Identificação
Identificação pessoal
- Nome completo
- Sofia de Pinto e Lobo da Silva Agostinho
Nomes de citação
- Agostinho, Sofia P.
- Sofia, Agostinho
Identificadores de autor
- Ciência ID
- F415-77C3-CB7B
- ORCID iD
- 0000-0002-7254-7916
Endereços de correio eletrónico
- sofia.p.agostinho@tecnico.ulisboa.pt (Profissional)
Moradas
- Instituto de Telecomunicações (IT), Av. Rovisco Pais 1, Torre Norte Piso 10, 1049-001, Lisboa, Lisboa, Portugal (Profissional)
- iBB - Institute for Bioengineering and Biosciences, Instituto Superior Técnico, Universidade de Lisboa, Av. Rovisco Pais, 1049-001, Lisboa, Lisboa, Portugal (Profissional)
Websites
- https://www.linkedin.com/in/sofia-p-agostinho (Profissional)
- https://github.com/SofiaPAgostinho (Académico)
- https://www.researchgate.net/profile/Sofia-P-Agostinho (Académico)
Domínios de atuação
- Ciências da Engenharia e Tecnologias
Idiomas
Idioma | Conversação | Leitura | Escrita | Compreensão | Peer-review |
---|---|---|---|---|---|
Português (Idioma materno) | |||||
Inglês | Utilizador proficiente (C1) | Utilizador proficiente (C1) | Utilizador proficiente (C1) | Utilizador proficiente (C1) | Utilizador proficiente (C1) |
Formação
Grau | Classificação | |
---|---|---|
2023/09/13 - 2027/09/13
Em curso
|
Programa Doutoral em Engenharia Biomédica (Doutoramento)
Universidade de Lisboa Instituto Superior Técnico, Portugal
|
|
2022/09/01 - 2023/08/31
Concluído
|
Diploma de Formação Avançada em Metodologias e Técnicas de Investigação Científica (Pós-Graduação)
Universidade de Lisboa Instituto Superior Técnico, Portugal
|
20/20 |
2022/07/01
Concluído
|
Engenharia Biomédica (Mestrado)
Especialização em Regenerative Medicine and Tissue Engineering
Universidade de Lisboa Instituto Superior Técnico, Portugal
"Unsupervised machine learning approaches for whole transcriptome analysis of human pluripotent stem cell
differentiation into cardiomyocytes" (TESE/DISSERTAÇÃO)
|
17/20 |
2022/03/01
Concluído
|
Machine Learning, Maths & Ethics: Hands-on (MOOC Tecnico course) (Outros)
Universidade de Lisboa Instituto Superior Técnico, Portugal
|
95% |
2021/03/05
Concluído
|
Epigenetics: Foundations (MOOC Tecnico course) (Outros)
Universidade de Lisboa Instituto Superior Técnico, Portugal
|
91% |
2017/09/05 - 2020/07/15
Concluído
|
Ciências de Engenharia - Engenharia Biomédica (Licenciatura)
Universidade de Lisboa Instituto Superior Técnico, Portugal
|
14/20 |
Percurso profissional
Ciência
Categoria Profissional Instituição de acolhimento |
Empregador | |
---|---|---|
2023/11/01 - 2024/08/31 | Investigador (Investigação) | Associação do Instituto Superior Técnico para a Investigação e Desenvolvimento, Portugal |
Universidade de Lisboa Instituto de Bioengenharia e Biociências, Portugal | ||
2022/09/01 - 2023/08/31 | Investigador (Investigação) | Instituto de Telecomunicações Lisboa, Portugal |
Instituto de Telecomunicações Lisboa, Portugal (...) |
Projetos
Bolsa
Designação | Financiadores | |
---|---|---|
2023/11/01 - 2024/08/31 | VitaminSea
22-CM-PT-DG-1-317
Bolseiro de Investigação
Universidade de Lisboa Instituto de Bioengenharia e Biociências, Portugal
|
|
2022/09/01 - 2024/06/30 | SMART - New technologies for Stem cell Manufacturing bioprocess monitoring and ARTificial intelligence-based modeling
PTDC/EQU-EQU/3853/2020
Bolseiro de Investigação
Instituto de Telecomunicações Lisboa, Portugal
Universidade de Lisboa Instituto de Bioengenharia e Biociências, Portugal |
Fundação para a Ciência e a Tecnologia
Em curso
|
Produções
Publicações
Artigo em conferência |
|
Artigo em revista |
|
Poster em conferência |
|
Tese / Dissertação |
|
Atividades
Apresentação oral de trabalho
Título da apresentação | Nome do evento Anfitrião (Local do evento) |
|
---|---|---|
2023/02/16 | Unsupervised Cardiac Differentiation Stage Portraying and Pseudotime Mapping Based on Gene Expression Data | 14th International Conference on Bioinformatics Models, Methods and Algorithms (BIOINFORMATICS 2023)
NSTICC - Institute for Systems and Technologies of Information, Control and Communication (Lisbon, Portugal)
|
Participação em evento
Descrição da atividade Tipo de evento |
Nome do evento Instituição / Organização |
|
---|---|---|
2024/06/10 - 2024/06/14 | Accepted for the Advanced Training Program Systems biology: from large datasets to biological insight at EMBL-EBI
Outro
|
Systems biology: from large datasets to biological insight
European Bioinformatics Institute, Reino Unido
|
2023/11/13 - 2023/11/13 | Poster presentation and participation at the III iBB Workshop. This event, which gathered all the iBB research groups, included
presentations of the current research being undertaken at the research units, several keynote lectures, an alumni session
and, a round table on "What is the vision for the future of iBB regarding funding opportunities, career development and links
within i4HB".
Oficina (workshop)
|
III iBB WORKSHOP
Universidade de Lisboa Instituto de Bioengenharia e Biociências, Portugal
|
2023/09/07 - 2023/09/08 | Poster presentation at the inaugural International Conference of CellAgri Portugal. This conference took place at the International
Iberian Nanotechnology Laboratory in Braga and the main goal was to foster and encourage the collaborative development of
cellular agriculture within Portugal, while also sharing the latest scientific and innovative advancements related to cellular
agriculture products, such as cultivated meat, fish, milk, collagen, leather, fur, wool, and hair, both nationally and internationally.
Conferência
|
1st International Conference of the Portuguese Association for Cellular Agriculture
International Iberian Nanotechnology Laboratory, Portugal
|
2023/02/22 - 2023/02/24 | Attended the 12th International Conference on Pattern Recognition Applications and Methods (ICPRAM 2023) as Conference Delegate.
The International Conference on Pattern Recognition Applications and Methods is a major point of contact between researchers,
engineers and practitioners in the areas of Pattern Recognition and Machine Learning, both from theoretical and application
perspectives.
Conferência
|
12th International Conference on Pattern Recognition Applications and Methods (ICPRAM 2023)
Instituto Para Os Sistemas e Tecnologias de Informação Controlo e Comunicação, Portugal
|
2023/02/16 - 2023/02/18 | Attended the 16th International Joint Conference on Biomedical Engineering Systems and Technologies (BIOSTEC23). The purpose
of BIOSTEC is to bring together researchers and practitioners, including engineers, biologists, health professionals and informatics/computer
scientists, interested in both theoretical advances and applications of information systems, artificial intelligence, signal
processing, electronics and other engineering tools in knowledge areas related to biology and medicine.
Conferência
|
16th International Joint Conference on Biomedical Engineering Systems and Technologies (BIOSTEC23)
Instituto Para Os Sistemas e Tecnologias de Informação Controlo e Comunicação, Portugal
|
2022/12/19 - 2022/12/19 | The i4HB kick-off meeting took place on 19th December gathering researchers from the 3 units that integrate the associate
laboratory, Institute for Bioengineering and Biosciences (iBB), Institute for System Engineering and Computers-Microsystems
and Nanotechnologies (INESC.MN) and Applied Biomolecular Sciences Unit (UCIBIO). The program of the meeting included sessions
about the i4HB Thematic Lines, scientific flash presentations with discussion, a round table session dedicated to career development,
poster sessions and time for networking
Encontro
|
i4HB Kick-off Meeting
Institute for Health and Bioeconomy (i4HB), Portugal
|
2022/09/23 - 2022/09/23 | Poster presentation and participation at the 2nd iBB Workshop. This event, which gathered the four iBB research groups, included
presentations of the current research being undertaken at the research units, several keynote lectures, a round table on challenges
in health and bioeconomy, and a career development session.
Conferência
|
2nd iBB Workshop
Universidade de Lisboa Instituto de Bioengenharia e Biociências, Portugal
|
2022/07/12 - 2022/07/14 | Attended the 3rd International Conference on Deep Learning Theory and Applications (DeLTA 2022) as Conference Delegate. This
conference focuses in Deep Learning and Big Data Analytics, the two major topics of data science nowadays, and Machine-Learning
and Artificial Intelligence which are pervasive in most real-world applications scenarios.
Conferência
|
3rd International Conference on Deep Learning Theory and Applications (DeLTA 2022)
Instituto Para Os Sistemas e Tecnologias de Informação Controlo e Comunicação, Portugal
|
Curso / Disciplina lecionado
Disciplina | Curso (Tipo) | Instituição / Organização | |
---|---|---|---|
2023/09/11 - 2023/12/28 | Machine Learning in Bioengineering | Mestrado em Engenharia Biomédica (Mestrado) | Universidade de Lisboa Instituto Superior Técnico, Portugal |
2023/05/01 - 2023/06/30 | Introdução à Engenharia Biomédica | Licenciatura em Engenharia Biomédica (Licenciatura) | Universidade de Lisboa Instituto Superior Técnico, Portugal |
Tutoria
Tópico | Nome do aluno | |
---|---|---|
2023/09/21 - Atual | Master thesis entitled "New strategies for biosurfactant bioprocess monitoring and control using machine learning" | Carolina Alexandra Jorge Vares |
2023/09/15 - Atual | Master thesis entitled "Analysis of transcriptomic data from stem cell differentiation in bioreactors using Machine Learning" | Afonso Nuno Ribeiro da Silva Mangas Reis |
2022/12/19 - 2023/11/14 | Master thesis entitled "An integrated Unsupervised Machine Learning Workflow for Transcriptome Analysis: A Case study in Cardiac Differentiation" | Inês Sofia Martins Pereira Soares |
2023/09/11 - 2023/11/10 | Course Project on Gene Expression Data for Brain Region Classification | Inês Brites, Inês Marques, Sofia Rebola, Tomás Talento |
2023/09/11 - 2023/11/10 | Course Project on Prediction of Human Induced Pluripotent Stem Cell Cardiac Differentiation Outcome | Pelin Akça, Elena Knollhuber, Robert Spornraft |
2023/09/11 - 2023/11/10 | Course Project on Classification of Human Pluripotent Stem Cell Cardiac Differentiation Outcome | Carolina Vares, Miguel Leonardo, Oriana Pinto |
2023/09/11 - 2023/11/10 | Course Project on Characterization of brain regions through gene expression data using different clustering methods | Isabel Campagnolo, Bernardo Baptista, Cristiana Violante, João Flor |
2023/09/11 - 2023/11/10 | Course Project on Gene Expression Data for Brain Region Classification | Constança Pinto, Inês Castelhano, Margarida Carvalho, Teresa Porqueddu |
2022/10/05 - 2022/11/11 | Course Project on Gene Selection vs. Feature Extraction for Time Series Cardiomyocyte Differentiation RNA-seq | Beatriz Fernandes, Inês Martins, Miguel Amil, Inês Silva |
2022/10/03 - 2022/11/11 | Course Project on Using gene expression data for brain region classification: Analysis of different classification techniques | Augusto Marques, Carolina Cruz, Laura Quintas, Teresa Ribeiro |
2022/10/03 - 2022/11/11 | Course Project on Supervised Learning Approaches For COVID-19 Severity Prediction | Maria Inês Neves, Matilde Lopes, Beatriz Carvalho, André Carneiro |
2022/10/03 - 2022/11/11 | Course Project on Clustering Analysis of Brain Gene Samples | Paola de Gouveia, Marta Serra, Ricardo Amaral, Sara Sebastião |
2022/10/03 - 2022/11/11 | Course Project on Unsupervised Analysis of Gene Signatures for Cardiomyocyte Differentiation Derived From hiPSCs and hESCs | Ana Rita Varela, Ana Matilde Silvano, Diogo Engrácia |
Distinções
Prémio
2018 | 3rd Place at the IST Management Challenge - Best of Class Edition
Instituto Superior Técnico Departamento de Engenharia e Gestão, Portugal
EDP, Portugal |