Identification
Personal identification
- Full name
- Paulo Caldas
Citation names
- Caldas, Paulo
Author identifiers
- Ciência ID
- 0F15-BC17-2F60
- ORCID iD
- 0000-0001-6730-4461
Email addresses
- p.caldas@fct.unl.pt (Professional)
Telephones
- Mobile phone
-
- 928123332 (Personal)
Websites
- https://www.linkedin.com/in/paulo-caldas-25982a78/ (Professional)
Knowledge fields
- Exact Sciences - Computer and Information Sciences - Bioinformatics
- Natural sciences - Biological Sciences - Biology
- Natural sciences - Biological Sciences - Molecular Biology
- Natural sciences - Biological Sciences - Biochemistry
- Natural sciences - Biological Sciences - Biophysics
- Medical and Health Sciences - Basic Medicine - Human Genetics
Languages
Language | Speaking | Reading | Writing | Listening | Peer-review |
---|---|---|---|---|---|
English | Advanced (C1) | Advanced (C1) | Advanced (C1) | Advanced (C1) | Advanced (C1) |
Education
Degree | Classification | |
---|---|---|
2015/09/15 - 2020/09/15
Concluded
|
Molecular Biology, Biochemistry and Biophysics (Doctor of Philosophy)
Institute of Science and Technology Austria, Austria
"Organization and dynamics of cytoskeletal networks of FtsZ and its crosslinkers" (THESIS/DISSERTATION)
|
|
2012/09/01 - 2014/09/01
Concluded
|
Bioquímica (Mestrado)
Major in Biomédica
Universidade de Lisboa Faculdade de Ciências, Portugal
"Modulation of calcitonin amyloid formation by lipid membranes and extracellular matrix: implications for the mechanism of
cytotoxicity of amyloidogenic polypeptides" (THESIS/DISSERTATION)
|
18/20 |
2009/09/01 - 2012/06/01
Concluded
|
Bioquímica (Licenciatura)
Universidade de Lisboa Faculdade de Ciências, Portugal
|
17/20 |
Affiliation
Science
Category Host institution |
Employer | |
---|---|---|
2025/02/01 - Current | Researcher (Research) | Associação do Instituto Superior Técnico para a Investigação e Desenvolvimento, Portugal |
Universidade de Lisboa Instituto de Bioengenharia e Biociências, Portugal | ||
2021/01/01 - Current | Postdoc (Research) | Universidade Nova de Lisboa Faculdade de Ciências e Tecnologia, Portugal |
Universidade Nova de Lisboa Faculdade de Ciências e Tecnologia, Portugal | ||
2015/09/15 - 2020/09/15 | Researcher (Research) | Institute of Science and Technology Austria, Austria |
2014/10/01 - 2015/06/01 | Researcher (Research) | Fundação para a Ciência e a Tecnologia, Portugal |
Universidade de Lisboa Instituto Superior Técnico, Portugal |
Others
Category Host institution |
Employer | |
---|---|---|
2020/09/01 - 2020/12/01 | Product Manager Intern | Roche Austria GmbH, Austria |
Projects
Grant
Designation | Funders | |
---|---|---|
2022/06/01 - 2024/06/30 | Dissecting FOXO-mediated Transcription Noise to Stall Cellular Dysfunction in Ageing
Co-Principal Investigator (Co-PI)
Universidade Nova de Lisboa Faculdade de Ciências e Tecnologia, Portugal
|
European Commission Marie Sklodowska-Curie Actions
Ongoing
|
2021/01/01 - 2022/03/31 | Inibição da heterogeneidade intra-tumoral como uma estratégia promissora no tratamento do cancro
Post-doc
Universidade Nova de Lisboa Faculdade de Ciências e Tecnologia, Portugal
|
Fundação para a Ciência e a Tecnologia
Concluded
|
2016/09/15 - 2020/09/15 | Self-Organization of the Bacterial Cell
PhD Student Fellow
Institute of Science and Technology Austria, Austria
|
European Research Council
Concluded
|
2017/09/01 - 2019/09/01 | Rebuilding the Bacterial Cell Division Machinery
PhD Student Fellow
Institute of Science and Technology Austria, Austria
|
Boehringer Ingelheim Fonds
Concluded
|
Outputs
Publications
Book chapter |
|
Conference poster |
|
Journal article |
|
Preprint |
|
Thesis / Dissertation |
|
Other
Other output |
|
Activities
Supervision
Thesis Title Role |
Degree Subject (Type) Institution / Organization |
|
---|---|---|
2023/09/01 - 2024/10/01 | Deciphering FOXO1-Mediated Gene Regulation Through Multi-Omics Integration
Co-supervisor
|
Computational Biology and Bioinformatics (Master)
Unidade de Ciências Biomoleculares Aplicadas, Portugal
|
2023/09/01 - 2024/10/01 | Assessing the Impact of XIST and X Chromosome Dysregulation in Systemic Lupus Erythematosus
Co-supervisor
|
Computational Biology and Bioinformatics (Master)
Unidade de Ciências Biomoleculares Aplicadas, Portugal
|
2023/02/01 - 2023/09/30 | Explore how FOXO1 dysregulation promotes functional decline of the vascular endothelium
Supervisor
|
Ciências de Engenharia - Engenharia Biológica (Master)
Universidade de Lisboa Instituto Superior Técnico, Portugal
|
2021/10/01 - 2022/09/30 | Assessing the Prevalence of Transcription Readthrough in Healthy Tissues Through Computational Approaches
Co-supervisor
|
Genética Molecular e Biomedicina (Master)
Universidade Nova de Lisboa Faculdade de Ciências e Tecnologia, Portugal
|
2022/02/01 - 2022/03/01 | Dissecting transcription readthrough in ageing tissues through computational approaches
Co-supervisor
|
Biologia Celular e Molecular (Degree)
Universidade Nova de Lisboa Faculdade de Ciências e Tecnologia, Portugal
|
2022/02/01 - 2022/03/01 | Explore the association between splicing defects and transcription readthrough in human healthy tissues
Co-supervisor
|
Bioquímica (Degree)
Universidade Nova de Lisboa Faculdade de Ciências e Tecnologia, Portugal
|
2020/01/01 - 2020/07/31 | The effect of ZapE on FtsZ filament organization and dynamics
Co-supervisor
|
Medical and Pharmaceutical Biotechnology (Master)
IMC Fachhochschule Krems, Austria
Institute of Science and Technology Austria, Austria |
2018/07/01 - 2018/09/30 | Modulation of the bacterial Z-ring by the crosslinker protein ZapC
Co-supervisor
|
Biotechnology (Scientific initiation)
Institute of Science and Technology Austria, Austria
|
Event participation
Activity description Type of event |
Event name Institution / Organization |
|
---|---|---|
2024/03/07 - 2024/03/08 | Conference: Applied Bioinformatics in Life Sciences - Aimed to address the evolving landscape of bioinformatics in medical
and basic research, showcasing recent scientific findings and fostering collaboration among participants.
https://www.vibconferences.be/events/applied-bioinformatics-in-life-sciences-5th-edition
Conference
|
Applied Bioinformatics in Life Sciences |
2024/02/27 - 2024/03/01 | EMBL Course: Integrative analysis of multi-omics data - Hands-on training in the mathematical and practical skills needed
to analyze multi-omics data through integrated statistical analysis and computational modeling techniques. https://www.embl.org/about/info/course-and-conference-office/events/mmd24-01/
Workshop
|
Integrative analysis of multi-omics data
EMBL Heidelberg Genome Biology, Germany
|
2023/06/19 - 2023/06/22 | EMBO Workshop On X-chromosome inactivation: New insights on its 60th anniversary - This EMBO Workshop will bring together
a diverse range of experts across the world working on different aspects of the X-inactivation process to share their ongoing
and unpublished work, contributing to building a more integrated overview of this epigenetic and developmental phenomenon,
60+ years after the seminal paper by geneticist Mary Lyon in 1961 proposing the X-inactivation hypothesis.
Conference
|
EMBO Workshop On X-chromosome inactivation
Gesellschaft zur Förderung der Lebenswissenschaften Heidelberg GmbH, Germany
|
2023/04/27 - 2023/04/27 | Workshop on Decoding the genome with deep learning - In this course, we will provide an overview of how deep learning can
be used to learn the regulatory code of the genome, discuss specific models and applications, and get hands-on experience
implementing them.
Workshop
|
Decoding the Genome with Deep Learning
Instituto de Engenharia de Sistemas e Computadores Investigação e Desenvolvimento em Lisboa, Portugal
|
2023/01/26 - 2023/01/27 | RNA in Disease - IX PT RNA Meeting - A broad event covering several aspects of RNA biology, from RNA structure and function
to RNA-associated dysfunctions and implications in human health.
Conference
|
RNA in Disease - IX PT RNA Meeting
Universidade de Lisboa Instituto de Medicina Molecular João Lobo Antunes, Portugal
|
2022/07/22 - 2022/07/22 | RiboMed Satellite Conference on RNA in Disease -
several talks by distinguished researchers on RNA in biomedical contexts. Session was extended to a poster session and two
short talks selected from submitted abstracts.
Conference
|
RiboMed Satellite Conference on RNA in Disease
Universidade de Lisboa Instituto de Medicina Molecular João Lobo Antunes, Portugal
|
2021/07/05 - 2021/07/10 | RiboMed Summer School on Single-cell RNA-seq and spatial transcriptomics - A practical hands-on course that required basic
experience in bioinformatics.
Workshop
|
RiboMed Summer School on Single-cell RNA-seq and spatial transcriptomics
Universidade de Lisboa Instituto de Medicina Molecular João Lobo Antunes, Portugal
|
2020/01/06 - 2020/01/09 | Quantitative BioImaging Conference - International and Interdisciplinary conference on the Analysis of Bioimaging data - https://www.quantitativebioimaging.com/qbi2020/
Conference
|
Quantitative BioImaging Conference (QBI 2020)
University of Oxford, United Kingdom
University of Oxford Mathematical Institute, United Kingdom |
2019/04/07 - 2019/04/11 | Cell Biology of Prokaryotes Conference - International conference focused on the molecular mechanisms that underlie the spatiotemporal
organization of fundamental cellular processes in prokaryotes - https://www.eventbrite.de/e/cell-biology-of-prokaryotes-registration-49977814990
Conference
|
Cell Biology of Prokaryotes Conference
Transregional Collaborative Research Center TRR 174, Germany
|
2018/08/12 - 2018/08/17 | Gordon Research Conference on Plant and Microbial Cytoskeleton - Quantitative approaches to investigate the underlying molecular
mechanisms controlling the organization, dynamics and function of the cytoskeleton in model plant, fungal and bacterial cell
systems - https://www.grc.org/plant-and-microbial-cytoskeleton-conference/2018/
Conference
|
Gordon Research Conference - Plant and Microbial Cytoskeleton
Gordon Research Conferences, United States
|
Association member
Society Organization name | Role | |
---|---|---|
2017/03/01 - 2018/03/01 | Graduate Student Association (GSA) | Graduate Student Representative |
Course / Discipline taught
Academic session | Degree Subject (Type) | Institution / Organization | |
---|---|---|---|
2019/09/01 - 2019/10/31 | Introduction to Programming with Python | IST Austria Graduate School (Doktor (PhD)) | Institute of Science and Technology Austria, Austria |
2019/01/01 - 2019/03/31 | Biology Core Course | IST Austria Graduate School (Doktor (PhD)) | Institute of Science and Technology Austria, Austria |
2018/01/01 - 2018/03/01 | Biology Core Course | IST Austria Graduate School (Doktor (PhD)) | Institute of Science and Technology Austria, Austria |
Distinctions
Award
2025 | Individual Call to Scientific Employment Stimulus - Junior researcher
Fundação para a Ciência e a Tecnologia, Portugal
|
2022 | Marie Sklodowska-Curie Postdoctoral Fellowship
Universidade Nova de Lisboa Faculdade de Ciências e Tecnologia, Portugal
|
2020 | Best Poster Prize at Cell Biology of Prokaryotes Conference
Ludwig-Maximilians-Universität München Fakultät für Biologie, Germany
|
2017 | Boehringer Ingelheim Fonds (BIF) PhD Fellowship
Boehringer Ingelheim Fonds, Germany
|
2014 | Best Poster Prize at the XVIII Congress of the Portuguese Biochemical Society
Sociedade Portuguesa de Bioquímica, Portugal
|
Other distinction
2021 | Research Fellowship
Fundação para a Ciência e a Tecnologia, Portugal
|
2020 | Expert Internship Grant - Intersecting Science & Business
Ludwig Boltzmann Gesellschaft, Austria
|
2014 | Research Fellowship
Fundação para a Ciência e a Tecnologia, Portugal
|
2013 | Research Fellowship
Fundação para a Ciência e a Tecnologia, Portugal
|