; Wang, Rui; Roulhac, Petra L.; Howard, Jason T.; et al. "Convergent transcriptional specializations in the brains of humans and song-learning birds". Science 346 6215 (2014): 1333-+. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000346189600038&KeyUID=WOS:000346189600038.
    10.1126/science.1256846
  300. Larson, G.; Piperno, D. R.; Allaby, R. G.; Purugganan, M. D.; Andersson, L.; Arroyo-Kalin, M.; Barton, L.; et al. "Current perspectives and the future of domestication studies". Proceedings of the National Academy of Sciences 111 17 (2014): 6139-6146. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000335199000026&KeyUID=WOS:000335199000026.
    10.1073/pnas.1323964111
  301. Warinner, C.; Hendy, J.; Speller, C.; Cappellini, E.; Fischer, R.; Trachsel, C.; Arneborg, J.; et al. "Direct evidence of milk consumption from ancient human dental calculus". Scientific Reports 4 (2014): http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000346251200001&KeyUID=WOS:000346251200001.
    10.1038/srep07104
  302. Greenwold, Matthew J.; Bao, Weier; Jarvis, Erich D.; Hu, Haofu; Li, Cai; Gilbert, M. Thomas P.; Zhang, Guojie; Sawyer, Roger H.. "Dynamic evolution of the alpha (alpha) and beta (beta) keratins has accompanied integument diversification and the adaptation of birds into novel lifestyles". Bmc Evolutionary Biology 14 (2014): http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000346614400001&KeyUID=WOS:000346614400001.
    10.1186/s12862-014-0249-1
  303. Bohmann, Kristine; Evans, Alice; Gilbert, M. Thomas P.; Carvalho, Gary R.; Creer, Simon; Knapp, Michael; Yu, Douglas W.; de Bruyn, Mark. "Environmental DNA for wildlife biology and biodiversity monitoring". Trends in ecology & evolution (Personal edition) (2014): 1-10. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000336873800011&KeyUID=WOS:000336873800011.
    10.1016/j.tree.2014.04.003
  304. Zhang, Guojie; Jarvis, Erich D.; Gilbert, M. Thomas P.. "A flock of Genomes". Science 346 6215 (2014): 1308-1309. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000346189600033&KeyUID=WOS:000346189600033.
  305. Inger Eleanor Hall Winkelmann; Paula Campos; Jan Strugnell; Yves Cherel; Peter J. Smith; Tsunemi Kubodera; Louise Allcock; et al. "Mitochondrial genome diversity and population structure of the giant squid Architeuthis". Proceedings of the Royal Society B: Biological Sciences 280 1759 (2013): https://curis.ku.dk/portal/en/publications/mitochondrial-genome-diversity-and-population-structure-of-the-giant-squid-architeuthis(9e41c4aa-2e39-4108-918e-f339711fbf81).html.
    10.1098/rspb.2013.0273
  306. Foote, Andrew D.; Morin, Phillip A.; Pitman, Robert L.; Avila-Arcos, Maria C.; Durban, John W.; van Helden, Anton; Sinding, Mikkel-Holger S.; Gilbert, M. Thomas P.. "Mitogenomic insights into a recently described and rarely observed killer whale morphotype". Polar Biology 36 10 (2013): 1519-1523. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000324142700012&KeyUID=WOS:000324142700012.
    10.1007/s00300-013-1354-0
  307. Avila-Arcos, M. C.; Ho, S. Y. W.; Ishida, Y.; Nikolaidis, N.; Tsangaras, K.; Honig, K.; Medina, R.; et al. "One Hundred Twenty Years of Koala Retrovirus Evolution Determined from Museum Skins". Molecular biology and evolution 30 2 (2013): 299-304. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000314122000007&KeyUID=WOS:000314122000007.
    10.1093/molbev/mss223
  308. Carpenter, Meredith L.; Buenrostro, Jason D.; Valdiosera, Cristina; Schroeder, Hannes; Allentoft, Morten E.; Sikora, Martin; Rasmussen, Morten; et al. "Pulling out the 1%: Whole-Genome Capture for the Targeted Enrichment of Ancient DNA Sequencing Libraries". American journal of human genetics 93 5 (2013): 852-864. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000326996600006&KeyUID=WOS:000326996600006.
    10.1016/j.ajhg.2013.10.002
  309. Orlando, Ludovic; Ginolhac, Aurélien; Zhang, Guojie; Froese, Duane; Albrechtsen, Anders; Stiller, Mathias; Schubert, Mikkel; et al. "Recalibrating Equus evolution using the genome sequence of an early Middle Pleistocene horse". Nature (2013): 1-8. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000321285600036&KeyUID=WOS:000321285600036.
    10.1038/nature12323
  310. Moura, A. E.; Nielsen, S. C. A.; Vilstrup, J. T.; Moreno-Mayar, J. V.; Gilbert, M. T. P.; Gray, H. W. I.; Natoli, A.; Moller, L.; Hoelzel, A. R.. "Recent Diversification of a Marine Genus (Tursiops spp.) Tracks Habitat Preference and Environmental Change". Systematic biology 62 6 (2013): 865-877. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000326193500005&KeyUID=WOS:000326193500005.
    10.1093/sysbio/syt051
  311. Cappellini, Enrico; Gentry, Anthea; Palkopoulou, Eleftheria; Ishida, Yasuko; Cram, David; Roos, Anna-Marie; Watson, Mick; et al. "Resolution of the type material of the Asian elephant, Elephas maximusLinnaeus, 1758 (Proboscidea, Elephantidae)". Zoological Journal of the Linnean Society (2013): n/a-n/a. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000330782500008&KeyUID=WOS:000330782500008.
    10.1111/zoj.12084
  312. Calvignac-Spencer, Sébastien; Leendertz, Fabian H.; Gilbert, M. Thomas P.; Schubert, Grit. "An invertebrate stomach's view on vertebrate ecology". BioEssays (2013): n/a-n/a. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000325625000011&KeyUID=WOS:000325625000011.
    10.1002/bies.201300060
  313. Shapiro, M. D.; Kronenberg, Z.; Li, C.; Domyan, E. T.; Pan, H.; Campbell, M.; Tan, H.; et al. "Genomic Diversity and Evolution of the Head Crest in the Rock Pigeon". Science (New York, NY) (2013): http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000315452000038&KeyUID=WOS:000315452000038.
    10.1126/science.1230422
  314. Winkelmann, I.; Campos, P. F.; Strugnell, J.; Cherel, Y.; Smith, P. J.; Kubodera, T.; Allcock, L.; et al. "Mitochondrial genome diversity and population structure of the giant squid Architeuthis: genetics sheds new light on one of the most enigmatic marine species". Proceedings of the Royal Society B: Biological Sciences 280 1759 (2013): 20130273-20130273. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000180165800044&KeyUID=WOS:000180165800044.
    10.1126/science.1079365
  315. Ávila-Arcos, M.C.; Ho, S.Y.W.; Ishida, Y.; Nikolaidis, N.; Tsangaras, K.; Hönig, K.; Medina, R.; et al. "Erratum: One hundred twenty years of Koala retrovirus evolution determined from museum skins (Molecular Biology and Evolution (2013) 30:2 (299-304) DOI: 10.1093/molbev/mss223)". Molecular Biology and Evolution 30 5 (2013): http://www.scopus.com/inward/record.url?eid=2-s2.0-84876523845&partnerID=MN8TOARS.
    10.1093/molbev/mst015
  316. Foote, A.D.; Kaschner, K.; Schultze, S.E.; Garilao, C.; Ho, S.Y.W.; Post, K.; Higham, T.F.G.; et al. "Ancient DNA reveals that bowhead whale lineages survived Late Pleistocene climate change and habitat shifts". Nature Communications 4 (2013): http://www.scopus.com/inward/record.url?eid=2-s2.0-84877741664&partnerID=MN8TOARS.
    10.1038/ncomms2714
  317. Bohmann, K.; Schnell, I.Bæ.; Gilbert, M.T.P.. "When bugs reveal biodiversity". Molecular Ecology 22 4 (2013): 909-911. http://www.scopus.com/inward/record.url?eid=2-s2.0-84873802008&partnerID=MN8TOARS.
    10.1111/mec.12221
  318. Fordyce, S.L.; Kampmann, M.-L.; van Doorn, N.L.; Gilbert, M.T.P.. "Long-term RNA persistence in postmortem contexts". Investigative Genetics 4 1 (2013): http://www.scopus.com/inward/record.url?eid=2-s2.0-84878182515&partnerID=MN8TOARS.
    10.1186/2041-2223-4-7
  319. Fordyce, S.L.; Bragstad, K.; Pedersen, S.S.; Jensen, T.G.; Gahrn-Hansen, B.; Daniels, R.; Hay, A.; et al. "Genetic diversity among pandemic 2009 influenza viruses isolated from a transmission chain". Virology Journal 10 (2013): http://www.scopus.com/inward/record.url?eid=2-s2.0-84877774936&partnerID=MN8TOARS.
    10.1186/1743-422X-10-116
  320. Martin, M.D.; Cappellini, E.; Samaniego, J.A.; Zepeda, M.L.; Campos, P.F.; Seguin-Orlando, A.; Wales, N.; et al. "Reconstructing genome evolution in historic samples of the Irish potato famine pathogen". Nature Communications 4 (2013): http://www.scopus.com/inward/record.url?eid=2-s2.0-84892942971&partnerID=MN8TOARS.
    10.1038/ncomms3172
  321. Foote, A.D.; Newton, J.; Ávila-Arcos, M.C.; Kampmann, M.-L.; Samaniego, J.A.; Post, K.; Rosing-Asvid, A.; Sinding, M.-H.S.; Gilbert, M.T.P.. "Tracking niche variation over millennial timescales in sympatric killer whale lineages". Proceedings of the Royal Society B: Biological Sciences 280 1768 (2013): http://www.scopus.com/inward/record.url?eid=2-s2.0-84896814514&partnerID=MN8TOARS.
    10.1098/rspb.2013.1481
  322. Fordyce, S.L.; Ávila-Arcos, M.C.; Rasmussen, M.; Cappellini, E.; Romero-Navarro, J.A.; Wales, N.; Alquezar-Planas, D.E.; et al. "Deep Sequencing of RNA from Ancient Maize Kernels". PLoS ONE 8 1 (2013): http://www.scopus.com/inward/record.url?eid=2-s2.0-84872224484&partnerID=MN8TOARS.
    10.1371/journal.pone.0050961
  323. Duchene, Sebastian; Frey, Amy; Alfaro-Nunez, Alonzo; Dutton, Peter H.; Gilbert, M. Thomas P.; Morin, Phillip A.. "Marine turtle mitogenome phylogenetics and evolution". Molecular Phylogenetics and Evolution 65 1 (2012): 241-250. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000308061000021&KeyUID=WOS:000308061000021.
    10.1016/j.ympev.2012.06.010
  324. Andersen, Kenneth; Bird, Karen Lise; Rasmussen, Morten; Haile, James; Breuning-Madsen, Henrik; Kjaer, Kurt H.; Orlando, Ludovic; Gilbert, M. Thomas P.; Willerslev, Eske. "Meta-barcoding of 'dirt' DNA from soil reflects vertebrate biodiversity". Molecular Ecology 21 8 (2012): 1966-1979. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000302616200015&KeyUID=WOS:000302616200015.
    10.1111/j.1365-294X.2011.05261.x
  325. Sinding, Mikkel-Holger S.; Gilbert, M. Thomas P.; Gronnow, Bjarne; Gullov, Hans Christian; Toft, Peter A.; Foote, Andrew D.. "Minimally destructive DNA extraction from archaeological artefacts made from whale baleen". Journal of Archaeological Science 39 12 (2012): 3750-3753. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000308777400026&KeyUID=WOS:000308777400026.
    10.1016/j.jas.2012.06.020
  326. Jacobsen, Magnus W.; Hansen, Michael M.; Orlando, Ludovic; Bekkevold, Dorte; Bernatchez, Louis; Willerslev, Eske; Gilbert, M. Thomas P.. "Mitogenome sequencing reveals shallow evolutionary histories and recent divergence time between morphologically and ecologically distinct European whitefish (Coregonus spp.)". Molecular Ecology 21 11 (2012): 2727-2742. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000304389500015&KeyUID=WOS:000304389500015.
    10.1111/j.1365-294X.2012.05561.x
  327. Paijmans, Johanna L. A.; Gilbert, M. Thomas P.; Hofreiter, Michael. "Mitogenomic analyses from ancient dna". Molecular Phylogenetics and Evolution (2012): http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000324508900010&KeyUID=WOS:000324508900010.
    10.1016/j.ympev.2012.06.002
  328. Thomsen, Philip Francis; Kielgast, Jos; Iversen, Lars L.; Wiuf, Carsten; Rasmussen, Morten; Gilbert, M. Thomas P.; Orlando, Ludovic; Willerslev, Eske. "Monitoring endangered freshwater biodiversity using environmental DNA". Molecular Ecology 21 11 (2012): 2565-2573. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000304389500004&KeyUID=WOS:000304389500004.
    10.1111/j.1365-294X.2011.05418.x
  329. Skoglund, Pontus; Malmstrom, Helena; Raghavan, Maanasa; Stora, Jan; Hall, Per; Willerslev, Eske; Gilbert, M. Thomas P.; Gotherstrom, Anders; Jakobsson, Mattias. "Origins and Genetic Legacy of Neolithic Farmers and Hunter-Gatherers in Europe". Science 336 6080 (2012): 466-469. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000303233400045&KeyUID=WOS:000303233400045.
    10.1126/science.1216304
  330. Dalen, Love; Orlando, Ludovic; Shapiro, Beth; Brandstrom-Durling, Mikael; Quam, Rolf; Gilbert, M. Thomas P.; Diez Fernandez-Lomana, J. Carlos; et al. "Partial Genetic Turnover in Neandertals: Continuity in the East and Population Replacement in the West". Molecular Biology and Evolution 29 8 (2012): 1893-1897. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000307171300001&KeyUID=WOS:000307171300001.
    10.1093/molbev/mss074
  331. Jones, E. P.; Skirnisson, K.; McGovern, T. H.; Gilbert, M. T. P.; Willerslev, E.; Searle, J. B.. "Fellow travellers: a concordance of colonization patterns between mice and men in the North Atlantic region". Bmc Evolutionary Biology 12 (2012): http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000302316200001&KeyUID=WOS:000302316200001.
    10.1186/1471-2148-12-35
  332. Malmstrom, Helena; Vretemark, Maria; Tillmar, Andreas; Durling, Mikael Brandstrom; Skoglund, Pontus; Gilbert, M. Thomas P.; Willerslev, Eske; Holmlund, Gunilla; Gotherstrom, Anders. "Finding the founder of Stockholm - A kinship study based on Y-chromosomal, autosomal and mitochondrial DNA". Annals of Anatomy-Anatomischer Anzeiger 194 1 (2012): 138-145. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000303142100017&KeyUID=WOS:000303142100017.
    10.1016/j.aanat.2011.03.014
  333. Sanchez-Ouinto, Federico; Schroeder, Hannes; Ramirez, Oscar; Avila-Arcos, Maria C.; Pybus, Marc; Olalde, Inigo; Velazquez, Amhed M. V.; et al. "Genomic Affinities of Two 7,000-Year-Old Iberian Hunter-Gatherers". Current Biology 22 16 (2012): 1494-1499. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000307795000022&KeyUID=WOS:000307795000022.
    10.1016/j.cub.2012.06.005
  334. Parducci, Laura; Jorgensen, Tina; Tollefsrud, Mari Mette; Elverland, Ellen; Alm, Torbjorn; Fontana, Sonia L.; Bennett, K. D.; et al. "Glacial Survival of Boreal Trees in Northern Scandinavia". Science 335 6072 (2012): 1083-1086. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000300931100042&KeyUID=WOS:000300931100042.
    10.1126/science.1216043
  335. Murray, Daithi C.; Pearson, Stuart G.; Fullagar, Richard; Chase, Brian M.; Houston, Jayne; Atchison, Jennifer; White, Nicole E.; et al. "High-throughput sequencing of ancient plant and mammal DNA preserved in herbivore middens". Quaternary Science Reviews 58 (2012): 135-145. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000312428400011&KeyUID=WOS:000312428400011.
    10.1016/j.quascirev.2012.10.021
  336. Ginolhac, Aurelien; Vilstrup, Julia; Stenderup, Jesper; Rasmussen, Morten; Stiller, Mathias; Shapiro, Beth; Zazula, Grant; et al. "Improving the performance of true single molecule sequencing for ancient DNA". Bmc Genomics 13 (2012): http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000308084800001&KeyUID=WOS:000308084800001.
    10.1186/1471-2164-13-177
  337. Foote, Andrew D.; Thomsen, Philip Francis; Sveegaard, Signe; Wahlberg, Magnus; Kielgast, Jos; Kyhn, Line A.; Salling, Andreas B.; et al. "Investigating the Potential Use of Environmental DNA (eDNA) for Genetic Monitoring of Marine Mammals". Plos One 7 8 (2012): http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000308206000006&KeyUID=WOS:000308206000006.
    10.1371/journal.pone.0041781
  338. Jorgensen, Tina; Kjaer, Kurt H.; Haile, James; Rasmussen, Morten; Boessenkool, Sanne; Andersen, Kenneth; Coissac, Eric; et al. "Islands in the ice: detecting past vegetation on Greenlandic nunataks using historical records and sedimentary ancient DNA Meta-barcoding". Molecular Ecology 21 8 (2012): 1980-1988. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000302616200016&KeyUID=WOS:000302616200016.
    10.1111/j.1365-294X.2011.05278.x
  339. Jorgensen, Tina; Haile, James; Moller, Per; Andreev, Andrei; Boessenkool, Sanne; Rasmussen, Morten; Kienast, Frank; et al. "A comparative study of ancient sedimentary DNA, pollen and macrofossils from permafrost sediments of northern Siberia reveals long-term vegetational stability". Molecular Ecology 21 8 (2012): 1989-2003. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000302616200017&KeyUID=WOS:000302616200017.
    10.1111/j.1365-294X.2011.05287.x
  340. Wales, Nathan; Alberto Romero-Navarro, J.; Cappellini, Enrico; Gilbert, M. Thomas P.. "Choosing the Best Plant for the Job: A Cost-Effective Assay to Prescreen Ancient Plant Remains Destined for Shotgun Sequencing". Plos One 7 9 (2012): http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000309388900084&KeyUID=WOS:000309388900084.
    10.1371/journal.pone.0045644
  341. Jenkins, Dennis L.; Davis, Loren G.; Stafford, Thomas W., Jr.; Campos, Paula F.; Hockett, Bryan; Jones, George T.; Cummings, Linda Scott; et al. "Clovis Age Western Stemmed Projectile Points and Human Coprolites at the Paisley Caves". Science 337 6091 (2012): 223-228. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000306323500056&KeyUID=WOS:000306323500056.
    10.1126/science.1218443
  342. Campos, Paula F.; Gilbert, Thomas M. P.. "DNA extraction from formalin-fixed material". Methods in molecular biology (Clifton, N.J.) 840 (2012): 81-85. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000321877600012&KeyUID=WOS:000321877600012.
    10.1007/978-1-61779-516-9_11
  343. Olsen, Maia E.; Bengtsson, Camilla Friis; Bertelsen, Mads F.; Willerslev, Eske; Gilbert, M. Thomas P.. "DNA from keratinous tissue Part II: Feather". Annals of Anatomy-Anatomischer Anzeiger 194 1 (2012): 31-35. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000303142100006&KeyUID=WOS:000303142100006.
    10.1016/j.aanat.2011.03.003
  344. Bengtsson, Camilla Friis; Olsen, Maia E.; Brandt, Luise Orsted; Bertelsen, Mads F.; Willerslev, Eske; Tobin, Desmond J.; Wilson, Andrew S.; Gilbert, M. Thomas P.. "DNA from keratinous tissue. Part I: Hair and nail". Annals of Anatomy-Anatomischer Anzeiger 194 1 (2012): 17-25. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000303142100004&KeyUID=WOS:000303142100004.
    10.1016/j.aanat.2011.03.013
  345. Yoccoz, N. G.; Brathen, K. A.; Gielly, L.; Haile, J.; Edwards, M. E.; Goslar, T.; von Stedingk, H.; et al. "DNA from soil mirrors plant taxonomic and growth form diversity". Molecular Ecology 21 15 (2012): 3647-3655. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000306478800004&KeyUID=WOS:000306478800004.
    10.1111/j.1365-294X.2012.05545.x
  346. Campos, Paula F.; Craig, Oliver E.; Turner-Walker, Gordon; Peacock, Elizabeth; Willerslev, Eske; Gilbert, M. Thomas P.. "DNA in ancient bone - Where is it located and how should we extract it?". Annals of Anatomy-Anatomischer Anzeiger 194 1 (2012): 7-16. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000303142100003&KeyUID=WOS:000303142100003.
    10.1016/j.aanat.2011.07.003
  347. Lavstsen, Thomas; Turner, Louise; Saguti, Fredy; Magistrado, Pamela; Rask, Thomas S.; Jespersen, Jakob S.; Wang, Christian W.; et al. "Plasmodium falciparum erythrocyte membrane protein 1 domain cassettes 8 and 13 are associated with severe malaria in children". Proceedings of the National Academy of Sciences of the United States of America 109 26 (2012): E1791-E1800. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000306291400016&KeyUID=WOS:000306291400016.
    10.1073/pnas.1120455109
  348. Nielsen, Sandra C. Abel; Mourier, Tobias; Baandrup, Ulrik; Soland, Tine Mangart; Bertelsen, Mads Frost; Gilbert, M. Thomas P.; Nielsen, Lars Peter. "Probable Transmission of Coxsackie B3 Virus from Human to Chimpanzee, Denmark". Emerging Infectious Diseases 18 7 (2012): 1163-1165. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000306034600023&KeyUID=WOS:000306034600023.
    10.3201/eid1807.111689
  349. Cappellini, Enrico; Jensen, Lars J.; Szklarczyk, Damian; Ginolhac, Aurelien; da Fonseca, Rute A. R.; Stafford, Thomas W., Jr.; Holen, Steven R.; et al. "Proteomic Analysis of a Pleistocene Mammoth Femur Reveals More than One Hundred Ancient Bone Proteins". Journal of Proteome Research 11 2 (2012): 917-926. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000300458300035&KeyUID=WOS:000300458300035.
    10.1021/pr200721u
  350. Schnell, Ida Baerholm; Thomsen, Philip Francis; Wilkinson, Nicholas; Rasmussen, Morten; Jensen, Lars R. D.; Willerslev, Eske; Bertelsen, Mads F.; Gilbert, M. Thomas P.. "Screening mammal biodiversity using DNA from leeches". Current Biology 22 8 (2012): R262-R263. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000303288300005&KeyUID=WOS:000303288300005.
    10.1016/j.cub.2012.02.058
  351. Lorenzen, Eline D.; Nogués-Bravo, David; Orlando, Ludovic; Weinstock, Jaco; Binladen, Jonas; Marske, Katharine A.; Ugan, Andrew; et al. "Species-specific responses of Late Quaternary megafauna to climate and humans". Nature 479 7373 (2012): 359-364. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000297059700037&KeyUID=WOS:000297059700037.
    10.1038/nature10574
  352. Mourier, Tobias; Ho, Simon Y. W.; Gilbert, M. Thomas P.; Willerslev, Eske; Orlando, Ludovic. "Statistical Guidelines for Detecting Past Population Shifts Using Ancient DNA". Molecular Biology and Evolution 29 9 (2012): 2241-2251. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000308851600017&KeyUID=WOS:000308851600017.
    10.1093/molbev/mss094
  353. Allentoft, Morten E.; Collins, Matthew; Harker, David; Haile, James; Oskam, Charlotte L.; Hale, Marie L.; Campos, Paula F.; et al. "The half-life of DNA in bone: measuring decay kinetics in 158 dated fossils". Proceedings of the Royal Society B-Biological Sciences 279 1748 (2012): 4724-4733. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000310566700006&KeyUID=WOS:000310566700006.
    10.1098/rspb.2012.1745
  354. Schnell, I.Bæ.; Thomsen, P.F.; Wilkinson, N.; Rasmussen, M.; Jensen, L.R.D.; Willerslev, E.; Bertelsen, M.F.; Gilbert, M.T.P.. "Erratum: Screening mammal biodiversity using dna from leeches (Current Biology (2012) 22 (R262-R263))". Current Biology 22 20 (2012): http://www.scopus.com/inward/record.url?eid=2-s2.0-84867798359&partnerID=MN8TOARS.
    10.1016/j.cub.2012.10.014
  355. Gilbert, M. T. P.. "The mummy returns ... and sheds new light on old questions". Molecular Ecology 20 20 (2011): 4195-4198. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000296275100001&KeyUID=WOS:000296275100001.
    10.1111/j.1365-294X.2011.05265.x
  356. Orlando, Ludovic; Ginolhac, Aurelien; Raghavan, Maanasa; Vilstrup, Julia; Rasmussen, Morten; Magnussen, Kim; Steinmann, Kathleen E.; et al. "True single-molecule DNA sequencing of a pleistocene horse bone". Genome Research 21 10 (2011): 1705-1719. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000295407800014&KeyUID=WOS:000295407800014.
    10.1101/gr.122747.111
  357. Foote, Andrew D.; Morin, Phillip A.; Durban, John W.; Willerslev, Eske; Orlando, Ludovic; Gilbert, M. Thomas P.. "Out of the Pacific and Back Again: Insights into the Matrilineal History of Pacific Killer Whale Ecotypes". Plos One 6 9 (2011): http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000295260400028&KeyUID=WOS:000295260400028.
    10.1371/journal.pone.0024980
  358. Lalueza-Fox, Caries; Gilbert, M. Thomas P.. "Paleogenomics of Archaic Hominins". Current Biology 21 24 (2011): R1002-R1009. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000298440100016&KeyUID=WOS:000298440100016.
    10.1016/j.cub.2011.11.021
  359. Arnold, Lee J.; Roberts, Richard G.; Macphee, Ross D. E.; Haile, James S.; Brock, Fiona; Moller, Per; Froese, Duane G.; et al. "Paper II - Dirt, dates and DNA: OSL and radiocarbon chronologies of perennially frozen sediments in Siberia, and their implications for sedimentary ancient DNA studies". Boreas 40 3 (2011): 417-445. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000292106800003&KeyUID=WOS:000292106800003.
    10.1111/j.1502-3885.2010.00181.x
  360. Foote, Andrew D.; Morin, Phillip A.; Durban, John W.; Pitman, Robert L.; Wade, Paul; Willerslev, Eske; Gilbert, M. Thomas P.; da Fonseca, Rute R.. "Positive selection on the killer whale mitogenome". Biology Letters 7 1 (2011): 116-118. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000286135000035&KeyUID=WOS:000286135000035.
    10.1098/rsbl.2010.0638
  361. Waters, Michael R.; Stafford, Thomas W., Jr.; McDonald, H. Gregory; Gustafson, Carl; Rasmussen, Morten; Cappellini, Enrico; Olsen, Jesper V.; et al. "Pre-Clovis Mastodon Hunting 13,800 Years Ago at the Manis Site, Washington". Science 334 6054 (2011): 351-353. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000296052500046&KeyUID=WOS:000296052500046.
    10.1126/science.1207663
  362. Allentoft, Morten E.; Oskam, Charlotte; Houston, Jayne; Hale, Marie L.; Gilbert, M. Thomas P.; Rasmussen, Morten; Spencer, Peter; et al. "Profiling the Dead: Generating Microsatellite Data from Fossil Bones of Extinct Megafauna-Protocols, Problems, and Prospects". Plos One 6 1 (2011): http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000286834300115&KeyUID=WOS:000286834300115.
    10.1371/journal.pone.0016670
  363. Lalueza-Fox, Carles; Rosas, Antonio; de la Rasilla, Marco; Gilbert, M. Thomas P.; Willerslev, Eske. "Reply to Vigilant and Langergraber: Patrilocality in Neandertals is still the most plausible explanation". Proceedings of the National Academy of Sciences of the United States of America 108 18 (2011): E88-E88. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000290203100002&KeyUID=WOS:000290203100002.
    10.1073/pnas.1103479108
  364. White, Nicole E.; Phillips, Matthew J.; Gilbert, M. Thomas P.; Alfaro-Nunez, Alonzo; Willerslev, Eske; Mawson, Peter R.; Spencer, Peter B. S.; Bunce, Michael. "The evolutionary history of cockatoos (Aves: Psittaciformes: Cacatuidae)". Molecular Phylogenetics and Evolution 59 3 (2011): 615-622. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000290609000007&KeyUID=WOS:000290609000007.
    10.1016/j.ympev.2011.03.011
  365. Takamiya, Monica; Ozen, Asli; Rasmussen, Morten; Alter, Thomas; Gilbert, Tom; Ussery, Dave W.; Knochel, Susanne. "Genome Sequence of Campylobacter jejuni strain 327, a strain isolated from a turkey slaughterhouse". Standards in Genomic Sciences 4 2 (2011): 113-122. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000292340300001&KeyUID=WOS:000292340300001.
    10.4056/sigs.1313504
  366. Takamiya, Monica; Ozen, Asli; Rasmussen, Morten; Alter, Thomas; Gilbert, Tom; Ussery, Dave W.; Knochel, Susanne. "Genome Sequences of Two Stress-Tolerant Campylobacter jejuni Poultry Strains, 305 and DFVF1099". Journal of bacteriology 193 19 (2011): 5546-5547. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000294826200063&KeyUID=WOS:000294826200063.
    10.1128/JB.05753-11
  367. Fordyce, Sarah L.; Avila-Arcos, Maria C.; Rockenbauer, Eszter; Borsting, Claus; Frank-Hansen, Rune; Petersen, Frederik Torp; Willerslev, Eske; et al. "High-throughput sequencing of core STR loci for forensic genetic investigations using the Roche Genome Sequencer FLX platform". Biotechniques 51 2 (2011): 127-+. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000294146600015&KeyUID=WOS:000294146600015.
    10.2144/000113721
  368. Razgour, Orly; Clare, Elizabeth L.; Zeale, Matt R. K.; Hanmer, Julia; Schnell, Ida Baerholm; Rasmussen, Morten; Gilbert, Thomas P.; Jones, Gareth. "High-throughput sequencing offers insight into mechanisms of resource partitioning in cryptic bat species". Ecology and Evolution 1 4 (2011): http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000312441500010&KeyUID=WOS:000312441500010.
    10.1002/ece3.49
  369. Ginolhac, Aurelien; Rasmussen, Morten; Gilbert, M. Thomas P.; Willerslev, Eske; Orlando, Ludovic. "mapDamage: testing for damage patterns in ancient DNA sequences". Bioinformatics 27 15 (2011): 2153-2155. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000292778700022&KeyUID=WOS:000292778700022.
    10.1093/bioinformatics/btr347
  370. Vilstrup, Julia T.; Ho, Simon Y. W.; Foote, Andrew D.; Morin, Phillip A.; Kreb, Danielle; Kruetzen, Michael; Parra, Guido J.; et al. "Mitogenomic phylogenetic analyses of the Delphinidae with an emphasis on the Globicephalinae". Bmc Evolutionary Biology 11 (2011): http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000289414100001&KeyUID=WOS:000289414100001.
    10.1186/1471-2148-11-65
  371. Bohmann, Kristine; Monadjem, Ara; Noer, Christina Lehmkuhl; Rasmussen, Morten; Zeale, Matt R. K.; Clare, Elizabeth; Jones, Gareth; Willerslev, Eske; Gilbert, M. Thomas P.. "Molecular Diet Analysis of Two African Free-Tailed Bats (Molossidae) Using High Throughput Sequencing". Plos One 6 6 (2011): http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000292033700086&KeyUID=WOS:000292033700086.
    10.1371/journal.pone.0021441
  372. Rasmussen, Morten; Guo, Xiaosen; Wang, Yong; Lohmueller, Kirk E.; Rasmussen, Simon; Albrechtsen, Anders; Skotte, Line; et al. "An Aboriginal Australian Genome Reveals Separate Human Dispersals into Asia". Science 333 6052 (2011): 94-98. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000295580300047&KeyUID=WOS:000295580300047.
    10.1126/science.1211177
  373. Avila-Arcos, Maria C.; Cappellini, Enrico; Alberto Romero-Navarro, J.; Wales, Nathan; Victor Moreno-Mayar, J.; Rasmussen, Morten; Fordyce, Sarah L.; et al. "Application and comparison of large-scale solution-based DNA capture-enrichment methods on ancient DNA". Scientific Reports 1 (2011): http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000296052200002&KeyUID=WOS:000296052200002.
    10.1038/srep00074
  374. van Doorn, Nienke L.; Wilson, Andrew S.; Willerslev, Eske; Gilbert, M. Thomas P.. "Bone Marrow and Bone as a Source for Postmortem RNA". Journal of Forensic Sciences 56 3 (2011): 720-725. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000289892900029&KeyUID=WOS:000289892900029.
    10.1111/j.1556-4029.2010.01684.x
  375. Brandt, Luise Ørsted; Tranekjer, Lena Diana; Mannering, Ulla; Ringgaard, Maj; Frei, Karin Margarita; Willerslev, Eske; Gleba, Margarita; Gilbert, M. Thomas P.. "Characterising the potential of sheep wool for ancient DNA analyses". Archaeological and Anthropological Sciences (2011): 1-13. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000208772500006&KeyUID=WOS:000208772500006.
    10.1007/s12520-011-0055-2
  376. Campos, Paula F. P. F.; Gilbert, Thomas M. P. T. M.. "DNA extraction from keratin and chitin". Methods in molecular biology (Clifton, N.J.) 840 (2011): 43-49. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000321877600007&KeyUID=WOS:000321877600007.
    10.1007/978-1-61779-516-9_6
  377. Skoglund, P.; Gotherstrom, A.; Jakobsson, M.. "Estimation of Population Divergence Times from Non-Overlapping Genomic Sequences: Examples from Dogs and Wolves". Molecular biology and evolution 28 4 (2011): 1505-1517. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000288556200016&KeyUID=WOS:000288556200016.
    10.1093/molbev/msq342
  378. Foote, Andrew D.; Vilstrup, Julia T.; de Stephanis, Renaud; Verborgh, Philippe; Nielsen, Sandra C. Abel; Deaville, Robert; Kleivane, Lars; et al. "Genetic differentiation among North Atlantic killer whale populations". Molecular Ecology 20 3 (2011): 629-641. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000286254700015&KeyUID=WOS:000286254700015.
    10.1111/j.1365-294X.2010.04957.x
  379. Lalueza-Fox, Carles; Rosas, Antonio; Estalrrich, Almudena; Gigli, Elena; Campos, Paula F.; Garcia-Tabernero, Antonio; Garcia-Vargas, Samuel; et al. "Genetic evidence for patrilocal mating behavior among Neandertal groups". Proceedings of the National Academy of Sciences of the United States of America 108 1 (2011): 250-253. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000285915000048&KeyUID=WOS:000285915000048.
    10.1073/pnas.1011553108
  380. Kampmann, Marie-Louise; Fordyce, Sarah L.; Avila-Arcos, Maria C.; Rasmussen, Morten; Willerslev, Eske; Nielsen, Lars P.; Gilbert, M. Thomas P.. "A simple method for the parallel deep sequencing of full influenza A genomes". Journal of Virological Methods 178 1-2 (2011): 243-248. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000297451600035&KeyUID=WOS:000297451600035.
    10.1016/j.jviromet.2011.09.001
  381. Bruhn, C.A.W.; Gilbert, M.T.P.. "HIV-2 down, HIV-1 to go? Understanding the possibilities of treatment as prevention". The Lancet Infectious Diseases 11 4 (2011): 260-261. http://www.scopus.com/inward/record.url?eid=2-s2.0-79953063723&partnerID=MN8TOARS.
    10.1016/S1473-3099(11)70037-8
  382. Rockenbauer, E.; Holgersson, M.B.; Fordyce, S.L.; Arcos, M.C.T.; Børsting, C.; Hansen, A.J.; Frank-Hansen, R.; et al. "Sequences of microvariant/" off-ladder" STR alleles". Forensic Science International: Genetics Supplement Series 3 1 (2011): http://www.scopus.com/inward/record.url?eid=2-s2.0-82455192341&partnerID=MN8TOARS.
    10.1016/j.fsigss.2011.08.102
  383. Charlier, Philippe; Huynh-Charlier, Isabelle; Poupon, Joel; Keyser, Christine; Lancelot, Eloise; Favier, Dominique; Vignal, Jean-Noel; et al. "Christmas 2010: History Multidisciplinary medical identification of a French king's head (Henri IV)". British Medical Journal 341 (2010): http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000285552200010&KeyUID=WOS:000285552200010.
    10.1136/bmj.c6805
  384. Campos, Paula F.; Sher, Andrei; Mead, Jim I.; Tikhonov, Alexei; Buckley, Michael; Collins, Matthew; Willerslev, Eske; Gilbert, M. Thomas P.. "Clarification of the taxonomic relationship of the extant and extinct ovibovids, Ovibos, Praeovibos, Euceratherium and Bootherium". Quaternary Science Reviews 29 17-18 (2010): 2123-2130. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000280974300014&KeyUID=WOS:000280974300014.
    10.1016/j.quascirev.2010.05.006
  385. Morin, P. A.; Archer, F. I.; Foote, A. D.; Vilstrup, J.; Allen, E. E.; Wade, P.; Durban, J.; et al. "Complete mitochondrial genome phylogeographic analysis of killer whales (Orcinus orca) indicates multiple species". Genome research (2010): 1-10. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000279404700005&KeyUID=WOS:000279404700005.
    10.1101/gr.102954.109
  386. Oskam, Charlotte L.; Haile, James; Mclay, Emma; Rigby, Paul; Allentoft, Morten E.; Olsen, Maia E.; Bengtsson, Camilla; et al. "Fossil avian eggshell preserves ancient DNA". Proceedings of the Royal Society B-Biological Sciences 277 1690 (2010): 1991-2000. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000278056400007&KeyUID=WOS:000278056400007.
    10.1098/rspb.2009.2019
  387. Campos, Paula F.; Willerslev, Eske; Mead, Jim I.; Hofreiter, Michael; Gilbert, M. Thomas P.. "Molecular identification of the extinct mountain goat, Oreamnos harringtoni (Bovidae)". Boreas 39 1 (2010): 18-23. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000273015400002&KeyUID=WOS:000273015400002.
    10.1111/j.1502-3885.2009.00111.x
  388. Charlier, P.; Poupon, J.; Eb, A.; De Mazancourt, P.; Gilbert, T.; Huynh-Charlier, I.; Loublier, Y.; et al. "The 'relics of Joan of Arc': A forensic multidisciplinary analysis". Forensic Science International 194 1-3 (2010): E9-E15. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000273985900024&KeyUID=WOS:000273985900024.
    10.1016/j.forsciint.2009.09.006
  389. Rodriguez, Maria C. Suarez; Edsgärd, Daniel; Hussain, Syed S.; Alquezar, David; Rasmussen, Morten; Gilbert, Thomas; Nielsen, Bjørn H.; Bartels, Dorothea; Mundy, John. "Transcriptomes of the desiccation-tolerant resurrection plant Craterostigma plantagineum". The Plant journal : for cell and molecular biology 63 2 (2010): 212-228. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000279750800004&KeyUID=WOS:000279750800004.
    10.1111/j.1365-313X.2010.04243.x
  390. Cappellini, Enrico; Gilbert, M. Thomas P.; Geuna, Filippo; Fiorentino, Girolamo; Hall, Allan; Thomas-Oates, Jane; Ashton, Peter D.; et al. "A multidisciplinary study of archaeological grape seeds". Naturwissenschaften 97 2 (2010): 205-217. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000274041100010&KeyUID=WOS:000274041100010.
    10.1007/s00114-009-0629-3
  391. Lira, Jaime; Linderholm, Anna; Olaria, Carmen; Durling, Mikael Brandstrom; Gilbert, M. Thomas P.; Ellegren, Hans; Willerslev, Eske; et al. "Ancient DNA reveals traces of Iberian Neolithic and Bronze Age lineages in modern Iberian horses". Molecular Ecology 19 1 (2010): 64-78. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000273005800009&KeyUID=WOS:000273005800009.
    10.1111/j.1365-294X.2009.04430.x
  392. Campos, Paula F.; Kristensen, Tommy; Orlando, Ludovic; Sher, Andrei; Kholodova, Marina V.; Gotherstrom, Anders; Hofreiter, Michael; et al. "Ancient DNA sequences point to a large loss of mitochondrial genetic diversity in the saiga antelope (Saiga tatarica) since the Pleistocene". Molecular Ecology 19 22 (2010): 4863-4875. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000283986700005&KeyUID=WOS:000283986700005.
    10.1111/j.1365-294X.2010.04826.x
  393. Rasmussen, Morten; Li, Yingrui; Lindgreen, Stinus; Pedersen, Jakob Skou; Albrechtsen, Anders; Moltke, Ida; Metspalu, Mait; et al. "Ancient human genome sequence of an extinct Palaeo-Eskimo". Nature 463 7282 (2010): 757-762. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000274394300029&KeyUID=WOS:000274394300029.
    10.1038/nature08835
  394. Ho, Simon Y. W.; Gilbert, M. Thomas P.. "Ancient mitogenomics". Mitochondrion 10 1 (2010): 1-11. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000273673100001&KeyUID=WOS:000273673100001.
    10.1016/j.mito.2009.09.005
  395. Schnell, Ida Baerholm; Fraser, Magdalena; Willerslev, Eske; Gilbert, M. Thomas P.. "Characterisation of insect and plant origins using DNA extracted from small volumes of bee honey". Arthropod-Plant Interactions 4 2 (2010): 107-116. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000277541300004&KeyUID=WOS:000277541300004.
    10.1007/s11829-010-9089-0
  396. Campos, P.F.; Willerslev, E.; Sher, A.; Orlando, L.; Axelsson, E.; Tikhonov, A.; Aaris-Sørensen, K.; et al. "Ancient DNA analyses exclude humans as the driving force behind late Pleistocene musk ox (Ovibos moschatus) population dynamics". Proceedings of the National Academy of Sciences of the United States of America 107 12 (2010): 5675-5680. http://www.scopus.com/inward/record.url?eid=2-s2.0-77950437916&partnerID=MN8TOARS.
    10.1073/pnas.0907189107
  397. Katzourakis, A.; Gifford, R.J.; Tristem, M.; Gilbert, M.T.P.; Pybus, O.G.. "Paleovirology reveals the macroevolution of complex retroviruses". Retrovirology 6 SUPPL. 2 (2009): http://www.scopus.com/inward/record.url?eid=2-s2.0-71049143876&partnerID=MN8TOARS.
  398. Martin Bay Hebsgaard; M Thomas P Gilbert; Jette Arneborg Pedersen; Patricia Heyn; Morten Erik Allentoft; Michael Bunce; Kasper Munch; Charles Schweger; Eske Willerslev. "The Farm beneath the Sand". Antiquity 83 (2009): 430-444. https://curis.ku.dk/portal/en/publications/the-farm-beneath-the-sand(5336e2e0-25f7-11df-8ed1-000ea68e967b).html.
  399. Jaco Weinstock; M Thomas P Gilbert; Eske Willerslev. "The late Pleistocene distribution of vicunas (Vicugna vicugna) and the "extinction" of the gracile Llama ("Lama gracilis")". Quaternary Science Reviews 28 (2009): 1369-1373. https://curis.ku.dk/portal/en/publications/the-late-pleistocene-distribution-of-vicunas-vicugna-vicugna-and-the-extinction-of-the-gracile-llama-lama-gracilis(541573e0-2b59-11df-8ed1-000ea68e967b).html.
  400. Katzourakis, Aris; Gifford, Robert J.; Tristem, Michael; Gilbert, M. Thomas P.; Pybus, Oliver G.. "Macroevolution of Complex Retroviruses". Science 325 5947 (2009): 1512-1512. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000269887900029&KeyUID=WOS:000269887900029.
    10.1126/science.1174149
  401. Thomsen, Philip Francis; Elias, Scott; Gilbert, M. Thomas P.; Haile, James; Munch, Kasper; Kuzmina, Svetlana; Froese, Duane G.; et al. "Non-Destructive Sampling of Ancient Insect DNA". Plos One 4 4 (2009): http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000265500600013&KeyUID=WOS:000265500600013.
    10.1371/journal.pone.0005048
  402. King, Gary A.; Gilbert, M. Thomas P.; Willerslev, Eske; Collins, Matthew J.; Kenward, Harry. "Recovery of DNA from archaeological insect remains: first results, problems and potential". Journal of Archaeological Science 36 5 (2009): 1179-1183. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000264949100009&KeyUID=WOS:000264949100009.
    10.1016/j.jas.2009.01.006
  403. Rasmussen, Morten; Cummings, Linda Scott; Gilbert, M. Thomas P.; Bryant, Vaughn; Smith, Colin; Jenkins, Dennis L.; Willerslev, Eske. "Response to Comment by Goldberg et al. on "DNA from Pre-Clovis Human Coprolites in Oregon, North America"". Science 325 5937 (2009): http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000267802000025&KeyUID=WOS:000267802000025.
    10.1126/science.1167672
  404. Gilbert, M. Thomas P.; Jenkins, Dennis L.; Higham, Thomas F. G.; Rasmussen, Morten; Malmstrom, Helena; Svensson, Emma M.; Sanchez, Juan J.; et al. "Response to Comment by Poinar et al. on "DNA from Pre-Clovis Human Coprolites in Oregon, North America"". Science 325 5937 (2009): http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000267802000023&KeyUID=WOS:000267802000023.
    10.1126/science.1168457
  405. Weinstock, Jaco; Shapiro, Beth; Prieto, Alfredo; Carlos Marin, Juan; Gonzalez, Benito A.; Gilbert, M. Thomas P.; Willersleva, Eske. "The Late Pleistocene distribution of vicunas (Vicugna vicugna) and the "extinction" of the gracile llama ("Lama gracilis"): New molecular data". Quaternary Science Reviews 28 15-16 (2009): 1369-1373. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000268048900001&KeyUID=WOS:000268048900001.
    10.1016/j.quascirev.2009.03.008
  406. Miller, Webb; Drautz, Daniela I.; Janecka, Jan E.; Lesk, Arthur M.; Ratan, Aakrosh; Tomsho, Lynn P.; Packard, Mike; et al. "The mitochondrial genome sequence of the Tasmanian tiger (Thylacinus cynocephalus)". Genome Research 19 2 (2009): 213-220. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000263132600005&KeyUID=WOS:000263132600005.
    10.1101/gr.082628.108
  407. Hebsgaard, Martin B.; Gilbert, M. Thomas P.; Arneborg, Jette; Heyn, Patricia; Allentoft, Morten E.; Bunce, Michael; Munch, Kasper; Schweger, Charles; Willerslev, Eske. "'The Farm Beneath the Sand' - an archaeological case study on ancient 'dirt' DNA". Antiquity 83 320 (2009): 430-444. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000267519000012&KeyUID=WOS:000267519000012.
  408. Gigli, Elena; Rasmussen, Morten; Civit, Sergi; Rosas, Antonio; de la Rasilla, Marco; Fortea, Javier; Gilbert, M. Thomas P.; Willerslev, Eske; Lalueza-Fox, Carles. "An improved PCR method for endogenous DNA retrieval in contaminated Neandertal samples based on the use of blocking primers". Journal of Archaeological Science 36 12 (2009): 2676-2679. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000271796600008&KeyUID=WOS:000271796600008.
    10.1016/j.jas.2009.08.004
  409. Willerslev, Eske; Gilbert, M. Thomas P.; Binladen, Jonas; Ho, Simon Y. W.; Campos, Paula F.; Ratan, Aakrosh; Tomsho, Lynn P.; et al. "Analysis of complete mitochondrial genomes from extinct and extant rhinoceroses reveals lack of phylogenetic resolution". Bmc Evolutionary Biology 9 (2009): http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000267757500001&KeyUID=WOS:000267757500001.
    10.1186/1471-2148-9-95
  410. Malmstrom, Helena; Gilbert, M. Thomas P.; Thomas, Mark G.; Brandstrom, Mikael; Stora, Jan; Molnar, Petra; Andersen, Pernille K.; et al. "Ancient DNA Reveals Lack of Continuity between Neolithic Hunter-Gatherers and Contemporary Scandinavians". Current Biology 19 20 (2009): 1758-1762. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000271498400034&KeyUID=WOS:000271498400034.
    10.1016/j.cub.2009.09.017
  411. Haile, James; Froese, Duane G.; MacPhee, Ross D. E.; Roberts, Richard G.; Arnold, Lee J.; Reyes, Alberto V.; Rasmussen, Morten; et al. "Ancient DNA reveals late survival of mammoth and horse in interior Alaska". Proceedings of the National Academy of Sciences of the United States of America 106 52 (2009): 22352-22357. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000273178700057&KeyUID=WOS:000273178700057.
    10.1073/pnas.0912510106
  412. Mikkelsen, Martin; Rockenbauer, Eszter; Wã Chter, Andrea; Fendt, Liane; Zimmermann, Bettina; Parson, Walther; Nielsen, Sandra Abel; et al. "Application of full mitochondrial genome sequencing using 454 GS FLX pyrosequencing". Forensic Science International: Genetics Supplement Series (2009): 1-2.
    papers2://publication/doi/10.1016/j.fsigss.2009.09.028
  413. Foote, Andrew D.; Newton, Jason; Piertney, Stuart B.; Willerslev, Eske; Gilbert, M. Thomas P.. "Ecological, morphological and genetic divergence of sympatric North Atlantic killer whale populations". Molecular Ecology 18 24 (2009): 5207-5217. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000272452700019&KeyUID=WOS:000272452700019.
    10.1111/j.1365-294X.2009.04407.x
  414. Allentoft, Morten E.; Schuster, Stephan C.; Holdaway, Richard N.; Hale, Marie L.; McLay, Emma; Oskam, Charlotte; Gilbert, M. Thomas P.; et al. "Identification of microsatellites from an extinct moa species using high-throughput (454) sequence data". Biotechniques 46 3 (2009): 195-+. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000266095800008&KeyUID=WOS:000266095800008.
    10.2144/000113086
  415. Gary Andrew King; M Thomas P Gilbert; Eske Willerslev; Matthew Collins; Harry Kenward. "Recovery of DNA from archaeological insect remains: first results, problems and potential". Journal of Archaeological Science 36 (2009): 1179-1183. https://curis.ku.dk/portal/en/publications/recovery-of-dna-from-archaeological-insect-remains-first-results-problems-and-potential(b13f17b0-2b59-11df-8ed1-000ea68e967b).html.
  416. Gilbert, M. Thomas P.; Kivisild, Toomas; Gronnow, Bjarne; Andersen, Pernille K.; Metspalu, Ene; Reidla, Maere; Tamm, Erika; et al. "Paleo-Eskimo mtDNA genome reveals matrilineal discontinuity in Greenland". Science 320 5884 (2008): 1787-1789. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000257121200042&KeyUID=WOS:000257121200042.
    10.1126/science.1159750
  417. Melchior, L.; Gilbert, M. T. P.; Kivisild, T.; Lynnerup, N.; Dissingl, J.. "Rare mtDNA haplogroups and genetic differences in rich and poor Danish iron-age villages". American Journal of Physical Anthropology 135 2 (2008): 206-215. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000252345400008&KeyUID=WOS:000252345400008.
    10.1002/ajpa.20721
  418. Worobey, M.; Pitchenik, A. E.; Gilbert, M. T. P.; Wlasiuk, G.; Rambaut, A.. "Reply to Pape et al: The phylogeography of HIV-1 group M subtype B". Proceedings of the National Academy of Sciences (2008):
    papers2://publication/uuid/9ECDEFB5-616E-4CCF-8259-65F3C343E6E7
  419. Gilbert, M. Thomas P.; Miller, Webb; Schuster, Stephan C.. "Response to Comment on "Whole-Genome Shotgun Sequencing of Mitochondria from Ancient Hair Shafts"". Science 322 5903 (2008): http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000260674100019&KeyUID=WOS:000260674100019.
    10.1126/science.1158565
  420. Axelsson, Erik; Willerslev, Eske; Gilbert, M. Thomas P.; Nielsen, Rasmus. "The effect of ancient DNA damage on inferences of demographic histories". Molecular Biology and Evolution 25 10 (2008): 2181-2187. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000259327900010&KeyUID=WOS:000259327900010.
    10.1093/molbev/msn163
  421. Malmstrom, Helena; Vila, Carles; Gilbert, M. Thomas P.; Stora, Jan; Willerslev, Eske; Holmlund, Gunilla; Gotherstrom, Anders. "Barking up the wrong tree: Modern northern European dogs fail to explain their origin". Bmc Evolutionary Biology 8 (2008): http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000254663500001&KeyUID=WOS:000254663500001.
    10.1186/1471-2148-8-71
  422. Buckley, Mike; Walker, Angela; Ho, Simon Y. W.; Yang, Yue; Smith, Colin; Ashton, Peter; Oates, Jane Thomas; et al. "Comment on "protein sequences from mastodon and Tyrannosaurus rex revealed by mass spectrometry"". Science 319 5859 (2008): http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000252084000011&KeyUID=WOS:000252084000011.
    10.1126/science.1147046
  423. Worobey, Michael; Gemmel, Marlea; Teuwen, Dirk E.; Haselkorn, Tamara; Kunstman, Kevin; Bunce, Michael; Muyembe, Jean-Jacques; et al. "Direct evidence of extensive diversity of HIV-1 in Kinshasa by 1960". Nature 455 7213 (2008): 661-U57. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000259639700046&KeyUID=WOS:000259639700046.
    10.1038/nature07390
  424. Gilbert, M. Thomas P.; Jenkins, Dennis L.; Gotherstrom, Anders; Naveran, Nuria; Sanchez, Juan J.; Hofreiter, Michael; Thomsen, Philip Francis; et al. "DNA from pre-Clovis human coprolites in Oregon, North America". Science 320 5877 (2008): 786-789. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000255644400038&KeyUID=WOS:000255644400038.
    10.1126/science.1154116
  425. Wyatt, Kelly B.; Campos, Paula F.; Gilbert, M. Thomas P.; Kolokotronis, Sergios-Orestis; Hynes, Wayne H.; DeSalle, Rob; Daszak, Peter; MacPhee, Ross D. E.; Greenwood, Alex D.. "Historical Mammal Extinction on Christmas Island (Indian Ocean) Correlates with Introduced Infectious Disease". Plos One 3 11 (2008): http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000265134400002&KeyUID=WOS:000265134400002.
    10.1371/journal.pone.0003602
  426. Gilbert, M. Thomas P.; Drautz, Daniela I.; Lesk, Arthur M.; Ho, Simon Y. W.; Qi, Ji; Ratan, Aakrosh; Hsu, Chih-Hao; et al. "Intraspecific phylogenetic analysis of Siberian woolly mammoths using complete mitochondrial genomes". Proceedings of the National Academy of Sciences of the United States of America 105 24 (2008): 8327-8332. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000257011200030&KeyUID=WOS:000257011200030.
    10.1073/pnas.0802315105
  427. Michael Worobey; Arthur E Pitchenik; M Thomas P Gilbert; Gabriela Wlasiuk; Andrew Rambaut. "Reply to Pape et al.: the phylogeography of HIV-1 group M subtype B.". Proceedings of the National Academy of Science of the United States of America 105 12 (2008): E16-E16. https://curis.ku.dk/portal/en/publications/reply-to-pape-et-al-the-phylogeography-of-hiv1-group-m-subtype-b(22851270-1492-11dd-bee9-02004c4f4f50).html.
    10.1073/pnas.0712128105
  428. Vives, S.; Gilbert, M.T.; Arenas, C.; Gigli, E.; Lao, O.; Lalueza-Fox, C.. "Statistical analysis of post mortem DNA damage-derived miscoding lesions in Neandertal mitochondrial DNA". BMC Research Notes 1 (2008): http://www.scopus.com/inward/record.url?eid=2-s2.0-77955777521&partnerID=MN8TOARS.
    10.1186/1756-0500-1-40
  429. Gilbert, Campos Willerslev. "Isolation of DNA from Ancient Samples". Handbook of Nucleic Acids Purification (2008): 1-22.
    papers2://publication/uuid/83AC6F72-A8FC-4321-AE7D-7F61B6D4FED5
  430. Gilbert, Marcus T. P.; Sanchez, Juan J.; Haselkorn, Tamara; Jewell, Laurence D.; Lucas, Sebastian B.; Van Marck, Eric; Borsting, Claus; Morling, Niels; Worobey, Michael. "Multiplex PCR with minisequencing as an effective high-throughput SNP typing method for formalin-fixed tissue". Electrophoresis 28 14 (2007): 2361-2367. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000248390900005&KeyUID=WOS:000248390900005.
    10.1002/elps.200600589
  431. Gilbert, M. Thomas P.; Binladen, Jonas; Miller, Webb; Wiuf, Carsten; Willerslev, Eske; Poinar, Hendrik; Carlson, John E.; Leebens-Mack, James H.; Schuster, Stephan C.. "Recharacterization of ancient DNA miscoding lesions: insights in the era of sequencing-by-synthesis". Nucleic Acids Research 35 1 (2007): 1-10. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000243805800008&KeyUID=WOS:000243805800008.
    10.1093/nar/gkl483
  432. Gilbert, M. Thomas P.; Willerslev, Eske. "Rescuing ancient DNA". Nature Biotechnology 25 8 (2007): 872-874. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000248725800020&KeyUID=WOS:000248725800020.
    10.1038/nbt0807-872
  433. Wilson,; Taylor,; Ceruti,; Chavez,; Reinhard,; Grimes,; Meier, Augenstein; et al. "Stable isotope and DNA evidence for ritual sequences in Inca child sacrifice". Proceedings of the National Academy of Sciences of the United States of America (2007): http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000250373400015&KeyUID=WOS:000250373400015.
    10.1073/pnas.0704276104
  434. Gilbert, M. Thomas P.; Rambaut, Andrew; Wlasiuk, Gabriela; Spira, Thomas J.; Pitchenik, Arthur E.; Worobey, Michael. "The emergence of HIV/AIDS in the Americas and beyond". Proceedings of the National Academy of Sciences of the United States of America 104 47 (2007): 18566-18570. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000251292500041&KeyUID=WOS:000251292500041.
    10.1073/pnas.0705329104
  435. Gilbert, M. Thomas P.; Haselkorn, Tamara; Bunce, Michael; Sanchez, Juan J.; Lucas, Sebastian B.; Jewell, Laurence D.; Van Marck, Eric; Worobey, Michael. "The Isolation of Nucleic Acids from Fixed, Paraffin-Embedded Tissues-Which Methods Are Useful When?". Plos One 2 6 (2007): http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000207451700005&KeyUID=WOS:000207451700005.
    10.1371/journal.pone.0000537
  436. Vuissoz, Annick; Worobey, Michael; Odegaard, Nancy; Bunce, Michael; Machado, Carlos A.; Lynnerup, Niels; Peacock, Elizabeth E.; Gilbert, M. Thomas P.. "The survival of PCR-amplifiable DNA in cow leather". Journal of Archaeological Science 34 5 (2007): 823-829. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000245508800016&KeyUID=WOS:000245508800016.
    10.1016/j.jas.2006.09.002
  437. Kuch, Melanie; Grocke, Darren R.; Knyf, Martin C.; Gilbert, M. Thomas P.; Younghusband, Ban; Young, Terry; Marshall, Ingeborg; et al. "A preliminary analysis of the DNA and diet of the extinct Beothuk: A systematic approach to ancient human DNA". American Journal of Physical Anthropology 132 4 (2007): 594-604. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000245160500013&KeyUID=WOS:000245160500013.
    10.1002/ajpa.20536
  438. Johnson, Sarah Stewart; Hebsgaard, Martin B.; Christensen, Torben R.; Mastepanov, Mikhail; Nielsen, Rasmus; Munch, Kasper; Brand, Tina; et al. "Ancient bacteria show evidence of DNA repair (vol 104, pg 14401, 2007)". Proceedings of the National Academy of Sciences of the United States of America 104 51 (2007): 20635-20635. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000251885000087&KeyUID=WOS:000251885000087.
    10.1073/pnas.0710637105
  439. Willerslev, Eske; Cappellini, Enrico; Boomsma, Wouter; Nielsen, Rasmus; Hebsgaard, Martin B.; Brand, Tina B.; Hofreiter, Michael; et al. "Ancient biomolecules from deep ice cores reveal a forested southern Greenland". Science (New York, NY) 317 5834 (2007): 111-114. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000247776700062&KeyUID=WOS:000247776700062.
    10.1126/science.1141758
  440. Haile, James; Holdaway, Richard; Oliver, Karen; Bunce, Michael; Gilbert, M. Thomas P.; Nielsen, Rasmus; Munch, Kasper; et al. "Ancient DNA chronology within sediment deposits: Are paleobiological reconstructions possible and is DNA leaching a factor?". Molecular Biology and Evolution 24 4 (2007): 982-989. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000245353200011&KeyUID=WOS:000245353200011.
    10.1093/molbev/msm016
  441. Toepf, A. L.; Gilbert, M. T. P.; Fleischer, R. C.; Hoelzel, A. R.. "Ancient human mtDNA genotypes from England reveal lost variation over the last millennium". Biology Letters 3 5 (2007): 550-553. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000249421800028&KeyUID=WOS:000249421800028.
    10.1098/rsbl.2007.0269
  442. Gilbert, M. Thomas P.; Moore, Wendy; Melchior, Linea; Worobey, Michael. "DNA Extraction from Dry Museum Beetles without Conferring External Morphological Damage". Plos One 2 3 (2007): http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000207444700007&KeyUID=WOS:000207444700007.
    10.1371/journal.pone.0000272
  443. Hebsgaard, Martin B.; Wiuf, Carsten; Gilbert, M. Thomas P.; Glenner, Henrik; Willerslev, Eske. "Evaluating neanderthal genetics and phylogeny". Journal of Molecular Evolution 64 1 (2007): 50-60. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000243047800005&KeyUID=WOS:000243047800005.
    10.1007/s00239-006-0017-y
  444. Malmstrom, Helena; Svensson, Emma M.; Gilbert, M. Thomas P.; Willerslev, Eske; Gotherstrom, Anders; Holmlund, Gunilla. "More on contamination: The use of asymmetric molecular behavior to identify authentic ancient human DNA". Molecular Biology and Evolution 24 4 (2007): 998-1004. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000245353200013&KeyUID=WOS:000245353200013.
    10.1093/molbev/msm015
  445. Binladen, Jonas; Gilbert, M. Thomas P.; Campos, Paula F.; Willerslev, Eske. "5 '-Tailed sequencing primers improve sequencing quality of PCR products". Biotechniques 42 2 (2007): 172-+. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000248949000017&KeyUID=WOS:000248949000017.
    10.2144/000112316
  446. Binladen, Jonas; Gilbert, M. Thomas P.; Willerslev, Eske. "800000 year old mammoth DNA, modern elephant DNA or PCR artefact?". Biology Letters 3 1 (2007): 55-56. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000243485800016&KeyUID=WOS:000243485800016.
    10.1098/rsbl.2006.0537
  447. Gilbert, M.T.P.; Djurhuus, D.; Melchior, L.; Lynnerup, N.; Worobey, M.; Wilson, A.S.; Andreasen, C.; Dissing, J.. "Erratum: mtDNA from hair and nail clarifies the genetic relationship of the 15th century Qilakitsoq Inuit mummies (American Journal of Physical Anthropology (2007) 133, (847-853))". American Journal of Physical Anthropology 133 4 (2007): http://www.scopus.com/inward/record.url?eid=2-s2.0-34547431146&partnerID=MN8TOARS.
    10.1002/ajpa.20675
  448. Johnson, S.S.; Hebsgaard, M.B.; Christensen, T.R.; Mastepanov, M.; Nielsen, R.; Munch, K.; Brand, T.; et al. "Ancient bacteria show evidence of DNA repair". Proceedings of the National Academy of Sciences of the United States of America 104 36 (2007): 14401-14405. http://www.scopus.com/inward/record.url?eid=2-s2.0-35448994420&partnerID=MN8TOARS.
    10.1073/pnas.0706787104
  449. A. Vuissoz; M. Worobey; N. Odegaard; M. Bunce; C.A. Machado; Niels Lynnerup; E.E. Peacock; M Thomas P Gilbert. "The survival of PCR-amplifiable DNA in cow leather15". Journal of Archaeological Science 34 5 (2007): 823-829. https://curis.ku.dk/portal/en/publications/the-survival-of-pcramplifiable-dna-in-cow-leather15(5ddedc00-20ec-11dd-bc23-000ea68e967b).html.
  450. Gilbert, M. Thomas P.; Djurhuus, Durita; Melchior, Linea; Lynnerup, Niels; Worobey, Michael; Wilson, Andrew S.; Andreasen, Claus; Dissing, Jørgen. "mtDNA from hair and nail clarifies the genetic relationship of the 15th century Qilakitsoq Inuit mummies". American Journal of Physical Anthropology 133 2 (2007): 847-853. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000246657300012&KeyUID=WOS:000246657300012.
    10.1002/ajpa.20602
  451. Binladen, Jonas; Gilbert, M. Thomas P.; Bollback, Jonathan P.; Panitz, Frank; Bendixen, Christian; Nielsen, Rasmus; Willerslev, Eske. "The Use of Coded PCR Primers Enables High-Throughput Sequencing of Multiple Homolog Amplification Products by 454 Parallel Sequencing". Plos One 2 2 (2007): http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000207444400002&KeyUID=WOS:000207444400002.
    10.1371/journal.pone.0000197
  452. Gilbert, M. Thomas P.; Tomsho, Lynn P.; Rendulic, Snjezana; Packard, Michael; Drautz, Daniela I.; Sher, Andrei; Tikhonov, Alexei; et al. "Whole-genome shotgun sequencing of mitochondria from ancient hair shafts". Science 317 5846 (2007): 1927-1930. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000249764300041&KeyUID=WOS:000249764300041.
    10.1126/science.1146971
  453. Gilbert, M.T.; Willerslev, E.. "Authenticity in ancient DNA studies.". Medicina nei secoli 18 3 (2006): 701-723. http://www.scopus.com/inward/record.url?eid=2-s2.0-38949163103&partnerID=MN8TOARS.
  454. Topf, AL; Gilbert, MTP; Dumbacher, JP; Hoelzel, AR. "Tracing the phylogeography of human populations in Britain based on 4th-11th century mtDNA genotypes". Molecular Biology and Evolution 23 1 (2006): 152-161. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000233843900018&KeyUID=WOS:000233843900018.
    10.1093/molbev/msj013
  455. Sampietro, Maria Lourdes; Gilbert, M. Thomas P.; Lao, Oscar; Caramelli, David; Lari, Martina; Bertranpetit, Jaume; Lalueza-Fox, Carles. "Tracking down human contamination in ancient human teeth". Molecular Biology and Evolution 23 9 (2006): 1801-1807. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000239905100019&KeyUID=WOS:000239905100019.
    10.1093/molbev/msl047
  456. Gilbert, M. T. P.; Willerslev, E.. "Ancient Plant DNA". Encyclopedia of Quaternary Sciences (2006):
    papers2://publication/uuid/5609DAA9-D42B-4B56-A260-A1C1142E0F91
  457. Binladen, J; Wiuf, C; Gilbert, MTP; Bunce, M; Barnett, R; Larson, G; Greenwood, AD; et al. "Assessing the fidelity of ancient DNA sequences amplified from nuclear genes". Genetics 172 2 (2006): 733-741. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000236178800005&KeyUID=WOS:000236178800005.
    10.1534/genetics.105.049718
  458. Gilbert, M. T. P.; Janaway, R. C.; Tobin, D. J.; Cooper, A.; Wilson, A. S.. "Histological correlates of post mortem mitochondrial DNA damage in degraded hair". Forensic Science International 156 2-3 (2006): 201-207. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000235196200018&KeyUID=WOS:000235196200018.
    10.1016/j.forsciint.2005.02.019
  459. Gilbert, MTP; Hansen, AJ; Willerslev, E; Turner-Walker, G; Collins, M. "Insights into the processes behind the contamination of degraded human teeth and bone samples with exogenous sources of DNA". International Journal of Osteoarchaeology 16 2 (2006): 156-164. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000237365200007&KeyUID=WOS:000237365200007.
    10.1002/oa.832
  460. Shapiro, Beth; Rambaut, Andrew; Gilbert, M. Thomas P.. "No proof that typhoid caused the Plague of Athens (a reply to Papagrigorakis et al.)". International Journal of Infectious Diseases 10 4 (2006): 334-335. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000239341400015&KeyUID=WOS:000239341400015.
    10.1016/j.ijid.2006.02.006
  461. Gilbert, MTP; Menez, L; Janaway, RC; Tobin, DJ; Cooper, A; Wilson, AS. "Resistance of degraded hair shafts to contaminant DNA". Forensic Science International 156 2-3 (2006): 208-212. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000235196200019&KeyUID=WOS:000235196200019.
    10.1016/j.forsciint.2005.02.021
  462. Gilbert, MTP; Shapiro, B; Drummond, A; Cooper, A. "Post-mortem DNA damage hotspots in Bison (Bison bison) provide evidence for both damage and mutational hotspots in human mitochondrial DNA". Journal of Archaeological Science 32 7 (2005): 1053-1060. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000229879900009&KeyUID=WOS:000229879900009.
    10.1016/j.jas.2005.02.006
  463. Gilbert, MTP; Bandelt, HJ; Hofreiter, M; Barnes, I. "Assessing ancient DNA studies". Trends in Ecology & Evolution 20 10 (2005): 541-544. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000232606900005&KeyUID=WOS:000232606900005.
    10.1016/j.tree.2005.07.005
  464. Lydolph, MC; Jacobsen, J; Arctander, P; Gilbert, MTP; Gilichinsky, DA; Hansen, AJ; Willerslev, E; Lange, L. "Beringian paleoecology inferred from permafrost-preserved fungal DNA". Applied and Environmental Microbiology 71 2 (2005): 1012-1017. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000227043400053&KeyUID=WOS:000227043400053.
    10.1128/AEM.71.2.1012-1017.2005
  465. Gilbert, MTP; Rudbeck, L; Willerslev, E; Hansen, AJ; Smith, C; Penkman, KEH; Prangenberg, K; et al. "Biochemical and physical correlates of DNA contamination in archaeological human bones and teeth excavated at Matera, Italy". Journal of Archaeological Science 32 5 (2005): 785-793. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000228307700012&KeyUID=WOS:000228307700012.
    10.1016/j.jas.2004.12.008
  466. Machado, Carlos A.; Robbins, Nancy; Gilbert, M. Thomas P.; Herre, Edward Allen. "Critical review of host specificity and its coevolutionary implications in the fig/fig-wasp mutualism". Proceedings of the National Academy of Sciences of the United States of America 102 Suppl (2005): 6558-6565. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000229023700008&KeyUID=WOS:000229023700008.
    10.1073/pnas.0501840102
  467. Gilbert, MTP; Barnes, I; Collins, MJ; Smith, C; Eklund, J; Goudsmit, J; Poinar, H; Cooper, A. "Long-term survival of ancient DNA in Egypt: Response to Zink and Nerlich (2003)". American Journal of Physical Anthropology 128 1 (2005): 110-114. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000231617400010&KeyUID=WOS:000231617400010.
    10.1002/ajpa.20045
  468. Rudbeck, L; Gilbert, MTP; Willerslev, E; Hansen, AJ; Lynnerup, N; Christensen, T; Dissing, J. "mtDNA analysis of human remains from an early Danish Christian cemetery". American Journal of Physical Anthropology 128 2 (2005): 424-429. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000232239800017&KeyUID=WOS:000232239800017.
    10.1002/ajpa.20294
  469. Metspalu, M; Kivisild, T; Metspalu, E; Parik, J; Hudjashov, G; Kaldma, K; Serk, P; et al. "Most of the extant mtDNA boundaries in South and Southwest Asia were likely shaped during the initial settlement of Eurasia by anatomically modern humans". Bmc Genetics 5 (2004): http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000223865600001&KeyUID=WOS:000223865600001.
    10.1186/1471-2156-5-26
  470. Gilbert, MTP; Cuccui, J; White, W; Lynnerup, N; Titball, RW; Cooper, A; Prentice, MB. "Response to Drancourt and Raoult". Microbiology-Sgm 150 (2004): 264-265. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000188841500003&KeyUID=WOS:000188841500003.
    10.1099/mic.0.26959-0
  471. Shapiro, B; Drummond, AJ; Rambaut, A; Wilson, MC; Matheus, PE; Sher, AV; Pybus, OG; et al. "Rise and fall of the Beringian steppe bison". Science 306 5701 (2004): 1561-1565. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000225442700061&KeyUID=WOS:000225442700061.
    10.1126/science.1101074
  472. Lalueza-Fox, C; Sampietro, ML; Gilbert, MTP; Castri, L; Facchini, F; Pettener, D; Bertranpetit, J. "Unravelling migrations in the steppe: mitochondrial DNA sequences from ancient Central Asians". Proceedings of the Royal Society B-Biological Sciences 271 1542 (2004): 941-947. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000221199600008&KeyUID=WOS:000221199600008.
    10.1098/rspb.2004.2698
  473. Prentice, M; Gilbert, T; Cooper, A. "Was the Black Death caused by Yersinia pestis?". Lancet Infectious Diseases 4 2 (2004): 72-72. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000188766100015&KeyUID=WOS:000188766100015.
    10.1016/S1473-3099(04)00923-5
  474. M Thomas P Gilbert; J Cuccui; W White; Niels Lynnerup; RW Titball; A. Cooper; MB Prentice. "Abscence of Yersinia pestis-specific dna in human teeth from five European excavations of putative plague victims". Microbiology 150 2 (2004): 341-354. https://curis.ku.dk/portal/en/publications/abscence-of-yersinia-pestisspecific-dna-in-human-teeth-from-five-european-excavations-of-putative-plague-victims(ca346e00-74c3-11db-bee9-02004c4f4f50).html.
  475. Drancourt, M.; Raoult, D.; Gilbert, M.T.P.; Cuccui, J.; White, W.; Lynnerup, N.; Titball, R.W.; Cooper, A.; Prentice, M.B.. "Molecular detection of Yersinia pestis in dental pulp". Microbiology 150 2 (2004): 263-265. http://www.scopus.com/inward/record.url?eid=2-s2.0-1242296239&partnerID=MN8TOARS.
  476. Gilbert, MTP; Cuccui, J; White, W; Lynnerup, N; Titball, RW; Cooper, A; Prentice, MB. "Absence of Yersinia pestis-specific DNA in human teeth from five European excavations of putative plague victims". Microbiology-Sgm 150 (2004): 341-354. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000188841500012&KeyUID=WOS:000188841500012.
    10.1099/mic.0.26594-0
  477. Gilbert, MTP; Wilson, AS; Bunce, M; Hansen, AJ; Willerslev, E; Shapiro, B; Higham, TFG; et al. "Ancient mitochondrial DNA from hair". Current Biology 14 12 (2004): R463-R464. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000222305500007&KeyUID=WOS:000222305500007.
    10.1016/j.cub.2004.06.008
  478. Gilbert, MTP; Hansen, AJ; Willerslev, E; Rudbeck, L; Barnes, I; Lynnerup, N; Cooper, A. "Characterization of genetic miscoding lesions caused by postmortem damage". American Journal of Human Genetics 72 1 (2003): 48-61. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000180186800005&KeyUID=WOS:000180186800005.
    10.1086/345379
  479. Gilbert, MTP; Willerslev, E; Hansen, AJ; Barnes, I; Rudbeck, L; Lynnerup, N; Cooper, A. "Distribution patterns of postmortem damage in human mitochondrial DNA". American Journal of Human Genetics 72 1 (2003): 32-47. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000180186800004&KeyUID=WOS:000180186800004.
    10.1086/345378
  480. Willerslev, E; Hansen, AJ; Binladen, J; Brand, TB; Gilbert, MTP; Shapiro, B; Bunce, M; et al. "Diverse plant and animal genetic records from Holocene and Pleistocene sediments". Science 300 5620 (2003): 791-795. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000182579800049&KeyUID=WOS:000182579800049.
    10.1126/science.1084114
  481. Jaenicke-Despres, V; Buckler, ES; Smith, BD; Gilbert, MTP; Cooper, A; Doebley, J; Paabo, S. "Early allelic selection in maize as revealed by ancient DNA". Science 302 5648 (2003): 1206-1208. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000186544300053&KeyUID=WOS:000186544300053.
    10.1126/science.1089056
  482. Lalueza-Fox, C; Gilbert, MTP; Martinez-Fuentes, AJ; Calafell, F; Bertranpetit, J. "Mitochondrial DNA from pre-Columbian Ciboneys from Cuba and the prehistoric colonization of the Caribbean". American Journal of Physical Anthropology 121 2 (2003): 97-108. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000183084700001&KeyUID=WOS:000183084700001.
    10.1002/ajpa.10236
  483. Endicott, P; Gilbert, MTP; Stringer, C; Lalueza-Fox, C; Willerslev, E; Hansen, AJ; Cooper, A. "The genetic origins of the Andaman Islanders". American Journal of Human Genetics 72 1 (2003): 178-184. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000180186800018&KeyUID=WOS:000180186800018.
    10.1086/345487
Capítulo de livro
  1. M Thomas P Gilbert; Carles Lalueza-Fox. "Palaeogenomics of Extinct and Archaic Hominins". editado por Mark Pollard; Armitage, {Ruth Ann, 647-656. Wiley-Interscience, 2023.
    10.1002/9781119592112.ch32
  2. Paula F. Campos; M Thomas P Gilbert. "DNA extraction from keratin and chitin". 57-63. Humana Press, 2019.
    10.1007/978-1-4939-9176-1_7
  3. Andrew David Foote; M Thomas P Gilbert; Jennifer A. Jackson. "Ecological and evolutionary divergence in whales and dolphins". editado por Murray, {Craig A., 89-112. Nova Science Publishers, 2010.
  4. Thomas, M.; Gilbert, P.. "Postmortem Damage of Mitochondrial DNA". In Human Mitochondrial DNA and the Evolution of Homo sapiens, 91-115. Springer Berlin Heidelberg, 2006.
    10.1007/3-540-31789-9_5
Livro
  1. Charlier, Philippe; Huynh-Charlier, Isabelle; Poupon, Joël; Keyser, Christine; Lancelot, Eloïse; Favier, Dominique; Vignal, Jean-Noël; et al. Multidisciplinary medical identification of a French king's head (Henri IV). 2010.
    papers2://publication/uuid/1F2B862B-0E48-45EF-AEC1-53A385F55105
  2. Gilbert, M.T.P.. Paleogenomics Using the 454 Sequencing Platform. 2008.
    10.1002/9783527625130.ch14
Pré-impressão
  1. Lara C Puetz; Tom O. Delmont; Alex L. Mitchell; Robert Finn; Guojie Zhang; Darya V. Shepeleva; Anastasiya V. Kharlamova; et al. "Gut microbiome community structure correlates with different behavioral phenotypes in the Belyaev farm-fox experiment". 2024. https://doi.org/10.21203/rs.3.rs-4697888/v1.
    10.21203/rs.3.rs-4697888/v1
  2. Sofia Marcos; Iñaki Odriozola; Raphael Eisenhofer; Ostaizka Aizpurua; Joan Tarradas; Garazi Martin; Andone Estonba; et al. "Reduced metabolic capacity of the gut microbiota associates with host growth in broiler chickens". 2023. https://doi.org/10.21203/rs.3.rs-2885808/v1.
    10.21203/rs.3.rs-2885808/v1
  3. Emily L. Cavill; Germán Hernández-Alonso; Rob Ogden; M. Thomas. P. Gilbert. "Never judge a bird by its feathers: genetics unveils the true target of trafficking in morphologically similarCopsychusspecies". 2023. https://doi.org/10.1101/2023.04.14.536889.
    10.1101/2023.04.14.536889
  4. Georgette Femerling; Cock van Oosterhout; Shaohong Feng; Rachel M. Bristol; Guojie Zhang; Jim Groombridge; M. Thomas P. Gilbert; Hernán E. Morales. "Genetic load and adaptive potential of a recovered avian species that narrowly avoided extinction". 2022. https://doi.org/10.1101/2022.12.20.521169.
    10.1101/2022.12.20.521169
  5. Mikkel Skovrind; George Pacheco; Emil Aputsiaq Flindt Christensen; Shyam Gopalakrishnan; Katharina Fietz; Tore Hejl Holm-Hansen; Filipe Garrett Vieira; et al. "Genomic differentiation among European perch in the western Baltic Sea reflects colonisation history and local adaptation". 2022. https://doi.org/10.1101/2022.11.23.516742.
    10.1101/2022.11.23.516742
  6. Jacob Rasmussen; Pia Kiilerich; Rune Waagbø; Erik-Jan Lock; Madsen Lise; M Thomas P Gilbert; Karsten Kristiansen; Morten Limborg. "Hologenomic insights demonstrate co-evolution between an intestinal Mycoplasma and its salmonid host". 2022. https://doi.org/10.21203/rs.3.rs-1814912/v1.
    10.21203/rs.3.rs-1814912/v1
Resumo em conferência
  1. Ashild J. Vagene; Anna Fotakis; Sean D. Denham; Miren Orbegozo; Meaghan Mackie; Jesper Olsen; Enrico Cappellini; Axel Christophersen; M Thomas P Gilbert. "Genomic and proteomic evidence for Mycobacterium leprae in human medieval dental calculus from Trondheim, Norway". 2020.
    10.1002/ajpa.24023
  2. Shahab Sarmashghi; Kristine Bohmann; M Thomas P Gilbert; Vineet Bafna; Siavash Mirarab. "Assembly-free and alignment-free sample identification using genome skims". 2018.
    10.1007/978-3-319-89929-9
  3. Christina Warinner; Jessica Hendy; Camilla Speller; Enrico Cappellini; Roman Fischer; Christian Trachsel; Jette Arneborg; et al. "Direct evidence of milk consumption from ancient human dental calculus". 2015.
    10.1002/ajpa.22718

Outros

Outra produção
  1. How ancient RNA survives and what we can learn from it. 2024. Marc R. Friedländer; M Thomas P Gilbert. https://researchprofiles.ku.dk/en/publications/how-ancient-rna-survives-and-what-we-can-learn-from-it(e619a17d-38dc-49b4-94fb-da76a102283c).html.
    10.1038/s41580-024-00726-y
  2. The potential of aquatic haematophagous, liquidosomatophagous and macrophagous leeches as a tool for iDNA characterisation. 2021. Christina Lynggaard; Alejandro Oceguera-Figueroa; Sebastian Kvist; M Thomas P Gilbert; Kristine Bohmann. https://doi.org/10.1101/2021.05.01.442262.
    10.1101/2021.05.01.442262
  3. The pangenome of the fungal pathogen Neonectria neomacrospora. 2021. Knud Nor Nielsen; Kimmo Sirén; Bent Petersen; Thomas Sicheritz-Pontén; M. Thomas P. Gilbert; Thorfinn Sand Korneliussen; Ole Kim Hansen. https://doi.org/10.1101/2021.03.11.434922.
    10.1101/2021.03.11.434922
  4. Genome-resolved metagenomics suggests a mutualistic relationship between Mycoplasma and salmonid hosts. 2021. Jacob Agerbo Rasmussen; Kasper Rømer Villumsen; David A. Duchêne; Lara Christine Puetz; Tom O. Delmont; Harald Sveier; Kim Præbel; et al. https://doi.org/10.21203/rs.3.rs-269923/v1.
    10.21203/rs.3.rs-269923/v1
  5. Genome-Resolved Metagenomics Suggests A Mutualistic Relationship Between Mycoplasma and Salmonid Hosts. 2020. Jacob Rasmussen; Kasper Villumsen; David Duchêne; Lara Puetz; Tom Delmont; Harald Sveier; Kim Præbel; et al. https://doi.org/10.21203/rs.3.rs-97276/v1.
    10.21203/rs.3.rs-97276/v1
  6. Rapid discovery of novel prophages using biological feature engineering and machine learning. 2020. Kimmo Sirén; Andrew Millard; Bent Petersen; M Thomas P Gilbert; Martha RJ Clokie; Thomas Sicheritz-Pontén. https://doi.org/10.1101/2020.08.09.243022.
    10.1101/2020.08.09.243022
  7. Ancient RNA from Late Pleistocene permafrost and historical canids shows tissue-specific transcriptome survival. 2019. Oliver Smith; Glenn Dunshea; Mikkel-Holger S. Sinding; Sergey Fedorov; Mietje Germonpre; Hervé Bocherens; M.T.P. Gilbert. https://doi.org/10.1101/546820.
    10.1101/546820
  8. hilldiv: an R package for the integral analysis of diversity based on Hill numbers. 2019. Antton Alberdi; M Thomas P Gilbert. https://doi.org/10.1101/545665.
    10.1101/545665
  9. DNA metabarcoding - need for robust experimental designs to draw sound ecological conclusions. 2019. Lucie Zinger; Aurélie Bonin; Inger G. Alsos; Miklós Bálint; Holly Bik; Frédéric Boyer; Anthony A. Chariton; et al. https://curis.ku.dk/portal/en/publications/dna-metabarcoding--need-for-robust-experimental-designs-to-draw-sound-ecological-conclusions(c0e2632e-28e0-41c0-ba70-ecc3be44b351).html.
    10.1111/mec.15060
  10. Host-derived population genomics data provides insights into bacterial and diatom composition of the killer whale skin. 2018. https://doi.org/10.1101/282038.
    10.1101/282038
  11. Early Pleistocene enamel proteome sequences from Dmanisi resolve Stephanorhinus phylogeny. 2018. https://doi.org/10.1101/407692.
    10.1101/407692
  12. A flock of Genomes. 2014. Guojie Zhang; Erich D. Jarvis; M Thomas P Gilbert. https://curis.ku.dk/portal/en/publications/a-flock-of-genomes(126e8560-e6b1-4647-8bb2-e74d56efb2eb).html.
    10.1126/science.346.6215.1308
Atividades

Organização de evento

Nome do evento
Tipo de evento (Tipo de participação)
Instituição / Organização
2024 - Atual 2nd Applied Hologenomics Conference (2024)
2024 - Atual Symposium on Ancient RNA (2024)
2023 - Atual CEH-PSU Symposium on Hologenomics (2023)
2022 - Atual 1st Applied Hologenomics Conference (2022)
2022 - Atual Symposium on Ancient Plant DNA (2022)
2010 - Atual International Symposia of Biomolecular Archaeology IV (2010)
2007 - Atual International Symposium on Ancient DNA (2007)
2002 - Atual Ancient DNA – Damage, Retrieval and Repair (2002)
Distinções

Prémio

2014 Young Scientist Award
Lundbeckfonden, Dinamarca
2003 Wellcome Trust Prize PhD Studentship in Bioarchaeology
Wellcome Foundation Ltd, Reino Unido
2000 Academic Scholar
University of Oxford Oriel College, Reino Unido

Título

2017 Videnskabernes Selskab’s Silver Medal
Kongelige Danske Videnskabernes Selskab, Dinamarca