Identification
Personal identification
- Full name
- Daniel Vieira Noro e Silva Sobral
Citation names
- Sobral, Daniel
Author identifiers
- Ciência ID
- 5C13-14D8-F5A4
- ORCID iD
- 0000-0003-3955-0117
- Google Scholar ID
- ihHfSkUAAAAJ
Email addresses
- daniel.sobral@insa.min-saude.pt (Professional)
Addresses
- Avenida Padre Cruz, 1649-016, Lisboa, Lisboa, Portugal (Professional)
Knowledge fields
- Exact Sciences - Computer and Information Sciences - Bioinformatics
- Natural sciences - Biological Sciences
Languages
Language | Speaking | Reading | Writing | Listening | Peer-review |
---|---|---|---|---|---|
English | Advanced (C1) | Advanced (C1) | Advanced (C1) | Advanced (C1) | Advanced (C1) |
French | Intermediate (B1) | Advanced (C1) | Intermediate (B1) | Upper intermediate (B2) |
Education
Degree | Classification | |
---|---|---|
2009
Concluded
|
Doctorat en Biologie - Spécialité Génomique et Bioinformatique (Doutoramento)
Aix-Marseille Université Ecole Doctorale des Sciences de la Vie et de la Santé, France
"Biological Data Integration: Towards a Global Understanding of Ascidian Development" (THESIS/DISSERTATION)
|
Mention Trés Honorable |
2006
Concluded
|
Mestrado em Engenharia Informática e de Computadores (Mestrado)
Universidade de Lisboa Instituto Superior Técnico, Portugal
"Multi-Level Control For Interactive Narratives - A Proposal for a Narrative Authoring Framework" (THESIS/DISSERTATION)
|
Aprovado |
2002
Concluded
|
Engenharia Informática e de Computadores (Licenciatura)
Universidade de Lisboa Instituto Superior Técnico, Portugal
|
16 |
Affiliation
Science
Category Host institution |
Employer | |
---|---|---|
2022/04/04 - Current | Invited Auxiliary Researcher (Research) | Instituto Nacional de Saúde Doutor Ricardo Jorge, Portugal |
Instituto Nacional de Saúde Doutor Ricardo Jorge, Portugal | ||
2019/04/01 - 2022/04/01 | Postdoc (Research) | UCIBIO - FCT NOVA, Portugal |
2015 - 2019/03/31 | Principal Investigator (Research) | Instituto Gulbenkian de Ciência, Portugal |
2011/12/31 - 2015 | Postdoc (Research) | Instituto Gulbenkian de Ciência, Portugal |
2009/12/01 - 2011/12/30 | Contracted Researcher (Research) | European Bioinformatics Institute, United Kingdom |
Teaching in Higher Education
Category Host institution |
Employer | |
---|---|---|
2002/10/01 - 2004/08/31 | Tutor (University Teacher) | Universidade de Lisboa Instituto Superior Técnico, Portugal |
Others
Category Host institution |
Employer | |
---|---|---|
2005/01/01 - 2009/09/30 | Gulbenkian PhD Fellow | Instituto Gulbenkian de Ciência, Portugal |
Projects
Grant
Designation | Funders | |
---|---|---|
2022/04/04 - Current | OneHealth EJP TELE-Vir project
Invited Scientist Fellow
Instituto Nacional de Saúde Doutor Ricardo Jorge, Portugal
|
European Commission
Ongoing
|
2023/02/01 - 2027/01/31 | DURABLE: Delivering a Unified Research Alliance of Biomedical and public health Laboratories against Epidemics
Researcher
Instituto Nacional de Saúde Doutor Ricardo Jorge, Portugal
|
European Commission
Ongoing
|
2024/05/24 - 2026/05/23 | Capacity building in genomic epidemiology of viral threats through expansion of INSaFLU and training provision
2023.10492.CPCA.A2
Principal investigator
Instituto Nacional de Saúde Doutor Ricardo Jorge IP Departamento de Doenças Infeciosas, Portugal
|
Fundação para a Ciência e a Tecnologia
Ongoing
|
Contract
Designation | Funders | |
---|---|---|
2019/03/01 - 2021/09/30 | Targeting Intra-Tumor Heterogeneity as a promising therapeutic strategy for cancer
PTDC/MED-ONC/28660/2017
Post-doc Fellow
REQUIMTE Unidade de Ciências Biomoleculares Aplicadas, Portugal
|
Fundação para a Ciência e a Tecnologia
Concluded
|
2017/07/01 - 2019/02/28 | BioData.pt - Rede Portuguesa de Dados Biologicos
01/SAICT/2016
Researcher
Instituto Gulbenkian de Ciência, Portugal
|
Associação para a Inovação e Desenvolvimento da FCT European Regional Development Fund Ongoing
|
2017/01/01 - 2019/02/28 | ONEIDA - An Omics Network to Prevent and Control Infectious Diseases and Antimicrobial Resistance
03/SAICT/2015
Researcher
Instituto Gulbenkian de Ciência, Portugal
|
Associação para a Inovação e Desenvolvimento da FCT European Regional Development Fund Concluded
|
2015/09/01 - 2019/02/28 | ELIXIR-EXCELERATE: Fast-track ELIXIR implementation and drive early user exploitation across the life-sciences.
info:eu-repo/grantAgreement/EC/Horizon 2020 Framework Programme/676559/EU
Researcher
Instituto Gulbenkian de Ciência, Portugal
|
European Commission
Concluded
|
2009/12/01 - 2012/01/29 | CISSTEM - Cis-regulatory logic of the transcriptional control in neural stem cells
FP7 – 223210
Researcher
European Bioinformatics Institute, United Kingdom
|
Concluded
|
2005 - 2008 | TRANSCODE - Novel tool for high-throughput characterization of genomic elements regulating gene expression in chordates.
511990
Researcher
Institut de Biologie du Développement de Marseille, France
|
Concluded
|
2002 - 2003 | Victec (Virtual ICT with Empathic Characters)
IST-2001-33310
Researcher
Instituto de Engenharia de Sistemas e Computadores Investigação e Desenvolvimento em Lisboa, Portugal
|
Concluded
|
Other
Designation | Funders | |
---|---|---|
2017 - 2020/09/07 | Gene Regulation Ensemble Effort for the Knowledge Commons
Researcher
Instituto Gulbenkian de Ciência, Portugal
|
Concluded
|
Outputs
Publications
Book chapter |
|
Journal article |
|
Preprint |
|
Activities
Supervision
Thesis Title Role |
Degree Subject (Type) Institution / Organization |
|
---|---|---|
2022/09/01 - 2023/09/30 | Implementation of a Data Analysis Pipeline for the Genetic Characterization of Viral Pathogens in the Context of Laboratory
Surveillance of Viral Outbreaks
Supervisor
|
Biologia Computacional e Bioinformática (Master)
Universidade Nova de Lisboa Faculdade de Ciências e Tecnologia, Portugal
|
2021/09/01 - 2023/05/30 | Finding Biomarkers of Metastatic Potential in Colorectal Cancer
Supervisor
|
Mestrado em Bioinformática e Biologia Computacional (Master)
Universidade de Lisboa Faculdade de Ciências, Portugal
|
2021/01/01 - 2022/06/21 | Assess the effect of angiogenesis inhibition in Intra-Tumor Heterogeneity
Co-supervisor
|
Análise e Engenharia de Big Data (Master)
Universidade Nova de Lisboa, Portugal
|
2019/09 - 2020/09 | Supervision of MsC Thesis: Deciphering mechanisms underlying tumour heterogeneity using Multi-Omics approaches
Co-supervisor
|
Biotecnologia (Engenharia Bioquímica) (Master)
Universidade de Lisboa Instituto Superior Técnico, Portugal
|
Event organisation
Event name Type of event (Role) |
Institution / Organization | |
---|---|---|
2020/07/06 - 2020/07/10 | EMBO Practical Course on "Deciphering tumour heterogeneity and evolution by integration of multi-omics data". This course
aims to provide practical insights for cancer researchers regarding the potentials and challenges of using high throughput
sequencing to estimate intra-tumoral diversity in its multiple facets. This will include the detection of mutational patterns,
selection pressures and driver mutations, as well as techniques for the determination of subclonal diversity and clonal evolution.
(2020/07/06 - 2020/07/10)
Workshop (Co-organisor)
|
Universidade Nova de Lisboa Faculdade de Ciências e Tecnologia, Portugal |
2019/06/03 - 2019/06/07 | GTPB Workshop: Analysis of Differential Expression using RNAseq (2019/06/03 - 2019/06/07)
Workshop (Co-organisor)
|
Instituto Gulbenkian de Ciência, Portugal |
2019/02/07 - 2019/02/08 | GTPB Workshop: Introduction to Bioinformatics (2019/02/04 - 2019/02/08)
Workshop (Co-organisor)
|
Instituto Gulbenkian de Ciência, Portugal |
2018/10/08 - 2018/10/12 | GTPB Workshop: Analysis of Differential Expression using RNAseq (2018/10/08 - 2018/10/12)
Workshop (Co-organisor)
|
Instituto Gulbenkian de Ciência, Portugal |
2018/05/07 - 2018/05/11 | Elixir Excelerate Workshop on Marine Metagenomics (2018/05/07 - 2018/05/11)
Workshop (Co-organisor)
|
Instituto Gulbenkian de Ciência, Portugal |
2018/05/03 - 2018/05/03 | ONEIDA Workshop: Bioinformatics Applications (2018/05/02 - 2018/05/04)
Workshop (Co-organisor)
|
Instituto Gulbenkian de Ciência, Portugal |
2018/04/09 - 2018/04/13 | GTPB Workshop: Analysis of Differential Expression using RNAseq (2018/04/09 - 2018/04/13)
Workshop (Co-organisor)
|
Instituto Gulbenkian de Ciência, Portugal |
2018/02/22 - 2018/02/23 | GTPB Workshop: Introduction to Bioinformatics (2018/02/19 - 2018/02/23)
Workshop (Co-organisor)
|
Instituto Gulbenkian de Ciência, Portugal |
2017/12/04 - 2017/12/07 | GTPB Workshop: Analysis of Differential Expression using RNAseq (2017/12/04 - 2017/12/07)
Workshop (Co-organisor)
|
Instituto Gulbenkian de Ciência, Portugal |
2017/11/09 - 2017/11/10 | GTPB Workshop: Introduction to Bioinformatics (2017/11/06 - 2017/11/10)
Workshop (Co-organisor)
|
Instituto Gulbenkian de Ciência, Portugal |
2017/10/23 - 2017/10/27 | Elixir Excelerate Workshop on Genome Assembly and Annotation (2017/10/23 - 2017/10/27)
Workshop (Co-organisor)
|
Instituto Gulbenkian de Ciência, Portugal |
2017/09/21 - 2017/09/22 | COST Course Molecular Biology meets Bioadhesion Research (2017/09/18 - 2017/09/22)
Workshop (Co-organisor)
|
Universität Innsbruck, Austria |
2017/05/11 - 2017/05/12 | GTPB Workshop: Introduction to Bioinformatics (2017/05/08 - 2017/05/11)
Workshop (Co-organisor)
|
Instituto Gulbenkian de Ciência, Portugal |
2017/04/17 - 2017/04/20 | GTPB Workshop: Analysis of Differential Expression using RNA-Seq (2017/04/17 - 2017/04/20)
Workshop (Co-organisor)
|
Instituto Gulbenkian de Ciência, Portugal |
2015/07/27 - 2015/07/31 | EMBO Practical Course on Measuring intra-species diversity using high-throughput sequencing. This EMBO Practical Course aimed
to show evolutionary biologists and population geneticists potentials and perils of using high throughput sequencing to estimate
intra-specific genetic diversity, from individuals to populations. 20 selected participants had the opportunity to interact
with experienced researchers that successfully applied the technology in a wide variety of high impact studies, and learn
from their successes as well as from their failures. (2015/07/27 - 2015/07/31)
Workshop (Co-organisor)
|
Instituto Gulbenkian de Ciência, Portugal |
Jury of academic degree
Topic Role |
Candidate name (Type of degree) Institution / Organization |
|
---|---|---|
2023/12/15 | Vias desreguladas em células dendríticas plasmocitóides envolvidas na doença pulmonar intersticial associada à esclerose sistémica.
(Thesis) Arguer
|
Raquel dos Anjos Dias Simões (Master)
Universidade de Aveiro, Portugal
|
2022/07/15 | Identification of biotechnological potential on genomic nonfunctionalized orthologs elements
(Thesis) Main arguer
|
Pedro Miguel Agostinho Escudeiro (PhD)
Universidade de Lisboa Faculdade de Ciências, Portugal
|
2021/01/15 | A transcriptomic approach to the metabolism of porphyrin-like pigments in a marine Polychaeta (Eulalia sp.)
(Thesis) Main arguer
|
Maria Leonor Veríssimo dos Santos (Master)
Universidade Nova de Lisboa, Portugal
|
2019/11/26 | Jury of MsC Thesis: Optimizing Data Selection for Contact Prediction in Proteins
(Thesis) Main arguer
|
Guilherme José Gago Fial (Master)
Universidade Nova de Lisboa Faculdade de Ciências e Tecnologia, Portugal
|
2018/04/06 | Jury of PhD Thesis: Analyses of the genomic variation to study cork oak evolution and adaptation: from past to future climatic
changes
(Thesis) Arguer
|
Francisco Rente de Pina Martins (PhD)
Universidade de Lisboa Faculdade de Ciências, Portugal
|
2018/03/22 | Jury of MsC Thesis: Bioinformatics analyses and approaches to RNA-Seq Data
(Thesis) Main arguer
|
Eric Serafim Ramos De Sousa (Master)
Universidade de Lisboa Faculdade de Ciências, Portugal
|
2016/10/24 | Jury of MsC Thesis: Post-transcriptional circadian gene expression regulation in Trypanosoma brucei
(Thesis) Main arguer
|
Daniel Pinto de Oliveira Gonçalves Neves (Master)
Universidade de Lisboa Faculdade de Ciências, Portugal
|
2016/07/21 | Jury of MSc Thesis: Transcriptomic analysis of maritime pine response to infection with Bursaphelenchus Xylophilus, the causing
agent of pine wilt disease
(Thesis) Main arguer
|
Daniel Filipe Branco Gaspar (Master)
Universidade de Lisboa Faculdade de Ciências, Portugal
|
2013/12/02 | Jury of MsC Thesis: Evaluating differential gene expression using RNA-sequencing data: a case study in host-pathogen interaction
upon Listeria monocytogenes infection
(Thesis) Main arguer
|
Joana Rita Gonçalves da Cruz (Master)
Universidade de Lisboa Instituto Superior Técnico, Portugal
|
Course / Discipline taught
Academic session | Degree Subject (Type) | Institution / Organization | |
---|---|---|---|
2018/03/28 - 2018/04/04 | Investigação em Bioinformática | Mestrado em Bioinformática e Biologia Computacional (Mestrado) | Universidade de Lisboa Faculdade de Ciências, Portugal Instituto Gulbenkian de Ciência, Portugal |
2018/03/01 - 2018/03/02 | Introduction to Bioinformatics, IGC PhD Program | Introduction to Bioinformatics (Curso de doutoramento (conclusão de unidades curriculares)) | Instituto Gulbenkian de Ciência, Portugal |
Evaluation committee
Activity description Role |
Institution / Organization | Funding entity | |
---|---|---|---|
2017 - Current | Member of Evaluation Committee for PhD Thesis of Catarina Isabel Ventura Pereira: Systems-Wide Identification of Cystic Fibrosis
Disease Map
Evaluator
|
Universidade de Lisboa Faculdade de Ciências, Portugal |
Mentoring / Tutoring
Topic | Student name | |
---|---|---|
2021/05/01 - Current | Member of PhD Thesis Committee | Ana Marta Fernandes Bica |
2018/02 - 2018/09 | Mentorship of MsC student in Bioinformatics. | Cirenia Baldrich |
2017 - 2018 | Member of PhD Thesis Committee. | Ana Paula Aguiar |
2016/09 - 2017/02 | Mentorship of MsC student in Bioinformatics. | Pedro Perdiguero |
2015/09/01 - 2016/09/30 | Mentorship of MsC student in Bioinformatics. | Samuel Dias Rosa Viana |
2015/01 - 2015/06 | Mentorship of MsC student in Bioinformatics. | David M. F. Francisco |
2014/05/01 - 2014/12/28 | Mentorship of MsC student in Bioinformatics. | Patrícia Alexandra Silva Santos |
Distinctions
Award
2015 | PLOS Genetics Research Prize 2015
Public Library of Science, United States
|