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Since March 2014 I am working as a post doctorate at the Centre of Marine Sciences (CCMAR), Portugal, in the Laboratory of Environmental Technologies with the following main tasks: (a) combining chemical solvent extraction methods with biological processes for the recovery of metals from industrial wastewaters; (b) optimizing anaerobic and aerobic bioreactors to treat municipal and/or industrial wastewaters with high organic load and industrial wastewaters contaminated with metals; (c) use of analytical techniques to monitor bacterial growth and activity, organic compounds, metals and for the characterization of precipitates resulting from chemical or biological processes, (d) taxonomic studies to characterize bacterial communities from bioreactors and polluted waterbodies, (e) support in the construction and evaluation of bioremediation system at pilot plant scale. Just before starting to work in this laboratory I visited for two months (January and February 2014) the laboratories of the Comparative Molecular Endocrinology research team of CCMAR, doing mainly bioinformatics analyses: (f) construction of phylogenetic trees based on specific DNA and protein sequences and (g) characterizing the genomic environment of specific genes to study the local chromosomic rearrangements occurred during evolution. Before that, I worked for sixteen and half years (between July 1997 and December 2013) in the Laboratory of Genomics and Genetic Improvement (LGGI) at the University of Algarve, Portugal. The first six years in this laboratory, I received grants from research projects, then I had a PhD fellow for three years, having completed the PhD in Biology, specialty Genetics in 2006, and the remaining seven and half years I worked as a post-doctoral researcher, having spent six months of those last years at the Crop Centre, School of Life Sciences (former HRI) at Warwick University, United Kingdom. During these sixteen and half years I worked mainly on: (h) genetic diversity studies, (i) genetic mapping of Single Loci and Quantitative Trait Loci (QTLs), (j) constructing a genomic Bacterial Artificial Chromosome (BAC) library, (k) chromosome walking to select BAC clones from targeted mapped regions of interest, (l) preparing libraries of genomic DNA fragments to be sequenced by massive DNA sequencing technologies, (m) aligning the obtained sequence reads by de novo assembling and reference mapping, (n) identifying Open reading Frames (ORFs) and selecting candidate genes. I have also experience in aquaculture: in the final stage of the graduation course, I have mounted a system to study the effect of temperature in the larval development of the Japanese shrimp and after that I worked as assistant technician at an aquaculture hatchery producing microalgae, rotifers and artemia, for the larval culture of seabream and seabass. Moreover, I worked for three months in the Laboratory of Civil Engineering of Macau, doing quality tests to construction materials. At present my main interest is to develop and optimize sustainable biological processes to treat contaminated wastewaters while producing freshwater and recovering valuable products. I am interested particularly in the biotreatment/recovery of metals form acid mine drainage and other industrial wastewaters as well as in developing new biotechnological tools to improve bioremediation of contaminants of emerging concern in municipal wastewaters, such as pharmaceuticals massively consumed by humans and used in agriculture, cattle breeding and aquaculture. In this context, I am also interested in the optimization of analytical techniques to monitor the emergent pollutants, such as pharmaceuticals and products of their degradation and in using taxonomic and metagenomic approaches for the characterization of microbial communities and respective dynamics and putative metabolic pathways responsible for the bioremediation processes.
Identification

Personal identification

Full name
Jorge Carlier

Citation names

  • Carlier, Jorge Daniel Dias

Author identifiers

Ciência ID
691D-A1BB-15CC
ORCID iD
0000-0003-0675-2716
Scopus Author Id
7102166949

Knowledge fields

  • Natural sciences - Biological Sciences
  • Natural sciences - Earth and Environmental Sciences

Languages

Language Speaking Reading Writing Listening Peer-review
Portuguese (Mother tongue)
English Advanced (C1) Advanced (C1) Advanced (C1) Advanced (C1)
French Advanced (C1) Advanced (C1) Advanced (C1) Advanced (C1)
Spanish; Castilian Upper intermediate (B2) Advanced (C1) Advanced (C1) Advanced (C1)
Italian Beginner (A1) Intermediate (B1) Beginner (A1)
Education
Degree Classification
2022/10/18 - 2022/10/19
Attended
Training for Ultra High Performance Liquid Chromatography (Outros)
Centro de Ciências do Mar, Portugal
2022/03/30
Attended
Toolbox - Basic Training for MinION Mk1C (Curso de Especialização Tecnológica)
Centro de Ciências do Mar, Portugal
2020/01/28
Attended
Principles and Aplications of NMR Spectroscopy (Outros)
Centro de Ciências do Mar, Portugal
2015
Attended
Attendance to the Biomedical and Biological Applications of Scanning and Transmission Electron Microscopy course (Outros)
Centro de Ciências do Mar, Portugal
2013
Attended
NGS Bioinformatics seminars & workshops - Mapping & Assembly Workshop (Outros)
Centro de Ciências do Mar, Portugal
2013
Attended
Gestão Global de Resíduos Perigosos (Global Management of Dangerous Wastes) (Outros)
Universidade do Algarve, Portugal
2011 - 2012
Attended
Four modules of the Erasmus Mundus Master Degree program in Quality in Analytical Laboratories (Outros)
Universidade do Algarve, Portugal
2012
Attended
Safe handling of radioisotopes (Outros)
Universidade do Algarve, Portugal
2012
Attended
Gestão Global de Resíduos Perigosos (Global Management of Dangerous Wastes) (Outros)
Universidade do Algarve, Portugal
2011
Attended
A global Perspective on Food Safety Methods and Technologies (Outros)
Instituto Nacional de Saúde Doutor Ricardo Jorge IP, Portugal
2006/10/25
Concluded
Biologia (Doutoramento)
Major in Especialidade: Genética
Universidade do Algarve, Portugal
"Mapeamento Genético do Ananaseiro (ananas Comosus (l.) Merrill)" (THESIS/DISSERTATION)
Approved by unanimity
2006
Attended
DNA sequencing (Outros)
Universidade do Algarve, Portugal
2001
Attended
DNA and Protein sequence evolution (Outros)
Instituto Gulbenkian de Ciência, Portugal
1997
Concluded
Biologia Marinha e Pescas (Licenciatura)
Universidade do Algarve, Portugal
"The effect of temperature in the larval development of the japanese shrimp Penaeus japonicus, Bate, 1888 – “Efeito da temperatura no desenvolvimento larvar e pós-larvar do camarão japonês, Penaeus jap" (THESIS/DISSERTATION)
14
1991
Concluded
Ciências (Ensino secundário)
Liceu de Macau, China
Affiliation

Science

Category
Host institution
Employer
2014/03 - 2024/09 Auxiliary Researcher (Research) Centro de Ciências do Mar, Portugal
Centro de Ciências do Mar, Portugal
2014/01/03 - 2014/02/28 Visiting Researcher (Research) Centro de Ciências do Mar, Portugal
2008/01/01 - 2013/12/31 Postdoc (Research) Fundação para a Ciência e a Tecnologia, Portugal
Universidade do Algarve, Portugal
(...)
2010/07/07 - 2010/12/16 Visiting Researcher (Research) Crop Centre, School of Life Sciences (former HRI), at Warwick University, United Kingdom
2006/11/06 - 2007/12/31 Contracted Researcher (Research) Laboratory of Genomics and Genetic Improvement, Portugal
Universidade do Algarve, Portugal
1997/07/01 - 2003/10/31 Contracted Researcher (Research) Universidade do Algarve, Portugal
Laboratory of Genomics and Genetic Improvement, Portugal

Others

Category
Host institution
Employer
2003/11/01 - 2006/10/31 Ph.D. fellowship Fundação para a Ciência e a Tecnologia, Portugal
Universidade do Algarve, Portugal
(...)
2001/09/17 - 2002/06/14 TEACHING - Practical lessons in Cellular Biology – course: Biotechnology Engineering, - Practical lessons in Genetics – course: Agricultural Engineering Universidade do Algarve, Portugal
1997/03/17 - 1997/06/17 Assistant technician at the aquaculture hatchery unit TIMAR culturas em água LDA, Portugal
1996/06/01 - 1997/02/28 Graduation stage at the Aquaculture Research Group Universidade do Algarve, Portugal
1990/11/12 - 1991/04/03 Trainee Laboratory of Civil Engineering of Macau, China
Projects

Grant

Designation Funders
2021/09/01 - 2024/08/31 Bioaugmentation and conjugative plasmid transference using bacteria from extreme environments to enhance biodegradation of recalcitrant pollutants in WWTP granular sludge
PTDC/CTA-AMB/7782/2020
Principal investigator
Centro de Ciências do Mar, Portugal
Fundação para a Ciência e a Tecnologia
Ongoing
2019 - 2022 Prospección en ambientes subterraneos de compuestos bioactivos microbianos com uso potencial para la medicina, agricultura y medio ambiente
1801
Invited consultant
Universidade do Algarve, Portugal
Concluded
2014/03/01 - 2017/11/30 BIOMETADEMO - Biometal demonstration plant for the biological rehabilitation of metal bearing-wastewaters
FP7/2007-2013
Researcher
Centro de Ciências Marinhas, Portugal
European Commission Seventh Framework Programme for Research and Technological Development
Concluded
2013/07 - 2013/07 Screening of Asian oak species for potential resistance to Phytophthora spp.
Other
Universidade do Algarve, Portugal
Fundação para a Ciência e a Tecnologia
Concluded
2007/01 - 2011/06 Cloning Pp523, a downy mildew resistance gene of Brassica oleracea L
PTDC/AGR-GPL/70135/2006
Researcher
Universidade do Algarve, Portugal
Fundação para a Ciência e a Tecnologia
Concluded
2008/01 - 2009/06 Construction of an integrated genetic map of Pineapple
Researcher
Fundação para a Ciência e a Tecnologia
2002 - 2003 Genetic and molecular characterization of the resistance to downy mildew in Brassica oleracea
FCT 33309/99
Research Fellow
Universidade do Algarve, Portugal
Fundação para a Ciência e a Tecnologia
Concluded
2001 - 2002 Assessment of genetic diversity among Cistus species using molecular markers
POCTI/3500/BSE/2000
Research Fellow
Universidade do Algarve, Portugal
Fundação para a Ciência e a Tecnologia
Concluded
1997/07 - 2001/06 Evaluation and utilization of Pineapple genetic resources from the Amazon to breed resistant varieties
JC18-CT96-0118
Research Fellow
Universidade do Algarve, Portugal
European Union

Contract

Designation Funders
2021/01/01 - 2025/12/31 Centre for Marine and Environmental Research
LA/P/0101/2020
Centro de Ciências do Mar, Portugal

Universidade do Porto Centro Interdisciplinar de Investigação Marinha e Ambiental, Portugal
Fundação para a Ciência e a Tecnologia
Ongoing
2018/09/01 - 2022/05/31 Combinação inovadora de estratégias químicas e biológicas para a recuperação de metais de efluentes e de lixiviados
PTDC/BTA-BTA/29251/2017
FCiênciasID Associação para a Investigação e Desenvolvimento de Ciências, Portugal

Centro de Ciências do Mar, Portugal

Universidade do Algarve, Portugal
Fundação para a Ciência e a Tecnologia
Concluded
2019/01/01 - 2019/12/31 Centre of Marine Sciences
UID/Multi/04326/2019
Centro de Ciências do Mar, Portugal
Fundação para a Ciência e a Tecnologia
Concluded
2019/01/01 - 2019/12/31 CCMAR Base funding
UIDB/Multi/04326/2019
Universidade do Algarve Centro de Ciências do Mar, Portugal
Fundação para a Ciência e a Tecnologia
Concluded
2013/04/01 - 2015/09/30 Bio-sintese de nanomateriais semicondutores usando resíduos de minas e aplicações amigas do ambiente
PTDC/AAG-TEC/2721/2012
Universidade do Algarve, Portugal

Fundação da Faculdade de Ciências da Universidade de Lisboa, Portugal

Universidade NOVA de Lisboa Faculdade de Ciências e Tecnologia, Portugal

Centro de Ciências do Mar, Portugal
Fundação para a Ciência e a Tecnologia
Concluded
Outputs

Publications

Book chapter
  1. Coelho, P.; Farinhó M; Alabaça C; Carlier, Jorge Daniel Dias; et al.. "Caracterização genética e molecular da resistência ao míldio na couve-brócolo". In Cem anos de investigação no centenário do ISA, 271-274. Lisboa, Portugal: Edições Colibri (Extra-colecção) e CEER, 2011.
    Published
  2. Carlier, Jorge Dias; d’Eeckenbrugge, Geo Coppens; Leitão, José Manuel. "Pineapple". In Genome Mapping and Molecular Breeding in Plants, 331-342. Heidelberg, Germany: Springer Berlin Heidelberg, 2007.
    Published • 10.1007/978-3-540-34533-6_18
Conference abstract
  1. Adriana Gonzalez Alivar; Carlier, Jorge Daniel Dias; Costa, Maria Clara ; Isabel Marín-Beltrán. "MP biodegradation in sewage sludge subjected to composting conditions (Biodegradación de microplásticos en lodos de depuradora en condiciones de compost". Paper presented in 3ª JORNADAS SOBRE CONTAMINACIÓN POR PLÁSTICOS, Barcelona, 2024.
  2. Lara-Moreno, Alba; Carlier, Jorge Daniel Dias; et all.. "Application of Novel Bacterial Strains for Paracetamol Mineralization in Aqueous and Sewage Sludge Systems". Paper presented in 34th annual meeting of the Society of Environmental Toxicology and Chemistry – Europe (SETAC Europe), Sevillhe, 2024.
  3. Udundzic, Aja; Carlier, Jorge Daniel Dias; Lara-Moreno, Alba; Costa, Maria Clara. "Identification of Bacterial Strains Competent in Biodegrading Carbamazepine, Diclofenac, and 17-a-Ethinylestradiol – Preliminary results". Paper presented in 15th National Organic Chemistry Meeting (15ENQO), and the 8th National Medicinal Chemistry Meeting (8ENQT), Faro, 2024.
  4. Lara-Moreno, Alba; Carlier, Jorge Daniel Dias; Costa, Maria Clara ; et all.. "Selection of paracetamol and its intermediates metabolites degrading bacteria for bioaugmentation of granular sludge". Paper presented in 6th International Symposium on Water Pollution and Treatment (ISWPT 2023), Bangkok, 2023.
  5. BOUTOUB, OUMAIMA; Carlier, Jorge Daniel Dias; and others. "Euphorbia propolis from Morocco: Mineral content, volatile and phenolic profiles and biological activities". Paper presented in III Bio.Natural 2023 – Bioactive Natural Products Research Conference, Lisbon, 2023.
    Published
  6. Palma, Tânia; Julia Valentine; Alba Moreno; Costa, Maria Clara; Carlier, Jorge Daniel Dias. "Bacteria enriched from marine organisms with the potential for the removal of some pharmaceutical compounds from wastewater". Paper presented in 1st European GREEN Conference - EGC 2023, 2023.
    Published
  7. Adriana Gonzalez Alivar; Isabel Marín-Beltrán; Carlier, Jorge Daniel Dias; Costa, Maria Clara. "Effect of composting from sewage sludge on microplastic biodegradation". Paper presented in Symposium of the Erasmus Mundus MSc in Chemical Innovation and Regulation (ChIR), Faro, 2023.
  8. Coelho, Paula S; Carlier, Jorge Daniel Dias; ANTÓNIO A. MONTEIRO; Leitão, José. "A major QTL conferring downy mildew resistance to Couve Algarvia (Brassica oleracea var. tronchuda) is located on chromosome 8". Paper presented in IHC 2022 | 31ST INTERNATIONAL HORTICULTURAL CONGRESS, 14-20 AUGUST 2022, ANGERS-FRANCE, 2022.
  9. Nobahar, Amir; Carlier, J. D.; Fitas ET; Costa MC. "Enrichment, isolation and characterization of acidophilic sulfate reducing bacteria from São Domingos mine". Paper presented in MIcrobiotec21 webconference - congress of microbiology and biotechnology 2021, Lisboa, 2021.
    Published
  10. Nobahar, Amir; Melka AB; Carlier, J. D.; Lourenço JP; Costa MC. "Recovery of strategic metals from extreme acid mine drainage by combining solvent extraction methods and biological strategies". Paper presented in XXVII Encontro Nacional da Sociedade Portuguesa de Química, Braga, 2021.
    Published
  11. Carlier, Jorge Daniel Dias; Luís, AT; Alexandre, LM; Costa, Maria Clara. "Feasibility of Co-treating Olive Mill Wastewater and Acid Mine Drainage". Paper presented in Centre of Marine Sciences of the Algarve (CCMAR) Symposium, Faro, 2020.
  12. Carlier, Jorge Daniel Dias; Nobahar, Amir; Rodrigues, Joana; Costa, Maria Clara. "Metals recovery from extreme acid mine drainage using plants extracts". Paper presented in Encontro com a Ciência e Tecnologia em Portugal, Lisboa, 2020.
  13. Carlier, Jorge Daniel Dias; and other. "Combining Chemical and Biological Strategies for the recovery of metals from metals bearing wastewaters (METALCHEMBIO)". Paper presented in 17th International Waste Management and Landfill Symposium, Sardinia, 2019.
  14. Carlier, Jorge Daniel Dias; and other. "Separation and recovery of metals from metal bearing wastewaters by liquid-liquid extraction using commercial and novel plant based extractants (METALCHEMBIO PROJECT)". Paper presented in 3rd International Conference & Expo on Green Chemistry and Engineering, Las Vegas, 2019.
    Published
  15. Carlier, Jorge Daniel Dias; and other. "Pilot plant at São Domingos mine for the biological treatment of acid mine drainage". Paper presented in 4ª Jornada Interdisciplinar da Mina de São Domingos: Minas, tecnologias e educação: convergências, Mina de São Domingos, 2017.
    Published
  16. Carlier, Jorge Daniel Dias; and other. "Biologic pilot plant for the treatment of acid mine drainage at São Domingos mine: An overview of its development, scale-up and installation". Paper presented in 13th International Mine Water Association Congress – Mine Water & Circular Economy – A Green Congress, Rauha, 2017.
    Published
  17. Carlier, Jorge Daniel Dias; and other. "Batch tests to access the efficiency of beetroot and orange molasses as sources of nutrients to sustain bioremediation processes for acid mine drainage". Paper presented in 3rd International Congress on Water, Waste and Energy Management (EWWM), Rome, 2016.
    Published
  18. Carlier, Jorge Daniel Dias; and other. "Screening of industrial sub-products as alternative carbon sources to sustain the growth and activity of sulphate-reducing bacteria - Part II". Paper presented in 11th conference on Sustainable Development of Energy, Water and Environment Systems – SDEWES, Lisbon, 2016.
    Published
  19. Carlier, Jorge Daniel Dias; and other. "Investigating the biotechnological potential of filamentous algae from extreme environments". Paper presented in 3rd International Congress on Water, Waste and Energy Management (EWWM), Rome, 2016.
    Published
  20. Carlier, Jorge Daniel Dias; and other. "Investigating the Biodegradation of Acetaminophen by Bacteria communities". Paper presented in 11th conference on Sustainable Development of Energy, Water and Environment Systems – SDEWES, Lisbon, 2016.
    Published
  21. Carlier, Jorge Daniel Dias; and other. "Research projects involving acidic water treatment at the São Domingos mine". Paper presented in II Jornadas Interdisciplinares Mina de São Domingos: Minas, Tecnologias e Educação: Convergências, Mina de São Domingos, 2015.
    Published
  22. Carlier, Jorge Daniel Dias; and other. "Screening of industrial sub-products as alternative carbon sources to sustain the growth and activity of sulphate-reducing bacteria". Paper presented in 10th conference on Sustainable Development of Energy, Water and Environment Systems – SDEWES, Dubrovnik, 2015.
    Published
  23. Carlier, Jorge Daniel Dias; Barros, RJ; Costa, Maria Clara. "Testing Sulphate Reducing Bacteria for the bioremediation of metal-contaminated wastewaters with relatively low sulphate concentrations". Paper presented in International Congress on Green Chemistry and Sustainable Engineering, Barcelona, Spain, 2014.
    Published
  24. Carlier, Jorge Daniel Dias; and other. "Identificação de marcadores SSR em medronheiro (Arbutus unedo L.) por sequenciação massiva paralela". Paper presented in Encontro Nacional do Medronho, Silves, 2013.
    Published
  25. Carlier, Jorge Daniel Dias; and other. "QTL mapping of downy mildew resistance in couve Algarvia". Paper presented in XXXVI Jornadas Portuguesas de Genética, Coimbra, 2011.
    Published
  26. Carlier, Jorge Daniel Dias; and other. "Genomic mapping of a downy mildew resistance gene in Brassica oleracea". Paper presented in XXXVI Jornadas Portuguesas de Genética, Coimbra, 2011.
    Published
  27. Carlier, Jorge Daniel Dias; Farinhó, M.J.; Alabaça, C.; Coelho, P.; Ali, D; Penev, R; Monteiro, A.; Paterson, Andrew H.; Leitao, J.. "Constructing a Physical Map of the Genomic Region Encompassing the Downy Mildew Resistance Gene Pp523 in Brassica oleracea L". Paper presented in 28th International Horticultural Congress, Lisboa, Portugal, 2010.
    Published
  28. Carlier, Jorge Daniel Dias; and other. "A new genetic map of pineapple (Ananas comosus L.) integrates data from an F1 and an F2 population". Paper presented in Plant Genomics European Meeting, Lisbon, 2009.
    Published
  29. Carlier, Jorge Daniel Dias; and other. "Exploiting the Brassica/Arabidopsis genomic synteny for BAC contig construction". Paper presented in Plant Genomics European Meeting, Lisbon, 2009.
    Published
  30. Carlier, Jorge Daniel Dias; and other. "Assigning the linkage groups of a Brassica oleracea L. map to physical chromosomes". Paper presented in Plant Genomics European Meeting, Lisbon, 2009.
    Published
  31. Leitão, José M.; Guerreiro, P; Carlier, Jorge Daniel Dias; Alabaça, C.; Farinhó, M.J.; Coelho, P.; Monteiro, A.. "Advances in positional cloning of PpALG1 and Pp523, two linked downy mildew adult-plant resistance genes in Brassica oleracea L". Paper presented in Plant Genomics European Meeting, Albena, Bulgaria, 2008.
    Published
  32. Carlier, Jorge Daniel Dias; and other. "Progressing Towards the Map-Based Cloning of Downy Mildew Resistance Genes in Brassica oleracea L". Paper presented in 5th ISHS International Symposium on Brassicas and the 16thCrucifer Genetics Workshop, Lillehammer, 2008.
    Published
  33. Carlier, Jorge Daniel Dias; and other. "A Genetic Map of Pineapple (Ananas comosus L.) Constructed Using an F2 Population". Paper presented in Plant Genomics European Meeting, Albena, 2008.
    Published
  34. Carlier, Jorge Daniel Dias; and other. "An Integrated Genetic Map of Pineapple (Ananas comosus (L.) Merrill)". Paper presented in Plant Genomics European Meeting, Albena, 2008.
    Published
  35. Leitao, J. M.; Farinhó, M.J.; Carlier, Jorge Daniel Dias; Marques, AC; Alabaça, Claudia S.; Gambôa, C; Sousa, N; et al. "Da genómica de plantas à genética humana: o laboratório de genómica e de melhoramento genético". Paper presented in 13º Congresso do Algarve, Lagos, Portugal, 2007.
    Published
  36. Carlier, Jorge Daniel Dias; and other. "A linkage map of pineapple (Ananas comosus L.) constructed using an F2 progeny". Paper presented in 1º Encontro da Plataforma Nacional de Genómica Funcional de Plantas, Faro, 2007.
    Published
  37. Carlier, Jorge Daniel Dias; and other. "Constructing an integrated map of DNA markers in Pineapple". Paper presented in Plant & Animal Genomes XIV Conference, San Diego, 2006.
    Published
  38. Carlier, Jorge Daniel Dias; Nancheva, D; Coppens d'Eeckenbrugge, G.; Leitao, J. M.. "Construção de um mapa genético de marcadores moleculares em ananás baseado numa população F2". Paper presented in V Congresso Ibérico de Ciências Hortícolas - IV Congresso Ibero-Americano de Ciências Hortícolas, Porto, Portugal, 2005.
    Published
  39. Carlier, Jorge Daniel Dias; and other. "Identification of Morocco hybrid mandarin "Nadorcott" using isozymes, ISSR, RAPD and AFLP". Paper presented in 12th European Congress on Biotechnology, Copenhagen, 2005.
    Published
  40. Carlier, Jorge Daniel Dias. "Evaluation of genetic diversity among mandarins germplasm in INRA Morocco by molecular markers". Paper presented in 12th European Congress on Biotechnology, Copenhagen, 2005.
    Published
  41. Carlier, Jorge Daniel Dias; and other. "Assessement of genetic diversity among mandarins germplasm from INRA Morocco using ISSR and AFLP". Paper presented in 7th International Congress of Citrus Nuresrymen, Cairo, 2005.
    Published
  42. Carlier, Jorge Daniel Dias; and other. "Molecular characterization of the Morocco mandarin “Nadorcott” using isozymes, ISSR, RAPD and AFLP". Paper presented in 7th International Congress of Citrus Nuresrymen, Cairo, 2005.
    Published
  43. Carlier, Jorge Daniel Dias; FONSECA, FILOMENA; Leitao, J.. "Contribuição para o estudo taxonómico de Cistus palhinhae". Paper presented in 12º Congresso do Algarve, Tavira, 2004.
    Published
  44. Carlier, Jorge Daniel Dias; and other. "Mapping a Downy Mildew Resistance Gene in Broccoli". Paper presented in XXXI Jornadas Portuguesas de Genética, Oeiras, 2004.
    Published
  45. Carlier, Jorge Daniel Dias; and other. "Preliminary Results of Mapping DNA markers in Pineapple using a F2 Population". Paper presented in XXXI Jornadas Portuguesas de Genética, Oeiras, 2004.
    Published
  46. Carlier, Jorge Daniel Dias. "DNA analysis of citrus cultivars from INRA Morocco germplasm with inter simple sequence repeat markers". Paper presented in 10Th International Society of Citriculture (ISC) Congress, Agadir, 2004.
    Published
  47. Carlier, Jorge Daniel Dias; Reis, A.; Duval, M. F.; d’Eeckenbrugge, Geo Coppens; Leitao, J.. "Genetic linkage mapping of RAPD, AFLP and ISSR markers in pineapple". Paper presented in XXVIth International Horticultural Congress & Exhibition, Toronto, Canada, 2002.
    Published
  48. Carlier, Jorge Daniel Dias; and other. "Genetic linkage map of Broccoli based on AFLP, RAPD, SSR and ISSR markers linked to resistance against the Downy Mildew". Paper presented in XXVIth International Horticultural Congress & Exhibition, Toronto, 2002.
    Published
  49. Leitão, José M.; Reis, A.; Pereira, Graca; Carlier, Jorge Daniel Dias; Cabrita, Luis; Farinhó, M.J.; Talhinhas, P. "Molecular markers applications in production and genetic improvement of horticultural crops". Paper presented in International Symposium on Biotechnology Application in Horticultural Crops, Beijing, China, 2000.
    Published
  50. Carlier, Jorge Daniel Dias; and other. "Mapeamento genético de marcadores RAPD, AFLP e ISSR em Ananas spp". Paper presented in 4º Workshop de Biotecnologia de Plantas, Évora, 2000.
    Published
  51. Carlier, Jorge Daniel Dias; Duval, M. F.; d’Eeckenbrugge, Geo Coppens; Leitao, J.. "Resultados preliminares de mapeamento de marcadores moleculares RAPD e AFLP em ananás". Paper presented in 2º Workshop de Biotecnologia de Plantas, Faro, 1999.
    Published
  52. Ferreira, FR; Duval, M. F.; Bernasconi, B; Cabral, JRS; Carlier, Jorge Daniel Dias; Ferreira, ME; Leal, F; et al. "Avaliação e uso de germoplasma de abacaxi para obtenção de variedades melhoradas". Paper presented in Segundo Simpósio de Recursos Genéticos para América Latina e Caribe, Brasilia, Brasil, 1999.
    Published
  53. Carlier, Jorge Daniel Dias; and other. "Preliminary results of mapping RAPD and AFLP markers in pineapple". Paper presented in The 9th European Congress on Biotechnology, Brussels, 1999.
    Published
  54. Carlier, Jorge Daniel Dias. "Preliminary studies on genetic polymorphisms between two chemotypes of Thymus mastichina subsp. mastichina". Paper presented in 30th International Symposium on Essential Oils, Leipzig, 1999.
    Published
  55. Carlier, Jorge Daniel Dias; and other. "Use of molecular markers for selection, genotyping, genetic relatedness assessment and genome mapping in fruit and vegetable species". Paper presented in International symposium on plant genetics engineering, Havana, 1999.
    Published
  56. Leitão, J.M.; Elisiário, Paulo J.; Cabrita, Luis F.; Justo, Edite M.; Pereira, G.M.; Jacob, AP; Carlier, Jorge Daniel Dias; Farinhó, M.J.. "Molecular markers in genetic variability assessment, cultivar fingerprinting and hybrid identification in fruits and vegetables". Paper presented in . XXV International Horticultural Congress (IHC), Brussels, Belgium, 1998.
    Published
Conference paper
  1. Carlier, Jorge; Lara-Moreno, Alba; Ngonyani, Alois; Martins, António; Villagomez, Ayleen; Igbodo, Benjamin; Cox, Cymon; et al. "Selection of bacterial strains to bioaugment granular sludge and improve the removal of recalcitrant pollutants". Paper presented in 18th International Conference on Environmental Science and Technology CEST2023, Athens, 2023.
    10.30955/gnc2023.00371
  2. Nobahar, Amir; Melka AB; Carlier, J. D.; Costa MC. "Solvent Extraction to Recover Copper from Extreme Acid Mine Drainage". Paper presented in 14th IMWA Congress – Mine Water Management for Future Generations, Cardiff, 2021.
    Published
  3. Nobahar, Amir; Melka AB; das Neves LL; Carlier, J. D.; Costa MC. "AliCy as Extractant to Remove Iron from Copper-Free Extreme AMD for Further Extraction of Zinc". Paper presented in 17th International Conference on Environmental Science and Technology CEST2021, Athens, 2021.
    Published • 10.30955/gnc2021.00699
  4. Carlier, Jorge Daniel Dias; et al.. "Combining Chemical and Biological Strategies for the recovery of metals from metals bearing wastewaters (METALCHEMBIO)". Paper presented in 17th International Waste Management and Landfill Symposium, Forte Village, Santa Margherita di Pula, 2019.
    Published
  5. Carlier, J.; Alabaça, C.; Rodrigues, C.; Leitão, J.. "On the way to the identification of a downy mildew resistance gene in Brassica oleracea L.". Paper presented in 6th International Symposium on Brassica and 18th Crucifer Genetic Workshop, Catania, 2012.
    Published
  6. Carlier, J.; Cabrita, L.; Leitão, J.; Sousa, R.M.; Sousa, A.T.. "ISSR and AFLP characterization of Phomopsis amygdali ((Del.) Tuset & Portilla accessions". Paper presented in V International Symposium on Pistachios and Almonds, Sanliurfa, 2011.
    Published • 10.17660/actahortic.2011.912.97
  7. Apostolova, E.; Svetleva, D.; Carlier, J.; Leitao, J.. "Identification of RAPD markers linked to the Fin and P loci in Phaseolus vulgaris L.". Paper presented in IVth Balkan Symposium on Vegetables and Potatoes, Plovdiv, 2008.
    Published
  8. Carlier, J.D.; Nancheva, D.; Leitão, J.M.; Coppens D'Eeckenbrugge, G.. "Genetic mapping of DNA markers in pineapple". Paper presented in V International Pineapple Symposium, Port Alfred, 2005.
    Published • 10.17660/ActaHortic.2006.702.9
  9. Coppens D'Eeckenbrugge, G.; Cabral, J.R.S.; De Matos, A.P.; Carlier, J.; Leitao, J.; Duval, M.F.; Noyer, J.L.; et al. "Main results from the EU-funded project "evaluation and utilization of pineapple genetic resources from the amazon to breed resistant varieties"". Paper presented in IV International Pineapple Symposium, Veracruz, 2005.
    Published • 10.17660/ActaHortic.2005.666.7
  10. Leitão, J.M.; Elisiário, P.J.; Cabrita, L.F.; Justo, E.M.; Pereira, G.M.; Carlier, J.D.; Farinhó, M.J.. "Molecular markers in genetic variability assessment, cultivar fingerprinting and hybrid identification in fruit and vegetables". Paper presented in XXV International Horticultural Congress (IHC), Brussels, 1998.
    Published • 10.17660/ActaHortic.2000.521.20
  11. Coppens d'Eeckenbrugge, G.; Cabrai, J.R.S.; Carlier, J.; Duval, M.F.; Ferreira, F.R.; Leal, F.; Leitão, J.; et al. "The eu-funded project 'evaluation and utilization of pineapple genetic resources from the amazon to breed resistant varieties'". Paper presented in Third International pineapple Symposium., Pattaya, 1998.
    Published
Journal article
  1. A. Nobahar; E. T. Fitas; M. C. Costa; J. D. Carlier. "Acid mine drainage bioremediation using bacteria enriched from the confluence zone between its flow and treated sewage". International Journal of Environmental Science and Technology (2024): https://doi.org/10.1007/s13762-024-06160-z.
    10.1007/s13762-024-06160-z
  2. Carlier, Jorge Dias; dos Reis Ferreira, Gustavo Magno; Schwan, Rosane Freitas; da Silva, Cristina Ferreira; Costa, Maria Clara. "Pb2+ biosorption by Serratia marcescens CCMA 1010 and its relation with zntR gene expression and ZntA efflux pump regulation". Environmental Advances 15 (2024): 100479. http://dx.doi.org/10.1016/j.envadv.2023.100479.
    10.1016/j.envadv.2023.100479
  3. Oumaima Boutoub; Soukaina El-Guendouz; Isabel Matos; Lahsen El Ghadraoui; Maria Clara Costa; Jorge Dias Carlier; Maria Leonor Faleiro; et al. "Chemical Characterization and Biological Properties Assessment of Euphorbia resinifera and Euphorbia officinarum Moroccan Propolis". Antibiotics (2024): https://doi.org/10.3390/antibiotics13030230.
    10.3390/antibiotics13030230
  4. Elamine, Y.; Inácio, P.M.C.; da Graça Miguel, M.; Carlier, J.D.; Costa, M.C.; Estevinho, L.M.; Gomes, H.L.. "Electrical impedance spectroscopy for potassium content analysis and botanical origin identification of honey". Food Chemistry 453 (2024): http://www.scopus.com/inward/record.url?eid=2-s2.0-85193859121&partnerID=MN8TOARS.
    10.1016/j.foodchem.2024.139605
  5. Lara-Moreno, A.; El-Sayed, F.; Cox, C.J.; Costa, M.C.; Carlier, J.D.. "Batch studies on the biodegradation of paracetamol and 1,4-hydroquinone by novel bacterial strains isolated from extreme environmental samples and the identification of candidate catabolic genes". Applied Water Science 14 9 (2024): http://www.scopus.com/inward/record.url?eid=2-s2.0-85201277390&partnerID=MN8TOARS.
    10.1007/s13201-024-02264-6
  6. Lara-Moreno, A.; Vargas-Ordóñez, A.; Villaverde, J.; Madrid, F.; Carlier, J.D.; Santos, J.L.; Alonso, E.; Morillo, E.. "Bacterial bioaugmentation for paracetamol removal from water and sewage sludge. Genomic approaches to elucidate biodegradation pathway". Journal of Hazardous Materials 480 (2024): http://www.scopus.com/inward/record.url?eid=2-s2.0-85206506419&partnerID=MN8TOARS.
    10.1016/j.jhazmat.2024.136128
  7. Lara-Moreno, A.; Costa, M.C.; Vargas-Villagomez, A.; Carlier, J.D.. "New bacterial strains for ibuprofen biodegradation: Drug removal, transformation, and potential catabolic genes". Environmental Microbiology Reports 16 4 (2024): http://www.scopus.com/inward/record.url?eid=2-s2.0-85202070244&partnerID=MN8TOARS.
    10.1111/1758-2229.13320
  8. Amir Nobahar; João Paulo Lourenço; Maria Clara Costa; Jorge Dias Carlier. "Printed Circuit Boards Leaching Followed by Synthesis of Gold Nanoparticle Clusters Using Plant Extracts". Waste and Biomass Valorization (2023): https://doi.org/10.1007/s12649-023-02272-8.
    10.1007/s12649-023-02272-8
  9. Luz Adriana Díaz; Jorge Dias Carlier; Izabela Michalak; María Clara Costa. "Potential Use of Agricultural Waste Carob Kibbles (Ceratonia siliqua L.) as a Biosorbent for Removing Boron from Wastewater". Separations (2023): https://doi.org/10.3390/separations10090464.
    10.3390/separations10090464
  10. Amir Nobahar; Jorge Dias Carlier; Maria Clara Costa. "Recovery of catalytic metals from leaching solutions of spent automotive catalytic converters using plant extracts". Clean Technologies and Environmental Policy (2023): https://doi.org/10.1007/s10098-023-02523-1.
    10.1007/s10098-023-02523-1
  11. Gustavo Magno dos Reis Ferreira; Josiane Ferreira Pires; Luciana Silva Ribeiro; Jorge Dias Carlier; Maria Clara Costa; Rosane Freitas Schwan; Cristina Ferreira Silva. "Impact of lead (Pb2+) on the growth and biological activity of Serratia marcescens selected for wastewater treatment and identification of its zntR gene - a metal efflux regulator". World Journal of Microbiology and Biotechnology (2023): https://doi.org/10.1007/s11274-023-03535-1.
    10.1007/s11274-023-03535-1
  12. Coelho, P.S.; Carlier, J.D.; Monteiro, A.A.; Leitão, J.M.. "A major QTL conferring downy mildew resistance in Couve Algarvia Brassica oleracea var. tronchuda is located on chromosome 8". Acta Horticulturae 1362 (2023): 289-296. http://dx.doi.org/10.17660/actahortic.2023.1362.39.
    Published • 10.17660/actahortic.2023.1362.39
  13. Nobahar, Amir; Melka, Alemu Bejiga; Marín-Beltrán, Isabel; Neves, Luiz; Costa, Maria Clara; Carlier, Jorge Dias. "Zinc Recovery from an Extreme Copper-Free Acid Mine Drainage: Studying the Prior Separation of Ferric Iron by Solvent Extraction using AliCy and/or Alkalinization". Journal of Sustainable Metallurgy (2022): http://dx.doi.org/10.1007/s40831-022-00588-8.
    10.1007/s40831-022-00588-8
  14. Amir Nobahar; Alemu Bejiga Melka; Alexandra Pusta; João Paulo Lourenço; Jorge Dias Carlier; Maria Clara Costa. "A New Application of Solvent Extraction to Separate Copper from Extreme Acid Mine Drainage Producing Solutions for Electrochemical and Biological Recovery Processes". Mine Water and the Environment (2022): https://doi.org/10.1007/s10230-022-00858-7.
    10.1007/s10230-022-00858-7
  15. Oumaima Boutoub; Soukaina El-Guendouz; Ana Manhita; Cristina Barrocas Dias; Letícia M. Estevinho; Vanessa B. Paula; Jorge Carlier; et al. "Comparative Study of the Antioxidant and Enzyme Inhibitory Activities of Two Types of Moroccan Euphorbia Entire Honey and Their Phenolic Extracts". Foods (2021): https://doi.org/10.3390/foods10081909.
    10.3390/foods10081909
  16. Palma, Tânia Luz; Shylova, Anastasiia; Carlier, Jorge Daniel; Costa, Maria Clara. "An autochthonous aerobic bacterial community and its cultivable isolates capable of degrading fluoxetine". Journal of Chemical Technology & Biotechnology (2021): http://dx.doi.org/10.1002/jctb.6829.
    Published • 10.1002/jctb.6829
  17. Nobahar, Amir; Carlier, Jorge Dias; Miguel, Maria Graça; Costa, Maria Clara. "A review of plant metabolites with metal interaction capacity: a green approach for industrial applications". BioMetals (2021): http://dx.doi.org/10.1007/s10534-021-00315-y.
    Published • 10.1007/s10534-021-00315-y
  18. Majdoub, Nesrine; Guendouz, Soukaina el; Carlier, Jorge; Costa, Clara; Guerrero, Carlos Alberto Correia; Duarte, João; Migue, Maria Graça. "Leaf mineral element content and soil characteristics on in vitro antioxidant and enzymatic inhibitory activities of aqueous fennel extracts". Emirates Journal of Food and Agriculture (2021): 73. http://dx.doi.org/10.9755/ejfa.2021.v33.i1.2570.
    Published • 10.9755/ejfa.2021.v33.i1.2570
  19. Carlier, Jorge Dias; Luís, Ana Teresa; Alexandre, Luís Miguel; Costa, Maria Clara. "Feasibility of Co-Treating Olive Mill Wastewater and Acid Mine Drainage". Mine Water and the Environment (2020): http://dx.doi.org/10.1007/s10230-020-00719-1.
    Published • 10.1007/s10230-020-00719-1
  20. Jorge D. Carlier; Sara Ettamimi; Cymon J. Cox; Khalil Hammani; Hassan Ghazal; Maria Clara Costa. Corresponding author: Jorge D. Carlier. "Prokaryotic diversity in stream sediments affected by acid mine drainage". Extremophiles (2020): https://doi.org/10.1007/s00792-020-01196-8.
    Published • 10.1007/s00792-020-01196-8
  21. Boutoub, Oumaima; El-Guendouz, Soukaina; Estevinho, Letícia M.; Paula, Vanessa B.; Aazza, Smail; El Ghadraoui, Lahsen; Rodrigues, Brígida; et al. "Antioxidant activity and enzyme inhibitory potential of Euphorbia resinifera and E. officinarum honeys from Morocco and plant aqueous extracts". Environmental Science and Pollution Research 28 1 (2020): 503-517. http://dx.doi.org/10.1007/s11356-020-10489-6.
    10.1007/s11356-020-10489-6
  22. Ettamimi, Sara; Carlier, Jorge D.; Cox, Cymon J.; Elamine, Youssef; Hammani, Khalil; Ghazal, Hassan; Costa, Maria C.. Corresponding author: Carlier, Jorge D.. "A meta-taxonomic investigation of the prokaryotic diversity of water bodies impacted by acid mine drainage from the São Domingos mine in southern Portugal". Extremophiles (2019): http://dx.doi.org/10.1007/s00792-019-01136-1.
    Published • 10.1007/s00792-019-01136-1
  23. FAZENDA, Pedro; PEREIRA, Ricardo; FONSECA, Maria; CARLIER, Jorge; LEITÃO, José. "Identification and validation of microsatellite markers in strawberry tree(Arbutusunedo L.)". TURKISH JOURNAL OF AGRICULTURE AND FORESTRY 43 4 (2019): 430-436. http://dx.doi.org/10.3906/tar-1807-164.
    Published • 10.3906/tar-1807-164
  24. Elamine, Youssef; Lyoussi, Badiâa; Anjos, Ofélia; Estevinho, Leticia M.; Aazza, Smail; Carlier, Jorge D.; Costa, Maria C.; Miguel, Maria G.. "Zantaz honey “monoflorality”: Chemometric applied to the routinely assessed parameters". LWT 106 (2019): 29-36. http://dx.doi.org/10.1016/j.lwt.2019.02.039.
    Published • 10.1016/j.lwt.2019.02.039
  25. Carlier, J. D.; Alexandre, L. M.; Luís, A. T.; Costa, M. C.. "Potential of industrial by-products and wastes from the Iberian Peninsula as carbon sources for sulphate-reducing bacteria". International Journal of Environmental Science and Technology 16 8 (2019): 4719-4738. http://dx.doi.org/10.1007/s13762-018-02197-z.
    Published • 10.1007/s13762-018-02197-z
  26. Mulatu Yohannes Nanusha; Jorge Carlier; Gonçalo Ivo Carvalho; Maria Clara Costa; Ana Paula Paiva. "Separation and recovery of Pd and Fe as nanosized metal sulphides by combining solvent extraction with biological strategies based on the use of sulphate-reducing bacteria". Separation and Purification Technology (2018): https://doi.org/10.1016/j.seppur.2018.11.062.
    Published • 10.1016/j.seppur.2018.11.062
  27. Tânia Luz Palma; Mbagag Neba Donaldben; Maria Clara Costa; Jorge Dias Carlier. Corresponding author: Jorge Dias Carlier. "Putative Role of Flavobacterium, Dokdonella and Methylophilus Strains in Paracetamol Biodegradation". Water, Air, & Soil Pollution 229 6 (2018): https://doi.org/10.1007/s11270-018-3858-2.
    Published • 10.1007/s11270-018-3858-2
  28. Rodríguez-Solana, Raquel; Carlier, Jorge Dias; Costa, Maria Clara; Romano, Anabela. "Multi-element characterisation of carob, fig and almond liqueurs by MP-AES". Journal of the Institute of Brewing 124 3 (2018): 300-309. http://dx.doi.org/10.1002/jib.495.
    Published • 10.1002/jib.495
  29. Majdoub, Nesrine; el-Guendouz, Soukaina; Rezgui, Marwa; Carlier, Jorge; Costa, Clara; Kaab, Leila Bettaieb Ben; Miguel, Maria Graça. "Growth, photosynthetic pigments, phenolic content and biological activities of Foeniculum vulgare Mill., Anethum graveolens L. and Pimpinella anisum L. (Apiaceae) in response to zinc". Industrial Crops and Products 109 (2017): 627-636. http://dx.doi.org/10.1016/j.indcrop.2017.09.012.
    Published • 10.1016/j.indcrop.2017.09.012
  30. Aazza, Smail; Elamine, Youssef; El-Guendouz, Soukaïna; Lyoussi, Badiâa; Antunes, Maria D.; Estevinho, Leticia M.; Anjos, Ofélia; et al. "Physicochemical characterization and antioxidant activity of honey with Eragrostis spp. pollen predominance". Journal of Food Biochemistry 42 1 (2017): e12431. http://dx.doi.org/10.1111/jfbc.12431.
    Published • 10.1111/jfbc.12431
  31. Ballester, A.; Castro, L.; Costa, M.C.; Carlier, J.; García-Roig, M.; Pérez-Galende, P.; Alvarez, A.; Bertagnolli, C.; Guibal, E.. "Design of remediation pilot plants for the treatment of industrial metal-bearing effluents (BIOMETAL DEMO project): Lab tests". Hydrometallurgy 168 (2017): 103-115. http://www.scopus.com/inward/record.url?eid=2-s2.0-84991256502&partnerID=MN8TOARS.
    Published • 10.1016/j.hydromet.2016.10.010
  32. Pereira, C. G.; Custódio, L.; Rodrigues, M. J.; Neng, N. R.; Nogueira, J. M. F.; Carlier, J.; Costa, M. C.; Varela, J.; Barreira, L.. "Profiling of antioxidant potential and phytoconstituents of Plantago coronopus". Brazilian Journal of Biology 77 3 (2016): 632-641. http://dx.doi.org/10.1590/1519-6984.02416.
    Published • 10.1590/1519-6984.02416
  33. Assunção, A.; Costa, M.C.; Carlier, J.D.. Corresponding author: Carlier, J.D.. "Application of urea–agarose gel electrophoresis to select non-redundant 16S rRNAs for taxonomic studies: palladium(II) removal bacteria". Applied Microbiology and Biotechnology 100 6 (2016): 2721-2735. https://doi.org/10.1007/s00253-015-7163-3.
    Published • 10.1007/s00253-015-7163-3
  34. de Sousa, Nelson; Carlier, Jorge Dias; Santo, Tatiana; Leitão, José. "An integrated genetic map of pineapple (Ananas comosus (L.) Merr.)". Scientia Horticulturae 157 - (2013): 113-118.
    Published • 10.1016/j.scienta.2013.04.018
  35. Carlier, Jorge Dias; Sousa, Nelson Horta; Santo, Tatiana Espírito; d’Eeckenbrugge, Geo Coppens; Leitão, José Manuel. "A genetic map of pineapple (Ananas comosus (L.) Merr.) including SCAR, CAPS, SSR and EST-SSR markers". Molecular Breeding 29 1 (2012): 245-260.
    Published • 10.1007/s11032-010-9543-9
  36. Carlier, Jorge D.; Alabaça, Claudia A.; Coelho, Paula S.; Monteiro, António A.; Leitão, José M.. "The downy mildew resistance locus Pp523 is located on chromosome C8 of Brassica oleracea L.". Plant Breeding 131 1 (2012): 170-175.
    Published • 10.1111/j.1439-0523.2011.01904.x
  37. Carlier, Jorge D.; Alabaça, Claudia S.; Sousa, Nelson H.; Coelho, Paula S.; Monteiro, António A.; Paterson, Andrew H.; Leitão, José M.. "Physical Mapping in a Triplicated Genome: Mapping the Downy Mildew Resistance Locus Pp523 in Brassica oleracea L.". G3: Genes|Genomes|Genetics 1 7 (2011): 593-601.
    Published • 10.1534/g3.111.001099
  38. CARLIER, JORGE; LEITÃO, JOSÉ; FONSECA, FILOMENA. "Population genetic structure of Cistus ladanifer L. (Cistaceae) and genetic differentiation from co-occurring Cistus species". Plant Species Biology 23 3 (2008): 141-151.
    Published • 10.1111/j.1442-1984.2008.00220.x
  39. Svetleva, Diana; Pereira, Graca; Carlier, Jorge Dias; Cabrita, Luis; Leitão, José; Genchev, Dimitar. "Molecular characterization of Phaseolus vulgaris L. genotypes included in Bulgarian collection by ISSR and AFLP™ analyses". Scientia Horticulturae 109 3 (2006): 198-206.
    Published • 10.1016/j.scienta.2006.04.001
  40. Carlier, J. D.; Reis, A.; Duval, M. F.; Coppens d'Eeckenbrugge, G.; Leitao, J. M.. "Genetic maps of RAPD, AFLP and ISSR markers in Ananas bracteatus and A. comosus using the pseudo-testcross strategy". Plant Breeding 123 2 (2004): 186-192.
    Published • 10.1046/j.1439-0523.2003.00924.x
  41. Coelho, P.; Carlier, J.; Svetleva, D.; Monteiro, A.. "Mapping of a locus for adult plant resistance to downy mildew in broccoli (Brassica oleracea convar. italica)". Theoretical and Applied Genetics 109 7 (2004): 1392-13.
    Published • 10.1007/s00122-004-1747-0
Thesis / Dissertation
  1. Carlier, Jorge Daniel Dias. "Mapeamento genético do ananaseiro (Ananas comosus (L.) Merrilll)". PhD, Universidade do Algarve, 2006. http://hdl.handle.net/10400.1/441.
  2. Carlier, Jorge Daniel Dias. "Efeito da temperatura no desenvolvimento larvar e pós-larvar do camarão japonês, Penaeus japonicus, Bate, 1888". Degree, Universidade do Algarve, 1997.

Other

Dataset
  1. Carlier, Jorge Daniel Dias. 90 RAPD, ISSR or AFLP Ananas sp. sequences published at NCBI data bases.. URL: http://www.ncbi.nlm.nih.gov/nuccore?term=carlier+ananas.
  2. Carlier, Jorge Daniel Dias. 178 Brassica oleracea BAC-end sequences published at NCBI data bases. URL: http://www.ncbi.nlm.nih.gov/sites/entrez?db=nucgss&cmd=search&term=carlier%20algarve.
  3. Carlier, Jorge Daniel Dias. 414 Pisum sativum microsatellite sequences published at NCBI data bases. URL: http://www.ncbi.nlm.nih.gov/nuccore/?term=microsatellite%20pisum%20carlier.
  4. Carlier, Jorge Daniel Dias. 1085 Arbutus unedo microsatellite sequences published at NCBI data bases. URL: http://www.ncbi.nlm.nih.gov/nuccore/?term=arbutus+unedo+microsatellite+carlier.
  5. Carlier, Jorge Daniel Dias. 198856 Arbutus unedo Restriction-Site Associated DNA (RAD) fragments sequenced by Next Generation Sequencing. published at the NCBI Sequence Read Archive (SRA) http://trace.ncbi.nlm.nih.gov/Traces/sra/sra.cgi?c.
  6. Carlier, Jorge Daniel Dias. 34 sequences of cloned 16S rRNA gene amplicons obtained for taxonomic studies of palladium(II) removal bacteria. (GenBank accession numbers KT452863 to KT452896) http://www.ncbi.nlm.nih.gov/nuccore/?term=Carlier+p.
  7. Carlier, Jorge Daniel Dias. 16S rRNA gene OTUs for taxonomic studies of bacteria from anaerobic bioreactors. URL: http://www.ncbi.nlm.nih.gov/nuccore/?term=Uncultured+bacterium+clone+Carlier+Martins.
  8. Carlier, Jorge Daniel Dias. 100949 partial sequences (reads) of the 16S rRNA gene sequenced by Next Generation Sequencing for taxonomic studies of bacterial communities from batch tests using Olive Mill Wastewaters as carbon source for Sulphate Reducing Bacteria (SRB) in the treatment of Acid Mine Drainage (AMD). published at the NCBI Sequence Read Archive (SRA). http://www.ncbi.nlm.nih.gov/bioproject/PRJNA30430.
  9. Carlier, Jorge Daniel Dias. 443835 partial sequences (reads) of the 16S rRNA gene sequenced by Next Generation Sequencing for taxonomic studies of bacterial communities from batch tests using a mineral salt medium with 50 mg/L paracetamol. published at the NCBI Sequence Read Archive (SRA). https://www.ncbi.nlm.nih.gov/bioproject/PRJNA4184.
  10. Carlier, Jorge Daniel Dias. 297826 partial sequences (reads) of the 16S rRNA gene sequenced by Next Generation Sequencing for taxonomic studies of bacterial communities in 9 water samples from water bodies contaminated with acid mine drainage in the São Domingos mining area. Published at the NCBI Sequence Read Archive (SRA). https://www.ncbi.nlm.nih.gov/sra/?term=PRJNA47234.
  11. Carlier, Jorge Daniel Dias; MCCosta; and others. genes zntR and 16S rRNA of Serratia marcescens CCMA 1010.
  12. Carlier, Jorge Daniel Dias; Alba Lara-Moreno; and others. Micrococcus yunnanensis strain TJPT4 bacterial strain complete genome.
  13. Carlier, Jorge Daniel Dias; Lara-Moreno, Alba; and others. Mycolicibacterium aubagnense strain HPB1.1 complete genome. 2023.
  14. Carlier, Jorge Daniel Dias; and others. Micrococcus yunnanensis strain TJPT4 bacterial strain complete genome. 2023.
  15. Carlier, Jorge Daniel Dias; and others. Stutzerimonas stutzeri CSW02 bacterial strain complete genome. 2023.
  16. Carlier, Jorge Daniel Dias; and others. Klebsiella pneumoniae TIBU2.1 bacterial strain complete genome. 2023.
Other output
  1. Feira das Ciências Marinhas, 2nd edition. Demonstration activities for about 400 students from all over the Algarve visiting the University of Algarve in a collaboration between CCMAR and CIMA. Activity: The use of bacteria in the treatment of water contaminated with metals.. 2022. Carlier, Jorge Daniel Dias.
  2. Movie - Solvent Extraction and Bioremediation for Copper Recovery from Extreme Acid Mine Drainage. A short movie about work at a pilot plant published in YOUTUBE Solvent extraction (SX) of copper was attempted from an extreme AMD collected at a lagoon located nearby the old factory of Achada do Gamo in Mina de São Domingos. Recovery of copper from the stripping solution obtained by SX was achieved using sulphide from a sulphate reducing bacteria reactor to produce covellite.. 2022. Carlier, Jorge Daniel Dias. https://www.youtube.com/watch?v=JTcw6MkuWL4.
  3. European Researchers' Night (NEI). Demonstration at MarShopping Algarve in Loulé at the CCMAR stand with the theme: Mitigation and prevention of pollution of waterways and lakes by acid mine water.. 2021. Carlier, Jorge Daniel Dias.
  4. Film projection - Pilot plant at São Domingos mine for the biological treatment of acid mine drainage. New impulses for the Algarve's economy: CCMAR's science at the service of the business community.. 2017. Carlier, Jorge Daniel Dias; Ferreira, H; Costa MC.
  5. B2B Oceans Meeting - Showcase area. Direct contact with the public at the CCMAR stand. Organized by the Portuguese Ministry of the Sea, this initiative was attended by government representatives from more than 50 countries, from different international organizations (UNESCO, UNEP, OECD, FAO, CPLP, IMO, Council of the European Union and European Commission), the scientific community and the business sector.. 2017. Carlier, Jorge Daniel Dias.
  6. FarNautica. A fair where the various sectors of the City's economy are present. Direct contact with the public at the CCMAR stand.. 2017. Carlier, Jorge Daniel Dias.
  7. Mar Algarve Expo. A fair where the various sectors of the region's economy are present. Direct contact with the public at the CCMAR stand. 2017. Carlier, Jorge Daniel Dias.
Activities

Oral presentation

Presentation title Event name
Host (Event location)
2024/10/15 MP biodegradation in sewage sludge subjected to composting conditions (“Biodegradación de microplásticos en lodos de depuradora en condiciones de compost”) 3ª JORNADAS SOBRE CONTAMINACIÓN POR PLÁSTICOS
(Barcelona, Spain)
2024/05/05 Application of Novel Bacterial Strains for Paracetamol Mineralization in Aqueous and Sewage Sludge Systems 34th annual meeting of the Society of Environmental Toxicology and Chemistry – Europe (SETAC Europe)
(Seville, Spain)
2023/08/14 Selection of paracetamol and its intermediates metabolites degrading bacteria for bioaugmentation of granular sludge 6th International Symposium on Water Pollution and Treatment (ISWPT 2023)
(Bangkok, Thailand)
2023/08 Selection of bacterial strains to bioaugment granular sludge and improve the removal of recalcitrant pollutants 18th International Conference on Environmental Science and Technology CEST2023
(Athens, Greece)
2023/05 Bacteria enriched from marine organisms with potential for the removal of some pharmaceutical compounds 1st European GREEN Conference - EGC
(Vodice, Croatia)
2021/12/03 Valorization of acid mine water through metal recovery 8th Interdisciplinary Day at the São Domingos Mine: Mines, technologies and education: convergences (Valorização da água ácida de mina através da recuperação de metais. 8ª Jornada Interdisciplinar da Mina de São Domingos: Minas, tecnologias e educação: convergências)
(Mina de São Domingos, Mértola, Portugal)
2021/09 AliCy as Extractant to Remove Iron from Copper-Free Extreme AMD for Further Extraction of Zinc 17th International Conference on Environmental Science and Technology CEST2021
(Athens, Greece)
2021/07 Solvent Extraction to Recover Copper from Extreme Acid Mine Drainage 14th IMWA Congress – Mine Water Management for Future Generations
(Cardiff, United Kingdom)
2020/12/18 Feasibility of Co-treating Olive Mill Wastewater and Acid Mine Drainage Centre of Marine Sciences of the Algarve (CCMAR) Symposium
Centre of Marine Sciences of the Algarve (CCMAR) (Faro, Portugal)
2019/09 Combining Chemical and Biological Strategies for the recovery of metals from metals bearing wastewaters (METALCHEMBIO)
2019/07 Separation and recovery of metals from metal bearing wastewaters by liquid-liquid extraction using commercial and novel plant based extractants (METALCHEMBIO PROJECT) 3rd International Conference & Expo on Green Chemistry and Engineering
(Las Vegas, United States)
2017/09 Pilot plant at São Domingos mine for the biological treatment of acid mine drainage 4th Interdisciplinary Day at the São Domingos Mine: Mines, technologies and education: convergences (4ª Jornada Interdisciplinar da Mina de São Domingos: Minas, tecnologias e educação: convergências)
(Minas de São Domingos, Portugal)
2016/07 Batch tests to access the efficiency of beetroot and orange molasses as sources of nutrients to sustain bioremediation processes for acid mine drainage 3rd International Congress on Water, Waste and Energy Management (EWWM)
(Rome, Italy)
2016 Screening of industrial sub-products as alternative carbon sources to sustain the growth and activity of sulphate-reducing bacteria - Part II 11th conference on Sustainable Development of Energy, Water and Environment Systems – SDEWES
(Lisbon, Portugal)
2015/12 Projetos de investigação envolvendo o tratamento de águas ácidas da mina de São Domingos (Research projects involving acidic water treatment at the São Domingos mine) II Jornadas Interdisciplinares Mina de São Domingos: Minas, Tecnologias e Educação: Convergências
(Mina de São Domingos, Mértola, Portugal)
2015/10 Screening of industrial sub-products as alternative carbon sources to sustain the growth and activity of sulphate-reducing bacteria 10th conference on Sustainable Development of Energy, Water and Environment Systems – SDEWES
(Dubrovnik, Croatia)
2014/07 Testing Sulphate Reducing Bacteria for the bioremediation of metal-contaminated wastewaters with relatively low sulphate concentrations International Congress on Green Chemistry and Sustainable Engineering
(Barcelona, Spain)
2010 Constructing a Physical Map of the Genomic Region Encompassing the Downy Mildew Resistance Gene Pp523 in Brassica oleracea L International Horticultural Congress
(Lisbon, Portugal)
2008/09 Advances in positional cloning of PpALG1 and Pp523, two linked downy mildew adult-plant resistance genes in Brassica oleracea L Plant Genomics European Meeting
(Albena, Bulgaria)
2007/11 Da genómica de plantas à genética humana: o laboratório de genómica e de melhoramento genético 13º Congresso do Algarve, 15-17 November
(lagos)
2005 Genetic mapping of DNA markers in pineapple 5th International Pineapple Symposium
(Port Alfred, South Africa)
2005 Construction of a genetic map of molecular markers in pineapple based on an F2 population (Construção de um mapa genético de marcadores moleculares em ananás baseado numa população F2) V Congresso Ibérico de Ciências Hortícolas - IV Congresso Ibero-Americano de Ciências Hortícolas
(Oporto, Portugal)
2004 Contribuição para o estudo taxonómico de Cistus palhinhae 12º Congresso do Algarve
(Tavira, Portugal)
2002 Genetic linkage mapping of RAPD, AFLP and ISSR markers in pineapple XXVIth International Horticultural Congress & Exhibition
(Toronto, Canada)
2000/09 Molecular markers applications in production and genetic improvement of horticultural crops International Symposium on Biotechnology Application in Horticultural Crops
(Beijing, China)
1999/11 Avaliação e uso de germoplasma de abacaxi para obtenção de variedades melhoradas. Segundo Simpósio de Recursos Genéticos para América Latina e Caribe
(Brasília, Brazil)
1999 Preliminary results of mapping RAPD and AFLP molecular markers in pineapple (Resultados preliminares de mapeamento de marcadores moleculares RAPD e AFLP em ananás) 2º Workshop de Biotecnologia de Plantas
(Faro, Portugal)
1998/08 Molecular markers in genetic variability assessment, cultivar fingerprinting and hybrid identification in fruits and vegetables XXV International Horticultural Congress (IHC)
(Bruxelas)

Supervision

Thesis Title
Role
Degree Subject (Type)
Institution / Organization
2018/09/01 - Current Innovative combination of chemical and biological strategies for the recovery of metals from metal-bearing wastewaters and leachates
Co-supervisor of Amir Nobahar
Biological sciences, Branch of Biochemistry and Biotechnology (PhD)
Universidade do Algarve, Portugal
2023/09 - 2024/09 Searching for bacteria degrading carbamazepine, diclofenac sodium, and 17a-ethinylestradiol from sewage sludge digestor sample and in silico identification of genes potentially involved in the biodegradation of these drugs
Supervisor
Quality in Analytical Laboratories (Master)
Universidade do Algarve Faculdade de Ciências e Tecnologia, Portugal
2022/11 - 2023/08 Implementation of standard methods for parameters routinely monitored in wastewater treatment plants and application in bioaugmentation with Mycolicibacterium sp. In granular sludge reactors
Supervisor of Benjamin Igbodo
Master in “Quality in Analytical Laboratories” (Master)
Universidade do Algarve, Portugal
2021/01 - 2022/12 Biodegradation of paracetamol and its metabolite hydroquinone by bacterial strains isolated from two mine of the Iberian Pyrite Belt
Co-supervisor of Fatma Mahmoud Ahmed El-Sayed Ismail
Master in “Quality in Analytical Laboratories” (Master)
Universidade do Algarve, Portugal
2017/02/01 - 2020/12/09 Microbial diversity at São Domingos mine contaminated with acid mine drainage (PhD - two thesis chapters)
Co-supervisor of Sara Ettamimi
Université Sidi Mohamed Ben Abdellah, Morocco
2019/10 - 2020/07 Separação de Ferro de Drenagem Ácida de Mina por Extração Líquido-Líquido e sua precipitação com bactérias Sulfato-redutoras
Co-supervisor of Luiz Ruy Ladeira das Neves
Biologia (Degree)
Universidade do Algarve, Portugal
2018/09 - 2019/12 Recuperação de metais de águas contaminadas por processos baseados na utilização de extratos das plantas Cistus ladanifer e Erica andevalensis (Recovery of metals from contaminated water by processes based on the use of plant extracts from Cistus ladanifer and Erica andevalensis)
Co-supervisor of Joana Isabel da Silva Rodrigues
Biotecnologia (Master)
Universidade do Algarve, Portugal
2018/09 - 2019/09 Recovery of metals from highly concentrated acid mine drainage by liquid-liquid extraction
Co-supervisor of Alemu Bejiga Melka
Chemical Innovation and Regulation (Master)
Universidade do Algarve, Portugal
2018/09 - 2019/09 Recovery of zinc from metal-plating industrial wastewaters by liquid-liquid extraction
Co-supervisor of Suthapat Sathityatiwat
Chemical Innovation and Regulation (Master)
Universidade do Algarve, Portugal
2018/09 - 2019/09 Comparing the performance of two biological systems for the treatment of real mining wastewater and use of the effluent for seeds semination
Co-supervisor of Mahmoud Zuhri
Water and Coastal Management (Master)
Universidade do Algarve, Portugal
2015/09 - 2017/12 Degradation studies of widely used pharmaceutical compounds by heterogeneous photocatalysis and bacterial communities and isolates (Thesis chapter)
Co-supervisor of Tânia Luz Palma
Biotechnology (PhD)
Universidade do Algarve, Portugal
2017/04/01 - 2017/10/30 Potential use of Serratia marcescens CCMA 1010 in biosorption of toxic metals ( PhD - two thesis Chapters)
Co-supervisor of Gustavo Magno dos Reis Ferreira
Universidade Federal de Lavras, Brazil
2015/11 - 2016/11 Investigating the biodegradation of the emerging pollutant paracetamol by bacteria communities
Co-supervisor of Donaldben Mbagag Neba
Erasmus Mundus Master in Chemical Innovation and Regulation (Master)
Universidade do Algarve, Portugal
2015/10 - 2016/09 The Development and Optimization of Chemical and Biological Methods for the Treatment of Sulphate rich and Heavy metal bearing AMD water from Acid Mine drain by sulphate reducing bacteria (SRB)
Co-supervisor of Anucha Chukwuka Bethel
Erasmus Mundus Master in Chemical Innovation and Regulation (Master)
Universidade do Algarve, Portugal
2015/01 - 2015/12 Batch Screening tests to select suitable and low cost carbon sources for Sulphate Reducing Bacteria (SRB) growth and activity
Co-supervisor of Luís Miguel Babau Alexandre
Biological Engineering (Master)
Universidade do Algarve, Portugal
2015/01/02 - 2015/07/31 Biological and chemical strategies for the-recovery of precious as nanoparticles (PhD thesis chapter).
Co-supervisor of Ana Filipa Benedito da Assunção
Universidade do Algarve, Portugal
2012/09 - 2013/09 Identificação de marcadores SSR e de SNPs em medronheiro (Arbutus unedo L.) por sequenciação massiva paralela (Identification of SSR and SNP markers in strawberry tree (Arbutus unedo L.) by massive parallel sequencing)
Co-supervisor of Pedro Miguel Jesus Fazenda
Agronomic Engineering (Master)
Universidade de Lisboa Instituto Superior de Agronomia, Portugal
2011/09 - 2012/07 Obtenção e mapeamento de novos clones BAC para o isolamento do gene Pp523
Co-supervisor of Carlos Júnio Caridade Rodrigues
Biotechnology (Degree)
Universidade do Algarve, Portugal
2009/10 - 2010/11 Construction of an integrated genetic map of pineapple (Ananas comosus (L.) Merril)
Co-supervisor of Nelson Filipe Coelho Horta de Sousa
Egenharia Biológica (Master)
Universidade do Algarve, Portugal

Jury of academic degree

Topic
Role
Candidate name (Type of degree)
Institution / Organization
2024/09/25 Searching for bacteria degrading carbamazepine, diclofenac sodium, and 17a-ethinylestradiol from sewage sludge digestor sample and in silico identification of genes potentially involved in the biodegradation of these drugs
Supervisor
Anja Udundzic (Master)
Universidade do Algarve Faculdade de Ciências e Tecnologia, Portugal
2024/02/29 Characterization of operons for sucrose metabolism in marine bacteria of the Vibrio genus
(Thesis) Main arguer
Saeideh Eslami (Master)
Universidade do Algarve Faculdade de Ciências e Tecnologia, Portugal
2023/08/15 Implementation of standard methods for parameters routinely monitored in wastewater treatment plants and application in bioaugmentation with Mycolicibacterium sp. In granular sludge reactors
Supervisor
Benjamin Igbodo (Master)
Universidade do Algarve, Portugal
2023/05/15 Innovative combination of chemical and biological strategies for the recovery of metals from metal-bearing wastewaters and leachates
Supervisor
Amir Nobahar (PhD)
Universidade do Algarve, Portugal
2022/12/14 Genetic diversity within a wild rocket [Diplotaxis tenuifolia (L.) DC.] germplasm collection and molecular characterization of selected accessions
(Thesis) Main arguer
João Pedro Martins Reis (Master)
Universidade do Algarve, Portugal
2021/05/13 Transcriptomic analysis of 'rogue' paramutation in pea plants (Pisum sativum L.); Análise transcriptómica da paramutação 'rogue' em ervilheira (Pisum sativum L.).
(Thesis) Main arguer
Melissa Yves de Souza Oliveira (Other)
Universidade do Algarve, Portugal
2021/05/13 Evaluation of genetic similarity relationships in a germplasm collection of strawberry tree (Arbutus unedo L.); Avaliação das relações de similaridade genética numa coleção de germoplasma de medronheiro (Arbutus unedo L.)
(Thesis) Main arguer
Mayara Marques Carneiro da Silva (Other)
Universidade do Algarve, Portugal
2020/12/09 Taxonomic characterization of microbial diversity in Moroccan and Portuguese rivers using a metagenomic approach
Thesis Member
Sara Ettamimi (PhD)
University of Sidi Mohamed Ben Adbellah, Morocco
2019/09 Recovery of metals from highly concentrated acid mine drainage by liquid-liquid extraction
Thesis Member
Alemu Bejiga Melka (Master)
Universidade do Algarve, Portugal
2018/03 Potential use of Serratia marcescens CCMA1010 in Biosorption of toxic metals
(Thesis) Arguer
Gustavo Magno dos Reis Ferreira (PhD)
Universidade Federal de Lavras, Brazil
2016/09 The Development and Optimization of Chemical and Biological Methods for the Treatment of Sulphate rich and Heavy metal bearing AMD water from Acid Mine drain by sulphate reducing bacteria (SRB)
Supervisor
Chukwuka Bethel (Master)
Universidade do Algarve, Portugal
2015/12 Testes em batch para selecionar fontes de carbono de baixo custo adequadas ao crescimento e atividade de bactérias sulfato-redutoras
Thesis Member
Luís Miguel Babau Alexandre (Master)
Universidade do Algarve, Portugal

Committee member

Activity description
Role
Institution / Organization
2007/07/12 - 2007/07/13 Member of the organizing committee: first meeting of the National Platform of Plant Functional Genomics (“1º Encontro da Plataforma Nacional de Genómica Funcional de Plantas”)
Member
Universidade do Algarve, Portugal

Consulting

Activity description Institution / Organization
2023/09/04 - Current Participation as a trainer in the 9th Meeting of Physics and Chemistry Teachers, organized by the Portuguese Physics Society and held at the University of Algarve on September 4th and 5th, 2023, in the Workshop OQ2 - Innovative combination of chemical and biological strategies for the recovery of metals from secondary sources (https://9enpfq.sci-meet.net/) Sociedade Portuguesa de Física, Portugal
2024/10/24 - 2024/10/24 The BIOEXTREMDEGRAD project - Bioaugmentation and conjugative plasmid transfer using bacteria from extreme environments to enhance biodegradation of recalcitrant pollutants in WWTP granular sludge – one hour class. Part of the Seminars in Metagenomics curricular unit of the Molecular and Microbial Biology master's program at the University of Algarve, on October 24, 2024. (At the invitation of professor Maria Leonor Faleiro, as responsible for the indicated curricular unit.) Universidade do Algarve Faculdade de Ciências e Tecnologia, Portugal
2024/07/08 - 2024/07/12 Biorreatores para tratamento de águas ácidas de mina: preparação e monitorização. Scientific occupation of students on vacation in the program “Ciência Viva no Laboratório” (Living Science in the Laboratory) organized by “Ciência Viva”, a Portuguese agency for scientific and technological. Guidance of four students (David Niderost, João Rosa, André Coelho, Michel Taveira) Ciência Viva, Portugal
2024/04/01 - 2024/04/01 A meta-taxonomic approach to identify bacteria with a role in biodegradation of paracetamol – one hour class. Part of the Seminars in Metagenomics curricular unit of the Molecular and Microbial Biology master's program at the University of Algarve, on April 1, 2024. (At the invitation of professor Maria Leonor Faleiro, as responsible for the indicated curricular unit.) Universidade do Algarve Faculdade de Ciências e Tecnologia, Portugal
2023/07/07 - 2023/07/07 BioTour - summer course offered by the University of Algarve to Secondary School students (10th, 11th and 12th grades) with the experimental activity (4 hours – class with 8 students) "Environmentally Friendly Bacteria". Preparation of material for the activity and technical support during the activity. Universidade do Algarve, Portugal
2023/03/29 - 2023/03/29 “Bioremediation of pharmaceuticals in wastewaters – introduction and research cases”, - one lesson (2 hours) module "E03 - Chemical Pollution Remediation" of the Erasmus Mundus master's degree in "Chemical Innovation and Regulation (ChIR)” at UAlg, on March 29, 2023 (By invitation of Professor Maria Clara Costa, as responsible of the indicated curricular units.). Universidade do Algarve, Portugal
2022/05/12 - 2022/05/12 A meta-taxonomic approach to identify bacteria with a role in biodegradation of paracetamol - one lesson (1 hour). Part of the curricular unit “Seminars in Metagenomics” for the master’s degree program “Molecular and Microbial Biology” at UAlg, in 2022. (Invited by the master’s director Professor Maria Leonor Faleiro.) Universidade do Algarve, Portugal
2021/04/19 - 2021/04/19 A meta-taxonomic approach to identify bacteria with a role in biodegradation of paracetamol - one lesson (1 hour). Part of the curricular unit Seminars in Metagenomics for the master's degree program Molecular and Microbial Biology Universidade do Algarve - Campus de Gambelas, Portugal
2020/04/27 - 2020/04/27 - “Investigating the biodegradation of paracetamol by bacteria communities” - one lesson (1 hour). Part of the curricular unit “Seminars in Metagenomics” for the master’s degree program “Molecular and Microbial Biology” at UAlg, on 27th April 2020. (By invitation of Professor Maria Leonor Faleiro, as responsible of the indicated curricular units.) Universidade do Algarve, Portugal
2019 - 2019 “Investigating the biodegradation of paracetamol by bacteria communities” - one lesson (1 hour). Part of the curricular unit “Seminars in Metagenomics” for the master’s degree program “Molecular and Microbial Biology” Universidade do Algarve - Campus de Gambelas, Portugal
2018 - 2018 Application of 16S rRNA genes for taxonomic, populations and phylogenetic studies - one lesson (1 hour). Part of the curricular unit Seminars in Metagenomics for the Master Degree program Molecular and Microbial Biology Universidade do Algarve, Portugal
2017 - 2017 “Monitorização da estação piloto de bio tratamento de água ácida de mina”. Scientific occupation of students on vacation in the program “Ciência Viva no Laboratório” (Living Science in the Laboratory) organized by “Ciência Viva”, a Portuguese agency for scientific and technological. Guidance of two students (Miguel Ângelo Feliciano Ferreira and Catarina Isabel Beato Leitão Cortes Guerreiro) in laboratory activities for 2 weeks. Ciência Viva, Portugal
2016 - 2016 Genetic markers, technologies and applications – From the morphological characters of Mendel and Morgan to the nucleotide variations in massive DNA sequencing - two lessons (2 hours) - Seminars in Metagenomics for the Master program Molecular and Microbial Biology Universidade do Algarve, Portugal
2014/01/03 - 2014/02/28 Academic visit to the Comparative Molecular Endocrinology (CME) research team laboratories at CCMAR, to gain knowledge and experience in constructing phylogenetic trees and analyzing phylogenetic relationships between aligned molecular sequences.
2010/07 - 2010/12 Academic visit to the Crop Centre, School of Life Sciences (former HRI), at Warwick University, United Kingdom, performing QTL mapping analysis with specialized software (R/qtl and Map QTL) under the supervision of Professor Eric Holub, from July to December 2010. University of Warwick University Bookshop, United Kingdom
2006 - 2006 Construction of genetic maps - one lesson (1 hour). Seminars on Biotechnology Universidade do Algarve, Portugal
2004/08/08 - 2004/08/15 Seminar and practical know-how about cloning of DNA fragments Institut National de Recherche Agronomique, Morocco

Course / Discipline taught

Academic session Degree Subject (Type) Institution / Organization
2001 - 2002 Practical lessons in Genetics (All lessons of a full semester / three classes of around 17 students each) (Licenciatura) Universidade do Algarve, Portugal
2001 - 2002 Practical lessons in Cellular Biology (All lessons of a full semester / three classes of around 17 students each) Biotechnology Engineering (Licenciatura) Universidade do Algarve, Portugal

Mentoring / Tutoring

Topic Student name
2023/02/01 - Current Studies on using carob kibbles (Ceratonia siliqua) as potential biosorbent for boron removal from wastewaters Samanta de Oliveira Pereira
2024/04 - 2024/06 Reactivation of acid-tolerant sulphate-reducing bacteria consortia under anaerobic conditions and under variable carbon sources Chima Kelechi
2024/04 - 2024/06 Reactivation of acid-tolerant sulphate-reducing bacteria consortia under anaerobic conditions and under variable carbon sources João Bruno Morais Vieira
2022/01 - 2023/12 Biodegradation of pharmaceuticals using bacteria from marine and extreme environments Alba Lara Moreno
2020/11 - 2021/12 Biochemistry Eduardo António Trindade Fitas
2020/12/01 - 2021/01/31 Absorbance- A tool in bioremediation Inês Filipa Cabral Leal
2019/09 - 2019/11 Laboratory Practices Luiz Ruy Ladeira das Neves
2019/09/10 - 2019/09/25 Laboratory Practices Alexandra Pusta
2018/09 - 2019/02 Laboratory Practices Mook Wei Tze
2017/07/01 - 2017/07/31 Laboratory Practices Inês Machado Bota da Silva
2017/07/10 - 2017/07/14 Laboratory Practices Deng Fujing
2017/07/10 - 2017/07/14 Laboratory Practices Liu Ze Kang
2016/07/12 - 2016/07/16 Laboratory Practices Wang Xu Na
2016/07/12 - 2016/07/16 Laboratory Practices Wan Huishan
2016/07/12 - 2016/07/16 Laboratory Practices Ma Tao
2016/07/12 - 2016/07/16 Laboratory Practices Fang Jingwen
2016/07/12 - 2016/07/16 Laboratory Practices Wei Baocheng
2016/07 - 2016/07 Laboratory Practices Zhou Man Shu
2016/02 - 2016/07 Laboratory Practices Chrystel Tribolet
2016/02 - 2016/07 Laboratory Practices Rafael Colomer Martinez
2015/09 - 2016/06 Investigating the biotechnological potential of filamentous algae from extreme environments Cedric Goossens
2014/09 - 2014/12 Characterization of biota communities living in acid environments (contaminated lakes and streams) Aida Isabel Garcia Muñoz
2008/09 - 2009/09 Identification of molecular markers linked to the downy mildew resistance gene PpAlg1 in ‘Couve Algarvia’ (Brassica oleracea var tronchuda) Claudia Alabaça
2006/09 - 2007/09 Fine mapping of the genomic region encompassing the er locus in Pisum sativum L. Cátia Marques
2004/01 - 2004/12 Evaluation of genetic diversity among mandarins germplasm in INRA Morocco by genetic markers Najat Handaji
2004/02 - 2004/07 development and mapping of ISSR and RAPD genetic markers linked to the Fin and P loci in common bean Elena Apostolova

Other jury / evaluation

Activity description Institution / Organization
2024/01/06 - Current Arguer jury for the evaluation of the Curricular Unit “Plan of Dissertation and Experimental Work” entitled “Characterization of bacteria in seafood and environmental waters from Namibe (Angola)”, of Beatriz Lopes Calado, for the MSc course in Molecular and Microbial Biology, at UAlg on January 6 of 2024. Universidade do Algarve, Portugal
2023/02/01 - Current Arguer jury for the evaluation of the Curricular Unit “Plan of Dissertation and Experimental Work” entitled “Insights into Polyhydroxyalkanoates in Extremophile Microorganisms: search for PHA-related genes and PHA accumulation in halophilic microorganisms recovered from an inland saltern”, of Mariana Galvan Salim, for the MSc course in Molecular and Microbial Biology, at UAlg, on February 1 of 2023. Universidade do Algarve, Portugal
2022/02/10 - Current Arguer jury for the evaluation of the Curricular Unit “Plan of Dissertation and Experimental Work” entitled “Assessment of the genetic diversity within a germplasm collection of wild rocket (Diplotaxis tenuifolia) and identification of molecular markers for positional cloning of a downy mildew (Hyaloperonospora sp.) resistance gene”, of João Pedro Martins dos Reis, of the MSc course on Molecular and Microbial Biology, at UAlg, on February 10 of 2022. Universidade do Algarve, Portugal
2024/04 - 2024/06 Evaluator of the work of João Bruno Morais Vieira, at the Environmental Technologies Laboratory (LET) of CCMAR, entitled “Reactivation of acid-tolerant sulphate-reducing bacteria consortia under anaerobic conditions and under variable carbon sources” for the curricular unit “advanced workshops in biotechnology - Laboratory practices” of the Master’s in Biotechnology Universidade do Algarve Faculdade de Ciências e Tecnologia, Portugal
2024/04 - 2024/06 Evaluator of the work of Chima Kelechi, at the Environmental Technologies Laboratory (LET) of CCMAR, entitled “Reactivation of acid-tolerant sulphate-reducing bacteria consortia under anaerobic conditions and under variable carbon sources” for the curricular unit “advanced workshops in biotechnology - Laboratory practices” of the Master’s in Biotechnology Universidade do Algarve Faculdade de Ciências e Tecnologia, Portugal
2019 - 2019 Part of the Jury to select three researchers, two holding PhD and one graduated, to work in the project “Prospecting in underground environments for microbial bioactive compounds with potential use for medicine, agriculture and the environment – ProBioma” (Prospección en ambientes subterraneos de compuestos bioactivos microbianos com uso potencial para la medicina, agricultura y medio ambiente” – ProBioma). Universidade do Algarve, Portugal
Distinctions

Other distinction

2007 4th place in “Ideias em Caixa 2007”, a Competition of Ideas for the Creation of Biotechnology-Based Companies
CRIA - Divisão de Empreendedorismo e Transferência de Tecnologia da Universidade do Algarve, Portugal