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Cátia Vaz. She completed her PhD in Computer Science and Engineering in 2010 at the University of Lisbon, Instituto Superior Técnico; MSc in Applied Mathematics in 2004 at the University of Lisbon, Instituto Superior Técnico and BSc in Applied Mathematics and Computing in 2002 by the University of Lisbon, Instituto Superior Técnico. She is an Adjunct Professor at the Instituto Politécnico de Lisboa, Instituto Superior de Engenharia de Lisboa and Associate Researcher at the Instituto de Engenharia de Sistemas e Computadores - Investigação e Desenvolvimento in Lisbon. As a teacher, her activities include the supervision of several undergraduate and master's theses, and teaching in the areas of algorithms, programming methodologies and techniques, service-oriented computing, cloud applications. She is responsible for several years of the curricular unit of algorithms and data structures. As a researcher, she has been developing work in several projects dedicated to problems of development and implementation of new algorithms, data structures, and efficient and scalable tools for large-scale data processing, and for the management, representation and extraction of information and knowledge, with applications in areas such as computational biology, biomedicine, and complex network analysis.
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Identification

Personal identification

Full name
Cátia Vaz

Citation names

  • Vaz, Cátia

Author identifiers

Ciência ID
8718-741E-BBD9
ORCID iD
0000-0001-6074-3074

Knowledge fields

  • Engineering and Technology - Electrotechnical Engineering, Electronics and Informatics
  • Exact Sciences - Computer and Information Sciences
  • Exact Sciences - Computer and Information Sciences - Bioinformatics
  • Exact Sciences - Computer and Information Sciences - Computer Sciences
  • Exact Sciences - Computer and Information Sciences - Information Science
Education
Degree Classification
2010
Concluded
 Doutoramento em Engenharia Informática e de Computadores (Doutoramento)
Universidade de Lisboa Instituto Superior Técnico, Portugal
"A formal approach to long running transactions" (THESIS/DISSERTATION)
 Aprovado
2004
Concluded
 Mestrado em Matemática Aplicada (Mestrado)
Universidade de Lisboa Instituto Superior Técnico, Portugal
"Quantales with supports and applications to modal logic" (THESIS/DISSERTATION)
 Aprovado
2002
Concluded
 Licenciatura em Matemática Aplicada e Computação (Licenciatura)
Universidade de Lisboa Instituto Superior Técnico, Portugal
"Independence structures on quantales" (THESIS/DISSERTATION)
Affiliation

Teaching in Higher Education

Category
Host institution 		Employer
2010 - Current Adjunct Teacher (Polytechnic Teacher) Instituto Politécnico de Lisboa Instituto Superior de Engenharia de Lisboa, Portugal

Others

Category
Host institution 		Employer
2010 - Current Researcher Instituto de Engenharia de Sistemas e Computadores Investigação e Desenvolvimento em Lisboa, Portugal
Projects

Contract

Designation Funders
2023/09/01 - 2025/03/03 PhyloLearn:Learning Phylogenetic Trees From Typing Data
IPL/IDI&CA2023/PhyloLearn_ISEL
Principal investigator
Instituto Politécnico de Lisboa, Portugal
 Instituto Politécnico de Lisboa
2024/02/01 - 2025/01/31 CBM4scale -- Compressed Binary Matrix Algorithms for Scaling
CBM4scale
Inno4scale -- Grant Agreement No 101118139
Researcher
Instituto de Engenharia de Sistemas e Computadores Investigação e Desenvolvimento em Lisboa, Portugal
 European Commission
Ongoing
2021 - 2024 VIRHOSTAI, Cutting-Edge Virus-Host Interactome Discovery: A Multi-Omics AI Driven Approach
DSAIPA/DS/0118/2020
DSAIPA/DS/0118/2020
Researcher
Fundação para a Ciência e a Tecnologia
2018/10 - 2022/09 Ferramentas para análise filogenética em larga escala
150867PRJ
 Fundação para a Ciência e a Tecnologia
2021/09 - 2022/08 DIVA: From data integration to visualization in large scale phylogenetic analysis
IPL/2021/DIVA
Principal investigator
Instituto Politécnico de Lisboa
2015/03/01 - 2021/04/01 Instituto de Engenharia de Sistemas e Computadores, Investigação e Desenvolvimento em Lisboa
UID/CEC/50021/2019
SFRH/BPD/110695/2015
Instituto de Engenharia de Sistemas e Computadores Investigação e Desenvolvimento em Lisboa, Portugal
 Fundação para a Ciência e a Tecnologia
Concluded
2016/12/01 - 2019/11/30 BacGenTrack – Um sistema integrado para analise de genomas bacterianos usando metodos de sequenciação de alto débito: identificação de estirpes e visualização de resultados
TUBITAK/0004/2014
148518PRJ
Universidade de Lisboa Instituto de Medicina Molecular João Lobo Antunes, Portugal

Instituto de Engenharia de Sistemas e Computadores Investigação e Desenvolvimento em Lisboa, Portugal
Fundação para a Ciência e a Tecnologia
Concluded
2007 - 2019 BacGenTrack –An integrated system for Bacterial Genome Tracking using high throughput sequencing technology: from identification to visualization.
TÜBITAK-1001-115E596
Researcher
Fundação para a Ciência e a Tecnologia
Concluded
2013/07/01 - 2016/07/03 Tratamento de Dados em Larga-escala em Ambientes Nuvem
EXCL/EEI-ESS/0257/2012
127044PRJ
Universidade de Lisboa Instituto Superior de Agronomia, Portugal

Fundacao de Computacao Cientifica Nacional, Portugal

Instituto de Biologia Experimental e Tecnológica, Portugal

Instituto de Engenharia de Sistemas e Computadores Investigação e Desenvolvimento em Lisboa, Portugal
Fundação para a Ciência e a Tecnologia
Concluded
2013/07 - 2016/06 Large-Scale Data Management in Cloud Environments
Provided by PTCRIS: 127044
Researcher
Fundação para a Ciência e a Tecnologia, I.P.
Concluded
2012/01 - 2016/06 Next Generation Genome Based High Resolution Tracing of Pathogens
278864
C-HEALTH-2011.1.1-1
Other
European Commission
Concluded
2012/01 - 2014/06 NetDyn: Understanding real large networks, from structure to dynamics
Provided by PTCRIS: 118533
Researcher
Fundação para a Ciência e a Tecnologia, I.P.
Concluded
2011/01/01 - 2013/12/31 Strategic Project - UI 527 - 2011-2012
PEst-OE/EEI/UI0527/2011
123438UID
123479UID
PEst-OE/EEI/LA0021/2011
Universidade Nova de Lisboa Faculdade de Ciências e Tecnologia, Portugal

Universidade Nova de Lisboa Laboratório para a Ciência da Computação e Informática, Portugal

Instituto de Engenharia de Sistemas e Computadores Investigação e Desenvolvimento em Lisboa, Portugal
Fundação para a Ciência e a Tecnologia
Concluded
2010/04 - 2013/09 PneumoSyS - A systems biology approach to the role of pneumococcal carbon metabolism in colonization and invasive disease
Provided by PTCRIS: 100964
Researcher
Fundação para a Ciência e a Tecnologia, I.P.
2009/03 - 2012/08 A comprehensive dissection of pneumococcal-host interactions
222983
Researcher
European Commission
2009/07 - 2012/06 BIOHYPO, Confronting the clinical relevance of biocide induced antibiotic resistance,
FP7-KBBE-2008-2B-ID
 European Commission
2005/09 - 2009/08 Software Engineering for Service-Oriented Overlay Computers
16004
Other
European Commission
Concluded
Outputs

Publications

Book
  1. Almeida, J.; Tiple, J.; Ramirez, M.; Melo-Cristino, J.; Vaz, C.; P. Francisco, A.; Carriço, J.A.. An ontology and a REST API for sequence based microbial typing data. 2012.
    10.1007/978-3-642-28062-7_3
  2. Lanese, I.; Vaz, C.; Ferreira, C.. On the expressive power of primitives for compensation handling. 2010.
    10.1007/978-3-642-11957-6_20
  3. Vaz, C.; Ferreira, C.. Towards compensation correctness in interactive systems. 2010.
    10.1007/978-3-642-14458-5_10
  4. Vaz, C.; Ferreira, C.; Ravara, A.. Dynamic recovering of long running transactions. 2009.
    10.1007/978-3-642-00945-7_13
Conference paper
  1. Vaz, Cátia; Correia, Ana Sofia.; Sousa, Inês.; Baptista,Adriano; Filipe, Francisco.; Francisco, A.P.. "A JavaScript library for interactive data visualization in phylogenetics". Paper presented in Simposium em Informática, Inforum, 2022.
    Published
  2. Dantas, B.; Fleitas, C.; Francisco, A.P.; Simão, J; Vaz, Cátia. "From Specification to Automatic Deployment of NGS pipelines". Paper presented in INFORUM, 2016.
  3. Forja, J.; Almeida, A.; Francisco, A. P.; Simão, J.; Vaz, Cátia. "NGS4Cloud: Cloud-based NGS Data Processing". Paper presented in INFORUM, 2016.
  4. Domingos, A. F.; Rijo, P.; Vaz, C.; Francisco, A.P.. "Degrees of separation on a dynamic social network". Paper presented in Workshop on Mining and Learning with Graphs, Chicago, 2013.
  5. Vaz, Cátia; Ferreira, C.. "Towards Automated Verification of Web Services". Paper presented in IADIS WWW / Internet, 2007.
Conference poster
  1. Francisco, A. P.; Nascimento, M.; Vaz, C.. "Dynamic Phylogenetic Inference for Sequence-based Typing Data". Paper presented in Proceedings of the 8th ACM International Conference on Bioinformatics, Computational Biology, and Health Informatics, 2017.
    10.1145/3107411.3108213
  2. Dantas, B.; Fleitas, C.; Almeida, A.; Forja, J.; Simão, J.; Francisco, A.P,; Vaz, Cátia. "NGSPipes: Fostering Reproducibility and Scalability in Biosciences". Paper presented in Proceedings of the 8th ACM International Conference on Bioinformatics, Computational Biology, and Health Informatics, 2017.
  3. Mendes, N.; Monteiro, P.; Chaves, I.; Vaz, C.. "Towards a Plant Experimental Assay Ontology". Paper presented in International Conference on Data Integration in the Life Sciences (DILS), 2014.
  4. Vaz, C.; Reis, P.; Francisco, A. P.; Vinga, S.; Freitas, A. T.. "Spo: An Ontology for Describing Host-pathogen Interactions Inherent to Streptococcus Pneumoniae Infections". Paper presented in Conference on Semantics in Healthcare and Life Sciences (CSHALS), 2012.
  5. Francisco, A.P.; Reis, P.; Abdulrehman, D.; Vaz, Cátia; Santos, M.; Freitas, A.T.. "SDlink: An integrated system for linking biological and biomedical semantic data.". Paper presented in Conference on Semantics in Healthcare and Life Sciences (CSHALS), 2012.
Journal article
  1. Lourenço, B.; Vaz, C.; Coimbra, M.E.; Francisco, A.P.. "phyloDB: A framework for large-scale phylogenetic analysis of sequence based typing data". SoftwareX 26 (2024): http://www.scopus.com/inward/record.url?eid=2-s2.0-85185708946&partnerID=MN8TOARS.
    10.1016/j.softx.2024.101668
  2. António Pedro Branco; Vaz, Cátia; Alexandre P. Francisco. "Computing RF Tree Distance over Succinct Representations". Algorithms 17 1 (2023):
    Published • https://doi.org/10.3390/a17010015
  3. Espada, J.; Francisco, A.P.; Rocher, T.; Russo, L.M.S.; Vaz, C.. "On Finding Optimal (Dynamic) Arborescences". Algorithms 16 12 (2023): http://www.scopus.com/inward/record.url?eid=2-s2.0-85180496151&partnerID=MN8TOARS.
    10.3390/a16120559
  4. Carriço, J. A.; Crochemore,M.; Francisco, A. P.; Solon, S. P.; Ribeiro-Gonçalves, B.; Vaz, C.. "Fast phylogenetic inference from typing data". Algorithms for Molecular Biology (2018): http://dx.doi.org/10.1186/s13015-017-0119-7.
    10.1186/s13015-017-0119-7
  5. Zhou, Z.; Alikhan, N. F.; Sergeant, M.J.; Luhmann, N.; Vaz, C.; Francisco, A.P.; Carriço, J.A.; Achtman, M.. "GrapeTree: visualization of core genomic relationships among 100,000 bacterial pathogens". Genome Research (2018): http://dx.doi.org/10.1101/gr.232397.117.
    10.1101/gr.232397.117
  6. Nascimento, M.; Sousa, A.; Ramirez, M.; Francisco, A.P.; Carriço, J.A.; Vaz, C.. "PHYLOViZ 2.0: Providing scalable data integration and visualization for multiple phylogenetic inference methods". Bioinformatics 33 1 (2017): 128-129. http://www.scopus.com/inward/record.url?eid=2-s2.0-85014853204&partnerID=MN8TOARS.
    10.1093/bioinformatics/btw582
  7. Crochemore,M.; Francisco, A.P.; Solon, S.P.; Vaz, Cátia. "Towards Distance-Based Phylogenetic Inference in Average-Case Linear-Time". Schloss Dagstuhl - Leibniz-Zentrum fuer Informatik GmbH, Wadern/Saarbruecken, Germany (2017): http://drops.dagstuhl.de/opus/volltexte/2017/7652/.
    10.4230/LIPICS.WABI.2017.9
  8. Ribeiro-Gonçalves B; Francisco AP; Vaz C; Ramirez M; Carriço JA. "PHYLOViZ Online: web-based tool for visualization, phylogenetic inference, analysis and sharing of minimum spanning trees.". (2016): http://europepmc.org/abstract/med/27131357.
    10.1093/nar/gkw359
  9. Vaz, C.; Francisco, A.P.; Silva, M.; Jolley, K.A.; Bray, J.E.; Pouseele, H.; Rothganger, J.; Ramirez, M.; Carriço, J.A.. "TypOn: The microbial typing ontology". Journal of Biomedical Semantics 5 1 (2014): http://www.scopus.com/inward/record.url?eid=2-s2.0-84927935396&partnerID=MN8TOARS.
    10.1186/2041-1480-5-43
  10. Vaz, C.; Ferreira, C.. "On the analysis of compensation correctness". Journal of Logic and Algebraic Programming 81 5 (2012): 585-605. http://www.scopus.com/inward/record.url?eid=2-s2.0-84862007044&partnerID=MN8TOARS.
    10.1016/j.jlap.2012.04.002
  11. Francisco, A.P.; Vaz, C.; Monteiro, P.T.; Melo-Cristino, J.; Ramirez, M.; Carriço, J.A.. "PHYLOViZ: Phylogenetic inference and data visualization for sequence based typing methods". BMC Bioinformatics 13 1 (2012): http://www.scopus.com/inward/record.url?eid=2-s2.0-84865286374&partnerID=MN8TOARS.
    10.1186/1471-2105-13-87
Preprint
  1. Dantas, B.; Fleitas, C.; Simão, J.; Francisco, A.P.; Vaz, Cátia; Vaz, C.. "Beyond NGS data sharing and towards open science". 2016. http://www.scopus.com/inward/record.url?eid=2-s2.0-85169718755&partnerID=MN8TOARS.
    10.48550/arxiv.1701.03507
Thesis / Dissertation
  1. Vaz, Cátia. "A FORMAL APPROACH TO LONG RUNNING TRANSACTIONS". PhD, Universidade de Lisboa Instituto Superior Técnico, 2010.
  2. Vaz, Cátia. "Quantales support and application to modal logic". Master, Universidade de Lisboa Instituto Superior Técnico, 2004.
  3. Vaz, Cátia. "Independence Structures on Quantales". Degree, Universidade de Lisboa Instituto Superior Técnico, 2002.

Other

Other output
  1. A modular and scalable web platform for computational phylogenetics. 2024. Brandão, N.; Jesus, A.; Páscoa, A.; Francisco, A.P.; Ramirez, M.; Vaz, C.. http://www.scopus.com/inward/record.url?eid=2-s2.0-85196564401&partnerID=MN8TOARS.
    10.48550/arXiv.2405.16346
  2. Phylogenetic tree distance computation over succinct representations. 2023. Branco, A.P.; Vaz, C.; Francisco, A.P.. http://www.scopus.com/inward/record.url?eid=2-s2.0-85180922385&partnerID=MN8TOARS.
    10.48550/arXiv.2312.14029
  3. phyloDB: A framework for large-scale phylogenetic analysis. 2023. Lourenço, B.; Vaz, C.; Coimbra, M.E.; Francisco, A.P.. http://www.scopus.com/inward/record.url?eid=2-s2.0-85175138402&partnerID=MN8TOARS.
    10.48550/arXiv.2310.12658
  4. FLOWViZ: Framework for Phylogenetic Processing. 2022. Luís, M.; Vaz, C.. http://www.scopus.com/inward/record.url?eid=2-s2.0-85143698843&partnerID=MN8TOARS.
    10.48550/arXiv.2211.15282
  5. Distance-based phylogenetic inference from typing data: a unifying view. 2020. Vaz, C.; Nascimento, M.; Carriço, J.A.; Rocher, T.; Francisco, A.P.. http://www.scopus.com/inward/record.url?eid=2-s2.0-85171036721&partnerID=MN8TOARS.
    10.48550/arxiv.2006.07016
  6. GrapeTree: Visualization of core genomic relationships among 100,000 bacterial pathogens. 2017. Zhou, Z.; Alikhan, N.-F.; Sergeant, M.J.; Luhmann, N.; Vaz, C.; Francisco, A.P.; Carriço, J.A.; Achtman, M.. http://www.scopus.com/inward/record.url?eid=2-s2.0-85095645414&partnerID=MN8TOARS.
    10.1101/216788
Activities

Supervision

Thesis Title
Role 		Degree Subject (Type)
Institution / Organization
2022/09 - 2023/12/22 An algorithmic approach to the comparison of phylogenetic trees and networks.
Supervisor of António Pedro Paredes Silva Branco
 Ciências de Engenharia - Engenharia Informática e de Computadores (Master)
Universidade de Lisboa Instituto Superior Técnico, Portugal
2020 - 2023/07 Development of algorithms solving pharmacokinetics problems and software verification
Co-supervisor
2020/03 - 2023 Development of Algorithms solving pharmacokinetics problem and software verification
Co-supervisor of Lida Sagimbayeva
Al-Farabi Kazakh National University, Kazakhstan
2021/12 - 2022/12 Scholarship advisor of Miguel Luís, in the context of project NGPHYLO
Supervisor of Miguel Luís
Instituto de Engenharia de Sistemas e Computadores Investigação e Desenvolvimento em Lisboa, Portugal
2021/09 - 2022/12 Web framework for phylogenetic processing
Supervisor
 Engenharia Informática e de Computadores (Master)
Instituto Politécnico de Lisboa Instituto Superior de Engenharia de Lisboa, Portugal
2022/03 - 2022/07 Projeto Final de Curso: PHYLODiff.
Supervisor of Pedro Gardete; Francisco Ludovico
 Engenharia Informática e de Computadores (Other)
Instituto Politécnico de Lisboa Instituto Superior de Engenharia de Lisboa, Portugal
2021/12/15 - 2022/02 Scholarship advisor of Marta Ferreira, in the context of project DIVA
Supervisor of Marta Ferreira
Instituto Politécnico de Lisboa Instituto Superior de Engenharia de Lisboa, Portugal
2021 - 2021 Force Direct Visualization for Phylogenetic Tree (BSc thesis)
Supervisor
 Engenharia Informática e de Computadores (Degree)
Instituto Politécnico de Lisboa Instituto Superior de Engenharia de Lisboa, Portugal
2021 - 2021 Visualização Radial e Dendograma de árvores filogenéticas (BSc thesis)
Supervisor
 Engenharia Informática e de Computadores (Degree)
Instituto Politécnico de Lisboa Instituto Superior de Engenharia de Lisboa, Portugal
2019/09 - 2020/12 A framework for large scale phylogenetic analysis
Supervisor of Bruno Lourenço
 Engenharia Informática e de Computadores (Master)
Universidade de Lisboa Instituto Superior Técnico, Portugal
2019/09 - 2020/12 Library of efficient algorithms for phylogenetic analysis
Supervisor of Luana Silva
 Engenharia Informática e de Computadores (Master)
Universidade de Lisboa Instituto Superior Técnico, Portugal
2019/09 - 2020/09 Social Media Activity Analysis
Supervisor of Carolina Cândido
 Engenharia Informática e de Computadores (Master)
Instituto Politécnico de Lisboa Instituto Superior de Engenharia de Lisboa, Portugal
2020/03 - 2020/07 Planear e Gerir Eventos - SPGE (BSc thesis)
Supervisor of Marco Fonseca, Alexandre Venâncio e Carlos Catrampona
 Engenharia Informática e de Computadores (Degree)
Instituto Politécnico de Lisboa Instituto Superior de Engenharia de Lisboa, Portugal
2020 - 2020 Open source e-learning platform (BSc thesis)
Supervisor of Rodrigo Leal, André Oliveira e João Santos
 Engenharia Informática e de Computadores (Degree)
Instituto Politécnico de Lisboa Instituto Superior de Engenharia de Lisboa, Portugal
2020 - 2020 PressQ: Press Quotes (BSc thesis)
Supervisor of André Martins, João Cardoso e Marta Ferreira
 Engenharia Informática e de Computadores (Degree)
Instituto Politécnico de Lisboa Instituto Superior de Engenharia de Lisboa, Portugal
2018 - 2019/12/12 Parallel execution of pipelines using bioinformatics tools
Supervisor of Calmenelias Fleitas
 Engenharia Informática e de Computadores (Master)
Instituto Politécnico de Lisboa Instituto Superior de Engenharia de Lisboa, Portugal
2018 - 2019/11/14 Bioinformatic pipeline specification language and sharing system
Supervisor of Bruno Dantas
 Engenharia Informática e de Computadores (Master)
Instituto Politécnico de Lisboa Instituto Superior de Engenharia de Lisboa, Portugal
2019/02 - 2019/07/23 Implementação de um sistema de gestão de conteúdo (BSc thesis)
Supervisor of Luís Abrunhosa e João Paulo Francisco
 Engenharia Informática e de Computadores (Degree)
Instituto Politécnico de Lisboa Instituto Superior de Engenharia de Lisboa, Portugal
2019 - 2019 Plataforma de execução de testes para avaliação de trabalhos práticos (BSc thesis)
Supervisor of Guilherme Arede e João Francisco
 Engenharia Informática e de Computadores (Degree)
Instituto Politécnico de Lisboa Instituto Superior de Engenharia de Lisboa, Portugal
2018 - 2018 PHYLOViZ-Electron: Cross-platform application for processing, analysing and visualising molecular typing data (BSc thesis)
Supervisor of Diogo Loureiro, Leonardo Alexandre e Luana Silva
 Engenharia Informática e de Computadores (Degree)
Instituto Politécnico de Lisboa Instituto Superior de Engenharia de Lisboa, Portugal
2016/09 - 2017/09/11 Large Scale and Dynamic Phylogenetic Inference from Epidemic Data
Co-supervisor of Marta Nascimento
 Engenharia Informática e de Computadores
Universidade de Lisboa Instituto Superior Técnico, Portugal
2017 - 2017 DyTA - Análise e Visualização Dinâmica deÁrvores Filogenéticas (BSc thesis)
Supervisor of João Correia e Paulo Fonseca
 Engenharia Informática e de Computadores (Degree)
Instituto Politécnico de Lisboa Instituto Superior de Engenharia de Lisboa, Portugal
2017 - 2017 Sistema de Gestão de Video-Vigilância (BSc thesis)
Co-supervisor of Ricardo Pereira
 Engenharia Informática e de Computadores (Degree)
Instituto Politécnico de Lisboa Instituto Superior de Engenharia de Lisboa, Portugal
2016 - 2016 NGS4Cloud: Cloud-based NGS Data Processing
Supervisor of Alexandre Almeida e João Forja
 Engenharia Informática e de Computadores (Degree)
Instituto Politécnico de Lisboa Instituto Superior de Engenharia de Lisboa, Portugal
2015 - 2015 Visualização e algoritmos de clustering para análise filogenética (BSc thesis)
Supervisor
 Engenharia Informática e de Computadores (Degree)
Instituto Politécnico de Lisboa Instituto Superior de Engenharia de Lisboa, Portugal
2015 - 2015 Infraestrutura de suporte à execução de fluxos de trabalho para a bioinformática (BSc thesis)
Supervisor
 Engenharia Informática e de Computadores (Degree)
Instituto Politécnico de Lisboa Instituto Superior de Engenharia de Lisboa, Portugal
2015 - 2015 Compressão especializada (BSc thesis)
Supervisor
 Engenharia Informática e de Computadores (Degree)
Instituto Politécnico de Lisboa Instituto Superior de Engenharia de Lisboa, Portugal
2014 - 2014 Análise e processamento distribuído de redes de grande dimensão (BSc thesis)
Supervisor of André Mota e Aguinaldo Pontes
 Engenharia Informática e de Computadores (Degree)
Instituto Politécnico de Lisboa Instituto Superior de Engenharia de Lisboa, Portugal
2012 - 2012 Social Networks - As ligações espelham as interacções? (BSc thesis)
Supervisor of Hugo Ferreira e André Domingues
 Engenharia Informática e de Computadores (Degree)
Instituto Politécnico de Lisboa Instituto Superior de Engenharia de Lisboa, Portugal
2012 - 2012 Estrutura de disseminação de dados microbiológicos com controle de acessos realizado (BSc thesis)
Supervisor
 Engenharia Informática e de Computadores (Degree)
Instituto Politécnico de Lisboa Instituto Superior de Engenharia de Lisboa, Portugal
2011 - 2011 What is this song? (BSc thesis)
Supervisor of Artem Umanets
 Engenharia Informática e de Computadores (Degree)
Instituto Politécnico de Lisboa Instituto Superior de Engenharia de Lisboa, Portugal
2010 - 2010 RESTful Multilocus Sequence Typing Information System (BSc thesis)
Supervisor of Almeida and João Tiple
 Engenharia Informática e de Computadores (Degree)
Instituto Politécnico de Lisboa Instituto Superior de Engenharia de Lisboa, Portugal
2009 - 2009 Framework de integração e visualização de dados biológicos (BSc thesis)
Supervisor of Lelo Sumbu Abel e Diogo Silva
 Engenharia Informática e de Computadores (Degree)
Instituto Politécnico de Lisboa Instituto Superior de Engenharia de Lisboa, Portugal

Event organisation

Event name
Type of event (Role) 		Institution / Organization
2019 - 2019 Member of the Organizing Committee of the Conference on Artificial Intelligence & Big Data, 2019. (2019 - 2019)
Conference (Co-organisor)
 Universidade de Lisboa Instituto de Ciências Sociais, Portugal
2016 - 2016 Member of the Organising Committee of the Conference on Electronics, Telecommunications and Computers, Lisboa, (CETC 2016) (2016 - 2016)
Conference (Member of the Organising Committee)
 Instituto Politécnico de Lisboa Instituto Superior de Engenharia de Lisboa, Portugal
2016 - 2016 Member of the Program Committee of the Conference on Electronics, Telecommunications and Computers (CETC 2016) (2016 - 2016)
Conference (Member of the Scientific Committee)
 Instituto Politécnico de Lisboa Instituto Superior de Engenharia de Lisboa, Portugal
2014 - 2014 Member of the Program Committee at the Tenth International Conference on Data Integration in the Life Sciences (DILS, 2014) (2014 - 2014)
Conference (Member of the Scientific Committee)
 Instituto Politécnico de Lisboa Instituto Superior de Engenharia de Lisboa, Portugal
2013 - 2013 Member of the Organising Committee of the Conference on Electronics, Telecommunications and Computers, Lisboa, (CEETC, 2013). (2013 - 2013)
Conference (Member of the Organising Committee)
 Instituto Politécnico de Lisboa Instituto Superior de Engenharia de Lisboa, Portugal
2013 - 2013 Member of the Program Committee at Conference on Electronics, Telecommunications and Computers (CETC 2013), (2013 - 2013)
Conference (Member of the Scientific Committee)
 Instituto Politécnico de Lisboa Instituto Superior de Engenharia de Lisboa, Portugal
2011 - 2011 Member of the Organising Committee of the Conference on Electronics, Telecommunications and Computers, (CEETC, 2011) (2011 - 2011)
Conference (Member of the Organising Committee)
 Instituto Politécnico de Lisboa Instituto Superior de Engenharia de Lisboa, Portugal
2011 - 2011 Member of the Program Committee of the Conference on Electronics, Telecommunications and Computers (CETC 2011) (2011 - 2011)
Conference (Member of the Scientific Committee)
 Instituto Politécnico de Lisboa Instituto Superior de Engenharia de Lisboa, Portugal

Jury of academic degree

Topic
Role 		Candidate name (Type of degree)
Institution / Organization
2021 Ask Recycle Bot (BSc thesis)
(Thesis) Arguer
 João Gonçalo Martins Bonacho; João Miguel Evaristo Santos e André Lobo Noronha (Other)
Instituto Politécnico de Lisboa Instituto Superior de Engenharia de Lisboa, Portugal
2021 Appraisal System (BSc thesis)
(Thesis) Arguer
 Ricardo Jorge Pinto Monteiro, Alexandre Santos Rocha e Filipe Ramos Mendes (Other)
Instituto Politécnico de Lisboa Instituto Superior de Engenharia de Lisboa, Portugal
2021 Multihomed Network Load Balancer (BSc thesis)
President of the jury
 Vladyslav Vorobyov (Other)
Instituto Politécnico de Lisboa Instituto Superior de Engenharia de Lisboa, Portugal
2021 SmartFactory (SF) 4.0 (BSc thesis)
(Thesis) Arguer
 Diogo Filipe Lagoa Martins (Other)
Instituto Politécnico de Lisboa Instituto Superior de Engenharia de Lisboa, Portugal
2020 Discovery of discriminative patterns in oncological data to understand surgical risk factors
(Thesis) Main arguer
 Leonardo Alexandre (Master)
Universidade de Lisboa Instituto Superior Técnico, Portugal
2020 Corporate Collaboration (BSc thesis)
(Thesis) Main arguer
 Valde- mar Antunes, David Fidalgo e Pedro Santos (Other)
Instituto Politécnico de Lisboa Instituto Superior de Engenharia de Lisboa, Portugal
2020 Plataforma para edição de enunciados escolares (BSc thesis)
(Thesis) Main arguer
 Sérgio Cardoso (Other)
Instituto Politécnico de Lisboa Instituto Superior de Engenharia de Lisboa, Portugal
2020 Schedule Generator (BSc thesis)
(Thesis) Main arguer
 Gonçalo Caldeira (Other)
Instituto Politécnico de Lisboa Instituto Superior de Engenharia de Lisboa, Portugal
2020 Conversão de contratos WSDL para Protobuffer - WSDL para Protobuffer (BSc thesis)
(Thesis) Main arguer
 Hélio Caetano e Ricardo Santos (Other)
Instituto Politécnico de Lisboa Instituto Superior de Engenharia de Lisboa, Portugal
2020 FancyThingsShop (BSc thesis)
President of the jury
 Helena Gomes (Other)
Instituto Politécnico de Lisboa Instituto Superior de Engenharia de Lisboa, Portugal
2019/11/21 Unsupervised Concepts Analysis in Legal Documents
(Thesis) Main arguer
 Pavlo Kovalchuk (Master)
Universidade de Lisboa Instituto Superior Técnico, Portugal
2019/10/03 Front-end framework for BPM engine integration (BSc thesis)
(Thesis) Main arguer
 João Pereira, João Martins e Tiago Santos e Silva (Other)
Instituto Politécnico de Lisboa Instituto Superior de Engenharia de Lisboa, Portugal
2019/09/25 Isel Document REAder and note ManagER (BSc thesis)
(Thesis) Main arguer
 Edgar Caruço (Other)
Instituto Politécnico de Lisboa Instituto Superior de Engenharia de Lisboa, Portugal
2019/09/04 IntelliBuy - Compras Inteligentes (BSc thesis)
President of the jury
 Artur Herbert e Luís Silva (Other)
Instituto Politécnico de Lisboa Instituto Superior de Engenharia de Lisboa, Portugal
2019/09/01 Como se está a sentir hoje? (BSc thesis)
(Thesis) Main arguer
 Ruben Miranda (Other)
Instituto Politécnico de Lisboa Instituto Superior de Engenharia de Lisboa, Portugal
2019/07/25 Social network manager (BSc thesis)
(Thesis) Main arguer
 Mauro Almeida e Ruben Lopes (Other)
Instituto Politécnico de Lisboa Instituto Superior de Engenharia de Lisboa, Portugal
2018 Portagens em dispositivo móvel (BSc thesis)
President of the jury
 Fábio Lapa e Francisco Loureiro (Other)
Instituto Politécnico de Lisboa Instituto Superior de Engenharia de Lisboa, Portugal
2018 Microsistema de gestão de conteúdos e aplicação móvel genérica (BSc thesis)
(Thesis) Main arguer
 Renato Carvalho e Bruno Cardoso (Other)
Instituto Politécnico de Lisboa Instituto Superior de Engenharia de Lisboa, Portugal
2018 Aplicação móvel com aprendizagem para a ajuda a indivíduos com daltonia? Chrome Helper (BSc thesis)
(Thesis) Main arguer
 Daniel Feliciano, Edgar Alves e David Rito (Other)
Instituto Politécnico de Lisboa Instituto Superior de Engenharia de Lisboa, Portugal
2017/12/14 Utilização de eventos aplicacionais para análise de negócio em tempo real
(Thesis) Main arguer
 Victor Paulino (Master)
Instituto Politécnico de Lisboa Instituto Superior de Engenharia de Lisboa, Portugal
2017 Services Ranking (BSc thesis)
(Thesis) Main arguer
 Bruno Freitas e Edgar Demétrio (Other)
Instituto Politécnico de Lisboa Instituto Superior de Engenharia de Lisboa, Portugal
2017 Determinação de rotas para veículos em problemas com janelas temporais (BSc thesis)
(Thesis) Main arguer
 Lourenço Palma e Miguel Garrido (Other)
Instituto Politécnico de Lisboa Instituto Superior de Engenharia de Lisboa, Portugal
2017 Sistema de apoio a trabalho de campo de geologia? Geodroid (BSc thesis)
(Thesis) Main arguer
 Humberto Silva e João Silva (Other)
Instituto Politécnico de Lisboa Instituto Superior de Engenharia de Lisboa, Portugal
2017 Plataforma de notificações eletrónicas entre docentes e encarregados de educação ? eCaderneta (BSc thesis)
(Thesis) Main arguer
 Nuno Cardoso e Carolina Cândido (Other)
Instituto Politécnico de Lisboa Instituto Superior de Engenharia de Lisboa, Portugal
2016 Há Mesa ? Reserva e Gestão de Refeições em Restaurantes (BSc thesis)
(Thesis) Main arguer
 Carolina Morais e Hugo Estrompa (Other)
Instituto Politécnico de Lisboa Instituto Superior de Engenharia de Lisboa, Portugal
2016 ALSRM App, Visualização de Biosinais (BSc thesis)
(Thesis) Main arguer
 Tiago Bogalho e Nuno Malés (Other)
Instituto Politécnico de Lisboa Instituto Superior de Engenharia de Lisboa, Portugal
2015 Sistema de reaproveitamento de recursos alimentares (BSc thesis)
(Thesis) Main arguer
 Rafael Paulo, Tiago Amorim e David Rito (Other)
Instituto Politécnico de Lisboa Instituto Superior de Engenharia de Lisboa, Portugal
2014 Criação de música por meio de rede social (BSc thesis)
(Thesis) Main arguer
 David Macedo e Vítor Amaral (Other)
Instituto Politécnico de Lisboa Instituto Superior de Engenharia de Lisboa, Portugal
2014 Sistema de gestão de oficinas automóvel (BSc thesis)
(Thesis) Main arguer
 Tiago Agostinho e Diogo Bento (Other)
Instituto Politécnico de Lisboa Instituto Superior de Engenharia de Lisboa, Portugal
2014 Plataforma web para análise intuitiva de dados (BSc thesis)
(Thesis) Main arguer
 André Basílio e Diogo Dallot (Other)
Instituto Politécnico de Lisboa Instituto Superior de Engenharia de Lisboa, Portugal

Committee member

Activity description
Role 		Institution / Organization
2021 - Current ECTS ERASMUS+ coordinator, in the context of the MSc degree in Engenharia Informática e de Computadores
Coordinator
 Instituto Politécnico de Lisboa Instituto Superior de Engenharia de Lisboa, Portugal
2021 - Current ECTS ERASMUS+ coordinator, in the context of the BSc degree in Engenharia Informática e de Computadores Instituto Politécnico de Lisboa Instituto Superior de Engenharia de Lisboa, Portugal
2021 - Current Member of Technical - Scientific Council of the Instituto Superior de Lisboa
Member
 Instituto Politécnico de Lisboa Instituto Superior de Engenharia de Lisboa, Portugal
2018/06 - Current Member of the coordinating committee for the BSc in Engenharia Informática e de Computadores
Member
 Instituto Politécnico de Lisboa Instituto Superior de Engenharia de Lisboa, Portugal
2016 - Current Responsible for ERASMUS+ in the context of the BSc in Engenharia Informática e de Computadores Instituto Politécnico de Lisboa Instituto Superior de Engenharia de Lisboa, Portugal
2016 - 2020 Responsible for ERASMUS+ in the context of the MSc in Engenharia Informática e de Computadores Instituto Politécnico de Lisboa Instituto Superior de Engenharia de Lisboa, Portugal
2016 - 2017 Responsible for the Vasco Da Gama program in the context of the BSc in Engenharia Informática e de Computadores Instituto Politécnico de Lisboa Instituto Superior de Engenharia de Lisboa, Portugal

Course / Discipline taught

Academic session Degree Subject (Type) Institution / Organization
2012 - Current Algoritmos e Estruturas de dados (responsibility and lecturing) Engenharia Informática e de Computadores (Licenciatura) Instituto Politécnico de Lisboa Instituto Superior de Engenharia de Lisboa, Portugal
2013 - 2013 Professor in the program Development of Education and Organizational Skills in High Education Institutions ISEL, 2013, in the context of international exchange between Coreia do Sul and Portugal (Outros) Instituto Politécnico de Lisboa Instituto Superior de Engenharia de Lisboa, Portugal
2013 - 2013 Professor in the program ProDEOS-HEI: Professional Development of Education and Organizational Skills in High Education Institutions, no contexto do intercâmbio internacional Casaquistão-Portugal. (Outros) Instituto Politécnico de Lisboa Instituto Superior de Engenharia de Lisboa, Portugal

Evaluation committee

Activity description
Role 		Institution / Organization Funding entity
2020 - 2020 Reviewer for the European project fellowship program ELITE-S https://elite-fellowship.eu/, 2020, a Marie Sklodowska-Curie action
Evaluator

Other jury / evaluation

Activity description Institution / Organization
2016 - 2016 Member of the jury of the exams for the title of specialist of Professor Adjunto José Luís Falcão Cascalheira, ISEL, 2016 Instituto Politécnico de Lisboa Instituto Superior de Engenharia de Lisboa, Portugal
2014 - 2014 Jury member for transfers, course changes or special admission processes, 2014. Instituto Politécnico de Lisboa Instituto Superior de Engenharia de Lisboa, Portugal
2013 - 2013 Jury member for transfers, course changes or special admission processes, 2013. Instituto Politécnico de Lisboa Instituto Superior de Engenharia de Lisboa, Portugal
2012 - 2012 Jury member for transfers, course changes or special admission processes, 2012. Instituto Politécnico de Lisboa Instituto Superior de Engenharia de Lisboa, Portugal
2011 - 2011 Jury member for transfers, course changes or special admission processes, 2011. Instituto Politécnico de Lisboa Instituto Superior de Engenharia de Lisboa, Portugal
Distinctions

Other distinction

2012 Highly accessed article (BMC Bioinformatics) - PHYLOViZ: Phylogenetic inference and data visualization for sequence based typing methods