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Elsa Froufe is a Principal Investigator at CIIMAR, University of Porto. She earned her Biology Degree from Aveiro University in 1997 and achieved her PhD in Biology from Oporto University in 2006. Since 2010, Elsa Froufe has held the position of Team Leader of the Aquatic Ecology and Evolution group at CIIMAR, University of Porto. Due to her strong national and international network, she has been involved in dozens of national and international projects, including four funded projects as Principal Investigator. She supervised several postdoctoral researchers and students (PhD, MSc and BSc) and published more than 100 ISI-indexed publications with over 300 different co-authors. She frequently acts as a reviewer for the major journals in her field; regularly attends scientific meetings and workshops, has given several presentations, and has been involved in the organization of 10 of them (most also in the Scientific Comities). She has also been a grant reviewer for national and international funding agencies and an examiner in PhD and MSc evaluation committees, as well as for technician and research grant applicants. Elsa Froufe frequently uses multidisciplinary approaches, applies diverse molecular genetic/genomic markers and uses different biological models, in particular, fish and freshwater bivalves during the last years. Her main research interests are in the areas of biodiversity, population genetics and conservation. Her previous investigations resulted in important contributions to the understanding of historical and contemporary evolutionary forces that govern genetic variation in nature. In the last years, she has been more focused on several pressing issues such as global changes and impacts on ecosystem services, namely the impact of climate changes on the aquatic biodiversity.
Identificação

Identificação pessoal

Nome completo
Elsa Froufe

Nomes de citação

  • Froufe, Elsa
  • Froufe, E

Identificadores de autor

Ciência ID
2A1F-3002-6C5C
ORCID iD
0000-0003-0262-0791
Google Scholar ID
asG3qFwAAAAJ
Researcher Id
F-2286-2013
Scopus Author Id
6602824818

Websites

Domínios de atuação

  • Ciências Naturais - Ciências Biológicas - Biologia da Evolução das Espécies

Idiomas

Idioma Conversação Leitura Escrita Compreensão Peer-review
Português (Idioma materno)
Inglês Utilizador proficiente (C2) Utilizador proficiente (C2) Utilizador proficiente (C2) Utilizador proficiente (C2) Utilizador proficiente (C2)
Francês Utilizador independente (B1) Utilizador independente (B1) Utilizador independente (B1) Utilizador independente (B1) Utilizador independente (B1)
Formação
Grau Classificação
2003/01/01 - 2006/12/13
Concluído
Biologia (Doutoramento)
Especialização em Biologia Evolutiva
Universidade do Porto Faculdade de Ciências, Portugal
"Evolutionary history of Siberian Salmonids" (TESE/DISSERTAÇÃO)
1992 - 1997
Concluído
Biologia (Licenciatura)
Universidade de Aveiro Departamento de Biologia, Portugal
"Patterns of genetic variation in the golden-striped salamander, Chioglossa lusitanica" (TESE/DISSERTAÇÃO)
Percurso profissional

Ciência

Categoria Profissional
Instituição de acolhimento
Empregador
2023/01/01 - Atual Investigador principal (carreira) (Investigação) Universidade do Porto Centro Interdisciplinar de Investigação Marinha e Ambiental, Portugal
2009/12/01 - 2022/12/31 Investigador Auxiliar (carreira) (Investigação) Universidade do Porto Centro Interdisciplinar de Investigação Marinha e Ambiental, Portugal
2007/01/01 - 2009/11/30 Pós-doutorado (Investigação) Universidade do Porto Centro de Investigação em Biodiversidade e Recursos Genéticos, Portugal
Universidade do Porto Centro de Investigação em Biodiversidade e Recursos Genéticos, Portugal
Projetos

Projeto

Designação Financiadores
2019 - Atual COST Action - Conservation of freshwater mussels: a pan-European approach
CA18239
Investigador
European Cooperation in Science and Technology
Em curso
2021/01/01 - 2025/12/31 Centro de Investigação Marinha e Ambiental
Centro de Ciências do Mar, Portugal

Universidade do Porto Centro Interdisciplinar de Investigação Marinha e Ambiental, Portugal
Fundação para a Ciência e a Tecnologia
Em curso
2021/01/01 - 2025/12/31 Centre for Marine and Environmental Research
LA/P/0101/2020
Centro de Ciências do Mar, Portugal

Universidade do Porto Centro Interdisciplinar de Investigação Marinha e Ambiental, Portugal
Fundação para a Ciência e a Tecnologia
Em curso
2023/04/01 - 2025/03/31 MoRePorto - Monitorização e Restauro da Biodiversidade das Zonas Húmidas da Cidade do Porto
Investigador responsável
Universidade do Porto Centro Interdisciplinar de Investigação Marinha e Ambiental, Portugal
EDULOG Fundação Belmiro de Azevedo
Em curso
2023/01/01 - 2024/12/31 Red de colaboración iberchile: fortalecimiento de las ciencias del mar en un océano cambiante
FOVI220159
Investigador
Universidade de Vigo, Espanha

Universidade do Porto Centro Interdisciplinar de Investigação Marinha e Ambiental, Portugal
Em curso
2022/01/01 - 2024/12/31 MULTI-CRASH: Cascatas ecológicas a múltiplas dimensões desencadeadas por uma espécie invasora em habitats pristinos
PTDC/CTA-AMB/0510/2021
Universidade do Minho, Portugal

Universidade de Trás-os-Montes e Alto Douro, Portugal

Universidade do Porto Centro Interdisciplinar de Investigação Marinha e Ambiental, Portugal

Instituto Politécnico de Bragança, Portugal

Universidade do Porto Instituto de Ciências Tecnologias e Agroambiente, Portugal

Universidade de Vigo Facultad de Ciencias, Espanha

Universidade do Minho Centro de Biologia Molecular e Ambiental, Portugal
Fundação para a Ciência e a Tecnologia
Em curso
2023/03/12 - 2024/09/11 PerSeave - An omics multisensory perspective, how can human activities affect the sensory organs of deep-sea fish?
2022.04750.PTDC
Investigador
Instituto Español de Oceanografía Centro Oceanográfico de Cádiz, Espanha

Universidade de Vigo Facultad de Ciencias, Espanha

Universidade do Porto Centro Interdisciplinar de Investigação Marinha e Ambiental, Portugal
Fundação para a Ciência e a Tecnologia
Em curso
2021/03/01 - 2024/05/31 EdgeOmics - Freshwater Bivalves at the edge: Adaptation genomics under climate-change scenarios
PTDC/CTA-AMB/3065/2020
Investigador responsável
Universidade do Porto Faculdade de Desporto, Portugal

Universidade de Trás-os-Montes e Alto Douro Centro de Investigação e de Tecnologias Agro-Ambientais e Biologicas, Portugal

Universidade do Minho Centro de Biologia Molecular e Ambiental, Portugal

Université de Montréal, Canadá

Instituto Politécnico de Bragança, Portugal

Rede de Investigação em Biodiversidade e Biologia Evolutiva, Portugal

Universidade do Minho, Portugal

Universidade de Trás-os-Montes e Alto Douro, Portugal

Universidade do Porto Instituto de Ciências Tecnologias e Agroambiente, Portugal
Fundação para a Ciência e a Tecnologia
Em curso
2022/04/01 - 2023/09/30 ATLANTIDA - Platform for the monitoring of the North Atlantic Ocean and tools for the sustainable exploitation of the marine resources
2023_033_BI_ATLANTIDA
Investigador
Universidade do Porto Centro Interdisciplinar de Investigação Marinha e Ambiental, Portugal
Concluído
2017 - 2022 Reviving River Douro Basin
Investigador
Universidade do Porto Centro Interdisciplinar de Investigação Marinha e Ambiental, Portugal
MAVA Foundation
Em curso
2018/06 - 2021/05 ConBiomics: the missing approach for the Conservation of freshwater Bivalves
Investigador responsável
Universidade do Porto Centro Interdisciplinar de Investigação Marinha e Ambiental, Portugal
Fundação para a Ciência e a Tecnologia, I.P.
Em curso
2018 - 2021 The Sea and the Shore, Architecture and Marine Biology: The Impact of Sea Life on the Built Environment
Investigador
Universidade do Porto Centro Interdisciplinar de Investigação Marinha e Ambiental, Portugal
Fundação para a Ciência e a Tecnologia, I.P.
Em curso
2018 - 2021 SeeingShore: Understanding and predicting the impact of climate change on coastal habitats
PTDC/BIA-BMA/31893/2017
Investigador
Universidade do Porto Centro Interdisciplinar de Investigação Marinha e Ambiental, Portugal
Fundação para a Ciência e a Tecnologia, I.P.
Em curso
2016 - 2020 Breeding the most endangered bivalve on Earth: Margaritifera marocana
SOS Save Our Species Rapid Action 2015B-015
Investigador
Em curso
2019/01/01 - 2019/12/31 Centro Interdisciplinar de Investigação Marinha e Ambiental
UID/Multi/04423/2019
Universidade do Porto Centro Interdisciplinar de Investigação Marinha e Ambiental, Portugal
Fundação para a Ciência e a Tecnologia
Concluído
2016/04/01 - 2019/08/01 Multiple implications of invasive species on Freshwater Mussel coextinction processes.
PTDC/AGR-FOR/1627/2014
Universidade do Porto Faculdade de Desporto, Portugal

Universidade do Minho, Portugal

Universidade de Trás-os-Montes e Alto Douro, Portugal

Instituto Politécnico de Bragança, Portugal

Universidade do Porto Instituto de Ciências Tecnologias e Agroambiente, Portugal
Fundação para a Ciência e a Tecnologia
Concluído
2016/01 - 2018/12 FRESHCO: Multiple implications of invasive species on Freshwater Mussel coextinction processes.
Investigador
Fundação para a Ciência e a Tecnologia, I.P.
Concluído
2017 - 2018 Integrative Conservation Strategies for the Critically Endangered Freshwater Mussels in Tunisia before Their Dramatic Extinction
The Mohamed Bin Zayed Species Conservation Fund
Investigador
2016 - 2018 MarInfo - Integrated Platform for Marine Data Acquisition and Analysis
NORTE-01-0145-FEDER-000031
Investigador
Universidade do Porto Centro Interdisciplinar de Investigação Marinha e Ambiental, Portugal
Concluído
2016 - 2018 CORAL - Sustainable Ocean Exploitation: Tools and Sensors
NORTE-01-0145-FEDER-000036
Investigador
Universidade do Porto Centro Interdisciplinar de Investigação Marinha e Ambiental, Portugal
Concluído
2016 - 2018 INNOVMAR - Innovation and Sustainability in the Management and Exploitation of Marine Resources
NORTE-01-0145-FEDER-000035
Investigador
Universidade do Porto Centro Interdisciplinar de Investigação Marinha e Ambiental, Portugal
Concluído
2015 - 2017 BIOMETORE - Biodiversity in seamounts: the Madeira-Tore and Great Meteor
PT02_Aviso2_0001
Investigador
Concluído
2014 - 2016 SOS Peixes e Bivalves ameaçados do NE de Portugal
NORTE-09-0230-FEDER-000127
Investigador
Concluído
2012/03 - 2015/02 CONBI: Biodiversity and Conservation of Bivalves - ecogeographic, genetic and physiological information
Investigador responsável
Fundação para a Ciência e a Tecnologia, I.P.
2011/07 - 2014/06 SABOR FRAGMENTATION EXPERIMENT: UNDERTANDING LONG-TERM ECOLOGICAL CONSEQUENCES OF INFRASTRUCTURE DEVELOPMENT AND COMPENSATORY MITIGATION (SABOR-LTER)
Investigador
Fundação para a Ciência e a Tecnologia, I.P.
2013 - 2014 PAELORIS – Characterization and protection of native bivalve species in the Barrinha de Mira, Mira, Vela and Braças coastal lagoons
N/A
Investigador
Concluído
2013 - 2014 AQUAIMPROV - Sustainable Aquaculture and Animal Welfare
NORTE-07-0124-FEDER-000038
Investigador
Concluído
2010/03 - 2013/08 Diversification in the biomechanical and physiological performance of scorpions across biogeographic barriers
PTDC/BIA-BEC 104644-2008
Investigador
2010/02 - 2013/04 METALAND: Inferring Metapopulation Dynamics with Landscape Genetics for Vertebrates of Mauritanian Mountains
PTDC/BIA-BEC 099934-2008
Investigador
2011/01/01 - 2012/12/31 Strategic Project - LA 15 - 2011-2012
PEst-C/MAR/LA0015/2011
Centro de Ciências do Mar, Portugal

Universidade do Porto Centro Interdisciplinar de Investigação Marinha e Ambiental, Portugal
Fundação para a Ciência e a Tecnologia
Concluído
Produções

Publicações

Artigo em boletim informativo
  1. Riccardi, Nicoletta; Bo, Tiziano; Bogan, Arthur E.; Douda, Karel; Froufe, Elsa; Gonçalves, Duarte Vasconcelos; Lajtner, Jasna; et al. Autor correspondente: Riccardi, Nicoletta. "Chronicle of an announced extinction: Microcondylaea bonellii, the species not worth saving?", Tentacle : the newsletter of the IUCN/SSC Mollusc Specialist Group, 2022, https://portals.iucn.org/library/node/5599.
  2. Riccardi, Nicoletta; Olga Aksenova; Tiziano Bo; Arthur E. Bogan; Wendell R. Haag; Ekaterina Konopleva; Gonçalves, Duarte Vasconcelos; et al. Autor correspondente: Riccardi, Nicoletta. "Bad taxonomy and poor detectability has hindered Italian Unio conservation. The case of Unio elongatulus and Unio mancus, what is their real conservation status?", Tentacle : the newsletter of the IUCN/SSC Mollusc Specialist Group, 2022, https://portals.iucn.org/library/node/5599.
Artigo em conferência
  1. Garcia-Raventós, Aina; Martins, Filipa; Magalhães, Maria Filomena; Ramião, José; Ferreira, Mário; Carona, Sara; Carvalho, Francisco; et al. "Multiple introductions and first record of Phoxinus phoxinus in the Douro basin revealed by molecular data". 2018.
  2. Froufe, Elsa; Fonseca, Miguel M.; Teixeira, Amílcar; Varandas, Simone; Gonçalves, Duarte Vasconcelos; Hinzmann, Mariana; Arenas, Francisco; et al. "Conbiomics: the missing approach for the conservation of freshwater bivalves". 2018.
  3. Teixeira, Amílcar; Lopes-Lima, Manuel; Varandas, Simone; Froufe, Elsa; Sousa, Ronaldo; Teixeira, Amílcar; Lopes-Lima, Manuel; et al. "FRESHCO project ¿ preliminary results assessing the multiple implications of invasive species on freshwater mussel decline and coexistence processes". Trabalho apresentado em 1st Freshwater Mollusk Conservation Society Meeting in Europe, 2018.
  4. Riccardi, Nicoletta; Froufe, Elsa; Teixeira, Amílcar; Varandas, Simone; Moro, Giuseppe; Lopes-Lima, Manuel. "Freshwater mussels in Italy: from no-name species and no-right species to useless regulation". 2018.
  5. Teixeira, Amilcar; Froufe, Elsa; Varandas, Simone; Sousa, Ronaldo; Miranda, Fernando; Inssi, Hanane; Lopes-Lima, Manuel. "Threatened fish and mussel populations in Douro basin (Northern Portugal): in-situ and ex-situ conservation measures". 2017.
  6. Teixeira, Amílcar; Varandas, Simone; Froufe, Elsa; Lopes-Lima, Manuel; Sousa, Ronaldo. "FRESHCO: multiple implications of invasive species on freshwater mussel decline and coextinction processes". 2017.
  7. Teixeira, Amílcar; Varandas, Simone; Sousa, Ronaldo; Froufe, Elsa; Lopes-Lima, Manuel. "Bioecologia dos mexilhões de água doce (Unionidae) nos rios Sabor, Tua e Tâmega (Bacia do Douro, Portugal): principais ameaças e medidas de conservação". 2013.
  8. Teixeira, Amílcar; Varandas, Simone; Sousa, Ronaldo; Froufe, Elsa; Lopes-Lima, Manuel. "CONBI: Biodiversidade e conservação de bivalves ¿ informação ecogeográfica, genética e fisiológica.". 2012.
Artigo em revista
  1. Ana Matos; André Gomes-dos-Santos; Ümit Kebapçi; Mustafa Emre Gürlek; Elsa Froufe; Manuel Lopes-Lima. "The complete female mitogenome of Potomida semirugata (Lamarck, 1819)". Mitochondrial DNA Part B (2024): https://doi.org/10.1080/23802359.2024.2378964.
    10.1080/23802359.2024.2378964
  2. Ana Matos; Nair Vilas-Arrondo; André Gomes-dos-Santos; Ana Veríssimo; Esther Román-Marcote; Francisco Baldó; Jaime Moreno-Aguilar; et al. "The complete mitogenome of the Atlantic longnose chimaera Rhinochimaera atlantica (Holt & Byrne, 1909)". Mitochondrial DNA Part B (2024): https://doi.org/10.1080/23802359.2024.2378127.
    10.1080/23802359.2024.2378127
  3. Alexandra Zieritz; John Pfeiffer; Khairul Adha A Rahim; Hari Prayogo; Muhammad Sofwan Anwari; Farah Diba; Elsa Froufe; et al. "High endemic freshwater mussel (Bivalvia: Unionida) diversity in western Borneo, with description of three new species". Zoological Journal of the Linnean Society (2024): https://doi.org/10.1093/zoolinnean/zlae076.
    10.1093/zoolinnean/zlae076
  4. Ana Matos; André Gomes-dos-Santos; Amílcar Teixeira; Simone Varandas; Ronaldo Sousa; Ioannis Karaouzas; Stamatis Zogaris; Elsa Froufe; Manuel Lopes-Lima. "The complete mitochondrial genome of Potomida acarnanica (Kobelt, 1879)". Mitochondrial DNA Part B (2024): https://doi.org/10.1080/23802359.2024.2353271.
    10.1080/23802359.2024.2353271
  5. Giulia Secci-Petretto; Steven Weiss; André Gomes-dos-Santos; Henri Persat; André M. Machado; Inês Vasconcelos; L. Filipe C. Castro; Elsa Froufe. "A multi-tissue de novo transcriptome assembly and relative gene expression of the vulnerable freshwater salmonid Thymallus ligericus". Genetica (2024): https://doi.org/10.1007/s10709-024-00210-7.
    10.1007/s10709-024-00210-7
  6. Lopes-Lima, M.; Geist, J.; Egg, S.; Beran, L.; Bikashvili, A.; Van Bocxlaer, B.; Bogan, A.E.; et al. "Integrative phylogenetic, phylogeographic and morphological characterisation of the Unio crassus species complex reveals cryptic diversity with important conservation implications". Molecular Phylogenetics and Evolution 195 (2024): 108046. https://doi.org/10.1016/j.ympev.2024.108046.
    10.1016/j.ympev.2024.108046
  7. Englmaier, Gernot K.; Rodríguez, Nuria Viñuela; Bravnicar, Jernej; Zangl, Lukas; Persat, Henri; Maric, Saša; Ratschan, Clemens; et al. "SNP-based analysis of European Thymallus spp. (Salmonidae) reveals extensive mito-nuclear discordance relevant for biogeographic inferences, taxonomy and conservation". Diversity and Distributions 30 7 (2024): https://doi.org/10.1111/ddi.13845.
    10.1111/ddi.13845
  8. André Gomes-dos-Santos; Elza Fonseca; Nicoletta Riccardi; Mariana Hinzmann; Manuel Lopes-Lima; Elsa Froufe. "The transcriptome assembly of the European freshwater mussel Unio elongatulus C. Pfeiffer, 1825". Scientific Data (2024): https://doi.org/10.1038/s41597-024-03226-y.
    10.1038/s41597-024-03226-y
  9. Gomes-dos-Santos, André; Domingues, Marcos; Ruivo, Raquel; Fonseca, Elza; Froufe, Elsa; Deyanova, Diana; Franco, João N.; C. Castro, L. Filipe. Autor correspondente: C. Castro, L. Filipe. "An historical wreck: A transcriptome assembly of the naval shipworm, Teredo navalis Linnaeus, 1978". Marine Genomics 74 (2024): 101097. http://dx.doi.org/10.1016/j.margen.2024.101097.
    10.1016/j.margen.2024.101097
  10. Ana Matos; André Gomes-dos-Santos; Sofia Graça Aranha; Ester Dias; Ana Veríssimo; Alexandra Teodósio; Ivone Figueiredo; L. Filipe C. Castro; Elsa Froufe. "Dataset of the complete mitogenome of the deep-sea sailfin roughshark, Oxynotus paradoxus Frade, 1929". Data in Brief (2024): https://doi.org/10.1016/j.dib.2023.109836.
    10.1016/j.dib.2023.109836
  11. Douda, Karel; Zieritz, Alexandra; Vodáková, Barbora; Urbanska, Maria; Bolotov, Ivan N.; Marková, Jana; Froufe, Elsa; Bogan, Arthur E.; Lopes-Lima, Manuel. "Review of the globally invasive freshwater mussels in the genus Sinanodonta Modell, 1945". Hydrobiologia (2024): http://dx.doi.org/10.1007/s10750-023-05457-3.
    Publicado • 10.1007/s10750-023-05457-3
  12. da Fonseca, Rute R.; Campos, Paula F.; Rey-Iglesia, Alba; Barroso, Gustavo V.; Bergeron, Lucie A.; Nande, Manuel; Tuya, Fernando; et al. "Population Genomics Reveals the Underlying Structure of the Small Pelagic European Sardine and Suggests Low Connectivity within Macaronesia". Genes 15 2 (2024): 170. http://dx.doi.org/10.3390/genes15020170.
    10.3390/genes15020170
  13. André Gomes-dos-Santos; Nair Vilas-Arrondo; André M. Machado; Esther Román-Marcote; Jose Luís Del Río Iglesias; Francisco Baldó; Montse Pérez; et al. "Mitochondrial replication's role in vertebrate mtDNA strand asymmetry". Open Biology (2023): https://doi.org/10.1098/rsob.230181.
    10.1098/rsob.230181
  14. Rita F. T. Pires; Elsa Froufe; Giulia Secci-Petretto; Antonina dos Santos. "Report on the occurrence of the hydromedusa Odessia maeotica (Ostroumoff, 1896) in the north-eastern Atlantic revealed by citizen science and integrative taxonomy". Aquatic Ecology (2023): https://doi.org/10.1007/s10452-023-10071-5.
    10.1007/s10452-023-10071-5
  15. Lopes-Lima, Manuel; Reis, Joaquim; Alvarez, Maria G.; Anastácio, Pedro M.; Banha, Filipe; Beja, Pedro; Castro, Paulo; et al. "The silent extinction of freshwater mussels in Portugal". Biological Conservation 285 (2023): 110244. http://dx.doi.org/10.1016/j.biocon.2023.110244.
    10.1016/j.biocon.2023.110244
  16. André Gomes-dos-Santos; Elsa Froufe; John M. Pfeiffer; Nathan A. Johnson; Chase H. Smith; André M. Machado; L. Filipe C. Castro; et al. "A novel assembly pipeline and functional annotations for targeted sequencing: A case study on the globally threatened Margaritiferidae (Bivalvia: Unionida)". Molecular Ecology Resources (2023): https://doi.org/10.1111/1755-0998.13802.
    10.1111/1755-0998.13802
  17. Elsa Froufe; André Gomes-dos-Santos; Ana Matos; Jonathan Wilson; Salman Malakpourkolbadinezhad; Daniel D. Pereira; Randal Singer; L. Filipe C. Castro. "How complex is the hidden species diversity of the teleost Plotosus genus?". Ichthyological Research (2023): https://doi.org/10.1007/s10228-023-00924-2.
    10.1007/s10228-023-00924-2
  18. Sakina Neemuchwala; Nathan A. Johnson; John M. Pfeiffer; Manuel Lopes-Lima; André Gomes-dos-Santos; Elsa Froufe; David M. Hillis; Chase H. Smith. "Coevolution With Host Fishes Shapes Parasitic Life Histories in a Group of Freshwater Mussels (Unionidae: Quadrulini).". Bulletin of the Society of Systematic Biologists (2023): https://doi.org/10.18061/bssb.v2i1.8998.
    10.18061/bssb.v2i1.8998
  19. Arthur E. Bogan; Van Tu Do; Elsa Froufe; Manuel Lopes-Lima. "The Anodontini of Vietnam (Mollusca: Bivalvia: Unionidae: Unioninae) with the Description of a New Species". Diversity (2023): https://doi.org/10.3390/d15060710.
    10.3390/d15060710
  20. André Gomes-dos-Santos; Manuel Lopes-Lima; André M. Machado; Thomas Forest; Guillaume Achaz; Amílcar Teixeira; Vincent Prié; L. Filipe C. Castro; Elsa Froufe. "The Crown Pearl V2: an improved genome assembly of the European freshwater pearl mussel Margaritifera margaritifera (Linnaeus, 1758)". Gigabyte (2023): https://doi.org/10.46471/gigabyte.81.
    10.46471/gigabyte.81
  21. Janine P. da Silva; Duarte Vasconcelos Gonçalves; Aina Garcia-Raventós; Manuel Lopes-Lima; Simone Varandas; Elsa Froufe; Amílcar Teixeira; et al. "Joint species distribution models unveil co-occurrences between freshwater mussels and their fish hosts". Journal of Biogeography (2023): https://doi.org/10.1111/jbi.14565.
    10.1111/jbi.14565
  22. Nogueira, Joana Garrido; Lopes-Lima, Manuel; Beja, Pedro; Filipe, Ana Filipa; Froufe, Elsa; Gonçalves, Duarte V.; da Silva, Janine P.; et al. "Identifying freshwater priority areas for cross-taxa interactions". Science of The Total Environment 864 (2023): 161073. http://dx.doi.org/10.1016/j.scitotenv.2022.161073.
    10.1016/j.scitotenv.2022.161073
  23. Mucientes, G; Vilas Arrondo, N; Secci Petretto, G; Vázquez, U; Pin, X; López, A; Castro, LFC; Froufe, E. "First Confirmed Record of the Smalltooth Sand Tiger, Odontapis Ferox, in Galicia (NW Spain)". THALASSAS (2023):
    10.1007/s41208-023-00526-9
  24. Gomes-dos-Santos, A; Froufe, E; Machado, AM; Lajtner, J; Cernecky, J; Castro, LFC; Lima, ML. "A PacBio Hi-Fi Genome Assembly of the Painter's Mussel Unio pictorum (Linnaeus, 1758)". GENOME BIOLOGY AND EVOLUTION (2023):
    10.1093/gbe/evad116
  25. Giulia Secci-Petretto; Gernot K. Englmaier; Steven J. Weiss; Alexander Antonov; Henri Persat; Gael P.J. Denys; Tamara Schenekar; et al. "Evaluating a species phylogeny using ddRAD SNPs: Cyto-nuclear discordance and introgression in the salmonid genus Thymallus (Salmonidae)". Molecular Phylogenetics and Evolution (2022): https://doi.org/10.1016/j.ympev.2022.107654.
    10.1016/j.ympev.2022.107654
  26. Barros-García, David; Comesaña, Ángel Sebastián; Bañón, Rafael; Baldó, Francisco; Arronte, Juan Carlos; Froufe, Elsa; De Carlos, Alejandro. "Multilocus species delimitation analyses show junior synonyms and deep-sea unknown species of genus Gaidropsarus (Teleostei: Gadiformes) in the North Atlantic/Mediterranean Sea area". Marine Biology 169 10 (2022): http://dx.doi.org/10.1007/s00227-022-04118-8.
    10.1007/s00227-022-04118-8
  27. André Gomes-dos-Santos; André M. Machado; L. Filipe C. Castro; Vincent Prié; Amílcar Teixeira; Manuel Lopes-Lima; Elsa Froufe. "The gill transcriptome of threatened European freshwater mussels". Scientific Data (2022): https://doi.org/10.1038/s41597-022-01613-x.
    10.1038/s41597-022-01613-x
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  29. Nair Vilas-Arrondo; André Gomes-dos-Santos; Montse Pérez; Francisco Baldó; Ana Veríssimo; Diana Catarino; André M. Machado; et al. "A mitochondrial genome assembly of the opal chimaera, Chimaera opalescens Luchetti, Iglésias et Sellos 2011, using PacBio HiFi long reads". Mitochondrial DNA Part B (2022): https://doi.org/10.1080/23802359.2022.2044403.
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  30. "A genome assembly of the Atlantic chub mackerel (Scomber colias): a valuable teleost fishing resource". Gigabyte 2022 (2022): 1-21. http://dx.doi.org/10.46471/gigabyte.40.
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  31. Karaouzas, Ioannis; Gonçalves, Duarte; Riccardi, Nicoletta; Varandas, Simone; Froufe, Elsa; Zogaris, Stamatis; Lopes-Lima, Manuel. "First established population of the Chinese pond mussel Sinanodonta woodiana (Lea, 1834) (Bivalvia: Unionidae) in Greece". BioInvasions Records 11 1 (2022): 165-172. http://dx.doi.org/10.3391/bir.2022.11.1.16.
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  32. André Gomes-dos-Santos; Andreas Hagemann; Luísa Valente; Arne M. Malzahn; Óscar Monroig; Elsa Froufe; L. Filipe C. Castro. "Complete mitochondrial genome of the ragworm annelid Hediste diversicolor (of Müller, 1776) (Annelida: Nereididae)". Mitochondrial DNA Part B (2021): https://doi.org/10.1080/23802359.2021.1970644.
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  33. Lopes-Lima, Manuel; Gürlek, Mustafa Emre; Kebapçi, Ümit; Sereflisan, Hülya; Yanik, Telat; Mirzajani, Alireza; Neubert, Eike; et al. "Diversity, biogeography, evolutionary relationships, and conservation of Eastern Mediterranean freshwater mussels (Bivalvia: Unionidae)". Molecular Phylogenetics and Evolution 163 (2021): 107261. http://dx.doi.org/10.1016/j.ympev.2021.107261.
    10.1016/j.ympev.2021.107261
  34. Zieritz, Alexandra; Jainih, Leonardo; Pfeiffer, John; Rahim, Khairul Adha A.; Prayogo, Hari; Anwari, Muhammad Sofwan; Fikri, Arman Hadi; et al. "A new genus and two new, rare freshwater mussel (Bivalvia: Unionidae) species endemic to Borneo are threatened by ongoing habitat destruction". Aquatic Conservation: Marine and Freshwater Ecosystems (2021): http://dx.doi.org/10.1002/aqc.3695.
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  35. "The Crown Pearl: a draft genome assembly of the European freshwater pearl mussel Margaritifera margaritifera (Linnaeus, 1758)". DNA Research 28 2 (2021): http://dx.doi.org/10.1093/dnares/dsab002.
    10.1093/dnares/dsab002
  36. David Barros-García; André Gomes-dos-Santos; André M. Machado; L. Filipe C. Castro; Alejandro de Carlos; Rafael Bañón; Isabel Bruno; Juan C. Arronte; Elsa Froufe. "Complete mitogenome of the Oven's halosaur, Halosaurus ovenii (Elopomorpha; Notacanthiformes)". Mitochondrial DNA Part B 6 4 (2021): 1571-1572. https://doi.org/10.1080/23802359.2021.1914518.
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  37. da Fonseca, Rute ; Campos, Paula ; Rey de la Iglesia, Alba; Barroso, , Gustavo; Bergeron, Lucie ; Nande, Manuel; Tuya, Fernando; et al. "Low coverage whole genome sequencing reveals the underlying structure of European sardine populations". (2021): https://doi.org/10.22541/au.161628445.52373083/v1.
  38. André Gomes-dos-Santos; André M. Machado; Sofia Graça Aranha; Ester Dias; Ana Veríssimo; L. Filipe C. Castro; Elsa Froufe. "The complete mitochondrial genome of the endemic Iberian pygmy skate Neoraja iberica Stehmann, Séret, Costa, & Baro 2008 (Elasmobranchii, Rajidae)". Mitochondrial DNA Part B 6 3 (2021): 848-850. https://doi.org/10.1080/23802359.2021.1884030.
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  39. André Gomes-dos-Santos; Nair Vilas-Arrondo; André M. Machado; Ana Veríssimo; Montse Pérez; Francisco Baldó; L. Filipe C. Castro; Elsa Froufe. "Shedding light on the Chimaeridae taxonomy: the complete mitochondrial genome of the cartilaginous fish Hydrolagus mirabilis (Collett, 1904) (Holocephali: Chimaeridae)". Mitochondrial DNA Part B (2021): https://doi.org/10.1080/23802359.2020.1870887.
    10.1080/23802359.2020.1870887
  40. Zieritz, Alexandra; Froufe, Elsa; Bolotov, Ivan; Gonçalves, Duarte V; Aldridge, David C; Bogan, Arthur E; Gan, Han Ming; et al. "Mitogenomic phylogeny and fossil-calibrated mutation rates for all F- and M-type mtDNA genes of the largest freshwater mussel family, the Unionidae (Bivalvia)". Zoological Journal of the Linnean Society 193 3 (2020): 1088-1107. http://dx.doi.org/10.1093/zoolinnean/zlaa153.
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  41. Joana Azevedo; Jorge T. Antunes; André M. Machado; Vitor Vasconcelos; Pedro N. Leão; Elsa Froufe. "Monitoring of biofouling communities in a Portuguese port using a combined morphological and metabarcoding approach". Scientific Reports 10 1 (2020): https://doi.org/10.1038/s41598-020-70307-4.
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  42. André M. Machado; Antonio Muñoz-Merida; Elza Fonseca; Ana Veríssimo; Rui Pinto; Mónica Felício; Rute R. da Fonseca; Elsa Froufe; L. Filipe C. Castro. "Liver transcriptome resources of four commercially exploited teleost species". Scientific Data 7 1 (2020): https://doi.org/10.1038/s41597-020-0565-9.
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  43. Nair Vilas Arrondo; André Gomes-dos-Santos; Esther Román Marcote; Montse Pérez; Elsa Froufe; L. Filipe C. Castro. "A new gene order in the mitochondrial genome of the deep-sea diaphanous hatchet fish Sternoptyx diaphana Hermann, 1781 (Stomiiformes: Sternoptychidae)". Mitochondrial DNA Part B (2020): https://doi.org/10.1080/23802359.2020.1790325.
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  44. João Teiga-Teixeira; Elsa Froufe; André Gomes-dos-Santos; Arthur E. Bogan; Alexander Y. Karatayev; Lyubov E. Burlakova; David C. Aldridge; et al. "Complete mitochondrial genomes of the freshwater mussels Amblema plicata (Say, 1817), Pleurobema oviforme (Conrad, 1834), and Popenaias popeii (Lea, 1857) (Bivalvia: Unionidae: Ambleminae)". Mitochondrial DNA Part B (2020): https://doi.org/10.1080/23802359.2020.1791008.
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  45. Moreira, Cláudia; Presa, Pablo; Correia, Alberto Teodorico; Vaz-Pires, Paulo; Froufe, Elsa. "Spatio-temporal microsatellite data suggest a multidirectional connectivity pattern in the Trachurus picturatus metapopulation from the Northeast Atlantic". Fisheries Research 225 (2020): 105499. http://dx.doi.org/10.1016/j.fishres.2020.105499.
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  48. David Barros-García; André Gomes-dos-Santos; André M. Machado; L. Filipe C. Castro; Alejandro de Carlos; Rafael Bañón; Isabel Bruno; Juan C. Arronte; Elsa Froufe. "Complete mitogenome of the shortfin spiny eel, Notacanthus bonaparte (Elopomorpha; Notacanthiformes)". Mitochondrial DNA Part B (2020): https://doi.org/10.1080/23802359.2020.1736672.
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  50. André Gomes-dos-Santos; Manuel Nande; Luis A. Espinoza-Ramos; Renzo G. Pepe-Victoriano; Zumilda Contreras-Mamani; Jordan I. Huanacuni; J. Miguel Quispe-Mayta; et al. "Constructing the mitochondrial genome of the Peruvian grunt Anisotremus scapularis Tschudi, 1846 (Lutjaniformes: Haemulidae) using RNA-seq data". Mitochondrial DNA Part B (2020): https://doi.org/10.1080/23802359.2020.1754950.
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  51. Lopes-Lima, Manuel; Hinzmann, Mariana; Varandas, Simone; Froufe, Elsa; Reis, Joaquim; Moreira, Cláudia; Araújo, Sandra; et al. "Setting the stage for new ecological indicator species: A holistic case study on the Iberian dolphin freshwater mussel Unio delphinus Spengler, 1793". Ecological Indicators 111 (2020): 105987. http://dx.doi.org/10.1016/j.ecolind.2019.105987.
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  52. Klunzinger, M. W.; Lopes-Lima, Manuel; Gomes-dos-Santos, Andre; Froufe, Elsa; Lymbery, A. J.; Kirkendale, L.. "Phylogeographic study of the West Australian freshwater mussel, Westralunio carteri, uncovers evolutionarily significant units that raise new conservation concerns". Hydrobiologia (2020): http://dx.doi.org/10.1007/s10750-020-04200-6.
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  53. Bárbara Frazão; Elsa Froufe; Andreia Fernandes; Aldo Barreiro; Vitor Vasconcelos; Agostinho Antunes. "Genetic records of intertidal sea anemones from Portugal". Regional Studies in Marine Science 34 (2020): 101067-101067. https://doi.org/10.1016%2Fj.rsma.2020.101067.
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  154. Froufe, E.; Knizhin, I.; Koskinen, M. T.; Primmer, C. R.; Weiss, S.. "Identification of reproductively isolated lineages of Amur grayling (Thymallus grubii Dybowski 1869): concordance between phenotypic and genetic variation". Molecular Ecology 12 9 (2003): 2345-2355.
    10.1046/j.1365-294X.2003.01901.x
  155. Alekseyev, S.; Alexandrino, P.; Froufe, E.; Knizhin, I.; Weiss, S.. "Comparative phylogeography of salmonid fishes (Salmonidae) reveals late to post-Pleistocene exchange between three now-disjunct river basins in Siberia". Diversity and Distributions 9 4 (2003): 269-282.
    10.1046/j.1472-4642.2003.00024.x
  156. Froufe, E.; Magyary, I.; Lehoczky, I.; Weiss, S.. "mtDNA sequence data supports an Asian ancestry and single introduction of the common carp into the Danube Basin". Journal of Fish Biology 61 1 (2002): 301-304. http://dx.doi.org/10.1111/j.1095-8649.2002.tb01756.x.
    10.1111/j.1095-8649.2002.tb01756.x
  157. Alexandrino, J.; Froufe, E.; Arntzen, J.W.; Ferrand, N.; Arntzen, J. W.. "Genetic subdivision, glacial refugia and postglacial recolonization in the golden-striped salamander, Chioglossa lusitanica (Amphibia: Urodela)". Molecular Ecology 9 6 (2000): 771-781. http://www.scopus.com/inward/record.url?eid=2-s2.0-0034130752&partnerID=MN8TOARS.
    Publicado • 10.1046/j.1365-294X.2000.00931.x
Capítulo de livro
  1. Riccardi, Nicoletta; Bo, Tiziano; Bogan, Arthur E.; Douda, Karel; Froufe, Elsa; Gonçalves, Duarte V.; Lajtner, Jasna; et al. Autor correspondente: Riccardi, Nicoletta. "Microcondylaea bonellii, a Testimonial for Neglected Endangered Species". In Reference Module in Earth Systems and Environmental Sciences. Elsevier, 2021.
    10.1016/b978-0-12-821139-7.00180-x
Livro
  1. Froufe, Elsa; Cabezas, Patricia; Alexandrino, Paulo; Pérez-Losada, Marcos. Comparative phylogeography of three achelate lobster species fromMacaronesia (northeast Atlantic). CRC Press. 2011.
    10.1201/b11113-10
Poster em conferência
  1. Froufe, Elsa; Lopes-Lima, Manuel; Teixeira, Amílcar; Gomes-dos-Santos, André; Fonseca, E; Österling, Martin; Riccardi, Nicoletta; et al. "Genomics in a Changing World: Conservation, Invasive Species, and Climate Change". Trabalho apresentado em SMBE Everywhere series, 2023.
  2. Gomes-dos-Santos, André; Froufe, Elsa; Andre M. Machado; Jasna Latjner; Ján Cernecký; C. Castro, L. Filipe; Lopes-Lima,. "A PacBio Hi-Fi genome assembly of the Painter's Mussel Unio pictorum (Linnaeus, 1758)". Trabalho apresentado em SOCIETY FOR MOLECULAR BIOLOGY AND EVOLUTION - SMBE 2023, 2023.
  3. Elsa Froufe; Lopes-Lima, Manuel; Teixeira, Amilcar; Gomes-dos-Santos, André; Fonseca, Elza; Martin Österling; Riccardi,. "EdgeOmics - Freshwater Bivalves at the edge: Adaptation genomics under climate-change scenarios". Trabalho apresentado em GS8: Genomics in a Changing World: Conservation, Invasive Species, and Climate Change, 2023.
  4. Gomes-dos-Santos, André; Elsa Froufe; Andre M. Machado; Luis Filipe C. Castro; Vincent Prié; Lopes-Lima, Manuel. "The PacBio Hi-Fi genome assembly of the delicate freshwater mussel Unio mancus Lamarck". Trabalho apresentado em Biodiversity Genomics 2022, 2022.
  5. Gomes-dos-Santos, André; Lopes-Lima, Manuel; Andre M. Machado; Amilcar Teixeira; Luis Filipe C. Castro; Elsa Froufe. "The PacBio Hi-Fi genome assembly of the Iberian dolphin freshwater mussel Unio delphinus". Trabalho apresentado em Biodiversity Genomics 2022, 2022.
  6. Gomes-dos-Santos, André; Lopes-Lima, Manuel; Andre M. Machado; Luis Filipe C. Castro; Thomas Forest; Guillaume Achaz; Am. "The Crown Pearl V2: the improved genome assembly of the European freshwater pearl mussel Margaritifera margaritifera (Linnaeus, 1758)". Trabalho apresentado em Biodiversity Genomics 2022, 2022.
  7. Andre M. Machado; Silva, F.C.; Ferraz, R.; Ruivo, R.; Fonseca, E.; Santos, M.; Páscoa, I.; et al. "PPAR gamma evolution in teleosts: gene duplication, retention, and loss.". Trabalho apresentado em XII Congress of Asociación Ibérica de Endocrinologia Comparada (AIEC 2019), 2019.
  8. Gomes-dos-Santos, André; Lopes-Lima, Manuel; Andre M. Machado; Amilcar Teixeira; Luis Filipe C. Castro; Elsa Froufe. "Molluscan Genomics: The road so far and the way forward". Trabalho apresentado em Congress: Pearls of wisdom: synergising leadership and expertise in molluscan genomics. Theo Murphy international scientific meeting, 2019.
    10.1007/s10750-019-04111-1
  9. Teixeira A; Lopes-Lima, Manuel; Varandas S; Froufe, E; Sousa R. "FRESHCO Project: Preliminary results assessing multiple implications of invasive species on freshwater mussel decline and coextinction processes.". Trabalho apresentado em 1st FMCS International Freshwater Mollusk Meeting, 2018.
  10. Sousa, Ronaldo; Teixeira A., Lopes-Lima M., Varandas S., Froufe E.. "Freshco project: Preliminary results assessing the multiple implications of invasive species on freshwater mussel decline and coextinction processes". Trabalho apresentado em FMCS International Freshwater Mollusk Meeting, 2018.
  11. Klishko O; Lopes-Lima, Manuel; Froufe, E; Bogan A; Vasilieva L. "Taxonomic examination of the Unio species (Bivalvia, Unionidae) from Russia and Ukraine based upon morphological and molecular data.". Trabalho apresentado em 2nd International Meeting on Biology and Conservation of Freshwater Bivalves, 2015.
  12. Froufe, Elsa; Teixeira, Amílcar; Varandas, S.; Sousa, R.; Lopes-Lima, M.. "Threatened Fish and Mussel Populations of Northern Portugal (Douro Basin): Applying in-situ and ex-situ conservation measures". Trabalho apresentado em XV European Congress of Ichthyology (ECIXV), 2015.
  13. Teixeira A., Varandas S., Sousa R., Froufe E. & Lopes-Lima M.. "Threatened fish and mussel populations of northern Portugal (Douro Basin): Developing conservation measures". Trabalho apresentado em Second International Meeting on Biology and Conservation of Freshwater Bivalves, 2015.
  14. Froufe E., Teixeira A., Varandas S., Sousa R. & Lopes-Lima M.. "Threatened fish and mussel populations of northern Portugal (Douro basin): applying in-situ and ex-situ conservation measures". Trabalho apresentado em XV European Congress of Ichthyology, 2015.
  15. Ng P.-Y., Lopes-Lima M, Zieritz A., Froufe E., Bogan A., Sousa R. & Wilson J.J.. ""Placing the freshwater bivalves (Unionoida) of Peninsular Malaysia on the bivalve tree of life."". Trabalho apresentado em 6th International Barcode of Life Conference, 2015.
  16. Lopes-Lima M., Sousa R., Teixeira A., Varandas S., Riccardi N., Aldridge D.C. & Froufe E.. "Newly developed microsatellite markers for the pan-European duck mussel, Anodonta anatina: revisiting the main mitochondrial lineages". Trabalho apresentado em 7th Congress of the European Malocological Societies, 2014.
    10.1002/aqc.2575
  17. Lopes-Lima, Manuel; Teixeira A; Hinzmann M; Varandas S; Sousa R; Froufe, E; Machado J. "Host Fish Limitation, an additional threat to the imperiled naiads in Europe: A case study on Unio delphinus and Potomida littoralis". Trabalho apresentado em World Congress of Malacology, 2013.
  18. Faria, Joao ; Pérez-Losada, Marcos; Froufe, Elsa. "Low genetic differentiation in three exploited crustaceans from NE Atlantic/ Mediterranean - Conservation and management implications". Trabalho apresentado em The Crustacean Society - Summer Meeting, 2013.
  19. Froufe, Elsa; Teixeira, Amílcar; Lopes, Anabela; Cardoso J; Reis J; Machado J; Hinzmann M; et al. "CONBI: Biodiversity and Conservation of Bivalves of Iberia (Southern Europe): Ecogeographic, Genetic and Physiological Information.". Trabalho apresentado em 8th International Symposium of the Freshwater Mollusk Conservation Society., 2013.
  20. Lopes-Lima M., Teixeira A., Hinzmann M., Varandas S., Froufe E., Sousa R. & Machado J.. "Host fish limitation, an additional threat to the imperilled naiads in Europe: a case study on Unio delphinus and Potomida littoralis". Trabalho apresentado em World Congress of Malacology, 2013.
  21. Froufe E., Sobral C., Teixeira A., Sousa R., Varandas S., Aldridge D. & Lopes-Lima M. "Anodonta anatina COI mtDNA phylogeography: starting point of the species’ evolutionary history disentangling". Trabalho apresentado em Freshwater Mollusk Conservation Society 2013 Symposium, 2013.
  22. Froufe E., Teixeira A., Lopes A., Cardoso J., Reis J., Machado J., Hinzmann M., Fonseca M., Araujo R., Sousa R., Sobral.. "CONBI: Biodiversity and Conservation of Bivalves – Ecogeographic, Genetic and Physiological information. Freshwater Mollusk". Trabalho apresentado em Freshwater Mollusk Conservation Society 2013 Symposium, 2013.
  23. Teixeira A., Lopes-Lima M., Sousa R., Froufe E., Varandas S. "Impacts of small weirs in Margaritifera margaritifera (L.) populations in Rivers Rabaçal and Tuela (Tua basin, Portugal)". Trabalho apresentado em 7th National Congress of Forests, 2013.
  24. Teixeira A., Varandas S., Sousa R., Froufe E., Lopes-Lima M.. "Bioecology of freshwater mussels (Unionidae) in Rivers Sabor, Tua and Tâmega (Douro basin, Portugal): main threats and conservation measures". Trabalho apresentado em 7th National Congress of Forests, 2013.
  25. Froufe, Elsa; Teixeira, Amílcar; Lopes, Anabela; Cardoso, Jorge; Reis, Joaquim; Machado, Jorge; Hinzmann, Mariana; et al. "CONBI: Biodiversity and Conservation of Bivalves ¿ Ecogeographic, Genetic and Physiological information.". Trabalho apresentado em International Meeting on Biology and Conservation of Freshwater Bivalves, 2012.
  26. Froufe E., Sobral C., Teixeira A., Lopes A., Sousa R., Varandas S. & Lopes-Lima M.. "Development of microsatellite markers and Multiplexed PCR for Potomida littoralis". Trabalho apresentado em Second International Meeting on Biology and Conservation of Freshwater Bivalves, 2012.
  27. Froufe E., Lopes A., Sobral C., Teixeira A., Sousa R., Varandas S., Araujo R., Machado J. & Lopes-Lima M. "Isolation and characterization of microsatellite loci for Unio delphinus and cross-species amplification in other Unio species". Trabalho apresentado em International Meeting on Biology and Conservation of Freshwater Bivalves, 2012.
Pré-impressão
  1. Giulia Secci-Petretto; Steven Weiss; André Gomes-dos-Santos; Henri Persat; André M. Machado; Inês Vasconcelos; L. Filipe C. Castro; Elsa Froufe. "A multi-tissuede novotranscriptome assembly and relative gene expression of the vulnerable freshwater salmonidThymallus ligericus". 2024. https://doi.org/10.1101/2024.03.21.586089.
    10.1101/2024.03.21.586089
  2. Gomes-dos-Santos André; Lopes-Lima Manuel; Machado M. André; Teixeira Amílcar; C. Castro L. Filipe; Froufe Elsa. "PacBio Hi-Fi genome assembly of the Iberian dolphin freshwater musselUnio delphinusSpengler, 1793". 2023. https://doi.org/10.1101/2023.01.16.524251.
    10.1101/2023.01.16.524251
  3. André Gomes-dos-Santos; Manuel Lopes-Lima; André M. Machado; Thomas Forest; Guillaume Achaz; Amílcar Teixeira; Vincent Prié; L. Filipe C. Castro; Elsa Froufe. "The Crown Pearl V2: an improved genome assembly of the European freshwater pearl musselMargaritifera margaritifera(Linnaeus, 1758)". 2023. https://doi.org/10.1101/2023.02.11.528107.
    10.1101/2023.02.11.528107
  4. André Gomes-dos-Santos; Nair Vilas-Arrondo; André M. Machado; Esther Román-Marcote; Jose Luís Del Río Iglesias; Francisco Baldó; Montse Pérez; et al. "Rare but not absent: the Inverted Mitogenomes of Deep-Sea Hatchetfish". 2023. https://doi.org/10.1101/2023.06.12.544378.
    10.1101/2023.06.12.544378
Recurso online
  1. Teixeira, Amílcar; Crespí, António Maria Luis ; Santos, Cátia ; Froufe, Elsa; Lopes- Lima, Manuel; Sousa, Ronaldo; Hinzmann, Mariana; et al. Outreach from Project Projeto PAELORIS : ¿RIAS, ESTUÁRIOS E LAGOAS DE PORTUGAL ¿ CONHECER E CONSERVAR¿ from InAqua Fundo de Conservação by Oceanário de Lisboa e National Geographic Channel. 2014. https://www.cm-mira.pt/node/380.
Relatório
  1. Filipe, A.F.; Garcia-Raventós, Aina; Martins, Filipa; NOGUEIRA, JOANA GARRIDO; Teixeira, Amílcar; Miranda, Fernando; Teixeira, Fernando; et al. 2022. The conservation status of freshwater species and habitats in Key Biodiversity Areas (KBAs) at the Douro river basin. IUCN Centre for Mediterranean Cooperation. https://portals.iucn.org/library/node/50663..
Resumo em conferência
  1. Fonseca, E; Silva, Beatriz; Gomes-dos-Santos, André; Machado, André; Pinto, Rui; C. Castro, L. Filipe; Froufe, Elsa. "Genomic Adaptations Associated with Climate Change and Biological Changes in the unionid mussel Unio delphinus (Spengler, 1793)". Trabalho apresentado em SMBE23, Ferrara, 2023.
    No prelo
  2. Pinheiro, João; Gomes-dos-Santos, André; C. Castro, L. Filipe; Froufe, Elsa; Fonseca, Elza. "Nuclear receptors and the mussels that "don't get better with butter"". Trabalho apresentado em IJUP 2023, Porto, 2023.
    No prelo
  3. Dromby, M.; Dias, E.; Ferreira, R.; Baptista, V.; Correia, Ana M.; GIL, Á.; Tejerina, R.; et al. "Using RNA/DNA ratios and carbon/nitrogen stable isotopes to assess the nutritional condition and trophic ecology of two cetacean species in an oceanic habitat". Trabalho apresentado em WMMC / ECS Conference, Barcelona, 2019.
    Publicado

Outros

Conjunto de dados
  1. Froufe, Elsa. Liver transcriptome resources of four commercially exploited teleost species.
    10.6084/m9.figshare.9033965
  2. Froufe, Elsa. Liver transcriptome resources of four commercially exploited teleost species.
    10.6084/m9.figshare.9033965.v3
  3. André Gomes-dos-Santos; André M. Machado; Luis Filipe Castro; Vincent Prié; Amílcar Teixeira; Manuel Lopes-Lima; Elsa Froufe. “Take Five”: The gill transcriptome of threatened European freshwater mussels.
    10.6084/m9.figshare.19787566.v1
  4. André Gomes-dos-Santos; Manuel Lopes-Lima; André Machado; Thomas Forest; Guillaume Achaz; Amílcar Teixeira; Vincent Prié; Luis Filipe Castro; Elsa Froufe. The Crown Pearl V2: an improved genome assembly of the European freshwater pearl mussel Margaritifera margaritifera (Linnaeus, 1758).
    10.6084/m9.figshare.22048250.v1
  5. André Gomes-dos-Santos; Manuel Lopes-Lima; André Machado; Thomas Forest; Guillaume Achaz; Amílcar Teixeira; Vincent Prié; Luis Filipe Castro; Elsa Froufe. The Crown Pearl V2: an improved genome assembly of the European freshwater pearl mussel Margaritifera margaritifera (Linnaeus, 1758).
    10.6084/m9.figshare.22048250
  6. Giulia Secci-Petretto; Steven J. Weiss; Gomes-dos-Santos, André; Henri Persat; Andre M. Machado; Inês Vasconcelos; C. Castro, L. Filipe; Froufe, Elsa. A multi-tissue de novo transcriptome assembly of the vulnerable freshwater salmonid Thymallus ligericus. figshare.
  7. Andre M. Machado; Gomes-dos-Santos, André; Miguel M. Fonseca; Rute R. da Fonseca; Ana Veríssimo; Felício, Mónica; Ricardo Capela; et al. A draft genome assembly of the Atlantic chub mackerel (Scomber colias) using Illumina and Pacbio Hifi reads. figshare.
    10.6084/m9.figshare.17025506.v4
  8. Gomes-dos-Santos, André; Lopes-Lima, Manuel; Andre M. Machado; Marcos Ramos, António; Usié, Ana; Ivan N Bolotov; Ilya V Vikhrev; et al. Margaritifera margaritifera whole genome assembly and annotation.
    10.6084/m9.figshare.13333841
  9. André Gomes-dos-Santos; Marcos Domingues; Raquel Ruivo; Elsa Froufe; Diana Deyanova; João N. Franco; Luis Filipe Castro. An historical “wreck”: a transcriptome assembly of the naval shipworm, Teredo navalis Linnaeus, 1978. 2023.
    10.6084/m9.figshare.24182502.v1
Outra produção
  1. High endemic freshwater mussel (Bivalvia: Unionida) diversity in western Borneo, with description of three new species. 2024. Alexandra Zieritz; John Pfeiffer; Khairul Adha A Rahim; Hari Prayogo; Muhammad Anwari; Farah Diba; Elsa Froufe; et al.
    10.60692/dxz98-83s42
  2. High endemic freshwater mussel (Bivalvia: Unionida) diversity in western Borneo, with description of three new species. 2024. Alexandra Zieritz; John Pfeiffer; Khairul Adha A Rahim; Hari Prayogo; Muhammad Anwari; Farah Diba; Elsa Froufe; et al.
    10.60692/n8vsa-qr526
  3. A novel assembly pipeline and functional annotations for targeted sequencing: A case study on the globally threatened Margaritiferidae (Bivalvia: Unionida). 2023. André Gomes-dos-Santos; Elsa Froufe; John Pfeiffer; Nathan Johnson; Chase Smith; André M. Machado; Luis Filipe Castro; et al.
    10.60692/69a4p-awx66
  4. A novel assembly pipeline and functional annotations for targeted sequencing: A case study on the globally threatened Margaritiferidae (Bivalvia: Unionida). 2023. André Gomes-dos-Santos; Elsa Froufe; John Pfeiffer; Nathan Johnson; Chase Smith; André M. Machado; Luis Filipe Castro; et al.
    10.60692/cj10p-nw606
  5. A new genus and two new, rare freshwater mussel (Bivalvia: Unionidae) species endemic to Borneo are threatened by ongoing habitat destruction. 2021. Alexandra Zieritz; Leonardo Jainih; John Pfeiffer; Khairul Adha A Rahim; Hari Prayogo; Muhammad Anwari; Arman Hadi Fikri; et al.
    10.60692/rvs44-hx830
  6. A new genus and two new, rare freshwater mussel (Bivalvia: Unionidae) species endemic to Borneo are threatened by ongoing habitat destruction. 2021. Alexandra Zieritz; Leonardo Jainih; John Pfeiffer; Khairul Adha A Rahim; Hari Prayogo; Muhammad Anwari; Arman Hadi Fikri; et al.
    10.60692/bt5e1-4dy98
Atividades

Apresentação oral de trabalho

Título da apresentação Nome do evento
Anfitrião (Local do evento)
2023 Insight into the graylings world: nuclear perspective based on ddRAD-seq Blue Think Conference
2021 Phylogeny of the thick-shelled river mussel Unio crassus Philipsson, 1788 (Bivalvia Unionidae) in the genomic era Blue Think Conference 2020
Interdisciplinary Centre of Marine and Environmental Research (CIIMAR) (Matosinhos, Portugal)
2020 The importance of basic biological studies to define good ecological and physiological status of freshwater bivalves. XX Congress of the Iberian Association of Limnology (AIL-2020) e III Ibero-american Congress of Limnology (CIL-2020)
(Murcia, Espanha)
2020 Assessing genetic diversity within Thymallus trough genomic approaches Blue Think Conference 2020
2020 Mitogenomic Phylogeny of Freshwater Mussels (Bivalvia: Unionida) Blue Think Conference 2020
2019 Mitogenome Phylogeny of Thymallus (graylings) - Species delineation ECI XVI EUROPEAN CONGRESS OF ICHTHYOLOGY
(Lausanne, Suiça)
2019 Freshwater conservation assessments in (semi-)arid regions: testing river intermittence and buffer strategies using freshwater mussels (Bivalvia, Unionida) in Morocco Trends in Biodiversity TiBe 2019 - Biodiversity, Ecology and Evolution in Mediterranean Ecosystems
2019 Margaritiferidae Revisited World Congress of Malacology
(Monterey, Estados Unidos)
2019 Expansion And Redefinition of The Margaritiferidae 11th International Symposium of the Freshwater Mollusk Conservation Society
(Santo Antonio, Estados Unidos)
2019 Freshwater Mussels (Bivalvia: Unionidae) From the Rising Sun (Far East Asia): Phylogeny, Systematics and Distribution 11th International Symposium of the Freshwater Mollusk Conservation Society
(Santo Antonio, Estados Unidos)
2019 Re-Discovery of Anodonta cf. lucasi In Tunisia: Taxonomic Evaluation Based on Molecular and Morphological Data 1st FMCS International Freshwater Mollusk Meeting
(Verbania)
2018 Diversity and Biogeography of freshwater bivalves at the global scale: Threats, Research and Conservation 1st FMCS International Freshwater Mollusk Meeting
(Verbania)
2018 Freshwater Mussels in Italy: From No-Name Species and No-Right Species to Useless Regulation 1st FMCS International Freshwater Mollusk Meeting
(Verbania)
2017 FRESHCO: Multiplas implicações de espécies invasoras nos processos de co-extinção de mexilhões de água-doce 8º Congresso Florestal Nacional

Orientação

Título / Tema
Papel desempenhado
Curso (Tipo)
Instituição / Organização
2023 - 2024 Identify gene expression profiles in freshwater mussels under thermal stress
Coorientador de Beatriz Ferreira da Silva
Universidade do Minho Centro de Engenharia Biológica, Portugal
2023 - 2024 Light in the deep: The transcriptome of the deep-sea marine hatchetfish Sternoptyx diaphana, Hermann, 1781
Coorientador
Universidade do Porto Centro Interdisciplinar de Investigação Marinha e Ambiental, Portugal
2022 - 2023 Behavioral reactions of freshwater mussels to drought and dewatering
Orientador de Henrique Manuel Rodrigues
Gestão e Exploração dos Recursos Biológicos Aquáticos (Mestrado)
Universidade do Porto Faculdade de Ciências, Portugal
2022 - 2023 Nuclear Receptors at Evolutionary crossroads: from phylogeny to physiology
Coorientador
Universidade do Porto Centro Interdisciplinar de Investigação Marinha e Ambiental, Portugal
2021 - 2022 Análises de filogenia utilizando Sequenciação de Nova Geração (NGS) de regiões genómicas direcionalmente enriquecidas
Orientador
Universidade do Porto Centro Interdisciplinar de Investigação Marinha e Ambiental, Portugal
2018 - 2022 Inferring phylogeny, demography and adaptive variation in Margaritiferidae from M. margaritifera High-throughput Sequencing data
Orientador de André Manuel Gomes dos Santos
Biologia (Doutoramento)
Universidade do Porto Faculdade de Ciências, Portugal
2018 - 2022 Genetic diversity within Thymallus: from species delimitation to whole genome sequencing
Orientador de Giulia Secci
Biologia (Doutoramento)
Universidade do Porto Faculdade de Ciências, Portugal
2020/01 - 2021/01 Mitogenomic Phylogeny of Freshwater mussels (Bivalvia: Unionida)
Orientador de João Eduardo Afonso Teiga Teixeira
Bioinformática e Aplicações às Ciências da Vida (Mestrado)
Universidade de Trás-os-Montes e Alto Douro, Portugal
2017 - 2021 Resistance and resilience of threatened Iberian freshwater mussels to climate change
Coorientador de Paulo José Soares Castro
Biologia Molecular e Ambiental (Doutoramento)
Universidade do Minho Centro de Biologia Molecular e Ambiental, Portugal
2016 - 2020 Population structure, movement patterns and habitat connectivity of the blue jack mackerel, Trachurus picturatus, in the NE Atlantic: otolith geochemistry and genetic markers as a combined tool for a rational management of fisheries resources
Coorientador de Cláudia Filipa Devesa André Moreira
Ciências do Meio Aquático (Doutoramento)
Universidade do Porto Instituto de Ciências Biomédicas Abel Salazar, Portugal
2016 - 2017 Diversity and Distribution of Freshwater Mussels in Morocco
Coorientador de André Manuel Gomes dos Santos
Ecologia (Mestrado)
Universidade do Minho Departamento de Biologia, Portugal
2016 - 2016 Diversidade genética do mexilhão de água doce Anodonta anatina na Turquia
Orientador de Bárbara Morgado
Universidade do Porto Centro Interdisciplinar de Investigação Marinha e Ambiental, Portugal
2011 - 2015 Taxonomy, Phylogeny, and Ecology of the suborder Tanaidomorpha (Tanaidacea, Peracarida) in the deep-sea of the Atlantic Ocean
Coorientador de Catarina Araújo-Silva
Ciências do Meio Aquático (Doutoramento)
Universidade do Porto Instituto de Ciências Biomédicas Abel Salazar, Portugal
2013 - 2013 Diversidade genética do mexilhão de água doce Unio delphinus na Península Ibérica
Orientador de Amanda Sousa
Universidade do Porto Centro Interdisciplinar de Investigação Marinha e Ambiental, Portugal
2012 - 2013 From sorting techniques to molecular identification of freshwater Unionidae species
Orientador de Tiago Luz
Universidade do Porto Centro Interdisciplinar de Investigação Marinha e Ambiental, Portugal
2011 - 2013 Phylogenetic analysis of Pisidium (Bivalvia: Sphaeriidae) based on molecular mtDNA and nuclear sequence data
Orientador de Ricardo Azevedo
Biologia (Mestrado)
MSc in Biodiversity, Genetics and Evolution (Mestrado), Universidade do Porto, Portugal, Portugal
2010 - 2011 Population structure and genetic diversity of three marine lobstres from the NE Atlantic and Mediterranean
Orientador de João Faria
Biologia (Mestrado)
Universidade do Porto Faculdade de Ciências, Portugal
2010 - 2011 Genetic diversity differentiation between kelp species with potential to be used in biofuel production using molecular tools
Coorientador
Universidade do Porto Centro Interdisciplinar de Investigação Marinha e Ambiental, Portugal
2007 - 2009 Genetic diversity within Scorpions: Scorpio and Buthus
Orientador de Pedro Sousa
Biologia (Mestrado)
Universidade do Porto Faculdade de Ciências, Portugal

Organização de evento

Nome do evento
Tipo de evento (Tipo de participação)
Instituição / Organização
2020 - 2020 XIX Encontro Nacional de Ecologia. Scientific Committee and co- moderator of the Marine and Ocean Resources theme area (2020 - 2020)
Congresso (Membro da Comissão Científica)
2018 - 2018 First FMCS International Freshwater Mollusk Meeting (2018 - 2018)
Congresso (Membro da Comissão Científica)
2017 - 2017 Sharing best practice in marine conservation and research (Organizing Committee and Scientific Committee) (2017 - 2017)
Conferência (Membro da Comissão Organizadora)
Universidade do Porto Centro Interdisciplinar de Investigação Marinha e Ambiental, Portugal
2015 - 2015 XV European Congress of Ichthyology (Organizing Committee and Scientific Committee) (2015 - 2015)
Congresso (Membro da Comissão Organizadora)
Universidade do Porto Centro Interdisciplinar de Investigação Marinha e Ambiental, Portugal
2015 - 2015 2nd International Meeting on Biology and Conservation of Freshwater Bivalves (Organizing Committee and Scientific Committee) (2015 - 2015)
Congresso (Membro da Comissão Organizadora)
2012 - 2012 International Meeting on Biology and Conservation of Freshwater Bivalves (2012 - 2012)
Congresso (Membro da Comissão Organizadora)
Instituto Politécnico de Bragança, Portugal
2012 - 2012 Portuguese Congress of Malacology (Organizing Committee and Scientific Committee) (2012 - 2012)
Congresso (Membro da Comissão Organizadora)
Instituto Politécnico de Bragança, Portugal

Júri de grau académico

Tema
Tipo de participação
Nome do candidato (Tipo de grau)
Instituição / Organização
2023 Assessing myxosporean (Cnidaria, Myxozoa) presence and diversity in the Minho River: traditional approaches versus eDNA metabarcoding
Arguente principal
Gabriel Santiago Nunes Rodrigues Ferreira (Mestrado)
Universidade do Porto Instituto de Ciências Biomédicas Abel Salazar, Portugal
2021 Monitoring Coastal Benthic Colonization of Artificial Substrates with the Support of DNA Metabarcoding Approaches
Arguente principal
Bárbara Daniela da Rocha Leite (Doutoramento)
Universidade do Minho, Portugal
2019 “The trophic ecology of two aquatic invaders, the red swamp and the signal crayfish, in North-eastern Portugal”
Arguente principal
Guilherme Buzzo Pereira (Mestrado)
Universidade do Porto Faculdade de Ciências, Portugal
2017 BIODIVERSITY AND EVOLUTION OF THE COASTAL PERACARIDEAN FAUNA OF MACARONESIA AND NORTHEAST ATLANTIC
Arguente principal
Pedro Emanuel Ferreira dos Reis Vieira (Doutoramento)
Universidade de Aveiro Departamento de Biologia, Portugal

Entrevista (jornal / revista)

Descrição da atividade Jornal / Forum
2022 Estudo das alterações climáticas nos mexilhões de água doce Publico

Entrevista / Programa (rádio / tv)

Programa Tema
2022 - Atual “Sem Espinhas” Mexilhões de Água Doce e as Alterações Climáticas
2021 - Atual Mentes que Brilham Ecossistemas Aquáticos de Água Doce
2021 - Atual Primeiro Jornal Estudar o mexilhão de agua doce para medir o impacto das alterações climáticas em Portugal
Distinções

Prémio

2021 IACOBUS - papers award for the work "Spatio-temporal microsatellite data suggest a multidirectional connectivity pattern in the Trachurus picturatus metapopulation from the Northeast Atlantic".
2013 "Paeloris: characterization and protection of native species of bivalves in the coastal lagoons of Barrinha de Mira, Mira, Vela and Braças" (as team member)