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Passionate researcher with 10 years of post-PhD experience in diverse area of plant molecular biology, Vitiviniculture, plant physiology, Plant pathology, genetic engineering and modern genome editing technology, tissue culture, biochemistry, nanotechnology, biocontrol agents development and formulations, transcriptomics, proteomics, metabolomics. The research profile includes 1745 citations, H index-20 and 94 peer reviewed published scientific communications including 1 granted patent and 1 provisional submission recently. I gained academic and industrial research experience while working in national and international institutes and industries of good repute. I did my first postdoc project (September 2013- January 2016) at department of Biology, University of Minho, Braga, Portugal where I studied the recalcitrance nature of Hypericum perfoliatum and the complex molecular mechanism with its interaction to Agrobacterium tumefaciens. During this tenure, I had an opportunity to supervise a team of 3 young researchers (one PhD and 2 master students) where I was responsible to design the experimental setup and ensuring the high value results. I started my second postdoc (July 2016-March 2020) in Department of Agronomy, Vitiviniculture lab, University of Tras-O-Montes and Alto Douro, Vila Real, Portugal. My studies were based on grapevines during this project; which brought me plenty of experience in metabolomics pathway engineering, CRISPR mediated genome editing in grapevine, team leading, industrial experience and communication with stake holders. During this tenure, I have been working as a senior member in the lab and management of one research line in the INNOVINE&WINE Innovation platform of Vineyard and Wine (cofinanced by European Regional Development Fund, FEDER, with a total budget of 5 293 984,76 ) project. I have been leading a team of 7 peoples (supervise 2 MSc) for performing large scale field trials on different vineyards in Douro region. The research was performed in collaboration with academia and industries and the major outcome during this work was chitosan based nanomaterial preparation and application in vineyards. The findings were promising which was patented nationally and for European Union territories; while several good articles have been published. Additionally; my research has been ranked second for ENOFORUM AWARD in The Spanish edition of Enoforum 2020 among 35 scientific works in the wine sector from 21 research groups of different countries. After 2 postdoc projects, I moved to Ireland to gain experience in industrial research and started working as Principal Investigator in MBIO (Bio-control group, Monaghan Biosciences, Monaghan county, Ireland). Major duties during this tenure were leading the team of scientists, technicians and research trainees, Project management, establishment of new research facilities, Collaborations with universities. I have been also responsible for scale-up process development, validation of biocontrol/bio stimulants/plant growth promoting biological products and product commercialization. Later I joined as PhD researcher (January 2022-December 2022) in InnovPlantProtect Collaborative Laboratory, Department of Protection of Specific Crops, Elvas, Portugal where 1 provisional patent have been submitted within a year of my tenure. Currently i am working as Researcher biologist in UTAD. I did my PhD from Plant Molecular Biology and Genetic Engineering Department, Defense Institute of Bioenergy Research, India. Recently I have been invited as an external expert by National Research and Development Agency (ANID), Government of Chile for evaluation of research proposals for national funding. Additionally i have been interviewed by french magazine regarding my recent research in Grapevine as a new and sustainable practice in vitiviniculture.
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Identification

Personal identification

Full name
Rupesh Kumar Singh
Gender
Male

Citation names

  • Singh, Rupesh

Author identifiers

Ciência ID
0E1F-ED9C-4F23
ORCID iD
0000-0002-2536-1967
Google Scholar ID
https://scholar.google.com/citations?user=vPIqviYAAAAJ&hl=en

Email addresses

  • rupeshbio702@gmail.com (Personal)
  • rupeshbio702@gmail.com (Personal)

Telephones

Mobile phone
  • 936329756 (Personal)

Addresses

  • 114, seg esq, rua do fujacal, 4705-097, Braga, Braga, Portugal (Personal)

Websites

Knowledge fields

  • Natural sciences - Biological Sciences - Plant sciences
  • Agrarian Sciences - Agrarian and Food Biotechnology - Agricultural Biotechnology and Food Biotechnology
  • Agrarian Sciences - Agriculture, Forestry and Fisheries - Horticulture
  • Agrarian Sciences - Agriculture, Forestry and Fisheries - Viticulture
  • Agrarian Sciences - Agriculture, Forestry and Fisheries - Plant Breeding and Plant Protection
  • Agrarian Sciences - Agrarian and Food Biotechnology - Agricultural Biotechnology and Food Biotechnology
  • Agrarian Sciences - Agrarian and Food Biotechnology - GM Technology
  • Engineering and Technology - Industrial Biotechnology - Industrial Biotechnology
  • Natural sciences - Biological Sciences - Botany

Languages

Language Speaking Reading Writing Listening Peer-review
English Proficiency (C2) Proficiency (C2) Proficiency (C2) Proficiency (C2) Proficiency (C2)
Portuguese Advanced (C1) Upper intermediate (B2) Upper intermediate (B2) Upper intermediate (B2) Upper intermediate (B2)
Hindi (Mother tongue)
Education
Degree Classification
2007/02/13 - 2011/08/10
Concluded
 Biotechnology (Doktor (PhD))
Major in Plant Biotechnology (molecular biology and genetic engineering )
Kumaun University, India
"Transcription profiling of low temperature responsive genes of Cicer microphyllum" (THESIS/DISSERTATION)
 qualified
2002/07/02 - 2004/06/30
Concluded
 Master Biotechnology (Master)
Major in Plant Biotechnology
Chhatrapati Shahu Ji Maharaj University, India
"Molecular marker based diversity analysis in different Chickpea varieties" (THESIS/DISSERTATION)
 First Division
Affiliation

Science

Category
Host institution 		Employer
2023/10/01 - Current Researcher (Research) Universidade de Trás-os-Montes e Alto Douro, Portugal
2023/01/01 - Current Researcher (Research) Universidade do Minho Centro de Biologia Molecular e Ambiental, Portugal
Universidade do Minho Centro de Biologia Molecular e Ambiental, Portugal
2022/01/01 - Current Researcher (Research) InnovPlantProtect Collaborative Laboratory, Department of Protection of Specific Crops, Elvas, Portuga, Portugal
2021/01/01 - 2021/12/31 Researcher (Research) Universidade de Trás-os-Montes e Alto Douro Centro de Química Vila Real, Portugal
2020/10/01 - 2020/12/31 Principal Investigator (Research) Monaghan Biosciences, Ireland
2016/07/12 - 2020/03/31 Postdoc (Research) Universidade de Trás-os-Montes e Alto Douro Centro de Química Vila Real, Portugal
2013/09/13 - 2016/01/31 Postdoc (Research) Universidade do Minho Departamento de Biologia, Portugal
Projects

Grant

Designation Funders
2024/08/02 - 2028/06/02 “Holistic evaluation of agroecological measures” (HEAL; ID197)
HEAL; ID197
Invited Scientist Fellow
Alanus Hochschule gGmbH - Campus II Bonn Brühler Strasse, Germany
Submitted

Contract

Designation Funders
2023/10/01 - 2026/04/30 ECONUTRI, HORIZON-CL6-2022-ZEROPOLLUTION-01
101081858
Integration into Research Grant Fellow
Universidade de Trás-os-Montes e Alto Douro Centro de Investigação e de Tecnologias Agro-Ambientais e Biologicas, Portugal
Ongoing
2016/07/13 - 2020/03/31 INNOVINE&WINE, n.º da operação NORTE-01-0145-FEDER-000038
NORTE- 01-0145-FEDER-000038
Post-doc
Universidade de Trás-os-Montes e Alto Douro Centro de Ciência Animal e Veterinária, Portugal
Concluded
2013/09/02 - 2015/04/30 Molecular mechanisms of Agrobacterium recognition and defense activation in recalcitrant plant species
UMINHO/BI3-M/CITAB/2013/PTDC/AGR-GPL /119211/2010
Post-doc Fellow
Universidade do Minho Centro de Biologia Funcional de Plantas, Portugal
Concluded
Outputs

Publications

Book
  1. Singh, Rupesh. Composting of farm residues by nature-based solutions; A potential key towards sustainable agricultural practices. United States: Springer One New York Plaza, Suite 4600 New York, NY 10004-1562, USA www.springer.com. 2025.
    Under revision • Editor
  2. Singh, Rupesh. Nanotechnology Applications in Soil Science: From Remediation to Precision Agriculture. United States: IGI Global. 2024.
    In press • Editor
  3. Singh, Rupesh. Cicer microphyllum, a wonder plant for abiotic stress management under cold arid zones. LAP Lambert Academic Publishing (2014). 2014.
    Published
Book chapter
  1. Abhishek Singh; Bhavana Tomar; Anna Harutyunyan; Priyadarshani Rajput; Tatiana Minkina; Saglara Mandzhieva; Mohamed S. Elshikh; et al. "Utilizing Nanotechnology in Agriculture". In A Balancing Approach Between Environmental Health and Risks. 2024.
    10.4018/979-8-3693-1471-5.ch019
  2. Aishwarya Sharma; Abhishek Singh; Priyadarshani Rajput; Tatiana Minkina; Saglara Mandzhieva; Mohamed S. Elshikh; Shen-Ming Chena; et al. "Revolutionizing Agricultural Sustainability and Food Security and Management to Achieve SDGs Goals via Nanotechnology". 2024.
    10.4018/979-8-3693-1471-5.ch013
  3. Karen Ghazaryan; Aman Verma; Sapna Rawat; Priyadarshani Rajput; Tatiana Minkina; Saglara Mandzhieva; Mohamed S. Elshikh; et al. "Implementing Sustainable Nano-Bioremediation for Emerging Pollutants". In An Environmentally Friendly Remediation Strategy. 2024.
    10.4018/979-8-3693-1471-5.ch016
  4. Abhishek Singh; Bhavana Tomar; Gohar Margaryan; Priyadarshani Rajput; Tatiana Minkina; Saglara Mandzhieva; Mohamed S. Elshikh; et al. "Emerging Technologies for Sustainable Soil Management and Precision Farming". 2024.
    10.4018/979-8-3693-1471-5.ch010
  5. Aman Verma; Abhishek Singh; Sapna Rawat; Priyadarshani Rajput; Tatiana Minkina; Saglara Mandzhieva; Mohamed S. Elshikh; et al. "Unveiling Nanomaterial-Induced Toxicity". In Navigating Challenges to Modern Cultivation and Soil Management Practices. 2024.
    10.4018/979-8-3693-1471-5.ch011
  6. Karen Ghazaryan; Aman Verma; Sapna Rawat; Amrit Warshini; Priyadarshani Rajput; Tatiana Minkina; Mohamed S. Elshikh; et al. "Green Remediation Harnessing Plant-Based Strategies for Removal of Emerging Soil Contaminants". 2024.
    10.4018/979-8-3693-1471-5.ch004
  7. Vishnu D. Rajput; Abhishek Singh; Bhavana Tomar; Tatiana Minkina; Hasmik S. Movsesyan; Mohamed S. Elshikh; Shen-Ming Chena; Rupesh Kumar Singh; Karen Ghazaryan. "Nanoparticle-Mediated Approaches in Agriculture Addressing Abiotic Stress From Soil to Plant Cells". 2024.
    10.4018/979-8-3693-1471-5.ch005
  8. Singh, Rupesh. "Invasive Plant Pathogens and Their Impacts on Major Crops: Identifying the Worst Offenders of the European Union". In Sustainable Management of Invasive Species. World Scientific Publishing Europe Ltd., 2024.
    Accepted
  9. Singh, Rupesh. "Global Status of Commercial Organic and Nano-Agri-Inputs and Trade Practices". In Organic and Biogenic Nano-Agri-Inputs in Sustainable Crop Production. Nova Science Publishers, 2024.
    Accepted
  10. Singh, Shweta; Sharma, Lav; Singh, Rupesh Kumar; Rajput, Vishnu D.; Sushkova, Svetlana; Minkina, Tatiana; Verma, Krishan K.. Corresponding author: Singh, Rupesh Kumar. "Bacillus-Based Biocontrol". In Microbial Based Land Restoration Handbook, Volume 2, 161-176. CRC Press, 2023.
    Published • 10.1201/9781003147077-7
  11. Jain, Raksha; Bohra, Nitin; Singh, Rupesh Kumar; Upadhyay, Sudhir K.; Srivastava, Abhishek K.; Rajput, Vishnu D.. Corresponding author: Singh, Rupesh Kumar. "Nanomaterials for Plants: From Ecophysiology to Signaling Mechanisms and Nutrient Uptake". In The Role of Nanoparticles in Plant Nutrition under Soil Pollution, 183-197. Springer International Publishing, 2022.
    Published • 10.1007/978-3-030-97389-6_8
  12. Singh, Shweta; Pradhan, Arunava; Singh, Rupesh Kumar; Singh, Abhishek; Minkina, Tatiana; Rajput, Vishnu D.. Corresponding author: Singh, Rupesh Kumar. "Nanoparticles: Physiology, Chemistry, and Biochemistry". In The Role of Nanoparticles in Plant Nutrition under Soil Pollution, 21-42. Springer International Publishing, 2022.
    Published • 10.1007/978-3-030-97389-6_2
  13. Bohra, Nitin; Singh, Rupesh Kumar; Jain, Raksha; Sharma, Lav; Sathyanarayana, Eetela; Quiroz-Figueroa, Francisco Roberto; Rajput, Vishnu D.. Corresponding author: Singh, Rupesh Kumar. "Endophytic Bacteria for Plant Growth Promotion". In Bacterial Endophytes for Sustainable Agriculture and Environmental Management, 187-199. Springer Singapore, 2022.
    Published • 10.1007/978-981-16-4497-9_9
  14. Bohra, Nitin; Singh, Rupesh Kumar; Jain, Raksha; Sharma, Lav; Sathyanarayana, Eetela; Quiroz-Figueroa, Francisco Roberto; Rajput, Vishnu D.. "Endophytic Bacteria for Plant Growth Promotion". In Bacterial Endophytes for Sustainable Agriculture and Environmental Management, 187-199. Springer Singapore, 2022.
    10.1007/978-981-16-4497-9_9
  15. Bohra, N.; Singh, R.K.; Jain, R.; Sharma, L.; Sathyanarayana, E.; Quiroz-Figueroa, F.R.; Rajput, V.D.. "Endophytic Bacteria for Plant Growth Promotion". 2022.
  16. Singh, Rupesh. "Status and policies of GM crops in Russia". 2021.
    DOI: 10.1016/B978-0-12-820780-2.00003-0
  17. Singh, Abhishek; Rajput, Vishnu; Singh, Alok Kumar; Sengar, Rakesh Singh; Singh, Rupesh Kumar; Minkina, Tatiana. "Transformation Techniques and Their Role in Crop Improvements: A Global Scenario of GM Crops". In Policy Issues in Genetically Modified Crops, 515-542. Elsevier, 2021.
    10.1016/b978-0-12-820780-2.00023-6
  18. Singh, Shweta; Singh, Rupesh Kumar; Anandhan, Sivalingam; Priya, Jyoti; Jaiswal, Sandeep; Kumar, Ashok. Corresponding author: Singh, Rupesh Kumar. "Advances in Genome Editing". In Genome Editing in Plants, 227-240. CRC Press, 2021.
    10.1201/9780367815370-16
  19. Jaiswal, Sandeep; Kumar, Ashok; Priya, Jyoti; Anandhan, Sivalingam; Singh, Shweta; Singh, Rupesh Kumar. Corresponding author: Singh, Rupesh Kumar. "Genome Editing for Metabolic Engineering in Plants". In Genome Editing in Plants, 155-170. CRC Press, 2021.
    Published • 10.1201/9780367815370-11
  20. Singh, Rupesh. "MODERN SUSTAINABLE TECHNIQUES FOR ENHANCING CROP PRODUCTION". In Sustainable Soil Fertility Management. © 2021 Nova Science Publishers, Inc., 2021.
    Published
  21. Singh, Rupesh. "Modern sustainable conservation practices for sustainable soil management". In Sustainable Soil Fertility Management. Nova Science Publishers, 2021.
    Published
  22. Singh, A.; Rajput, V.; Mehrotra, R.; Pal, N.; Singh, V.K.; Minkina, T.; Chokheli, V.A.; Singh, R.K.. "Modern sustainable techniques for enhancing crop production". 2021.
  23. Jain, R.; Bohra, N.; Singh, R.K.; Sharma, L.; Quiroz-Figueroa, F.R.; Rajput, V.. "Modern sustainable conservation practices for sustainable soil management". 2021.
  24. Singh, Abhishek; Rajput, Vishnu; Singh, Alok Kumar; Sengar, Rakesh Singh; Singh, Rupesh Kumar; Minkina, Tatiana. "Transformation Techniques and Their Role in Crop Improvements: A Global Scenario of GM Crops". In Policy Issues in Genetically Modified Crops, 515-542. Elsevier, 2021.
    10.1016/b978-0-12-820780-2.00023-6
  25. Chokheli, V.; Rajput, V.; Dmitriev, P.; Varduny, T.; Minkina, T.; Singh, R.K.; Singh, A.. "Status and Policies of GM Crops in Russia". 2020.
  26. Singh, A.; Rajput, V.; Singh, A.K.; Sengar, R.S.; Singh, R.K.; Minkina, T.. "Transformation Techniques and Their Role in Crop Improvements: A Global Scenario of GM Crops". 2020.
  27. Sharma, Lav; Bohra, Nitin; Singh, Rupesh Kumar; Marques, Guilhermina. "Potential of Entomopathogenic Bacteria and Fungi". In Microbes for Sustainable Insect Pest Management, 115-149. Springer International Publishing, 2019.
    10.1007/978-3-030-23045-6_4
  28. Singh, Rupesh Kumar; Bohra, Nitin; Sharma, Lav; Anandhan, Sivalingam; Ruiz-May, Eliel; Quiroz-Figueroa, Francisco Roberto. Corresponding author: Singh, Rupesh Kumar. "Inspection of Crop Wild Relative (Cicer microphyllum) as Potential Genetic Resource in Transgenic Development". In Advances in Plant Transgenics: Methods and Applications, 253-272. Springer Singapore, 2019.
    10.1007/978-981-13-9624-3_12
  29. Singh, Rupesh Kumar; Sharma, Lav; Bohra, Nitin; Anandhan, Sivalingam; Ruiz-May, Eliel; Quiroz-Figueroa, Francisco Roberto. Corresponding author: Singh, Rupesh Kumar. "Recent Developments in Generation of Marker-Free Transgenic Plants". In Advances in Plant Transgenics: Methods and Applications, 127-142. Springer Singapore, 2019.
    10.1007/978-981-13-9624-3_6
  30. Singh, Rupesh Kumar; Bohra, Nitin; Sharma, Lav; Anandhan, Sivalingam; Ruiz-May, Eliel; Quiroz-Figueroa, Francisco Roberto. "Inspection of Crop Wild Relative (Cicer microphyllum) as Potential Genetic Resource in Transgenic Development". In Advances in Plant Transgenics: Methods and Applications, 253-272. Springer Singapore, 2019.
    10.1007/978-981-13-9624-3_12
  31. Singh, R.K.; Sharma, L.; Bohra, N.; Anandhan, S.; Ruiz-May, E.; Quiroz-Figueroa, F.R.. "Recent developments in generation of marker-free transgenic plants". 2019.
  32. Singh, R.K.; Bohra, N.; Sharma, L.; Anandhan, S.; Ruiz-May, E.; Quiroz-Figueroa, F.R.. "Inspection of crop wild relative (Cicer microphyllum) as potential genetic resource in transgenic development". 2019.
  33. Singh, Rupesh. "Construction of Hypericin Gland-Specific cDNA Library via Suppression Subtractive Hybridization.". 2016.
  34. Singh, Rupesh Kumar; Ruiz-May, Eliel; García-Pérez, Luz María; Quiroz-Figueroa, Francisco R.. "Somatic Embryogenesis in Jatropha curcas". In Somatic Embryogenesis: Fundamental Aspects and Applications, 401-412. Springer International Publishing, 2016.
    10.1007/978-3-319-33705-0_22
  35. Singh, R.K.; Ruiz-May, E.; García-Pérez, L.M.; Quiroz-Figueroa, F.R.. "Somatic embryogenesis in Jatropha curcas". 2016.
  36. Singh, R.K.; Hou, W.; Franklin, G.. "Construction of hypericin gland-specific cDNA library via suppression subtractive hybridization". 2016.
    10.1007/978-1-4939-3332-7_22
Conference paper
  1. RUPESH KUMAR SINGH. "Exploring Winemaking By-Products of Tinto Cão Grapes: Antioxidant and Antimicrobial Activity against Multiresistant Bacteria". Paper presented in The 2nd International Electronic Conference on Antibiotics—Drugs for Superbugs: Antibiotic Discovery, Modes of Action and Mechanisms of Resistance, 2023.
  2. Goufo, Piebiep; Singh, Rupesh Kumar; Cortez, Isabel; Piebiep Goufo; Rupesh kumar singh; Isabel Cortez. "Metabolites Differentiating Asymptomatic and Symptomatic Grapevine Plants (Vitis vinifera ‘Malvasia-Fina’) Infected with Esca Complex Disease-Associated Fungi". 2021.
    10.3390/iecps2021-11923
  3. Silva, Vanessa; Peirone, Cecília; Singh, Rupesh; Falco, Virgílio; Pires, Isabel; Miranda, Carla; Maltez, Luís; et al. "In vitro evaluation of antibacterial activity and wound healing power of a gel based on phenolic compounds extracted from by-products of the wine industry". Paper presented in 6th International Electronic Conference on Medicinal Chemistry, 2020.
    Published • 10.3390/ecmc2020-07264
  4. Ribeiro, Jessica; Silva, Vanessa; Singh, Rupesh; AIres, Alfredo; Carvalho, Rosa; Falco, Virgílio; Igrejas, Gilberto; Poeta, Patrícia. "Antimicrobial and Antioxidant Activity of Phenolic Compounds Extracted from Wine Industry By-Products of <em>Tinto Cão</em> Variety". Paper presented in 1st International Electronic Conference on Microbiology, 2020.
    10.3390/ecm2020-07137
  5. Singh, Rupesh. "Chitosan upregulates the genes of the ROS pathway and enhances the antioxidant potential of grapes". Paper presented in Spanish edition of Enoforum 2020, Zaragoza, 2020.
    Published
  6. Singh, Rupesh. "Chitosan applications in vineyards and effects on gene expression". Paper presented in The Spanish edition of Enoforum 2020, 2020.
    https://doi.org/10.53144/INFOWINE.EN.2021.04.02
  7. Singh, Rupesh. "Molecular and biochemical insight upon chitosan application on vitis vinifera L. CV. Touriga Franca and Tinto Cao". Paper presented in ENOFORUM WEB, May 5-7, 2020, 2020.
    Published
  8. Singh, Rupesh. "Effect of foliar mitigation treatments on Touriga Nacional grape berry quality". Paper presented in 14º Encontro Nacional de Química dos Alimentos, Viana do Castelo, 2018.
    Published
  9. Singh, Rupesh. "Increased accumulation of anthocyanins in vine stems upon chitosan application: alternate use of winery waste produce to extract natural colour additives for the food industry". Paper presented in XIV Encontro de Química dos AlimentosAt, Viana do Castelo, 2018.
    Published
  10. Singh, Rupesh. "Lignin and flavonoid content increases in Hypericum perforatum cell wall after Agrobacterium tumefaciens co-cultivation". 2014.
    10.1055/s-0034-1394589
  11. Singh, Rupesh. "Agrobacterium- elicited Hypericum perforatum cell methanolic extract shows antibacterial activity against human pathogens.". 2014.
    10.1055/s-0034-1394698
Conference poster
  1. Singh, Rupesh. "FOREST DEBRIS-BASED BIOCHAR APPLICATION IN COMPOSTING PROCESS TO REDUCE GREENHOUSE GAS EMISSIONS: A NATURE BASED SUSTAINABLE SOLUTION". Paper presented in Agriculture for life, life for agriculture, 2024.
  2. Singh, Rupesh. "Chitosan modulate anthocyanin profile in vine-stems: potential use of vitiviniculture residues for industrial purpose.". Paper presented in ECO-BIO Dublin, Ireland., 2018.
  3. Singh, Rupesh. "In vitro grown shoot cuttings of Vitis vinifera L. cv. red grapes instigate secondary metabolites production upon Agrobacterium tumefaciens inoculation". Paper presented in ECO-BIO Dublin, Ireland, 2018.
  4. Singh, Rupesh. "Valorizing faba bean for animal feed supplements via biotechnological approach; suggestion paper". Paper presented in ECO-BIO Dublin, Ireland., 2018.
  5. Singh, Rupesh. "Metallothionin like gene from Cicer microphyllum is regulated by low-temperature stress". Paper presented in 5th World Congress of Cellular and Molecular Biology, Devi Ahilya Vishwavidyalaya, India, 2009.
  6. Singh, Rupesh. "Molecular cloning of cold-induced Inositol 1,4,5-trisphosphate kinase a key component for Ca2+ signal transduction". Paper presented in National Seminar on Frontiers in Biotechnology, Bharathiar University, Coimbatore, Tamilnadu, India, 2009.
  7. Singh, Rupesh. "Isolation of low temperature stress regulated genes from Cicer microphyllum by suppression subtraction hybridization". Paper presented in International conference on grain legumes: quality improvement, value addition and trade, 2009.
  8. Singh, Rupesh. "Cloning and in silico analysis of cold induced NAC transcription factor of Lepidium latifolium". Paper presented in International Conference on Current Trends in Biotechnology & Implications in Agriculture, Sardar Vallabh Bhai Patel University of Agriculture and Technology, Meerut, India, 2009.
Journal article
  1. Singh, Abhishek; Rawat, Sapna; Rajput, Vishnu D.; Minkina, Tatiana; Mandzhieva, Saglara; Eloyan, Arevik; Singh, Rupesh Kumar; et al. "Nanotechnology Products in Agriculture and Environmental Protection: Advances and Challenges". Egyptian Journal of Soil Science 64 4 (2024): 0-0. http://dx.doi.org/10.21608/ejss.2024.300047.1802.
    10.21608/ejss.2024.300047.1802
  2. Manokari, M.; Faisal, Mohammad; Alatar, Abdulrahman A.; Singh, Rupesh Kumar; Shekhawat, Mahipal S.. "Nano-silicon stabilized biometric and foliar micro-morpho-anatomical traits during in vitro propagation of Cyperus rotundus L. – A model C4 ecotype". Industrial Crops and Products 218 (2024): 118852. http://dx.doi.org/10.1016/j.indcrop.2024.118852.
    10.1016/j.indcrop.2024.118852
  3. João Ricardo Sousa; Abhishek Singh; Karen Ghazaryan; Rupesh Kumar Singh; Vishnu D. Rahput ; Henrique Trindade; j. Coutinho. Corresponding author: Rupesh Kumar Singh. "Prediction of mass loss in different organic materials under field Mediterranean conditions: influence of the initial chemical quality". Journal of Ecological Engineering (2024):
    In press
  4. Lenar R. Valiullin; Ascar R. Gibadullin; Vladislav I. Egorov; Rinat S. Mukhammadiev; Rishat S. Mukhammadiev; Vladimir V. Sakhnov; Rupesh Kumar Singh; et al. "Ensuring Tree Protection, Growth and Sustainability by Microbial Isolates". Sustainability (2024): https://doi.org/10.3390/su16177837.
    10.3390/su16177837
  5. Singh, Abhishek; Rajput, Vishnu D.; Agrawal, Shreni; Ghazaryan, Karen; Minkina, Tatiana; Al Tawaha, Abdel Rahman Mohammad; Chauhan, Avnish; et al. "Nanoparticles Mediated Salt Stress Resilience: A Holistic Exploration of Physiological, Biochemical, and Nano-omics Approaches". Reviews of Environmental Contamination and Toxicology 262 1 (2024): http://dx.doi.org/10.1007/s44169-024-00070-4.
    10.1007/s44169-024-00070-4
  6. Ghazaryan, Karen; Pandey, Divya; Singh, Sakshi; Varagyan, Vahagn; Alexiou, Athanasios; Petropoulos, Dimitrios; Kriemadis, Athanasios; et al. "Enhancing Crop Production: Unveiling the Role of Nanofertilizers in Sustainable Agriculture and Precision Nutrient Management". Egyptian Journal of Soil Science 64 3 (2024): 0-0. http://dx.doi.org/10.21608/ejss.2024.282778.1748.
    10.21608/ejss.2024.282778.1748
  7. João Ricardo Sousa; Abhishek Singh; Karen Ghazaryan; Rupesh Kumar Singh; Henrique Trindade; João Coutinho. "In-vitro Digestibility Organic Materials – Relation with Field Mass Loss Litter Bag Method". Journal of Ecological Engineering (2024): https://doi.org/10.12911/22998993/189947.
    10.12911/22998993/189947
  8. Singh, Abhishek; Sharma, Aishwarya; Singh, Omkar; Rajput, Vishnu D.; Movsesyan, Hasmik S.; Minkina, Tatiana; Alexiou, Athanasios; et al. "In-depth Exploration of Nanoparticles for Enhanced Nutrient Use Efficiency and Abiotic Stresses Management: Present Insights and Future Horizons". Plant Stress (2024): 100576. http://dx.doi.org/10.1016/j.stress.2024.100576.
    10.1016/j.stress.2024.100576
  9. Sereda, Mikhail; Petrenko, Victoria; Kapralova, Olga; Chokheli, Vasily; Varduni, Tatyana; Dmitriev, Pavel; Minkina, Tatiana; et al. "Establishment of an In Vitro Micropropagation Protocol for Hibiscus moscheutos L. ‘Berry Awesome’". Horticulturae 10 1 (2023): 21. http://dx.doi.org/10.3390/horticulturae10010021.
    10.3390/horticulturae10010021
  10. M, Cokul Raj; M, Manokari; Dey, Abhijit; Faisal, Mohammad; Alatar, Abdulrahman Abdullah; Singh, Rupesh Kumar; Shekhawat, Mahipal Singh. "Improvements in morphometric and structural traits of Vitex trifolia L. to exogenous application of nano-silicon in vitro". South African Journal of Botany 160 (2023): 613-621. http://dx.doi.org/10.1016/j.sajb.2023.07.049.
    10.1016/j.sajb.2023.07.049
  11. Vinogradova, Natalya; Vinogradova, Elena; Chaplygin, Victor; Mandzhieva, Saglara; Kumar, Pradeep; Rajput, Vishnu D.; Minkina, Tatiana; et al. "Phenolic Compounds of the Medicinal Plants in an Anthropogenically Transformed Environment". Molecules 28 17 (2023): 6322. http://dx.doi.org/10.3390/molecules28176322.
    10.3390/molecules28176322
  12. Ibrahim, Muhammad; Akhtar, Naveed; Wahab, Abdul; Alrefaei, Abdulwahed Fahad; Almutairi, Mikhlid H.. "Exploring Wild Edible Plants in Malakand, Pakistan: Ethnobotanical and Nutritional Insights". Sustainability 15 17 (2023): 12881. http://dx.doi.org/10.3390/su151712881.
    10.3390/su151712881 • Editor
  13. M., Manokari; Dey, Abhijit; Faisal, Mohammad; Alatar, Abdulrahman A.; Singh, Rupesh Kumar; Shekhawat, Mahipal S.. "In vitro Tuberization using Silicon Nanoparticles and short-term cold Storage of mini-tubers of Dioscorea pentaphylla L.". BioNanoScience (2023): http://dx.doi.org/10.1007/s12668-023-01185-z.
    10.1007/s12668-023-01185-z
  14. Quiroz-Figueroa, Francisco Roberto; Cruz-Mendívil, Abraham; Ibarra-Laclette, Enrique; García-Pérez, Luz María; Gómez-Peraza, Rosa Luz; Hanako-Rosas, Greta; Ruíz-May, Eliel; et al. "Cell wall-related genes and lignin accumulation contribute to the root resistance in different maize (Zea mays L.) genotypes to Fusarium verticillioides (Sacc.) Nirenberg infection". Frontiers in Plant Science 14 (2023): http://dx.doi.org/10.3389/fpls.2023.1195794.
    10.3389/fpls.2023.1195794
  15. Manokari, M.; Raj, M. Cokul; Dey, Abhijit; Faisal, Mohammad; Alatar, Abdulrahman A.; Singh, Rupesh Kumar; Arumugam, N.; Shekhawat, Mahipal S.. "Development of stress tolerance in micropropagated plantlets of Dioscorea pentaphylla L. using seismic stress". Plant Cell, Tissue and Organ Culture (PCTOC) (2023): http://dx.doi.org/10.1007/s11240-023-02549-9.
    10.1007/s11240-023-02549-9
  16. Manokari, M.; Dey, Abhijit; Faisal, Mohammad; Alatar, Abdulrahman A.; Singh, Rupesh Kumar; Shekhawat, Mahipal S.. "Silicon Nanoparticles (SiNPs) Positively Affect Morpho-Structural Differentiation in Micropropagated Plantlets of Santalum album L.". Silicon (2023): http://dx.doi.org/10.1007/s12633-023-02558-5.
    10.1007/s12633-023-02558-5
  17. Singh, Rupesh. "Polyethylene glycol-mediated drought stress improved macro- and micro-morphology of leaves of Hedyotis biflora (L.) Lam. in vitro". Plant cell tissue and organ culture (2023):
    Accepted
  18. Manokari, M.; Cokul Raj, M.; Dey, Abhijit; Faisal, Mohammad; Alatar, Abdulrahman A.; Singh, Rupesh Kumar; Shekhawat, Mahipal S.. "Silicon Nanoparticles Moderated Morphometric Deficiencies by Improving Micro-Morpho-Structural Traits in Thunbergia erecta (Benth.) T. Anderson". Silicon (2023): http://dx.doi.org/10.1007/s12633-023-02451-1.
    10.1007/s12633-023-02451-1
  19. Bhattacharjee, Subhradip; Panja, Amitava; Panda, Moumita; Dutta, Subham; Dutta, Susanta; Kumar, Rakesh; Kumar, Dinesh; et al. "How Did Research on Conservation Agriculture Evolve over the Years? A Bibliometric Analysis". Sustainability 15 3 (2023): 2040. http://dx.doi.org/10.3390/su15032040.
    10.3390/su15032040
  20. Manokari, M.; Cokulraj, M.; Badhepuri, Mahesh Kumar; Dey, Abhijit; Faisal, Mohammad; Alatar, Abdulrahman A.; Singh, Rupesh Kumar; Shekhawat, Mahipal S.. "Microstructural and histochemical modifications in leaves at successive stages of in vitro development of the terrestrial orchid Spathoglottis plicata Blume". Horticulture, Environment, and Biotechnology (2023): http://dx.doi.org/10.1007/s13580-022-00485-9.
    10.1007/s13580-022-00485-9
  21. Lysenko, Vladimir; D. Rajput, Vishnu; Kumar Singh, Rupesh; Guo, Ya; Kosolapov, Alexey; Usova, Elena; Varduny, Tatyana; et al. "Chlorophyll fluorometry in evaluating photosynthetic performance: key limitations, possibilities, perspectives and alternatives". Physiology and Molecular Biology of Plants 28 11-12 (2022): 2041-2056. http://dx.doi.org/10.1007/s12298-022-01263-8.
    Published • 10.1007/s12298-022-01263-8
  22. Sumira Malik; archna dhasmana; Subham Preetam; Prof. Yogendra Kumar Mishra; Vishal Chaudhary; Sweta Parmita Bera; Anuj Ranjan; et al. "Exploring Microbial-Based Green Nanobiotechnology for Wastewater Remediation: A Sustainable Strategy". Nanomaterials (2022): https://www.mdpi.com/2079-4991/12/23/4187.
    10.3390/nano12234187
  23. Rupesh Kumar Singh; Eliel Ruiz-May; Vishnu D. Rajput; Tatiana Minkina; Rosa Luz Gómez-Peraza; Krishan K. Verma; Mahipal S. Shekhawat; et al. Corresponding author: Rupesh Kumar Singh. "Viewpoint of Chitosan Application in Grapevine for Abiotic Stress/Disease Management towards More Resilient Viticulture Practices". Agriculture (2022): https://doi.org/10.3390/agriculture12091369.
    10.3390/agriculture12091369
  24. Francisco R. Quiroz-Figueroa; Juan Luis Monribot-Villanueva; Esaú Bojórquez-Velázquez; Rosa L. Gómez-Peraza; José Miguel Elizalde Contreras; Mirna V. Bautista-Valle; José A. Guerrero-Analco; et al. "Proteometabolomic Analysis Reveals Molecular Features Associated with Grain Size and Antioxidant Properties amongst Chickpea (Cicer arietinum L.) Seeds Genotypes". Antioxidants (2022): https://www.mdpi.com/2076-3921/11/10/1850.
    10.3390/antiox11101850
  25. Abhishek singh; R.S. Sengar; Vishnu D Rajput; Tatiana Minkina; Rupesh kumar singh. "Zinc Oxide Nanoparticles Improve Salt Tolerance in Rice Seedlings by Improving Physiological and Biochemical Indices". Agriculture (2022): https://www.mdpi.com/2077-0472/12/7/1014.
    10.3390/agriculture12071014
  26. M, Manokari; Badhepuri, Mahesh Kumar; M, Cokulraj; Sandhya, Dulam; Dey, Abhijit; Kumar, Vijay; Faisal, Mohammad; et al. "Validation of meta-Topolin in organogenesis, improved morpho-physio-chemical responses, and clonal fidelity analysis in Dioscorea pentaphylla L. – an underutilized yam species". South African Journal of Botany 145 (2022): 284-292. http://dx.doi.org/10.1016/j.sajb.2021.12.039.
    10.1016/j.sajb.2021.12.039
  27. Vishnu D. Rajput; Tatiana Minkina; Sudhir K. Upadhyay; Arpna Kumari; Anuj Ranjan; Saglara Mandzhieva; Svetlana Sushkova; Rupesh Kumar Singh; Krishan K. Verma. "Nanotechnology in the Restoration of Polluted Soil". Nanomaterials 12 5 (2022): 769-769. https://doi.org/10.3390/nano12050769.
    10.3390/nano12050769
  28. Verma, Krishan K.; Song, Xiu-Peng; Tian, Dan-Dan; Guo, Dao-Jun; Chen, Zhong-Liang; Zhong, Chang-Song; Nikpay, Amin; et al. "Influence of Silicon on Biocontrol Strategies to Manage Biotic Stress for Crop Protection, Performance, and Improvement". Plants 10 10 (2021): 2163. https://doi.org/10.3390/plants10102163.
    doi.org/10.3390/plants10102163
  29. Kolesnikov, Sergey; Timoshenko, Alena; Minnikova, Tatiana; Tsepina, Natalia; Kazeev, Kamil; Akimenko, Yulia; Zhadobin, Alexander; et al. "Impact of Metal-Based Nanoparticles on Cambisol Microbial Functionality, Enzyme Activity, and Plant Growth". Plants 10 10 (2021): 2080. http://dx.doi.org/10.3390/plants10102080.
    10.3390/plants10102080
  30. Singh, Rupesh. "Interaction between Arbuscular Mycorrhiza and Rhizobacteria with Legumes : A Promising Strategy to Fight with Abiotic Stress". World Journal of Agriculture and Soil Science 7 3 (2021):
    Published
  31. Vishnu D Rajput; Tatiana Minkina; Morteza Feizi; Arpna Kumari; Masudulla Khan; Saglara Mandzhieva; Svetlana Sushkova; et al. "Effects of Silicon and Silicon-Based Nanoparticles on Rhizosphere Microbiome, Plant Stress and Growth". Biology (2021): https://www.mdpi.com/2079-7737/10/8/791.
    10.3390/biology10080791
  32. Hou, Weina; Singh, Rupesh K.; Martins, Viviana; Tenllado, Francisco; Franklin, Gregory; Dias, Alberto C. P.. "Transcriptional responses of Hypericum perforatum cells to Agrobacterium tumefaciens and differential gene expression in dark glands". Functional Plant Biology 48 9 (2021): 936-947. http://dx.doi.org/10.1071/fp20292.
    Published • 10.1071/fp20292
  33. Prof. G.S. Shekhawat; Lovely Mahawar; Priyadarshani Rajput; Vishnu D Rajput; Tatiana Minkina; Rupesh kumar singh. "Role of Engineered Carbon Nanoparticles (CNPs) in Promoting Growth and Metabolism of Vigna radiata (L.) Wilczek: Insights into the Biochemical and Physiological Responses". Plants (2021): https://www.mdpi.com/2223-7747/10/7/1317.
    10.3390/plants10071317
  34. Sergey Kolesnikov; Natalia Tsepina; Tatyana Minnikova; Kamil Kazeev; Saglara Mandzhieva; Svetlana Sushkova; Tatiana Minkina; et al. "Influence of Silver Nanoparticles on the Biological Indicators of Haplic Chernozem". Plants (2021): https://www.mdpi.com/2223-7747/10/5/1022.
    10.3390/plants10051022
  35. Vishnu D Rajput; Harish; Rupesh kumar singh; Dr. Krishan Kumar Verma; Lav Sharma; Francisco Roberto Quiroz-Figueroa; Mukesh Meena; et al. Corresponding author: Rupesh kumar singh. "Recent Developments in Enzymatic Antioxidant Defence Mechanism in Plants with Special Reference to Abiotic Stress". Biology (2021): https://www.mdpi.com/2079-7737/10/4/267.
    10.3390/biology10040267
  36. Lav Sharma; Irene Oliveira; Fátima Gonçalves; Fernando Raimundo; Rupesh kumar singh; Laura Torres; Guilhermina Marques. "Effect of Soil Chemical Properties on the Occurrence and Distribution of Entomopathogenic Fungi in Portuguese Grapevine Fields". Pathogens (2021): https://www.mdpi.com/2076-0817/10/2/137.
    10.3390/pathogens10020137
  37. Sharma, Lav; Bohra, Nitin; Rajput, Vishnu D.; Quiroz-Figueroa, Francisco Roberto; Singh, Rupesh Kumar; Marques, Guilhermina. "Advances in Entomopathogen Isolation: A Case of Bacteria and Fungi". Microorganisms 9 1 (2020): 16. http://dx.doi.org/10.3390/microorganisms9010016.
    10.3390/microorganisms9010016
  38. Román, Shamir Gabriel; Quiroz-Chávez, Jesús; Villalobos, Miguel; Urías-Gutiérrez, Vianey; Nava-Pérez, Eusebio; Ruíz-May, Eliel; Singh, Rupesh Kumar; et al. "A Global Screening Assay to Select for Maize Phenotypes with a High Tolerance or Resistance to Fusarium verticillioides (Sacc.) Nirenberg Rots". Agronomy 10 12 (2020): 1990. http://dx.doi.org/10.3390/agronomy10121990.
    Open access • 10.3390/agronomy10121990
  39. Chokheli, Vasiliy A.; Dmitriev, Pavel A.; Rajput, Vishnu D.; Bakulin, Semyon D.; Azarov, Anatoly S.; Varduni, Tatiana V.; Stepanenko, Victoria V.; et al. "Recent Development in Micropropagation Techniques for Rare Plant Species". Plants 9 12 (2020): 1733. http://dx.doi.org/10.3390/plants9121733.
    10.3390/plants9121733
  40. Hou, Weina; Singh, Rupesh Kumar; Zhao, Pan; Martins, Viviana; Aguilar, Emmanuel; Canto, Tomás; Tenllado, Francisco; Franklin, Gregory; Dias, Alberto Carlos Pires. "Overexpression of polygalacturonase-inhibiting protein (PGIP) gene from Hypericum perforatum alters expression of multiple defense-related genes and modulates recalcitrance to Agrobacterium tumefaciens in tobacco". Journal of Plant Physiology 253 (2020): 153268. http://dx.doi.org/10.1016/j.jplph.2020.153268.
    10.1016/j.jplph.2020.153268
  41. Meza-Menchaca, Thuluz; Singh, Rupesh Kumar; Quiroz-Chávez, Jesús; García-Pérez, Luz María; Rodríguez-Mora, Norma; Soto-Luna, Manuel; Gastélum-Contreras, Guadalupe; et al. "First Demonstration of Clinical Fusarium Strains Causing Cross-Kingdom Infections from Humans to Plants". Microorganisms 8 6 (2020): 947. http://dx.doi.org/10.3390/microorganisms8060947.
    10.3390/microorganisms8060947
  42. Goufo, Piebiep; Singh, Rupesh Kumar; Cortez, Isabel. "A Reference List of Phenolic Compounds (Including Stilbenes) in Grapevine (Vitis vinifera L.) Roots, Woods, Canes, Stems, and Leaves". Antioxidants 9 5 (2020): 398. http://dx.doi.org/10.3390/antiox9050398.
    10.3390/antiox9050398
  43. Singh, Rupesh Kumar; Afonso, Jessica; Nogueira, Marta; Oliveira, Ana A.; Cosme, Fernanda; Falco, Virgílio. Corresponding author: Singh, Rupesh Kumar. "Silicates of Potassium and Aluminium (Kaolin); Comparative Foliar Mitigation Treatments and Biochemical Insight on Grape Berry Quality in Vitis vinifera L. (cv. Touriga National and Touriga Franca)". Biology 9 3 (2020): 58. http://dx.doi.org/10.3390/biology9030058.
    10.3390/biology9030058
  44. Silva, Vanessa; Singh, Rupesh Kumar; Gomes, Nelson; Soares, Bruno Gonçalves; Silva, Adriana; Falco, Virgílio; Capita, Rosa; et al. "Comparative Insight upon Chitosan Solution and Chitosan Nanoparticles Application on the Phenolic Content, Antioxidant and Antimicrobial Activities of Individual Grape Components of Sousão Variety". Antioxidants 9 2 (2020): 178. http://dx.doi.org/10.3390/antiox9020178.
    10.3390/antiox9020178
  45. Singh, Rupesh Kumar; Martins, Viviana; Soares, Bruno; Castro, Isaura; Falco, Virgílio. "Chitosan Application in Vineyards (Vitis vinifera L. cv. Tinto Cão) Induces Accumulation of Anthocyanins and Other Phenolics in Berries, Mediated by Modifications in the Transcription of Secondary Metabolism Genes". International Journal of Molecular Sciences 21 1 (2020): 306. http://dx.doi.org/10.3390/ijms21010306.
    10.3390/ijms21010306
  46. Hou, Weina; Singh, Rupesh Kumar; Zhao, Pan; Martins, Viviana; Aguilar, Emmanuel; Canto, Tomás; Tenllado, Francisco; Dias, Alberto Carlos Pires. "Transgenic expression of Hyp-1 gene from Hypericum perforatum L. alters expression of defense-related genes and modulates recalcitrance to Agrobacterium tumefaciens". Planta 251 1 (2019): http://dx.doi.org/10.1007/s00425-019-03310-3.
    10.1007/s00425-019-03310-3
  47. Singh; Soares; Goufo; Castro; Cosme; Pinto-Sintra; Inês; Oliveira; Falco. Corresponding author: Singh. "Chitosan Upregulates the Genes of the ROS Pathway and Enhances the Antioxidant Potential of Grape (Vitis vinifera L. ‘Touriga Franca’ and ’Tinto Cão’) Tissues". Antioxidants 8 11 (2019): 525. http://dx.doi.org/10.3390/antiox8110525.
    10.3390/antiox8110525
  48. Singh, Rupesh Kumar; Anandhan, Sivalingam; García-Pérez, Luz María; Ruiz-May, Eliel; Nava Pérez, Eusebio; Quiroz-Figueroa, Francisco Roberto. "An efficient protocol for in vitro propagation of the wild legume Cicer microphyllum Benth., a crop wild relative of chickpea (Cicer arietinum L.)". In Vitro Cellular & Developmental Biology - Plant 55 1 (2019): 9-14. http://dx.doi.org/10.1007/s11627-018-09958-y.
    10.1007/s11627-018-09958-y
  49. Singh, Rupesh Kumar; Bohra, Nitin; Sharma, Lav. Corresponding author: Singh, Rupesh Kumar. "Valorizing faba bean for animal feed supplements via biotechnological approach: Opinion". Biocatalysis and Agricultural Biotechnology 17 (2019): 366-368. http://dx.doi.org/10.1016/j.bcab.2018.12.020.
    10.1016/j.bcab.2018.12.020
  50. Singh, R. K.; Singh, S.; Anandhan, S.; Shannon, L. M.; Quiroz-Figueroa, F. R.; Ruiz-May, E.. "First insights into the biochemical and molecular response to cold stress in Cicer microphyllum, a crop wild relative of chickpea (Cicer arietinum)". Russian Journal of Plant Physiology 64 5 (2017): 758-765. http://dx.doi.org/10.1134/s1021443717050120.
    10.1134/s1021443717050120
  51. Singh, Rupesh Kumar; Singh, Shweta; Pandey, Pankaj; Anandhan, Sivalingam; Goyary, Danswrang; Pande, Veena; Ahmed, Zakwan. Corresponding author: Singh, Rupesh Kumar. "Construction of cold induced subtracted cDNA library from Cicer microphyllum and transcript characterization of identified novel wound induced gene". Protoplasma 250 2 (2012): 459-469. http://dx.doi.org/10.1007/s00709-012-0429-z.
    10.1007/s00709-012-0429-z
  52. Singh, Shweta; Rathore, Meenal; Goyary, Danswrang; Singh, Rupesh Kumar; Anandhan, Sivalingam; Sharma, Dinesh K.; Ahmed, Zakwan. "Induced ectopic expression of At-CBF1 in marker-free transgenic tomatoes confers enhanced chilling tolerance". Plant Cell Reports 30 6 (2011): 1019-1028. http://dx.doi.org/10.1007/s00299-011-1007-0.
    10.1007/s00299-011-1007-0
  53. Singh, Rupesh K.; Anandhan, Sivalingam; Singh, Shweta; Patade, Vikas Y.; Ahmed, Zakwan; Pande, Veena. "Metallothionein-like gene from Cicer microphyllum is regulated by multiple abiotic stresses". Protoplasma 248 4 (2010): 839-847. http://dx.doi.org/10.1007/s00709-010-0249-y.
    10.1007/s00709-010-0249-y
  54. Sanjay Mohan Gupta; Singh, Rupesh; Ahmed, Zakwan. "Isolation and characterization of cold regulated genes from winter wheat (Triticum aestivum L.) by mRNA differential-display reverse transcriptase-PCR (DDRT-PCR)". PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES INDIA (2010):
  55. Gupta, S.M.; Singh, R.K.; Ahmed, Z.. "Isolation and characterization of cold regulated genes from winter wheat (Triticum aesiivum L.) by mRNA differential-display reverse transcriptase-PCR (DDRT-PCR)". Proceedings of the National Academy of Sciences India Section B - Biological Sciences 80 PART 2 (2010): 150-154. http://www.scopus.com/inward/record.url?eid=2-s2.0-80051926777&partnerID=MN8TOARS.
  56. Aslam, Mohammad; Sinha, Vimlendu B.; Singh, Rupesh K.; Anandhan, Sivalingam; Pande, Veena; Ahmed, Zakwan. "Isolation of cold stress-responsive genes from Lepidium latifolium by suppressive subtraction hybridization". Acta Physiologiae Plantarum 32 1 (2009): 205-210. http://dx.doi.org/10.1007/s11738-009-0382-4.
    10.1007/s11738-009-0382-4
  57. Singh, Rupesh. "Micrografting of In-Vitro cultured shoots of Pisum sativum L. onto potted root stocks.". Biochem. Cell. Arch. (2009):
  58. Shah, Pramila; Singh, N. K.; Khare, Neeraj; Rathore, Meenal; Anandhan, S.; Arif, M.; Singh, Rupesh Kumar; et al. "Agrobacterium mediated genetic transformation of summer squash (Cucurbita pepo L. cv. Australian green) with cbf-1 using a two vector system". Plant Cell, Tissue and Organ Culture 95 3 (2008): 363-371. http://dx.doi.org/10.1007/s11240-008-9450-5.
    10.1007/s11240-008-9450-5
Newsletter article
  1. Singh, Rupesh. "Associação de antocianinas-ácido ferúlico de castas tintas portuguesas para produzir corantes alimentares naturais", TecnoAlimentar - Revista da Indústria Alimentar, 2019, http://www.tecnoalimentar.pt/noticias/associacao-de-antocianinas-acido-ferolico-de-castas-tintas-portuguesas-para-produzir-corantes-alimentares-naturais/.
Online resource
  1. Singh, Rupesh. Agrobacterium-elicited Hypericum perforatum cell methanolic extract shows antibacterial activity against human pathogens. 2014. http://repositorium.sdum.uminho.pt/handle/1822/963 https://hdl.handle.net/1822/52445.
    DOI: 10.1055/s-0034-1394698
  2. Singh, Rupesh. Lignin and flavonoid content increases in Hypericum perforatum cell wall after Agrobacterium tumefaciens co-cultivation. 2014. DOI: 10.1055/s-0034-1394589.
Preprint
  1. Lenar R Valiullin; Rishat S Mukhammadiev; Vladislav Egorov; Rinat S Mukhammadiev; Ainur I Yarullin; Vladimir V Sakhnov; Rupesh Kumar Singh; et al. "Microorganism Isolates Stimulate Forest Crop Growth and Protection". 2023. https://doi.org/10.20944/preprints202310.0926.v1.
    10.20944/preprints202310.0926.v1

Intellectual property

Patent
  1. RUPESH KUMAR SINGH; VIRGÍLIO ALEXANDRE CARDOSO E FALCODA COSTA; ANA ALEXANDRA RIBEIRO COUTINHO DEOLIVEIRA. 2022. "PROCESSO PARA AUMENTAR O TEOR DEANTOCIANINAS E DE POLIFENÓIS TOTAIS NO VINHO TINTO". Portugal.
    Granted/Issued
Activities

Oral presentation

Presentation title Event name
Host (Event location)
2024/08/30 Synthesis and characterization of nano-biochar, interaction with emerging contaminants and application on organic matters to improve the nutrients recovery IHSS conference under the Session V: NOM and HS for environmental remediation
Italy (Rimini, Italy)
2024/07/19 Process to improve the qualitative characters in grapevine by sustainable application in vineyards workshop comparing Indian and Global agriculture education and research models
CAMBRIDGE INTERNATIONAL AGRICULTURE ORGANIZATION (Online, India)

Supervision

Thesis Title
Role 		Degree Subject (Type)
Institution / Organization
2024/05 - 2024/07 Estratégia de mitigação do efeito do lítio no solo com biochar e nanobiochar – um estudo de evitamento com Eisenia fetida
Co-supervisor of Paula Cristina Marinho Silva
 Licenciatura em Ciências do Ambiente (Degree)
Universidade de Trás-os-Montes e Alto Douro Centro de Investigação e de Tecnologias Agro-Ambientais e Biologicas, Portugal
2024/05 - 2024/07 Efeito da Aplicação de Biochar e Nanobiochar na Mineralização de N a partir da matéria orgânica de um arenossolo
Co-supervisor of João Pedro Cerqueira Mourão
 Ciências do Ambiente (Degree)
Universidade de Trás-os-Montes e Alto Douro Centro de Investigação e de Tecnologias Agro-Ambientais e Biologicas, Portugal
2024/05 - 2024/07 Efeito da aplicação de Biochar e nanoBiochar na emissão de gases com efeito de estufa a partir da matéria orgânica de um arenossolo
Co-supervisor
 Licenciatura em Ciências do Ambiente (Degree)
Universidade de Trás-os-Montes e Alto Douro Centro de Investigação e de Tecnologias Agro-Ambientais e Biologicas, Portugal

Event organisation

Event name
Type of event (Role) 		Institution / Organization
2014/08/31 - 2014/09/04 Part of organization team of 62nd GA Meeting by Department of Biology, UMINHO, Braga (2014)
Conference (Member of the Organising Committee)

Event participation

Activity description
Type of event 		Event name
Institution / Organization
2018/09/11 - 2018/09/20 FEBS Practical Course 2018 - Microspectroscopy: Functional Imaging of Biological Systems 11-20 September 2018 I Wageningen, Netherlands
Workshop
 FEBS Practical Course 2018 - Microspectroscopy: Functional Imaging of Biological Systems
Wageningen Plant Research, Netherlands
2018/03/05 - 2018/03/07 Training program VIII Hands-on Course in Sample Preparation using Nanoparticles for Proteomics
Workshop
 VIII Hands-on Course in Sample Preparation using Nanoparticles for Proteomics
Universidade NOVA de Lisboa Faculdade de Ciências e Tecnologia, Portugal
2018/02/26 - 2018/02/28 Training program IX Hands-on Course in Ultrafast Sample Treatment for Proteomics
Workshop
 IX Hands-on Course in Ultrafast Sample Treatment for Proteomics
Universidade NOVA de Lisboa Faculdade de Ciências e Tecnologia, Portugal
2017/04/01 - 2017/04/15 Training on advance proteomics; application of 2D Gel Electrophoresis for protein profiling
Other
Instytut Genetyki Roslin Polskiej Akademii Nauk, Poland
2003/08/05 - 2003/11/05 Short term project on fermentation technology at MOHAN GOLDWATER BREWERIES Ltd, India

Ad Hoc journal article review

Journal title (ISSN) Publisher
2022/04/04 - Current Agriculture (2077-0472) MDPI (Basel, CH)
2022 - Current Biology (ISSN 2079-7737) MDPI (Basel, CH)
2022 - Current Environmental geochemistry and health Springer Nature (New York , US)
2022 - Current Genes (2073-4425) MDPI (Basel, CH)
2022 - Current Horticulturae (2311-7524) MDPI (Basel, CH)
2022 - Current Life (2075-1729) MDPI
2022 - Current Stresses (2673-7140) MDPI
2022 - Current Toxins (ISSN 2072-6651) MDPI
2021/04/14 - Current Applied Sciences ( ISSN: 2076-3417) MDPI (Basel, CH)
2021/02/02 - Current Agronomy (2073-4395) MDPI (Basel, CH)
2021 - Current Biological Research (ISSN: 0717-6287) Springer Nature (New York, US)
2021 - Current Coatings (2079-6412) MDPI (Basel, CH)
2021 - Current Environmental Sustainability (2523-8922) Springer Nature (New York, US)
2021 - Current Foods (2304-8158) MDPI (Basel, CH)
2021 - Current Forests (1999-4907) MDPI (Basel, CH)
2021 - Current Metabolites (2218-1989) MDPI
2021 - Current Microorganisms (2076-2607) MDPI
2021 - Current Pathogens ((ISSN 2076-0817)) MDPI
2021 - Current Physiology and Molecular Biology of Plants ( ISSN: 0971-5894) Springer Nature (New York, US)
2021 - Current Water (ISSN 2073-4441) MDPI
2020 - Current The International Journal of Molecular Sciences ( 1422-0067) MDPI (Basel, CH)
2020 - Current Land (2073-445X) MDPI (Basel, CH)
2020 - Current Molecules ((ISSN 1420-3049, COD) MDPI
2020 - Current Plants (ISSN 2223-7747) MDPI
2020 - Current Sustainability (ISSN 2071-1050) MDPI
2019 - Current Nutrients ((ISSN 2072-6643)) MDPI

Evaluation committee

Activity description
Role 		Institution / Organization Funding entity
2022/08/22 - Current Invited by National Research and Development Agency (ANID), Government of Chille as external reviewer for proposals submitted to 2023 Competition for Initiation Into Research Fondecyt Projects.
Specialist

Interview (newspaper / magazine)

Activity description Newspaper / Forum
2022/01/13 Interviewed by a French news magazine regarding my research of Chitosan application in Vineyards. The interview was published on 13-01-2022 in "Reussir VIGNE" N 292 entitled "Du chitosane sur les vignes pour davantage de polyphénols".

Journal scientific committee

Journal title (ISSN) Publisher
2023/04 - Current Special Issue "Plant Biotechnology: Applications in In Vitro Plant Conservation and Micropropagation" (2311-7524) MDPI
2023/03/01 - Current Topical Advisory Panel Member of Sustainability (2071-1050) MDPI Basel
2024/09/10 - 2025/05/31 Agro-Environmental Nutrient Management Rooted in Nature-Based Solutions: Frontiers (2296-665X) Frontiers in Environmental Science
2022/10/20 - 2023/10/05 Sustainability, Special Issue "Exploring Wild Natural Diversity to Pick Out New Green Proxy Materials to Revamp Sustainable Agriculture" (ISSN 2071-1050) MDPI
2022/02/22 - 2023/02/22 Frontiers In Genomeediting: Genes at Work: Strategies for selection and development of Industrial Strains of Microbes and Plants Frontiers in genome editing

Mentoring / Tutoring

Topic Student name
2014 - 2018 PhD in Molecular mechanism of Agrobactierium recognition and defense activation in recalcitrant plants WEINA HOU

Scientific expedition

Activity description Institution / Organization
2024/09/01 - 2027/08/01 the project titled "Eco-Friendly Solutions for Heavy Metal Stabilization in Soil Using Biochar and Nanofertilizers for Barley Resilience: A Case Study for Achieving Sustainable Development Goals (SDGs) in Syunik Province" , I have agreed to be a Guest Professor for the scientific group. During the three-year project implementation, I will agree to stay at least 21 days at Faculty of Biology Yerevan State University Republic of Armenia to conduct activities related to the project, such as teaching.
Distinctions

Award

2020 Finalist work for the ENOFORUM 2020 Award
2009 Best Poster Presentation