Journal article |
- Francisco Romero-Ferrero; Francisco J. H. Heras; Dean Rance; Gonzalo G. de Polavieja. "A study of transfer of information
in animal collectives using deep learning tools". Philosophical Transactions of the Royal Society B: Biological Sciences
(2023): https://doi.org/10.1098/rstb.2022.0073.
10.1098/rstb.2022.0073
- Dylan Feldner-Busztin; Panos Firbas Nisantzis; Shelley Jane Edmunds; Gergely Boza; Fernando Racimo; Shyam Gopalakrishnan;
Morten Tønsberg Limborg; et al. "Dealing with dimensionality: the application of machine learning to multi-omics data". Bioinformatics
(2023): https://doi.org/10.1093/bioinformatics/btad021.
10.1093/bioinformatics/btad021
- Francisco J. H. Heras; Francesco P. Battaglia; Francisco Romero-Ferrero; Robert C. Hinz; Gonzalo G. de Polavieja. "Deep attention
networks reveal the rules of collective motion in zebrafish". PLOS Computational Biology 15 9 (2019): e1007354-e1007354.
https://doi.org/10.1371/journal.pcbi.1007354.
10.1371/journal.pcbi.1007354
- Francisco Romero-Ferrero; Mattia G. Bergomi; Robert C. Hinz; Francisco J. H. Heras; Gonzalo G. de Polavieja. "idtracker.ai:
tracking all individuals in small or large collectives of unmarked animals". Nature Methods (2019): https://doi.org/10.1038/s41592-018-0295-5.
10.1038/s41592-018-0295-5
- Angel-Carlos Román; Julián Vicente-Page; Alfonso Pérez-Escudero; Jose M. Carvajal-González; Pedro M. Fernández-Salguero; Gonzalo
G. de Polavieja. "Histone H4 acetylation regulates behavioral inter-individual variability in zebrafish". Genome Biology
19 1 (2018): https://doi.org/10.1186/s13059-018-1428-y.
10.1186/s13059-018-1428-y
- Andres Laan; Gonzalo G. de Polavieja. "Species diversity rises exponentially with the number of available resources in a multi-trait
competition model". Proceedings of the Royal Society B: Biological Sciences 285 1885 (2018): 20181273-20181273. https://doi.org/10.1098/rspb.2018.1273.
10.1098/rspb.2018.1273
- Andres Laan; Marta Iglesias-Julios; Gonzalo G. de Polavieja. "Zebrafish aggression on the sub-second time scale: evidence
for mutual motor coordination and multi-functional attack manoeuvres". Royal Society Open Science 5 8 (2018): 180679-180679.
https://doi.org/10.1098/rsos.180679.
10.1098/rsos.180679
- Alfonso Pérez-Escudero; Gonzalo G. de Polavieja. "Adversity magnifies the importance of social information in decision-making".
Journal of The Royal Society Interface 14 136 (2017): 20170748-20170748. https://doi.org/10.1098/rsif.2017.0748.
10.1098/rsif.2017.0748
- Juusola, M.; Dau, A.; Song, Z.; Solanki, N.; Rien, D.; Jaciuch, D.; Dongre, S.A.; et al. "Microsaccadic sampling of moving
image information provides Drosophila hyperacute vision". eLife 6 (2017): http://www.scopus.com/inward/record.url?eid=2-s2.0-85029423708&partnerID=MN8TOARS.
10.7554/eLife.26117
- Louis, M.; de Polavieja, G.. "Collective Behavior: Social Digging in Drosophila Larvae". Current Biology 27 18 (2017):
R1010-R1012. http://www.scopus.com/inward/record.url?eid=2-s2.0-85029847345&partnerID=MN8TOARS.
10.1016/j.cub.2017.08.023
- Hinz, R.C.; De Polavieja, G.G.. "Ontogeny of collective behavior reveals a simple attraction rule". Proceedings of the
National Academy of Sciences of the United States of America 114 9 (2017): 2295-2300. http://www.scopus.com/inward/record.url?eid=2-s2.0-85014142453&partnerID=MN8TOARS.
10.1073/pnas.1616926114
- Vicente-Page, J.; Pérez-Escudero, A.; de Polavieja, G.G.. "Dynamic choices are most accurate in small groups". Theoretical
Ecology (2017): 1-11. http://www.scopus.com/inward/record.url?eid=2-s2.0-85032709704&partnerID=MN8TOARS.
10.1007/s12080-017-0349-9
- Laan, A.; Gil de Sagredo, R.; de Polavieja, G.G.. "Signatures of optimal control in pairs of schooling zebrafish". Proceedings
of the Royal Society B: Biological Sciences 284 1852 (2017): http://www.scopus.com/inward/record.url?eid=2-s2.0-85017561380&partnerID=MN8TOARS.
10.1098/rspb.2017.0224
- Clément, R.J.G.; Vicente-Page, J.; Mann, R.P.; Ward, A.J.W.; Kurvers, R.H.J.M.; Ramnarine, I.W.; De Polavieja, G.G.; Krause,
J.. "Collective decision making in guppies: A cross-population comparison study in the wild". Behavioral Ecology 28
3 (2017): 919-924. http://www.scopus.com/inward/record.url?eid=2-s2.0-85019932873&partnerID=MN8TOARS.
10.1093/beheco/arx056
- Duteil, M.; Pope, E.C.; Pérez-Escudero, A.; de Polavieja, G.G.; Fürtbauer, I.; Brown, M.R.; King, A.J.. "European sea bass
show behavioural resilience to near-future ocean acidification". Royal Society Open Science 3 11 (2016): http://www.scopus.com/inward/record.url?eid=2-s2.0-84994608296&partnerID=MN8TOARS.
10.1098/rsos.160656
- Brugada-Ramentol, V.; De Polavieja, G.G.; Román, Á.-C.; Olivé, I.; Warren, J.; Hommers, L.. "Toward a molecular profile of
self-representation". Frontiers in Human Neuroscience 10 NOV2016 (2016): http://www.scopus.com/inward/record.url?eid=2-s2.0-84998849923&partnerID=MN8TOARS.
10.3389/fnhum.2016.00602
- Gradari, S.; Pérez-Domper, P.; Butler, R.G.; Martínez-Cué, C.; de Polavieja, G.G.; Trejo, J.L.. "The relationship between
behavior acquisition and persistence abilities: Involvement of adult hippocampal neurogenesis". Hippocampus 26 7 (2016):
857-874. http://www.scopus.com/inward/record.url?eid=2-s2.0-84975058840&partnerID=MN8TOARS.
10.1002/hipo.22568
- Madirolas, G.; de Polavieja, G.G.. "Improving Collective Estimations Using Resistance to Social Influence". PLoS Computational
Biology 11 11 (2015): http://www.scopus.com/inward/record.url?eid=2-s2.0-84949231338&partnerID=MN8TOARS.
10.1371/journal.pcbi.1004594
- Pérez-Escudero, A.; Vicente-Page, J.; Hinz, R.C.; Arganda, S.; De Polavieja, G.G.. "IdTracker: Tracking individuals in a group
by automatic identification of unmarked animals". Nature Methods 11 7 (2014): 743-748. http://www.scopus.com/inward/record.url?eid=2-s2.0-84903521501&partnerID=MN8TOARS.
10.1038/nmeth.2994
- Dell, A.I.; Bender, J.A.; Branson, K.; Couzin, I.D.; de Polavieja, G.G.; Noldus, L.P.J.J.; Pérez-Escudero, A.; et al. "Automated
image-based tracking and its application in ecology". Trends in Ecology and Evolution 29 7 (2014): 417-428. http://www.scopus.com/inward/record.url?eid=2-s2.0-84902660161&partnerID=MN8TOARS.
10.1016/j.tree.2014.05.004
- Rivera-Alba, M.; Peng, H.; De Polavieja, G.G.; Chklovskii, D.B.. "Wiring economy can account for cell body placement across
species and brain areas". Current Biology 24 3 (2014): http://www.scopus.com/inward/record.url?eid=2-s2.0-84893239905&partnerID=MN8TOARS.
10.1016/j.cub.2013.12.012
- Sumbre, G.; de Polavieja, G.G.. "The world according to zebrafish: How neural circuits generate behavior". Frontiers in
Neural Circuits 8 JULY (2014): http://www.scopus.com/inward/record.url?eid=2-s2.0-84905190193&partnerID=MN8TOARS.
10.3389/fncir.2014.00091
- Pietri, T.; Roman, A.-C.; Guyon, N.; Romano, S.A.; Washbourne, P.; Moens, C.B.; de Polavieja, G.G.; Sumbre, G.. "The first
mecp2-null zebrafish model shows altered motor behaviors". Frontiers in Neural Circuits JUL (2013): http://www.scopus.com/inward/record.url?eid=2-s2.0-84880589894&partnerID=MN8TOARS.
10.3389/fncir.2013.00118
- Sorribes, A.; Porsteinsson, H.; Arnardóttir, H.; Jóhannesdóttir, I.P.; Sigurgeirsson, B.; de Polavieja, G.G.; Karlsson, K.Æ..
"The ontogeny of sleep-wake cycles in zebrafish: A comparison to humans". Frontiers in Neural Circuits 7 NOV (2013):
http://www.scopus.com/inward/record.url?eid=2-s2.0-84888165618&partnerID=MN8TOARS.
10.3389/fncir.2013.00178
- Pérez-Escudero, A.; Miller, N.; Hartnett, A.T.; Garnier, S.; Couzin, I.D.; De Polavieja, G.G.. "Estimation models describe
well collective decisions among three options". Proceedings of the National Academy of Sciences of the United States of
America 110 37 (2013): http://www.scopus.com/inward/record.url?eid=2-s2.0-84883801684&partnerID=MN8TOARS.
10.1073/pnas.1309867110
- Arganda, S.; Pérez-Escudero, A.; De Polavieja, G.G.. "A common rule for decision making in animal collectives across species".
Proceedings of the National Academy of Sciences of the United States of America 109 50 (2012): 20508-20513. http://www.scopus.com/inward/record.url?eid=2-s2.0-84870938091&partnerID=MN8TOARS.
10.1073/pnas.1210664109
- Rivera-Alba, M.; Vitaladevuni, S.N.; Mischenko, Y.; Lu, Z.; Takemura, S.-Y.; Scheffer, L.; Meinertzhagen, I.A.; Chklovskii,
D.B.; De Polavieja, G.G.. "Wiring economy and volume exclusion determine neuronal placement in the Drosophila brain". Current
Biology 21 23 (2011): 2000-2005. http://www.scopus.com/inward/record.url?eid=2-s2.0-82955237289&partnerID=MN8TOARS.
10.1016/j.cub.2011.10.022
- Sorribes, A.; Armendariz, B.G.; Lopez-Pigozzi, D.; Murga, C.; de Polavieja, G.G.. "The origin of behavioral bursts in decision-making
circuitry". PLoS Computational Biology 7 6 (2011): http://www.scopus.com/inward/record.url?eid=2-s2.0-79959896362&partnerID=MN8TOARS.
10.1371/journal.pcbi.1002075
- Pérez-Escudero, A.; de Polavieja, G.G.. "Collective animal behavior from bayesian estimation and probability matching". PLoS
Computational Biology 7 11 (2011): http://www.scopus.com/inward/record.url?eid=2-s2.0-84859245496&partnerID=MN8TOARS.
10.1371/journal.pcbi.1002282
- Prieto-Godino, L.L.; de Polavieja, G.G.. "Brain activity at 70-80 Hz changes during olfactory stimulation protocols in Drosophila".
PLoS ONE 5 9 (2010): 1-6. http://www.scopus.com/inward/record.url?eid=2-s2.0-77958502273&partnerID=MN8TOARS.
10.1371/journal.pone.0012867
- Zheng, L.; Nikolaev, A.; Wardill, T.J.; O'Kane, C.J.; de Polavieja, G.G.; Juusola, M.. "Network adaptation improves temporal
representation of naturalistic stimuli in Drosophila eye: I dynamics". PLoS ONE 4 1 (2009): http://www.scopus.com/inward/record.url?eid=2-s2.0-77149133701&partnerID=MN8TOARS.
10.1371/journal.pone.0004307
- Nikolaev, A.; Zheng, L.; Wardill, T.J.; O'Kane, C.J.; de Polavieja, G.G.; Juusola, M.. "Network adaptation improves temporal
representation of naturalistic stimuli in Drosophila eye: II mechanisms.". PloS one 4 1 (2009): http://www.scopus.com/inward/record.url?eid=2-s2.0-63049100582&partnerID=MN8TOARS.
- Pérez-Escudero, A.; Rivera-Alba, M.; De Polavieja, G.G.. "Structure of deviations from optimality in biological systems".
Proceedings of the National Academy of Sciences of the United States of America 106 48 (2009): 20544-20549. http://www.scopus.com/inward/record.url?eid=2-s2.0-73949153189&partnerID=MN8TOARS.
10.1073/pnas.0905336106
- Arganda, S.; Guantes, R.; De Polavieja, G.G.. "Sodium pumps adapt spike bursting to stimulus statistics". Nature Neuroscience
10 11 (2007): 1467-1473. http://www.scopus.com/inward/record.url?eid=2-s2.0-35548999297&partnerID=MN8TOARS.
10.1038/nn1982
- Campos, D.; Aguirre, C.; Serrano, E.; de Borja Rodríguez, F.; de Polavieja, G.G.; Varona, P.. "Temporal structure in the bursting
activity of the leech heartbeat CPG neurons". Neurocomputing 70 10-12 (2007): 1792-1796. http://www.scopus.com/inward/record.url?eid=2-s2.0-34247511978&partnerID=MN8TOARS.
10.1016/j.neucom.2006.10.118
- Pérez-Escudero, A.; De Polavieja, G.G.. "Optimally wired subnetwork determines neuroanatomy of Caenorhabditis elegans". Proceedings
of the National Academy of Sciences of the United States of America 104 43 (2007): 17180-17185. http://www.scopus.com/inward/record.url?eid=2-s2.0-36749068938&partnerID=MN8TOARS.
10.1073/pnas.0703183104
- Ramaswamy, S.; Baroni, F.; Varona, P.; de Polavieja, G.G.. "Time-scales in the interplay between calcium and voltage dynamics".
Neurocomputing 70 10-12 (2007): 1949-1953. http://www.scopus.com/inward/record.url?eid=2-s2.0-34247534080&partnerID=MN8TOARS.
10.1016/j.neucom.2006.10.122
- Juusola, M.; Robinson, H.P.C.; De Polavieja, G.G.. "Coding with spike shapes and graded potentials in cortical networks".
BioEssays 29 2 (2007): 178-187. http://www.scopus.com/inward/record.url?eid=2-s2.0-33847405318&partnerID=MN8TOARS.
10.1002/bies.20532
- Zheng, L.; De Polavieja, G.G.; Wolfram, V.; Asyali, M.H.; Hardie, R.C.; Juusola, M.. "Feedback network controls photoreceptor
output at the layer of first visual synapses in Drosophila". Journal of General Physiology 127 5 (2006): 495-510. http://www.scopus.com/inward/record.url?eid=2-s2.0-33646162888&partnerID=MN8TOARS.
10.1085/jgp.200509470
- Martín-Peña, A.; Acebes, A.; Rodríguez, J.-R.; Sorribes, A.; De Polavieja, G.G.; Fernández-Fúnez, P.; Ferrús, A.. "Age-independent
synaptogenesis by phosphoinositide 3 kinase". Journal of Neuroscience 26 40 (2006): 10199-10208. http://www.scopus.com/inward/record.url?eid=2-s2.0-33749521099&partnerID=MN8TOARS.
10.1523/JNEUROSCI.1223-06.2006
- De Polavieja, G.G.. "Neuronal algorithms that detect the temporal order of events". Neural Computation 18 9 (2006):
2102-2121. http://www.scopus.com/inward/record.url?eid=2-s2.0-33748329392&partnerID=MN8TOARS.
10.1162/neco.2006.18.9.2102
- Guantes, R.; De Polavieja, G.G.. "Variability in noise-driven integrator neurons". Physical Review E - Statistical, Nonlinear,
and Soft Matter Physics 71 1 (2005): http://www.scopus.com/inward/record.url?eid=2-s2.0-37649028690&partnerID=MN8TOARS.
10.1103/PhysRevE.71.011911
- De Polavieja, G.G.; Harsch, A.; Kleppe, I.; Robinson, H.P.C.; Juusola, M.. "Stimulus history reliably shapes action potential
waveforms of cortical neurons". Journal of Neuroscience 25 23 (2005): 5657-5665. http://www.scopus.com/inward/record.url?eid=2-s2.0-20444405647&partnerID=MN8TOARS.
10.1523/JNEUROSCI.0242-05.2005
- de Polavieja, G.G.. "Reliable biological communication with realistic constraints". Physical Review E - Statistical Physics,
Plasmas, Fluids, and Related Interdisciplinary Topics 70 6 (2004): http://www.scopus.com/inward/record.url?eid=2-s2.0-42749102564&partnerID=MN8TOARS.
10.1103/PhysRevE.70.061910
- Nabatiyan, A.; Poulet, J.F.A.; De Polavieja, G.G.; Hedwig, B.. "Temporal pattern recognition based on instantaneous spike
rate coding in a simple auditory system". Journal of Neurophysiology 90 4 (2003): 2484-2493. http://www.scopus.com/inward/record.url?eid=2-s2.0-0142122291&partnerID=MN8TOARS.
10.1152/jn.00259.2003
- De Polavieja, G.G.. "Errors drive the evolution of biological signalling to costly codes". Journal of Theoretical Biology
214 4 (2002): 657-664. http://www.scopus.com/inward/record.url?eid=2-s2.0-0036349957&partnerID=MN8TOARS.
10.1006/jtbi.2001.2498
- Poyatos, J.F.; De Polavieja, G.G.. "Controlling quantum transport by state synthesis in ion traps". Physical Review Letters
83 15 (1999): 3166-3169. http://www.scopus.com/inward/record.url?eid=2-s2.0-0041597068&partnerID=MN8TOARS.
10.1103/PhysRevLett.83.3166
- García De Polavieja, G.; Sjöqvist, E.. "Extending the quantal adiabatic theorem: Geometry of noncyclic motion". American
Journal of Physics 66 5 (1998): 431-438. http://www.scopus.com/inward/record.url?eid=2-s2.0-0347131238&partnerID=MN8TOARS.
10.1119/1.18799
- de Polavieja, G.G.. "Quantum-state sensitivity to initial conditions". Physical Review A - Atomic, Molecular, and Optical
Physics 57 5 (1998): 3184-3187. http://www.scopus.com/inward/record.url?eid=2-s2.0-4243622266&partnerID=MN8TOARS.
10.1103/PhysRevA.57.3184
- García De Polavieja, G.. "Geometric phase in the causal quantum theories". Physics Letters, Section A: General, Atomic
and Solid State Physics 236 4 (1997): 296-300. http://www.scopus.com/inward/record.url?eid=2-s2.0-0040092159&partnerID=MN8TOARS.
10.1016/S0375-9601(97)00724-X
- García De Polavieja, G.. "Galilean invariant structure of geometric phase". Physics Letters, Section A: General, Atomic
and Solid State Physics 232 1-2 (1997): 1-3. http://www.scopus.com/inward/record.url?eid=2-s2.0-0040569024&partnerID=MN8TOARS.
- de Polavieja, G.G.; Child, M.S.. "Quantum instability of the flux lines in the coherent state representation". Physical
Review E - Statistical Physics, Plasmas, Fluids, and Related Interdisciplinary Topics 55 2 (1997): 1451-1456. http://www.scopus.com/inward/record.url?eid=2-s2.0-0009079591&partnerID=MN8TOARS.
10.1103/PhysRevE.55.1451
- Garcia De Polavieja, G.. "Nonstatistical quantum-classical correspondence in phase space". Foundations of Physics Letters
9 5 (1996): 411-424. http://www.scopus.com/inward/record.url?eid=2-s2.0-0030519736&partnerID=MN8TOARS.
- De Polavieja, G.G.. "A causal quantum theory in phase space". Physics Letters, Section A: General, Atomic and Solid State
Physics 220 6 (1996): 303-314. http://www.scopus.com/inward/record.url?eid=2-s2.0-4243352024&partnerID=MN8TOARS.
10.1016/0375-9601(96)00523-3
- De Polavieja, G.G.; Borondo, F.; Benito, R.M.. "Quantum phase-space densities for a quartic oscillator". International
Journal of Quantum Chemistry 51 6 (1994): 555-567. http://www.scopus.com/inward/record.url?eid=2-s2.0-84987144700&partnerID=MN8TOARS.
10.1002/qua.560510620
- De Polavieja, G.G.; Borondo, F.; Benito, R.M.. "Scars in groups of eigenstates in a classically chaotic system". Physical
Review Letters 73 12 (1994): 1613-1616. http://www.scopus.com/inward/record.url?eid=2-s2.0-2542594164&partnerID=MN8TOARS.
10.1103/PhysRevLett.73.1613
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