???global.info.a_carregar???
Rui Jorge Miranda Rocha. Concluiu o(a) Doutoramento em Programa Doutoral em Biologia em 2013/09/10 pelo(a) Universidade de Aveiro e Licenciatura em Biologia Marinha e Pescas em 2002/02/21 pelo(a) Universidade do Algarve - Campus de Gambelas. Publicou 36 artigos em revistas especializadas. Atua na(s) área(s) de Ciências Naturais com ênfase em Ciências da Terra e do Ambiente com ênfase em Recursos Aquáticos e Ciências Agrárias com ênfase em Agricultura, Silvicultura e Pescas com ênfase em Pescas. Nas suas atividades profissionais interagiu com 142 colaborador(es) em coautorias de trabalhos científicos.
Identification

Personal identification

Full name
Rui Jorge Miranda Rocha

Citation names

  • Rocha, Rui
  • Rui J. M. Rocha
  • Rui J. Rocha

Author identifiers

Ciência ID
031C-ABB6-C318
ORCID iD
0000-0002-4385-6074

Email addresses

  • ruimirandarocha@gmail.com (Professional)

Telephones

Mobile phone
  • (+351) 939412836 (Personal)

Websites

Knowledge fields

  • Natural sciences - Earth and Environmental Sciences - Water Resources
  • Natural sciences - Biological Sciences - Marine Biology

Languages

Language Speaking Reading Writing Listening Peer-review
Portuguese (Mother tongue)
English Advanced (C1) Advanced (C1) Advanced (C1) Advanced (C1) Advanced (C1)
Education
Degree Classification
2009/05/01 - 2013/09/10
Concluded
 Programa Doutoral em Biologia (Doutoramento)
Major in Biologia e Biociências Aplicadas
Universidade de Aveiro, Portugal
"Effect of light on ex situ production of symbiotic corals " (THESIS/DISSERTATION)
 Aprovado
1997/09 - 2002/02/21
Concluded
 Biologia Marinha e Pescas (Licenciatura)
Major in Pescas, opção Aquacultura
Universidade do Algarve - Campus de Gambelas, Portugal
"Nitrogen Removal in Aquaculture Recirculating Systems" (THESIS/DISSERTATION)
 15
Affiliation

Teaching in Higher Education

Category
Host institution 		Employer
2024/02/15 - Current Assistant Professor (University Teacher) Universidade de Aveiro, Portugal
Universidade de Aveiro, Portugal

Others

Category
Host institution 		Employer
2020/08/01 - Current Diretor de Operações; Diretor de Inovação e Desenvolvimento Riasearch, Lda., Portugal
Projects

Grant

Designation Funders
2015/07 - 2019/01/30 Effect of microplastics on the ontogeny, physiology and metabolism of marine fish larvae, under a 100 year climate change scenario
SFRH/BPD/99819/2014
 FCT - Fundação para a Ciência e a Tecnologia
Concluded

Contract

Designation Funders
2019/04 - Current Feasibility assessment of community-based bivalve farming, Cabo Delgado, Mozambique
OSOL
Principal investigator
Universidade de Aveiro Centro de Estudos do Ambiente e do Mar, Portugal
 European Union
Ongoing
2018/10 - Current NutriMo - Development of handmade diets for tilapia nutrition in community based aquaculture in Mozambique
Nutrimo
Researcher
Universidade de Aveiro Centro de Estudos do Ambiente e do Mar, Portugal
 FCT - Fundação para a Ciência e a Tecnologia

Aga Khan Development Network
Ongoing
2018/07/26 - Current INSIDER - Impact of an invasive species under global climate change and anthropogenic contamination scenarios in coastal food webs
POCI-01-0145-FEDER-030495
Researcher
Universidade de Aveiro Centro de Estudos do Ambiente e do Mar, Portugal
Ongoing
2018/07 - Current CRAGIAMP - Search for Antimicrobial Peptides in Crassostrea gigas oysters and Paracentrotus lividus sea urchin
PTDC/BIA-BQM/30232/2017
Researcher
Universidade do Porto Centro Interdisciplinar de Investigação Marinha e Ambiental, Portugal
Ongoing
2018/01/01 - Current MAXIAQUA - MAXimization of the strategies of control of a parasite in aquaculture of turbot
MAR-02.02.01-FEAMP-0019
Researcher
Universidade de Aveiro, Portugal
 European Maritime and Fisheries Fund
Ongoing
2017/10 - Current VALORMAR - Valorização Integral dos Recursos Marinhos: Potencial, Inovação Tecnológica e Novas Aplicações
POCI-01-0247-FEDER-024517
Researcher
Agência Nacional de Inovação SA
Ongoing
2017/10 - Current MolBiPack – Melhoramento dos processos de acondicionamento, transporte e embalamento de moluscos bivalves: da captura à comercialização
MAR-01.03.01-FEAMP-0005
Principal investigator
Universidade de Aveiro Centro de Estudos do Ambiente e do Mar, Portugal
 European Maritime and Fisheries Fund
Ongoing
2017/10 - Current BioDepura – Desenvolvimento de metodologias de depuração de moluscos bivalves adequadas aos requisitos fisiológicos de cada espécie
MAR-02.01.01-FEAMP-0018
Principal investigator
Universidade de Aveiro Centro de Estudos do Ambiente e do Mar, Portugal
 European Maritime and Fisheries Fund
Ongoing
2002/09/01 - Current The underlying mechanisms of the effect of microalgae on the early life stages of fishes
info:eu-repo/grantAgreement/FCT/POCI/37978/PT
 Universidade do Algarve Faculdade de Ciências e Tecnologia
Concluded
2015/10 - 2018/12 ALISSA - Healthy and sustainable food for aquaculture fish
230-POCI-01-0247-FEDER-3520
Researcher
Universidade de Aveiro Centro de Estudos do Ambiente e do Mar, Portugal
 European Regional Development Fund
Concluded
2017/05 - 2018/04 Feasibility assessment of community-based oyster farming in Quiwia, Cabo Delgado. Part of Our Sea Our Life Project
Our Sea Our Life
Researcher
The Zoological Society of London, United Kingdom
 European Union
Concluded
2015/03/01 - 2015/12/03 DepurPlus – Otimização dos processo de depuração de moluscos bivalves
PROMAR (31.03.05.FEP.0065)
Principal investigator
Universidade de Aveiro, Portugal
 European Maritime and Fisheries Fund
Concluded
2012/01 - 2015/12 SymbioCoRe - SYnergies through Merging BIOlogical and biogeochemical expertise in COral Research
Grant agreement ID: 295191
Research Fellow
Universidade de Aveiro, Portugal
Concluded
2014/04/01 - 2014/06/30 Sustainable Use of Marine Resources” – MARES
CENTRO-07-ST24-FEDER-002033
Post-doc Fellow
Universidade de Aveiro Centro de Estudos do Ambiente e do Mar, Portugal
Concluded
Outputs

Publications

Conference abstract
  1. Hugo Vieira; Bordalo M. D.; Andreia C. M. Rodrigues; Sílvia F. S. Pires; Rui J. M. Rocha; Rendón-vonOsten J.; Amadeu M.V.M. Soares; Morgado F.; Abreu S. N.. "Effect of temperature on a short-term exposure of Common Goby (Pomatochistusmicrops) to an environmentally relevant mercury concentration.". Paper presented in SETAC Europe 30th Annual Meeting, Dublin, 2020.
    Accepted
  2. Sónia D Coelho; Jacinta MM Oliveira; Hugo C Vieira; Andreia C. M. Rodrigues; Rui J. M. Rocha; João LT Pestana; Carlos Gravato; Maria D Bordalo. "Behavioural and biochemical responses of the mussel Mytilus galloprovincialis exposed to the red macroalga Asparagopsis armata exudate". Paper presented in SETAC Europe 30th Annual Meeting, Dublin, 2020.
    Accepted
  3. Rui J. M. Rocha; Andreia C. M. Rodrigues; Diana Campos; Lais H Cícero; Ana PL Costa; Davide Silva; Miguel Oliveira; Amadeu M.V.M. Soares; Ana Patrício-Silva. "Do microplastics affect the cosmopolitan zoanthid Zoanthus sociatus, in a short-term exposure scenario? Responses at physiological and biochemical levels.". Paper presented in SETAC Europe 30th Annual Meeting, Dublin, 2020.
    Accepted
  4. Rui J. M. Rocha; Sílvia F. S. Pires; Costa APL; Vitória Pereira; Cabral M.; Matias D.; Pacheco M.; Amadeu M.V.M. Soares; Andreia C. M. Rodrigues. "Temperature effect on oxidative stress and depuration efficiency of different bivalve species produced in aquaculture.". Paper presented in Aquaculture America, Honolulu, 2020.
    Accepted
  5. Rui J. M. Rocha; Andreia C. M. Rodrigues; Vitória Pereira; Sílvia F. S. Pires; Pacheco M.; Costa APL; Marques C.; Amadeu M.V.M. Soares. "Bivalve harvesting, transport and packaging: how to improve the quality of product in consumers table.". Paper presented in Aquaculture America, Honolulu, 2020.
    Accepted
  6. Ana P. L. Costa; Igor Bernardo; Davide A. M. Silva; Pedro Bem-Haja; Andreia C. M. Rodrigues; Jorge Dias; Catarina Marques; et al. "Tropical corals nutrition: are microencapsulated diets suitable to improve growth performance?". Paper presented in Aquaculture America, Honolulu, 2020.
    Published
  7. Davide A. M. Silva; Jamen J. A. Mussa; Ana P.L. Costa; Andreia C. M. Rodrigues; Amadeu M.V.M. Soares; Rui J. M. Rocha. "Sinularia flexibilis AQUACULTURE: DOES LIGHT MATTER?". Paper presented in Aquaculture Europe, Berlim, 2019.
    Published
  8. A. P. L. Costa; A. C. M. Rodrigues; Bettencourt F; Matias D.; Amadeu M.V.M. Soares; Rui J. M. Rocha. "MICROBIOLOGICAL LOAD OF BIVALVE MOLLUSCS, CULTURED IN CLASS C AREAS, AFTER A DEPURATION PROCESS TESTING WATER TEMPERATURES.". Paper presented in Aquaculture Europe 2019, Berlim, 2019.
    Accepted
  9. Andreia C. M. Rodrigues; Sílvia F. S. Pires; Ana P.L. Costa; Vitória Pereira; Filipa Bettencort; Domitília Matias; Amadeu M.V.M. Soares; Rui J. M. Rocha. "OPTIMUM WATER TEMPERATURE BOOSTS DEPURATION EFFICIENCY CHANGING OXIDATIVE STRESS STATUS OF DIFFERENT BIVALVE SPECIES.". Paper presented in Aquaculture Europe 2019, Berlim, 2019.
    Accepted
  10. A. P. L. Costa; A. C. M. Rodrigues; D. A. M. Silva; C. R. Marques; A. M. V. M. Soares; Rui J. M. Rocha. "DO TROPICAL CORALS GET STRESSED DUE TO SHIPPING?". Paper presented in Aquaculture Europe 2019, Berlim, 2019.
    Accepted
  11. Jamen Mussa; Davide A.M. Silva; Ana P.L. Costa; Amadeu M.V.M. Soares; Andreia C.M. Rodrigues; Rui J. M. Rocha. "CORAL AQUACULTURE: THE INFLUENCE OF COLONY ORIGIN IN THE PERFORMANCE OF CULTURED FRAGMENTS IN DIFFERENT ARTIFICIAL LIGHT CONDITIONS.". Paper presented in Aquaculture Europe 2019, Berlim, 2019.
    Accepted
  12. Lais H Cícero; AL Patrício Silva; APL Costa; ACM Rodrigues; D. Silva; AMVM Soares; Rui J. M. Rocha. "EFFECTS OF MICROPLASTICS TO THE CORAL Zoanthus sociatus MIGHT BE DRIVEN BY POLYMER TYPE IN SHORT-TERM EXPOSURE SCENARIOS.". Paper presented in Aquaculture Europe 2019, Berlim, 2019.
    Accepted
  13. Costa, A.P.L.; Matos, D.A; Rodrigues, A.C.M.; Pereira, V.; Sílvia F. S. Pires; Bettencourt, F.; Matias, D.; et al. "Biochemical status of Solen marginatus harvested in class C areas, after a depuration process testing water temperature and organism positioning in tanks.". Paper presented in 3rd International Conference on Food Contaminants - Challenges in Risk Assessment, Aveiro, 2019.
    Accepted
  14. Pereira, V.; Ofoegbu P.U.; Sílvia F. S. Pires; Rodrigues A.C.M.,; Bem-Haja P.; Almeida H.; Cabral M.,; et al. "Temperature effects on the depuration and shelf-life of Ruditapes decussatus from class C areas, to ensure food quality and safety.". Paper presented in 3rd International Conference on Food Contaminants - Challenges in Risk Assessment, Aveiro, 2019.
    Accepted
  15. Sílvia F. S. Pires; Martins, D.; Rodrigues A.C.M.; Ofoegbu P.; Pereira, V.; Pacheco M.; Costa A. P. L; Soares A.M.V.M.; Rui J. M. Rocha. "Quality of cockles can be affected by harvesting and transport techniques.". Paper presented in 3rd International Conference on Food Contaminants - Challenges in Risk Assessment, Aveiro, 2019.
    Accepted
  16. Rodrigues, A.C.M.; Sílvia F. S. Pires; Costa A. P.L.; Pereira, V.; Ofoegbu P.U.; Bettencourt, F.; Matias D.,; et al. "Water temperature affects differently the depuration and oxidative stress status of two bivalve species.". Paper presented in 3rd International Conference on Food Contaminants - Challenges in Risk Assessment, Aveiro, 2019.
    Published
  17. Rui J. M. Rocha; Andreia C. M. Rodrigues; Pedro Bem-Haja; Vitória Pereira; Ana P.L. Costa; Catarina R. Marques; Mario Pacheco; Amadeu M.V.M. Soares. "Ruditapes decussatus oxidative damage during commercialization period after a depuration process under different temperatures.". Paper presented in Aquaculture 2019, New Orleans, 2019.
    Published • 10.13031/aim.20162378067
  18. Andreia C. M. Rodrigues; Sílvia F. S. Pires; Ana P.L. Costa; Luis E C Conceição; Manuela Castro-Cunha; Jorge Dias; José Calheiros; et al. "Methionine and threonine supplementation change rainbow trout capability to respond to water temperature increase". Paper presented in Aquaculture 2019, New Orleans, 2019.
    Published
  19. Ana PL Costa; Andreia C. M. Rodrigues; Luis E. C. Conceição; Carlos Gravato; José Calheiros; Manuela Castro-Cunha; Amadeu M.V.M. Soares; Rui J. M. Rocha. "Effect of temperature fluctuation during an annual cycle on oxidative stress and energy allocation biomarkers of diploid and triploid Oncorhynchus mykiss.". Paper presented in 3rd AquaImprove – Aquaculture Research Workshop, Matosinhos, 2018.
    Published
  20. Joana Moura; Rita Azeredo; Andreia C.M. Rodrigues; Ana P.L. Costa; Luís E.C. Conceição; Jorge Dias; Manuela Castro-Cunha; Rui J. M. Rocha; Benjamín Costas. "EFFECTS OF DIETARY METHIONINE AND THREONINE SUPPLEMENTATION ON THE IMMUNE STATUS OF RAINBOW TROUT (Oncorhynchus mykiss) UNDER THERMIC STRESS.". Paper presented in 31st congress of the ESCPB, Porto, 2018.
    Published
  21. Rita Azeredo; Andreia C. M. Rodrigues; Ana P.L. Costa; Marina Machado; Luis E. C. Conceição; Jorge Dias; Manuela Castro-Cunha; Rui J. M. Rocha; Benjamín Costas. "ASSESSMENT OF METHIONINE AND THREONINE DIETARY SUPPLEMENTATION IN RAINBOW TROUT (Oncorhynchus mykiss) EXPOSED TO ACUTE THERMIC STRESS.". Paper presented in 31st congress of the ESCPB, Porto, 2018.
    Published
  22. Júlia Gomes; Ana P.L. Costa; Luis E C Conceição; Carlos Gravato; José Calheiros; Manuela Castro-Cunha; Amadeu M. V. M. Soares; et al. "EVALUATION OF CELLULAR ENERGY ALLOCATION IN Oncorhynchus mykiss EXPOSED TO THERMAL STRESS". Paper presented in VII Iberian Congress of Ichthyology, SIBIC 2018, Faro, 2018.
    Published
  23. Sílvia F. S. Pires; Andreia C. M. Rodrigues; Jorge Dias; Luis E C Conceição; Carlos Gravato; José Calheiros; Manuela Castro-Cunha; Amadeu M.V.M. Soares; Rui J. M. Rocha. "EFFECTS OF ESSENTIAL AMINO ACIDS IN THE ENERGY BUDGET OF RAINBOW TROUT Oncorhynchus mykiss CULTURED UNDER WARMING WATERS.". Paper presented in VII Iberian Congress of Ichthyology, SIBIC 2018, Faro, 2018.
    Published
  24. Miguel Guerreiro; Andreia C. M. Rodrigues; Luis E C Conceição; Carlos Gravato; José Calheiros; Manuela Castro-Cunha; Jorge Dias; Amadeu M. V. M. Soares; Rui J. M. Rocha. "TEMPERATURE EFFECTS ON OXIDATIVE STRESS STATUS OF RAINBOW TROUT". Paper presented in SIBIC 2018, Faro, 2018.
    Published
  25. Galante-Oliveira S.; Laranjeiro F.; Oliveira I.B.; Fonseca J.G.; Freitas D.B.; Domingues I.; Rui J. M. Rocha; Barroso C.. "Evidence of altered behaviour and reduced survival in Nassarius reticulatus (L.) veligers exposed to marine climate change projected scenarios". Paper presented in 4th International Symposium on the Effects of Climate Change on the World’s Oceans (ECCWO), Washington DC, 2018.
    Published
  26. Araújo M.J.; Quintaneiro C.; Rui J. M. Rocha; Soares A.M.V.M.; Monteiro M.S.. "Early life stages of a vertebrate species as an alternative model for the study of stressors in marine environment". Paper presented in SETAC Europe 28th annual meeting, Roma, 2018.
    Published
  27. Fonseca J.G.; Freitas D.B.; Laranjeiro, F.; Oliveira I.B.; Rui J. M. Rocha; Domingues I.; Galante-Oliveira S.; Barroso C.M.. "Impacto da acidificação e aquecimento oceânico no comportamento larvar do gastrópode Nassarius reticulatus.". Paper presented in Congresso Nacional sobre Alterações Climáticas, Vila Real, 2018.
    Published
  28. Freitas D.B.; Fonseca J.G.; Laranjeiro, F.; Oliveira I.B.; Rui J. M. Rocha; Galante-Oliveira S.; Barroso C.M.. "Efeito do aquecimento oceânico na ontogenia e crescimento de fases iniciais de vida do gastrópode Nassarius reticulatus.". Paper presented in Congresso Nacional sobre Alterações Climáticas, Vila Real, 2018.
    Published
  29. Rodrigues A.C.M.; Gravato C.; Cunha M.C.; Calheiros J.; Soares A.M.V.M.; Rui J. M. Rocha. "Increased water temperature alter oxidative defences and energy allocation of diploid and triploid Oncorhynchus mykiss.". Paper presented in Aquaculture Europe 2017, Dubrovnik, 2017.
    Published
  30. Rodrigues A.C.M; Machado A.L.; Bordalo M.D.; Saro L.; Simão F.C.P.; Almeida S.F.P.; Rui J. M. Rocha; et al. "Combined effects of invasive species and insecticide exposure to freshwater benthic invertebrate community: a mesocosm approach.". Paper presented in SETAC Europe, 27th Annual Meeting, Brussels, 2017.
    Published
  31. Araújo M.J.; Monteiro M.S.; Rui J. M. Rocha; Soares A.M.V.M.. "Effects of the endocrine disrupter triclosan to early life stages of the marine fish Solea senegalensis Kaup, 1858.". Paper presented in SETAC Europe, 27th Annual Meeting., Brussels, 2017.
    Published
  32. Mota J.; Pestana, J.L.T.; Calado, R.; Soares A.M.V.M.; Rui J. M. Rocha. "Effects of the organic-UV filter, Benzophenone-3, on the photobiology of the hexacoral Zoanthus sp.". Paper presented in SETAC Europe, 27th Annual Meeting., Brussels, 2017.
    Published
  33. Araújo M.J.; Monteiro M.S.; Rui J. M. Rocha; Soares A.M.V.M.. "Effects of the endocrine disrupter triclosan to early life stages of the marine fish.". Paper presented in ETAC Europe, 26th Annual Meeting., Nantes, 2016.
    Published
  34. Araújo M.J.; Monteiro M.S.; Rui J. M. Rocha; Amadeu M.V.M. Soares. "The use of Solea senegalensis Kaup, 1858 as an alternative model to vertebrate animal testing: effects of a UV-filter to marine fish embryos.". Paper presented in 10th Iberian and 7th Iberoamerican Conference on Environmental Contamination and Toxicology., Vila Real, 2015.
    Published
  35. Cartaxana P.; Vieira S.; Ribeiro L.; Rui J. M. Rocha; Cruz S.; Calado R.; Marques da Silva J.. "Effects of elevated temperature and CO2 on intertidal microphytobenthos.". Paper presented in ECSA54 Coastal System Under Change - Tuning Assessment and Management Tools., Sesimbra, 2014.
    Published
  36. Rui J. M. Rocha; Cartaxana P.; Gomes N.C.M.; Calado R.; Serôdio J.. "Sarcophyton glaucum and Sinularia flexibilis photosynthesis under different light regimes". Paper presented in 12th International Coral Reef Symposium, Cairns, 2012.
    Published
  37. Makridis P.; Martins, S.; Costa R.; Ribeiro L.; Rui J. M. Rocha; Papandroulakis N.; Dinis M.T. Divanach P.. "Microbial effect of microalgae in the rearing of marine fish larvae - a review. Larvi 2005". Paper presented in 4th fish & shellfish larviculture symposium, Ghent, 2005.
    Published
  38. Rui J. M. Rocha; Ribeiro, L.; Costa R.; Dinis M.T.. "Does the presence of microalgae influences fish larvae prey capture? Larvi 2005". Paper presented in 4th fish & shellfish larviculture symposium, Ghent, 2005.
    Published
  39. Makridis, P.; Martins, S.; Costa, R.; Ribeiro, L.; Rui J. M. Rocha; Papandroulakis, N.; Dinis, M.T.. "Microbial effect of microalgae in the rearing of marine fish larvae - a review". Paper presented in Larvi 2005, 4th fish & shellfish larviculture symposium, Ghent, 2005.
    Published
  40. Rui J. M. Rocha; Ribeiro, L.; Costa, R.; Dinis, M.T.. "Does the presence of microalgae influences fish larvae prey capture?". Paper presented in Larvi 2005 - 4th fish & shellfish larviculture symposium, Ghent, 2005.
  41. Lacuisse M.A.; Rui J. M. Rocha; Conceição, L.E.C.; Makridis P.; Dinis M.T.; Lacuisse, M.A.; Makridis, P.; Dinis, M.T.. "Influence of different microalgae species on size and growth of Brachionus plicatilis.". Paper presented in World Aquaculture, Bali, 2005.
    Published
  42. Ribeiro L.; Rui J. M. Rocha; Couto A.S.; Dinis, M.T.; Ribeiro, L.; Couto, A.S.. "Efeito do regime alimentar na capacidade digestiva de pós larvas de dourada (Sparus aurata).". Paper presented in Seminário de Aquacultura e Novas Espécies, Funchal, 2004.
    Submitted
  43. Rui J. M. Rocha; Couto A.S.; Ribeiro L.; Dinis M.T.. "O efeito da “água verde” na qualidade nutricional dos rotíferos.". Paper presented in Seminário de Aquacultura e Novas Espécies, Funchal, 2004.
    Published
  44. Couto, A.S.; Ribeiro, L.; Rui J. M. Rocha; Dinis, M.T.. "The effect of microalgae addition on the activity of digestive enzymes of sea bream (Sparus aurata) larvae". Paper presented in Aquaculture Europe 2004, Barcelona, 2004.
    Published
Journal article
  1. André Barreto; Ana Couto; Daniel Jerónimo; Adriana Laranjeira; Bruna Silva; Catarina Nunes; Ana Veríssimo; et al. "Salicornia ramosissima Biomass as a Partial Replacement of Wheat Meal in Diets for Juvenile European Seabass (Dicentrarchus labrax)". Animals (2024): https://www.mdpi.com/2076-2615/14/4/614.
    10.3390/ani14040614
  2. Raquel Marçal; Pedro sousa; Ana Marques; Vitória Pereira; Sofia Guilherme; André Barreto; Benjamín Costas; Rui J. M. Rocha; M. Pacheco. "Exploring the Antioxidant and Genoprotective Potential of Salicornia ramosissima Incorporation in the Diet of the European Seabass (Dicentrarchus labrax)". Animals (2023): https://www.mdpi.com/2076-2615/14/1/93.
    10.3390/ani14010093
  3. Vitória Pereira; Sílvia F. S. Pires; Andreia C. M. Rodrigues; Pearl Ofoegbu; Pedro Bem-Haja; Amadeu M. V. M. Soares; Luís E. C. Conceição; Rui J. M. Rocha; Mário Pacheco. "Microencapsulated Diets as an Alternative to Bivalve Feeding: Particle Size and Microalga Content Affect Feed Intake". Animals (2023): https://doi.org/10.3390/ani13122009.
    10.3390/ani13122009
  4. Barreto, Andre; Peixoto, Diogo; Fajardo, Carlos; Pinto, Wilson; Rocha, Rui J. M.; Conceicao, Luis E. C.; Costas, Benjamin. "Health-Promoting Additives Supplemented in Inert Microdiets for Whiteleg Shrimp (Penaeus vannamei) Post-Larvae: Effects on Growth, Survival, and Health Status". Animals (2023): https://publons.com/wos-op/publon/56742253/.
    10.3390/ANI13040726
  5. Laura Sini Sofia Hulkko; Rui Miranda Rocha; Riccardo Trentin; Malthe Fredsgaard; Tanmay Chaturvedi; Luísa Custódio; Mette Hedegaard Thomsen. "Bioactive Extracts from Salicornia ramosissima J. Woods Biorefinery as a Source of Ingredients for High-Value Industries". Plants (2023): https://publons.com/wos-op/publon/56052146/.
    10.3390/PLANTS12061251
  6. Cayenne, Aadila; Turcios, Ariel E.; Thomsen, Mette Hedegaard; Rocha, Rui Miranda; Papenbrock, Jutta; Uellendahl, Hinrich. "Halophytes as Feedstock for Biogas Production: Composition Analysis and Biomethane Potential of Salicornia spp. Plant Material from Hydroponic and Seawater Irrigation Systems". Fermentation (2022): https://publons.com/wos-op/publon/51513488/.
    10.3390/FERMENTATION8040189
  7. Santana, Ligia M. B. M.; Rodrigues, Andreia C. M.; Campos, Diana; Kaczerewska, Olga; Figueiredo, Joana; Silva, Sara; Sousa, Isabel; et al. "Can the toxicity of polyethylene microplastics and engineered nanoclays on flatfish (Solea senegalensis) be influenced by the presence of each other?". Science of the Total Environment (2022): https://publons.com/wos-op/publon/49388714/.
    10.1016/J.SCITOTENV.2021.150188
  8. Machado e Silva, Davide A.; Costa, Ana P.L.; Rodrigues, Andreia C.M.; Bem-Haja, Pedro; Pires, Sílvia S.F.; Soares, Amadeu M.V.M.; Marques, Catarina R.; et al. "Organic solvents alter photophysiological and oxidative stress profiles of the coral Zoanthus sp. - Towards an optimization of ecotoxicological protocols". Science of The Total Environment 777 (2021): 146072. http://dx.doi.org/10.1016/j.scitotenv.2021.146072.
    Published • 10.1016/j.scitotenv.2021.146072
  9. Hugo C. Vieira; Andreia C. M. Rodrigues; Sílvia F. S. Pires; Jacinta M. M. Oliveira; Rui J. M. Rocha; Amadeu M. V. M. Soares; Maria D. Bordalo. "Ocean Warming May Enhance Biochemical Alterations Induced by an Invasive Seaweed Exudate in the Mussel Mytilus galloprovincialis". Toxics (2021): https://doi.org/10.3390/toxics9060121.
    10.3390/toxics9060121
  10. Maria J. Xavier; Luís E. C. Conceição; Luisa M. P. Valente; Rita Colen; Andreia C. M. Rodrigues; Rui J. M. Rocha; Luísa Custódio; et al. "Dietary Natural Plant Extracts Can Promote Growth and Modulate Oxidative Status of Senegalese Sole Postlarvae under Standard/Challenge Conditions". Animals 11 5 (2021): 1398-1398. https://doi.org/10.3390/ani11051398.
    10.3390/ani11051398
  11. João Silvestre; Sílvia Pires; Vitória Pereira; Miguel Colaço; Ana Costa; Amadeu Soares; Domitília Matias; et al. "Meeting the Salinity Requirements of the Bivalve Mollusc Crassostrea gigas in the Depuration Process and Posterior Shelf-Life Period to Improve Food Safety and Product Quality". Water 13 8 (2021): 1126-1126. https://doi.org/10.3390/w13081126.
    10.3390/w13081126
  12. Barreto, André; Pinto, Wilson; Rodrigues, Andreia; Rocha, Rui J. M.; Unamunzaga, Carlos; Silva, Tomé; Dias, Jorge; Conceição, Luis E. C.. "Phaeodactylum tricornutum biomass in microdiets enhances Senegalese sole (Solea senegalensis) larval growth performance during weaning". Journal of Applied Phycology 33 4 (2021): 2233-2240. http://dx.doi.org/10.1007/s10811-021-02444-w.
    Published • 10.1007/s10811-021-02444-w
  13. Costa, Ana P.L.; Silva, Davide A.M.; Rodrigues, Andreia C.M.; Marques, Catarina R.; Soares, Amadeu M.V.M.; Rocha, Rui J.M.. "Species-specific oxidative stress responses and cellular energy allocation after coral shipping". Aquaculture Reports 19 (2021): 100623. http://dx.doi.org/10.1016/j.aqrep.2021.100623.
    10.1016/j.aqrep.2021.100623
  14. Maria D. Pavlaki; Rui G. Morgado; Violeta Ferreira; Rui J. M. Rocha; Amadeu M. V. M. Soares; Ricardo Calado; Susana Loureiro. "Cadmium Accumulation and Kinetics in Solea senegalensis Tissues under Dietary and Water Exposure and the Link to Human Health". Water 13 4 (2021): 522-522. https://doi.org/10.3390/w13040522.
    10.3390/w13040522
  15. Sónia D. Coelho; Hugo C. Vieira; Jacinta M. M. Oliveira; Sílvia F. S. Pires; Rui J. M. Rocha; Andreia C. M. Rodrigues; Amadeu M. V. M. Soares; Maria D. Bordalo. "How Does Mytilus galloprovincialis Respond When Exposed to the Gametophyte Phase of the Invasive Red Macroalga Asparagopsis armata Exudate?". Water 13 4 (2021): 460-460. https://doi.org/10.3390/w13040460.
    10.3390/w13040460
  16. Vieira, H.C.; Bordalo, M.D.; Rodrigues, A.C.M.; Pires, S.F.S.; Rocha, R.J.M.; Soares, A.M.V.M.; Rendón-von Osten, J.; Abreu, S.N.; Morgado, F.. "Water temperature modulates mercury accumulation and oxidative stress status of common goby (Pomatoschistus microps)". Environmental Research 193 (2021): 110585. http://dx.doi.org/10.1016/j.envres.2020.110585.
    10.1016/j.envres.2020.110585
  17. Diana Campos; Andreia C. M. Rodrigues; Rui J. M. Rocha; Roberto Martins; Ana Candeias-Mendes; Sara Castanho; Florbela Soares; et al. "Are Microplastics Impairing Marine Fish Larviculture?—Preliminary Results with Argyrosomus regius". Water (2021): https://doi.org/10.3390/w13010104.
    10.3390/w13010104
  18. Andrade, Madalena; Rivera-Ingraham, Georgina; Soares, Amadeu M. V. M.; Rocha, Rui Jorge Miranda; Pereira, Eduarda; Sole, Montserrat; Freitas, Rosa. "How do life-history traits influence the fate of intertidal and subtidal Mytilus galloprovincialis in a changing climate?". Environmental Research (2021): https://publons.com/wos-op/publon/32386615/.
    10.1016/J.ENVRES.2020.110381
  19. Correia, Simão; Picado, Ana; de Montaudouin, Xavier; Freitas, Rosa; Rocha, Rui J. M.; Dias, João M.; Magalhães, Luísa. "Parasite Assemblages in a Bivalve Host Associated with Changes in Hydrodynamics". Estuaries and Coasts 44 4 (2020): 1036-1049. http://dx.doi.org/10.1007/s12237-020-00848-4.
    10.1007/s12237-020-00848-4
  20. Andreia C. M. Rodrigues; Carlos Alexandre Gravato; Carlos J.M. Silva; Sílvia Pires; Ana P. L. Costa; Luís E. C. Conceição; Paulo Santos; et al. "Seasonal Temperature Fluctuations Differently Affect the Immune and Biochemical Parameters of Diploid and Triploid Oncorhynchus mykiss Cage-Cultured in Temperate Latitudes". Sustainability (2020): https://www.mdpi.com/2071-1050/12/21/8785.
    10.3390/su12218785
  21. Rocha, R.J.M.; Rodrigues, A.C.M.; Campos, D.; Cícero, L.H.; Costa, A.P.L.; Silva, D.A.M.; Oliveira, M.; Soares, A.M.V.M.; Patrício Silva, A.L.. "Do microplastics affect the zoanthid Zoanthus sociatus?". Science of The Total Environment 713 (2020): 136659. http://dx.doi.org/10.1016/j.scitotenv.2020.136659.
    10.1016/j.scitotenv.2020.136659
  22. Oliveira, Isabel B.; Freitas, Daniela B.; Fonseca, Joana G.; Laranjeiro, Filipe; Rocha, Rui J. M.; Hinzmann, Mariana; Machado, Jorge; Barroso, Carlos M.; Galante-Oliveira, Susana. "Vulnerability of Tritia reticulata (L.) early life stages to ocean acidification and warming". Scientific Reports 10 1 (2020): http://dx.doi.org/10.1038/s41598-020-62169-7.
    10.1038/s41598-020-62169-7
  23. Madeira, Diana; Andrade, Joana; Leal, Miguel C.; Ferreira, Violeta; Rocha, Rui J. M.; Rosa, Rui; Calado, Ricardo. "Synergistic Effects of Ocean Warming and Cyanide Poisoning in an Ornamental Tropical Reef Fish". Frontiers in Marine Science (2020): https://publons.com/wos-op/publon/32406126/.
    10.3389/FMARS.2020.00246
  24. De Marchi, Lucia; Rocha, Rui Jorge Miranda; Rodrigues, Andreia C. M.; Soares, Amadeu M. V. M.; Pretti, Carlo; Chiellini, Federica; Freitas, Rosa. "Environmental Fate of Multistressors on Carpet Shell ClamRuditapes decussatus: Carbon Nanoparticles and Temperature Variation". Sustainability (2020): https://publons.com/wos-op/publon/32863369/.
    10.3390/SU12124939
  25. Machado, Andreia; Pinto, Joaquim Sousa; Rocha, Rui. "BioDepura: bivalve depuration methodologies adapted to the physiological needs". Proceedings of the Euro-american Conference on Telematics and Information Systems (eatis) (2020): https://publons.com/wos-op/publon/56742158/.
    10.1145/3401895.3401918
  26. Fonseca, J. G.; Laranjeiro, F.; Freitas, D. B.; Oliveira, I. B.; Rocha, R. J. M.; Machado, J.; Hinzmann, M.; Barroso, C. M.; Galante-Oliveira, S.. "Impairment of swimming performance in Tritia reticulata (L.) veligers under projected ocean acidi fication and warming scenarios". Science of the Total Environment (2020): https://publons.com/wos-op/publon/33234998/.
    10.1016/J.SCITOTENV.2020.139187
  27. Rocha, R. J. M.; Rodrigues, A. C. M.; Campos, D.; Cicero, L. H.; Costa, A. P. L.; Silva, D. A. M.; Oliveira, M.; Soares, A. M. V. M.; Patricio Silva, A. L.. "Do microplastics affect the zoanthid Zoanthus sociatus?". Science of the Total Environment (2020): https://publons.com/wos-op/publon/27880360/.
    10.1016/J.SCITOTENV.2020.136659
  28. Madalena Andrade; Lucia De Marchi; Carlo Pretti; Federica Chiellini; Andrea Morelli; Etelvina Figueira; Rui J.M. Rocha; Amadeu M.V.M. Soares; Rosa Freitas. "The impacts of warming on the toxicity of carbon nanotubes in mussels". Marine Environmental Research (2019): https://doi.org/10.1016/j.marenvres.2019.01.013.
    10.1016/j.marenvres.2019.01.013
  29. Andrade, M.; De Marchi, L.; Soares, A.M.V.M.; Rocha, R.J.M.; Figueira, E.; Freitas, R.. "Are the effects induced by increased temperature enhanced in Mytilus galloprovincialis submitted to air exposure?". Science of the Total Environment 647 (2019): 431-440. http://www.scopus.com/inward/record.url?eid=2-s2.0-85050916787&partnerID=MN8TOARS.
    10.1016/j.scitotenv.2018.07.293
  30. Madalena Andrade; Lucia De Marchi; Carlo Pretti; Federica Chiellini; Andrea Morelli; Amadeu M.V.M. Soares; Rui J.M. Rocha; Etelvina Figueira; Rosa Freitas. "Are the impacts of carbon nanotubes enhanced in Mytilus galloprovincialis submitted to air exposure?". Aquatic Toxicology 202 (2018): 163-172. https://doi.org/10.1016/j.aquatox.2018.07.006.
    10.1016/j.aquatox.2018.07.006
  31. Inês C. Rosa; Rui J.M. Rocha; Igor Cruz; Ana Lopes; Natália Menezes; Narcisa Bandarra; Ruy Kikuchi; et al. "Effect of tidal environment on the trophic balance of mixotrophic hexacorals using biochemical profile and photochemical performance as indicators". Marine Environmental Research 135 (2018): 55-62. https://doi.org/10.1016/j.marenvres.2018.01.018.
    10.1016/j.marenvres.2018.01.018
  32. Araújo, M.J.; Rocha, R.J.M.; Soares, A.M.V.M.; Benedé, J.L.; Chisvert, A.; Monteiro, M.S.. "Effects of UV filter 4-methylbenzylidene camphor during early development of Solea senegalensis Kaup, 1858". Science of the Total Environment 628-629 (2018): 1395-1404. http://www.scopus.com/inward/record.url?eid=2-s2.0-85042233261&partnerID=MN8TOARS.
    10.1016/j.scitotenv.2018.02.112
  33. Rodrigues, A.C.M.; Machado, A.L.; Bordalo, M.D.; Saro, L.; Simão, F.C.P.; Rocha, R.J.M.; Golovko, O.; et al. "Invasive Species Mediate Insecticide Effects on Community and Ecosystem Functioning". Environmental Science and Technology 52 8 (2018): 4889-4900. http://www.scopus.com/inward/record.url?eid=2-s2.0-85045583289&partnerID=MN8TOARS.
    10.1021/acs.est.8b00193
  34. Carla Pereira; Catarina Moreirinha; Luís Teles; Rui J.M. Rocha; Ricardo Calado; Jesús L. Romalde; Maria L. Nunes; Adelaide Almeida; Rocha, Rui. "Application of phage therapy during bivalve depuration improves Escherichia coli decontamination". Food Microbiology 61 (2017): 102-112. https://doi.org/10.1016%2Fj.fm.2016.09.003.
    10.1016/j.fm.2016.09.003
  35. Rocha, Rui; Miguel C. Leal; Rui J.M. Rocha; Jaime M. Anaya-Rojas; Igor C.S. Cruz; Christine Ferrier-Pagès. "Trophic and stoichiometric consequences of nutrification for the intertidal tropical zoanthid Zoanthus sociatus". Marine Pollution Bulletin 119 1 (2017): 169-175. http://www.sciencedirect.com/science/article/pii/S0025326X17302710.
    https://doi.org/10.1016/j.marpolbul.2017.03.054
  36. Rocha, Rui; C. L. Elias; R. J. M. Rocha; M. J. Feio; E. Figueira; S. F. P. Almeida. "Influence of the colonizing substrate on diatom assemblages and implications for bioassessment: a mesocosm experiment". Aquatic Ecology 51 1 (2017): 145-158. https://link.springer.com/article/10.1007%2Fs10452-016-9605-0.
    http://dx.doi.org/10.1007/s10452-016-9605-0
  37. Rocha, Rui; Cátia Figueiredo; Miguel Baptista; Inês C. Rosa; Ana Rita Lopes; Gisela Dionísio; Rui J.M. Rocha; et al. "3D chemoecology and chemotaxonomy of corals using fatty acid biomarkers: Latitude, longitude and depth". Biochemical Systematics And Ecology 70 (2017): 35-42. http://www.sciencedirect.com/science/article/pii/S0305197816302368.
    https://doi.org/10.1016/j.bse.2016.10.016
  38. Inês C. Rosa; Rui J. M. Rocha; Ana Lopes; Igor C. S. Cruz; Ricardo Calado; Narcisa Bandarra; Ruy K. Kikuchi; et al. "Impact of air exposure on the photobiology and biochemical profile of an aggressive intertidal competitor, the zoanthid Palythoa caribaeorum". Marine Biology 163 11 (2016): https://doi.org/10.1007%2Fs00227-016-3002-z.
    10.1007/s00227-016-3002-z
  39. Ana P.L. Costa; Ricardo Calado; Bruna Marques; Ana I. Lillebø; João Serôdio; Amadeu M.V.M. Soares; Ester A. Serrão; Rui J.M. Rocha. "The effect of mixotrophy in the ex situ culture of the soft coral Sarcophyton cf. glaucum". Aquaculture 452 (2016): 151-159. https://doi.org/10.1016/j.aquaculture.2015.10.032.
    10.1016/j.aquaculture.2015.10.032
  40. Tânia Pimentel; Rui J.M. Rocha; Rui Rosa; Amadeu M.V.M. Soares; Newton C.M. Gomes; Miguel C. Leal; Ricardo Calado; Rocha, Rui. "Bacterial communities from corals cultured ex situ remain stable under different light regimes — Relevance for in toto aquaculture". Aquaculture 450 (2016): 258-261. https://doi.org/10.1016%2Fj.aquaculture.2015.08.006.
    10.1016/j.aquaculture.2015.08.006
  41. Yolanda J. Silva; Catarina Moreirinha; Carla Pereira; Liliana Costa; Rui J.M. Rocha; Ângela Cunha; Newton C.M. Gomes; et al. "Biological control of Aeromonas salmonicida infection in juvenile Senegalese sole ( Solea senegalensis ) with Phage AS-A". Aquaculture 450 (2016): 225-233. https://doi.org/10.1016%2Fj.aquaculture.2015.07.025.
    10.1016/j.aquaculture.2015.07.025
  42. Carla Pereira; Catarina Moreirinha; Rui J.M. Rocha; Ricardo Calado; Jesús L. Romalde; Maria L. Nunes; Adelaide Almeida; Rocha, Rui. "Application of bacteriophages during depuration reduces the load of Salmonella Typhimurium in cockles". Food Research International 90 (2016): 73-84. https://doi.org/10.1016%2Fj.foodres.2016.10.031.
    10.1016/j.foodres.2016.10.031
  43. Miguel C. Leal; Igor C. S. Cruz; Carlos R. Mendes; Ricardo Calado; Ruy K. P. Kikuchi; Rui Rosa; Amadeu M. V. M. Soares; et al. "Photobiology of the zoanthid Zoanthus sociatus in intertidal and subtidal habitats". Marine and Freshwater Research 67 12 (2016): 1991-1991. https://doi.org/10.1071%2Fmf15300.
    10.1071/mf15300
  44. Rocha, Rui. "Marine ornamental fish imports in the European Union: an economic perspective". Fish and Fisheries (2016):
    10.1111/faf.12120
  45. Rocha, Rui. "Aquaculture of marine non-food organisms: what, why and how?". Reviews In Aquaculture (2016): http://onlinelibrary.wiley.com/doi/10.1111/raq.12168/abstract.
    10.1111/raq.12168
  46. Rocha, Rui. "Concurrent imaging of chlorophyll fluorescence, Chlorophyll a content and green fluorescent proteins-like proteins of symbiotic cnidarians". Marine Ecology (2015): http://onlinelibrary.wiley.com/doi/10.1111/maec.12164/abstract;jsessionid=7AE3238126495C713146E5CE7838E67A.f04t03.
    10.1111/maec.12164
  47. Rocha, Rui. "Development of a Standardized Modular System for Experimental Coral Culture". Journal of the World Aquaculture Society (2015):
    10.1111/jwas.12186
  48. Rocha, Rui. "Unraveling the interactive effects of climate change and oil contamination on laboratory simulated estuarine benthic communities". Global Change Biology (2015):
    10.1111/gcb.12801
  49. Rocha, Rui. "Effects of elevated temperature and CO2 on intertidal microphytobenthos". BMC Ecology (2015):
    10.1186/s12898-015-0043-y
  50. Rocha, Rui. "White but not bleached: photophysiological evidence from white Montastraea cavernosa reveals potential overestimation of coral bleaching". Marine Biology (2015):
    10.1007/s00227-015-2633-9
  51. Rocha, R.J.M.; Silva, A.M.B.; Vaz Fernandes, M.H.; Cruz, I.C.S.; Rosa, R.; Calado, R.; Rui J. M. Rocha. "Contrasting light spectra constrain the macro and microstructures of scleractinian corals". PLoS ONE 9 8 (2014): http://www.scopus.com/inward/record.url?eid=2-s2.0-84932173838&partnerID=MN8TOARS.
    10.1371/journal.pone.0105863
  52. Fernandes Cátia; Mendes Catarina; Moreira André; Chambel João; Rocha Rui; Leandro Sergio; Pedrosa Rui. "LEDs light spectrum effect on the success of fragmentation and growth of the leather coral Sarcophyton spp.". Frontiers in Marine Science 1 (2014): https://doi.org/10.3389%2Fconf.fmars.2014.02.00137.
    10.3389/conf.fmars.2014.02.00137
  53. Rocha, Rui. "Marine Microorganism-Invertebrate Assemblages: Perspectives to Solve the “Supply Problem” in the Initial Steps of Drug Discovery". Marine Drugs (2014): http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000339989300009&KeyUID=WOS:000339989300009.
    10.3390/md12073929
  54. Rui J.M. Rocha; Ricardo Calado; Paulo Cartaxana; Joana Furtado; João Serôdio; Rocha, Rui. "Photobiology and growth of leather coral Sarcophyton cf. glaucum fragments stocked under low light in a recirculated system". Aquaculture 414-415 (2013): 235-242. http://dx.doi.org/10.1016/j.aquaculture.2013.08.018.
    10.1016/j.aquaculture.2013.08.018
  55. Francisco J. R. C. Coelho; Rui J. M. Rocha; Ana C. C. Pires; Bruno Ladeiro; José M. Castanheira; Rodrigo Costa; Adelaide Almeida; et al. "Development and validation of an experimental life support system for assessing the effects of global climate change and environmental contamination on estuarine and coastal marine benthic communities". Glob Change Biol 19 8 (2013): 2584-2595. http://dx.doi.org/10.1111/gcb.12227.
    10.1111/gcb.12227
  56. Rui J.M. Rocha; João Serôdio; Miguel Costa Leal; Paulo Cartaxana; Ricardo Calado. "Effect of light intensity on post-fragmentation photobiological performance of the soft coral Sinularia flexibilis". Aquaculture 388-391 (2013): 24-29. http://dx.doi.org/10.1016/j.aquaculture.2013.01.013.
    10.1016/j.aquaculture.2013.01.013
  57. Francesca Cima; Giulia Ferrari; Nuno G.C. Ferreira; Rui J.M. Rocha; João Serôdio; Susana Loureiro; Ricardo Calado. "Preliminary evaluation of the toxic effects of the antifouling biocide Sea-Nine 211™ in the soft coral Sarcophyton cf. glaucum (Octocorallia, Alcyonacea) based on PAM fluorometry and biomarkers". Marine Environmental Research 83 (2013): 16-22. http://dx.doi.org/10.1016/j.marenvres.2012.10.004.
    10.1016/j.marenvres.2012.10.004
  58. Makridis, P.; Ribeiro, L.; Rocha, R.; Dinis, M.T.. "Corrigendum to Influence of microalgae supernatant, and bacteria isolated from microalgae cultures, on microbiology, and digestive capacity of larval gilthead seabream, Sparus aurata, and Senegalese Sole, Solea senegalensis [Journal of the World Aquaculture Society, 41, 5, 780-790] doi: 10.1111/j.1749-7345.2010.00420.x". Journal of the World Aquaculture Society 44 5 (2013): 757-757. http://www.scopus.com/inward/record.url?eid=2-s2.0-84893064502&partnerID=MN8TOARS.
    10.1111/jwas.12087
  59. Marcela C. M. Vaz; Teresa A. P. Rocha-Santos; Rui J. M. Rocha; Isabel Lopes; Ruth Pereira; Armando C. Duarte; Peter J. Rubec; Ricardo Calado; Sebastian C. A. Ferse. "Excreted Thiocyanate Detects Live Reef Fishes Illegally Collected Using Cyanide—A Non-Invasive and Non-Destructive Testing Approach". PLoS ONE 7 4 (2012): e35355-e35355. http://dx.doi.org/10.1371/journal.pone.0035355.
    10.1371/journal.pone.0035355
  60. Pavlos Makridis; Laura Libeiro; Rui Rocha; Maria Teresa Dinis. "Influence of Microalgae Supernatant, and Bacteria Isolated from Microalgae Cultures, on Microbiology, and Digestive Capacity of Larval Gilthead Seabream, Sparus aurata, and Senegalese Sole, Solea senegalensis". Journal of the World Aquaculture Society 41 5 (2010): 780-790. http://dx.doi.org/10.1111/j.1749-7345.2010.00420.x.
    10.1111/j.1749-7345.2010.00420.x
  61. Rui J Rocha; Laura Ribeiro; Ricardo Costa; Maria Teresa Dinis. "Does the presence of microalgae influence fish larvae prey capture?". Aquaculture Res 39 4 (2008): 362-369. http://dx.doi.org/10.1111/j.1365-2109.2007.01746.x.
    10.1111/j.1365-2109.2007.01746.x
Preprint
  1. T.M. Stuij; D.F.R. Cleary; R.J.M. Rocha; A.R.M. Polonia; D.A.M. Silva; J.C. Frommlet; A. Louvado; et al. "Development and validation of an experimental life support system to study the impact of ultraviolet B radiation and temperature on coral reef microbial communities". 2023. https://doi.org/10.1101/2023.03.01.530425.
    10.1101/2023.03.01.530425
  2. T.M. Stuij; D.F.R. Cleary; N.J. de Voogd; R.J.M. Rocha; A.R.M. Polonia; D.A.M. Silva; J.C. Frommlet; et al. "Humic substances mitigate adverse effects of elevated temperature with potentially critical repercussions for coral reef resilience". 2023. https://doi.org/10.1101/2023.04.14.536861.
    10.1101/2023.04.14.536861

Other

Other output
  1. Broodstock Systems. 2017. Rui J.M. Rocha; Maria Teresa Dinis. https://doi.org/10.1002%2F9781119169147.ch6.
    10.1002/9781119169147.ch6
Activities

Oral presentation

Presentation title Event name
Host (Event location)
2021/07/23 How microencapsulated diets can improve bivalve valorization for global food security The Animal Health Symposium
CIIMAR
2021/07/23 How to improve bivalve’s quality through different harvesting, transport and packaging methods The Animal Health Symposium
CIIMAR
2020/11 Can a short-term exposure to microplastics affect the biochemical and metabolic responses of farmed meagre larvae (Argyrosomus regius; Asso, 1801)? MICRO2020 International Conference
2020/11 Can the toxicity of polyethylene microplastics be enhanced in the presence of engineered nanoclays? MICRO2020 International Conference
2019/10/07 Cockles harvesting, transport and packaging: how to improve the quality of product in consumers table Aquaculture Europe 2019
European Aquaculture Society (Berlin, Germany)
2019/10/07 Testing different prototype diets for coral Aquaculture Aquaculture Europe 2019
European Aquaculture Society (Berlin, Germany)
2019/09 Marine bivalves produced in aquaculture: a nutritious food source or a potential public health risk? 3rd International Conference on Food Contaminants - Challenges in Risk Assessment
INSA - National Institute of Health Dr. Ricardo Jorge (Aveiro, Portugal)
2019/03/07 Optimization of depuration process of Ruditapes decussatus produced in C-grade areas to legally commercialization values Aquaculture 2019
World Aquaculture Society (New Orleans, United States)
2019/03/07 Oxidative stress responses and energy budget in diploid and triploid Oncorhynchus mykiss cultured in temperate regions Aquaculture 2019
World Aquaculture Society (New Orleans, United States)
2018/12/18 Effects of methionine and threonine on oxidative stress and energy allocation in rainbow trout under increased temperatures 3rd AquaImprove – Aquaculture Research Workshop
CIIMAR (Matosinhos, Portugal)
2018/06/15 Effects of essential amino acids on oxidative stress and energy allocation in rainbow trout under increased temperatures. VII Iberian Congress of Ichthyology
SIBIC 2018 (Faro, Portugal)
2018/06/12 Different times of supplementation with methionine and threonine alter long-term antioxidant capability and energy allocation of rainbow trout under increased water temperature 31st congress of the ESCPB
European Society for Comparative Biochemistry and Physiology (Porto, Portugal)
2018/06/12 Oxidative defenses and energy allocation of diploid and triploid O. mykiss exposed to different temperatures during annual cycle VII Iberian Congress of Ichthyology
Iberian Society for Ichthyology (Faro, Portugal)
2018/01 Contribuição da Aquacultura Comunitária para a Conservação Marinha: cultivo experimental de ostra no norte de Moçambique. Primeiro congresso de Biologia Marinha dos países de língua portuguesa Primeiro congresso de Biologia Marinha dos países de língua portuguesa
Universidade do Algarve (Faro, Portugal)
2018/01 Community-based Aquaculture: a path to sustainable development. Sharing best practice in marine conservation and research. Workshop - Zoological Society of London organization
ZSL/Ciimar (Matosinhos, Portugal)
2015/12 Optimization of the depuration of bivalve molluscs Middle East and Central Asia Aquaculture
World Aquaculture Society (Tehran, Iran)
2015/12 Optimization of ex situ aquaculture of corals - the role of light and heterotrophic feeding. Middle East and Central Asia Aquaculture
World Aquaculture Society (Tehran, Iran)
2012/09 The effect of light photosynthetically active radiation in the photosynthetic performance of cultured soft coral Sinularia flexibilis and Sarcophyton glaucum AQUA 2012
European Aquaculture Society (Prague, Czech Republic)
2012/07/09 Coral imaging: distribution of zooxanthellae, photosynthetic activity, and fluorescent proteins 12th International Coral Reef Symposium
ICRS 2012 (Cairns, Australia)
2011/06 The effects of light in the photobiology of cultured monoclonal fragments of the ahermatypic coral Sinularia flexibilis. World Aquaculture World Aquaculture
World Aquaculture Society (Natal, Brazil)
2010/10 The effect of light in the photosynthetic pigments and zooxanthellae density of cultivated ahermatypic coral Sarcophyton sp. Aquaculture Europe 2010
European Aquaculture Society (Porto, Portugal)

Supervision

Thesis Title
Role 		Degree Subject (Type)
Institution / Organization
2019 - 2024 Squaring the circle of marine bivalves’ valorization through the depuration process: how to combine food safety, food loss reduction and nutritional value?
Co-supervisor of Vitória Sofia Pereira
 PhD Program in Biology (PhD)
Universidade de Aveiro, Portugal
2019 - 2023 Development of handmade diets for tilapia nutrition in community based aquaculture in Mozambique¿
Co-supervisor of Henriques Oreste Bustani
 PhD Program in Biology and Ecology of Global Change (PhD)
Universidade de Aveiro, Portugal
2019 - 2023 Feasibility of integrated tilapia aquaculture in São Tomé e Príncipe in a climate change scenario¿
Supervisor of Aida Maria D'Almeida
Universidade de Aveiro, Portugal
2019 - 2023 Monitoring systems for the sustainable production of mollusc bivalves in the Portuguese coast¿
Supervisor of Teresa Maria Coelho Baptista
Universidade de Aveiro, Portugal
2020 - 2022/03 Effects of different temperature exposure on Oreochromis niloticus juveniles fed with an handmand diet
Supervisor of Sílvia Fabíola Saraiva Pires
Master in ecotoxicology and risk analysis (Master)
Universidade de Aveiro, Portugal
2018 - 2022 “Caracterização do sector das pescas e da aquacultura em Angola, reflexões sobre o passado, contributos e estratégias para o futuro”
Co-supervisor
Universidade de Aveiro, Portugal
2018 - 2022 “Otimização dos processos de depuração, embalamento e transporte de moluscos bivalves, atendendo aos requisitos fisiológicos de cada espécie”
Co-supervisor of Maria de Lourdes Sardinha
Universidade de Aveiro, Portugal
2019 - 2021/12 Biochemical effects of the addition of diets on the purification process of bivalve molluscs and subsequent shelf-life
Supervisor of Adriana Isabel Rodrigues Ferreira
 Master in Applied Marine Biology (Master)
Universidade de Aveiro, Portugal
2019 - 2021/12 Advantages of using microencapsulated diets in ex situ cultivation of Montipora digitata
Supervisor of Pedro Miguel da Silva Soares Pinto de Seabra
 Master in Applied Marine Biology (Master)
Universidade de Aveiro, Portugal
2019 - 2021/07 Community-based aquaculture of bivalve molluscs in the North of Mozambique: optimization of production and preservation methods
Supervisor of Sara de Ornelas Nobre Carraça
 Master in Applied Ecology (Master)
Universidade de Aveiro, Portugal
2019/10 - 2021/02 Influence of salinity in the depuration process of bivalve molluscs (Crassostrea gigas)
Supervisor of João André Carreira Menano Silvestre
 Master in Marine and Atmospheric Sciences (Master)
2019 - 2021/02 Effect of salinity on the success of the clearance of Solen marginatus
Co-supervisor of Miguel Bruno Félix Colaço
 Master in Applied Marine Biology (Master)
2019 - 2021 Advantages of microfragmentation in the cultivation of the coral Montipora capricornis
Supervisor of José Diogo dos Santos Gomes
Universidade de Aveiro, Portugal
2019 - 2021 Ruditapes decussatus in climate change scenarios, relationship between food availability and temperature
Co-supervisor of João Maria de Sousa Araújo Zagalo Saraiva
 Master in Aquaculture (Master)
Instituto Politécnico de Leiria Escola Superior de Turismo e Tecnologia do Mar de Peniche, Portugal
2019 - 2020 Estudo preliminar do cultivo de ostra Pinctada sp. na aldeia de Quiwia - Distrito de Palma¿
Supervisor
Universidade Lurio, Mozambique

Universidade de Aveiro, Portugal
2019 - 2020 Potential of lost fishing gears for the release of microplastics¿
Supervisor of Sandra Silva
Universidade de Aveiro, Portugal
2019 - 2020 Weanning performance and feed conversion of Oreochromis niloticus juveniles reared with handmade diets¿
Supervisor of Pedro Agostinho
Universidade de Aveiro, Portugal
2019 - 2020 Growth performance and feed conversion of Oreochromis niloticus produced with handmade diets¿
Supervisor of Ercílio Chauque
Universidade Lurio, Mozambique

Universidade de Aveiro, Portugal
2019 - 2020 Identification of raw ingredients with potential for fish feeds in Cabo Delgado, Mozambique¿
Supervisor of Sérgio José
Universidade Lurio, Mozambique

Universidade de Aveiro, Portugal
2019 - 2020 Comparison of Oreochromis mossambicus fertility under different stock densities and sex ratios¿
Supervisor of Gonçalves Barnabé
Universidade Lurio, Mozambique

Universidade de Aveiro, Portugal
2019 - 2020 Insects as a protein source for tilápia Aquaculture in Mozambique¿
Supervisor of Cosme Malikito
Universidade Lurio, Mozambique

Universidade de Aveiro, Portugal
2019 - 2020 Olivine dissolution to remediate ocean acidification impact on coral reefs¿
Supervisor of Catarina Latães
Universidade de Aveiro, Portugal
2016 - 2020 “Corals as therapeutic alternatives for fish farms in a climate changing world”
Co-supervisor of Ana Pedroso de Lima Costa
 Phd program in biology and ecology of global change (PhD)
Universidade de Aveiro, Portugal
2018/01 - 2019/07 Optimization of coral aquaculture (Scleractinia) Montipora digitata/ Otimização da aquacultura de corais (Scleractinia) Montipora digitata
Supervisor
 Master in Applied Marine Biology (Master)
Universidade de Aveiro, Portugal
2019 - 2019 “Otimização dos processos de captura, transporte, depuração e embalamento do berbigão (Cerastoderma edule) produzido em aquacultura”
Supervisor of Diogo Martins
Universidade de Aveiro, Portugal
2019 - 2019 Otimização do cultivo ex situ dos corais Palythoa sp. e Zoanthus sp. em sistemas fechados¿
Supervisor of Igor Bernardo
Universidade de Aveiro, Portugal
2019 - 2019 “Efeito da exposição ao ar e ao sol da ostra Pinctada sp. cultivada em tabuleiros”
Supervisor
Universidade Lurio, Mozambique

Universidade de Aveiro, Portugal
2018 - 2019 “Effect of emergent pollutants on photosynthetic corals, under a 100 year climate change scenario”
Supervisor of Davide Silva
Universidade de Aveiro, Portugal
2018 - 2019 “Avaliação do potencial de cultivo de corais em Moçambique para fins de repovoamento”
Supervisor of Jamen Júlio Ali Mussa
Universidade de Aveiro, Portugal
2018 - 2019 “Effects of microplastics to the coral Zoanthus sociatus might be driven by polymer type in short-term exposure scenarios”
Co-supervisor
Universidade de Aveiro, Portugal
2017/09 - 2018/12 Effect of temperature on the purification process of Ruditapes decussatus reared in C-grade areas
Supervisor
 Master in Applied Marine Biology (Master)
Universidade de Aveiro, Portugal
2018 - 2018 “Melhoramento dos processos de acondicionamento, transporte e embalamento de moluscos bivalves: da captura à comercialização”
Supervisor of Luísa Alves Inácio
Universidade de Aveiro, Portugal
2018 - 2018 “Efeito de solventes orgânicos no coral Sarcophyton glaucum: um contributo para avaliações ecotoxicológicas”.
Co-supervisor of José Luis Nunes
Universidade de Aveiro, Portugal
2018 - 2018 “Condições socioeconómicas para o desenvolvimento de aquacultura marinha na costa de Chuíba – cidade de Pemba, recorrendo a espécies autóctones”
Supervisor of Galvano Matutino Neteque
Universidade de Aveiro, Portugal
2018 - 2018 “The worst El Ninõ ever: how the Coral reefs of Pemba resisted?”
Co-supervisor of Maida Lobo
Universidade de Aveiro, Portugal

Universidade Lurio, Mozambique
2018 - 2018 “Avaliação da presença da doença da mancha branca nos crustáceos no meio selvagem e de cultivo em Moçambique”
Supervisor of Saide Sefo Selemane
Universidade Lurio, Mozambique

Universidade de Aveiro, Portugal
2018 - 2018 “Otimização do cultivo ex situ do zoantário Palythoa cf. variabilis em sistemas recirculados”
Supervisor of Ana Rita Figueiredo
Universidade de Aveiro, Portugal
2018 - 2018 "Effects of essential amino acids in the energy budget of rainbow trout Oncorhynchus mykiss cultured under warming waters."
Supervisor of Sílvia Pires
 Biologia e Geologia (Degree)
Universidade de Aveiro, Portugal
2018 - 2018 “Efeito da temperature no cultivo de truta arco-iris em sistemas recirculados”
Supervisor of Miguel Guerreiro
Universidade de Aveiro, Portugal
2018 - 2018 Evaluation of cellular energy allocation in Oncorhynchus mykiss exposed to thermal stress”
Co-supervisor of Júlia Gomes
Universidade de Aveiro, Portugal
2017 - 2017 Effects of the organic UV filters, oxybenzone and 4-methylbenzylidene camphor, on the photobiology of the hexacoral Zoanthus sp.
Supervisor of Jessica Mota
Universidade de Aveiro, Portugal
2016 - 2016 Otimização do processo de depuração de moluscos bivalves
Supervisor of Maria H. Correia
Universidade de Aveiro, Portugal
2015 - 2015 Optimization of heterotrophic feeding of the soft coral Sarcophyton cf. glaucum
Supervisor of Filipa F. Ribeiro
Universidade de Aveiro, Portugal
2015 - 2015 Otimização da fragmentação e dos processos de fixação na reprodução assexuada do coral mole Sarcophyton sp.
Supervisor
Universidade de Aveiro, Portugal

Universidade do Algarve, Portugal
2015 - 2015 "The effect of light and heterotrophy in the ex situ culture of the soft coral Sarcophyton cf. glaucum"
Supervisor of Ana Pedroso de Lima Costa
Universidade do Algarve, Portugal

Jury of academic degree

Topic
Role 		Candidate name (Type of degree)
Institution / Organization
2020/01/09 "Vulnerability of reef-building corals towards global change"
Thesis Member
 Maria Andreia Duarte Dias (PhD)
Fundação da Faculdade de Ciências da Universidade de Lisboa, Portugal
2019/12/13 "Feeding strategies to improve gorwth in clownfish larvae (Amphiprion ocellaris)"
Thesis Member
 Maria Ana de Bragança Reis de Morais (Master)
Universidade do Algarve, Portugal
2019/10/15 "Avaliação do efeito da acidificação dos oceanos nos pólipos da medusa Phyllorhiza punctata (Von Lendenfeld, 1885)"
(Thesis) Arguer
 Daniel Fernandes Marques (Master)
Instituto Politécnico de Leiria Escola Superior de Turismo e Tecnologia do Mar de Peniche, Portugal
2019/10/15 "Aquacultura ornamental - da ciência ao comércio"
(Thesis) Arguer
 João Nuno Amaral dos Reis (Master)
Instituto Politécnico de Leiria Escola Superior de Turismo e Tecnologia do Mar de Peniche, Portugal
2019/05/24 "Acondicionamento, reprodução e cultivo larvar de Holothuria tubulosa (Gmelin, 1790)"
(Thesis) Arguer
 Eliana Filipa dos Santos Venâncio (Master)
Instituto Politécnico de Leiria Escola Superior de Turismo e Tecnologia do Mar de Peniche, Portugal
2018/11/05 "Relatório de estágio no Aquário Vasco da Gama"
(Thesis) Arguer
 Rui Patrício dos Santos Calado (Master)
Escola Superior de Turismo e Tecnologia do Mar do Instituto Politécnico de Leiria, Portugal
2018/11/05 "Manutenção de espécies ornamentais marinhas e otimização das suas formas de cultivo"
(Thesis) Arguer
 João André Cunha Lopes (Master)
Instituto Politécnico de Leiria Escola Superior de Turismo e Tecnologia do Mar de Peniche, Portugal
2016/12/07 "Manutenção, reprodução e transporte de organismos ornamentais"
(Thesis) Arguer
 Tânia Patrícia Carvalho Araújo (Master)
Escola Superior de Turismo e Tecnologia do Mar do Instituto Polite´cnico de Leiria, Portugal