???global.info.a_carregar???
Identification

Personal identification

Full name
Ricardo Jorge Pinto Araujo

Citation names

  • Araujo, Ricardo

Author identifiers

Ciência ID
151A-009C-FA30
ORCID iD
0000-0001-7382-4834
Google Scholar ID
https://scholar.google.com/citations?user=lORYZz0AAAAJ&hl=en
Scopus Author Id
35588292400

Knowledge fields

  • Natural sciences - Biological Sciences - Microbiology
  • Exact Sciences - Computer and Information Sciences - Bioinformatics
  • Natural sciences - Biological Sciences - Mycology
  • Natural sciences - Biological Sciences - Molecular Biology
  • Medical and Health Sciences - Medical Biotechnology
  • Agrarian Sciences - Agrarian and Food Biotechnology
  • Engineering and Technology - Environmental Biotechnology - Diagnostic Biotechnologies in Environmental Management

Languages

Language Speaking Reading Writing Listening Peer-review
English Advanced (C1) Advanced (C1) Advanced (C1) Advanced (C1)
French Beginner (A1) Intermediate (B1) Beginner (A1) Beginner (A1)
Dutch Beginner (A1) Beginner (A1) Beginner (A1) Beginner (A1)
Spanish; Castilian Intermediate (B1) Intermediate (B1) Beginner (A1) Intermediate (B1)
Education
Degree Classification
2003 - 2007
Concluded
 Biologia Humana (Doutoramento)
Universidade do Porto, Portugal
 Aprovado por unanimidade
1997 - 2001
Concluded
 Biology (Licenciatura)
Universidade do Porto, Portugal
 16
Affiliation

Science

Category
Host institution 		Employer
2020/05 - Current Auxiliary Researcher (Research) Universidade do Porto Instituto de Investigação e Inovação em Saúde, Portugal

Teaching in Higher Education

Category
Host institution 		Employer
2019/06 - 2019/12 Assistant Professor (University Teacher) Flinders University, Australia

Others

Category
Host institution 		Employer
2019/01/01 - 2020/06/30 Postdoctoral Fellow Instituto Nacional de Engenharia Biomédica, Portugal
2017/10/01 - 2018/12/01 Laboratorial Manager and Training of Staff and Students. Flinders University, Australia
2016/08/01 - 2017/09/01 Researcher, next generation sequencing applied to soil and plant samples Flinders University, Australia
2016/01/01 - 2016/07/01 Researcher, next generation sequencing applied to endophytes and plants Flinders University, Australia
2008/10/01 - 2013/09/30 Investigador (Ciência 2007) Universidade do Porto Instituto de Patologia e Imunologia Molecular, Portugal
2007 - 2008 Estudante de Pós-doutoramento Universidade do Porto Instituto de Patologia e Imunologia Molecular, Portugal
Projects

Grant

Designation Funders
2020 - 2022 Maternal mycobiome dysbiosis and its influence on the mycobiome of the child
ESCMID Research Grant 2020
Researcher
Universidade do Porto Instituto de Investigação e Inovação em Saúde, Portugal
Ongoing
2019 - 2020 MicroMOB: The microbiome mobility pathway in chronic kidney disease and its role in infection and systemic inflammation
PTDC/MEC-MCI/29777/2017
Post-doc Fellow
Fundação para a Ciência e a Tecnologia, Portugal
Ongoing

Contract

Designation Funders
2020/07/01 - 2026/06/30 MY-Kidney: A personalized approach for understanding chronic kidney disease patient profile, microbiome, inflammation and their interactions
CEECIND/01070/2018
Principal investigator
Universidade do Porto Instituto de Investigação e Inovação em Saúde, Portugal
Ongoing
2022 - 2024 INCLUDE: Impact of bronchiectasis treatments on lung and blood microbiomes
EXPL/MEC-RES/1579/2021
Researcher
Universidade do Porto Instituto de Saúde Pública, Portugal
 Fundação para a Ciência e a Tecnologia
Ongoing
2021 - 2023 PRIMING: Impact of maternal obesity on early-life microbiota-induced immune system priming
Biocodex
Researcher
Universidade do Porto Instituto de Investigação e Inovação em Saúde, Portugal
 Biocodex SA
Ongoing
2019 - 2020 Testing inoculants for plant growth promotion in glasshouse trials
OMNIA2019
Researcher
OMNIA Inc., Australia
Ongoing
2014 - 2016 Origin and diversity of the oral mycobiome in newbornes: influence of nutrition
Milupa2014
Researcher
Milupa Comercial SA, Portugal
2011 - 2013 Characterization of voriconazole susceptibility in relevant clinical molds
Pfizer2011
Principal investigator
Pfizer Inc.
Concluded
2011 - 2012 Role of oral microorganisms in Peritoneal Dialysis-related infections
Projectos pluridisciplinares para iniciação à investigação edition 2011
Researcher
Universidade do Porto, Portugal
Concluded
2010 - 2011 Phylogeography and population structure of the powdery mildew fungus, Erysiphe necator, from diverse Vitis vinifera cultivars grown in Portugal
Projectos pluridisciplinares para iniciação à investigação edition 2010
Researcher
Universidade do Porto, Portugal
Concluded
2010 - 2011 Immunological Markers of Allergic Bronchopulmonary Mycosis (ABPM) in patients with Asthma and Cystic Fibrosis
Projectos pluridisciplinares para iniciação à investigação edition 2010
Researcher
Universidade do Porto, Portugal
Concluded
2009 - 2011 Colonization, inflammation and infection on Portuguese cystic fibrosis patients
35-9924-S/2009
Principal investigator
Fundação Calouste Gulbenkian, Portugal
Concluded
2009 - 2010 Modelling and managing fungal colonization and inflammatory progression on cystic fibrosis patients
Projectos pluridisciplinares para iniciação à investigaçã" edition 2009
Principal investigator
Universidade do Porto, Portugal
2004 - 2007 Invasive fungal infections in immunocompromised patients: host susceptibility to the fungus versus fungal resistance to drugs
POCTI/SAUESP/61080/2004
Research Fellow
Fundação para a Ciência e a Tecnologia, Portugal
Concluded
2003 - 2005 The role of hospital air and water on the transmission of nosocomial Aspergillus infections
60901/2003
Researcher
Fundação Calouste Gulbenkian, Portugal
Concluded
Outputs

Publications

Book
  1. Araujo, Ricardo. Endophytes: Biology and Biotechnology. 2017.
    10.1007/978-3-319-66541-2
  2. Sampaio-Maia, B.; Simões-Silva, L.; Pestana, M.; Araujo, R.; Soares-Silva, I.J.. The Role of the Gut Microbiome on Chronic Kidney Disease. 2016.
    10.1016/bs.aambs.2016.06.002
  3. Sampaio-Maia, B.; Caldas, I.M.; Pereira, M.L.; Pérez-Mongiovi, D.; Araujo, R.. The Oral Microbiome in Health and Its Implication in Oral and Systemic Diseases. 2016.
    10.1016/bs.aambs.2016.08.002
  4. Combating Fungal Infections. 2010.
    10.1007/978-3-642-12173-9
Book chapter
  1. Ana Merino-Ribas; Carolina F.F.A. Costa; Maria Azevedo; Inês Alencastre; Manuel Pestana; Ricardo Araujo; Benedita Sampaio-Maia. "The gut microbiome in chronic kidney disease". 2022.
    10.1016/b978-0-323-91313-3.00012-x
  2. Ricardo Araujo; Onuma Kaewkla; Christopher M.M. Franco. "Endophytic Actinobacteria: Beneficial Partners for Sustainable Agriculture". 2017.
    10.1007/978-3-319-66541-2_8
  3. Araujo, Ricardo. "Applications of DNA-Based Methods in Food Forensics". 2016.
    10.1142/9781786340788_0020
  4. Araujo, Ricardo. "Fungal Air Quality in Medical Protected Environments". 2010.
    10.5772/9766
  5. Araujo, Ricardo. "Antifungal Resistance: Cellular and Molecular Mechanisms". 2010.
    10.1007/978-3-642-12173-9_7
  6. Araujo, Ricardo. "Mould Infections: A Global Threat to Immunocompromised Patients". 2010.
    10.1007/978-3-642-12173-9_1
Journal article
  1. Nassima Didouh; Medjahdi Khadidja; Carla Campos; Benedita Sampaio-Maia; Moussa Boudjemaa Boumediene; Ricardo Araujo. "Assessment of biofilm, enzyme production and antibiotic susceptibility of bacteria from milk pre- and post-pasteurization pipelines in Algeria". International Journal of Food Microbiology (2023): http://dx.doi.org/10.1016/j.ijfoodmicro.2023.110389.
    10.1016/j.ijfoodmicro.2023.110389
  2. Laura Judith Marcos-Zambrano; Víctor Manuel López-Molina; Burcu Bakir-Gungor; Marcus Frohme; Kanita Karaduzovic-Hadziabdic; Thomas Klammsteiner; Eliana Ibrahimi; et al. "A toolbox of machine learning software to support microbiome analysis". Frontiers in Microbiology (2023): http://dx.doi.org/10.3389/fmicb.2023.1250806.
    10.3389/fmicb.2023.1250806
  3. Ricardo Araujo; Ana Merino Ribas; Susana Sampaio; Nádia Silva; Joana Campos; Manuel Pestana; Benedita Sampaio Maia. "The stability of the gut, oral, and circulating microbiomes in living kidney donors: A 2 years prospective study". Clinical Transplantation (2023): https://doi.org/10.1111/ctr.15084.
    10.1111/ctr.15084
  4. Ricardo Araujo; Ana Merino-Ribas; Luciano Pereira; Joana Campos; Nádia Silva; Inês Soares Alencastre; Manuel Pestana; Benedita Sampaio-Maia. "The urogenital microbiome in chronic kidney disease patients on peritoneal dialysis". Nefrología (2023): https://doi.org/10.1016/j.nefro.2023.08.008.
    10.1016/j.nefro.2023.08.008
  5. Andréia Spanamberg; Ana Paula Ravazzolo; Ricardo Araujo; Natália Tomazi; Beatriz Fuentes; Laerte Ferreiro. "Molecular detection and species identification of dermatophytes by SYBR-Green real-time PCR in-house methodology using hair samples obtained from dogs and cats". Medical Mycology (2023): http://dx.doi.org/10.1093/mmy/myad047.
    10.1093/mmy/myad047
  6. Andréia Spanamberg; Ana Paula Ravazzolo; Ricardo Araujo; Natália Franceschi; Laerte Ferreiro. "Bovine ringworm - Detection of Trichophyton verrucosum by SYBR-Green real-time PCR". Medical Mycology Case Reports (2023): https://doi.org/10.1016/j.mmcr.2023.01.002.
    10.1016/j.mmcr.2023.01.002
  7. Alexandre Rodrigues; Alexandre Gonçalves; Juliana Morais; Ricardo Araujo; Inês Falcão-Pires. "Diet-Induced Microbiome’s Impact on Heart Failure: A Double-Edged Sword". Nutrients (2023): https://doi.org/10.3390/nu15051223.
    10.3390/nu15051223
  8. Maria João Azevedo; Ricardo Araujo; Joana Campos; Carla Campos; Ana Filipa Ferreira; Inês Falcão-Pires; Carla Ramalho; et al. "Vertical Transmission and Antifungal Susceptibility Profile of Yeast Isolates from the Oral Cavity, Gut, and Breastmilk of Mother–Child Pairs in Early Life". International Journal of Molecular Sciences (2023): https://doi.org/10.3390/ijms24021449.
    10.3390/ijms24021449
  9. Susana Sampaio; Ricardo Araujo; Ana Merino-Riba; Benjamin Lelouvier; Florence Servant; Janete Quelhas-Santos; Manuel Pestana; Benedita Sampaio-Maia. "Blood, Gut, and Oral Microbiome in Kidney Transplant Recipients". Indian Journal of Nephrology (2023): http://dx.doi.org/10.4103/ijn.ijn_168_22.
    10.4103/ijn.ijn_168_22
  10. Ricardo Araujo; Marta Borges-Canha; Pedro Pimentel-Nunes. "Microbiota Modulation in Patients with Metabolic Syndrome". Nutrients (2022): https://doi.org/10.3390/nu14214490.
    10.3390/nu14214490
  11. Ana Merino-Ribas; Ricardo Araujo; Luciano Pereira; Joana Campos; Luísa Barreiros; Marcela A. Segundo; Nádia Silva; et al. "Vascular Calcification and the Gut and Blood Microbiome in Chronic Kidney Disease Patients on Peritoneal Dialysis: A Pilot Study". Biomolecules 12 7 (2022): 867-867. https://doi.org/10.3390/biom12070867.
    10.3390/biom12070867
  12. Ricardo Araujo. "Advances in Soil Engineering: Sustainable Strategies for Rhizosphere and Bulk Soil Microbiome Enrichment". Frontiers in Bioscience-Landmark (2022): http://dx.doi.org/10.31083/j.fbl2706195.
    10.31083/j.fbl2706195
  13. Carolina F.F.A. Costa; Benedita Sampaio-Maia; Ricardo Araujo; DS Nascimento; Joana Ferreira-Gomes; Manuel Pestana; Maria João Azevedo; Ines S. Alencastre. "Gut Microbiome and Organ Fibrosis". Nutrients (2022): https://www.mdpi.com/2072-6643/14/2/352.
    10.3390/nu14020352
  14. "Gut microbiome in hemodialysis patients treated with calcium acetate or treated with sucroferric oxyhydroxide: a pilot study". International Urology and Nephrology (2021): http://dx.doi.org/10.1007/s11255-021-03091-3.
    10.1007/s11255-021-03091-3
  15. Thi Nhu Thuong Nguyen; Timothy Chataway; Ricardo Araujo; Munish Puri; Christopher Milton Mathew Franco. "Purification and Characterization of a Novel Alginate Lyase from a Marine Streptomyces Species Isolated from Seaweed". Marine Drugs 19 11 (2021): 590-590. https://doi.org/10.3390/md19110590.
    10.3390/md19110590
  16. Araujo, Ricardo. "Multiplex PCR Based Strategy for Detection of Fungal Pathogen DNA in Patients with Suspected Invasive Fungal Infections". Journal of Fungi 6 4 (2020): 308-308. http://dx.doi.org/10.3390/jof6040308.
    10.3390/jof6040308
  17. Araujo, Ricardo. "Sporothrix brasiliensis on cats with skin ulcers in Southern Brazil". Medical Mycology (2020): http://dx.doi.org/10.1093/mmy/myaa083.
    10.1093/mmy/myaa083
  18. Mônica Slaviero; Thainã Piccolo Vargas; Matheus Viezzer Bianchi; Luiza Presser Ehlers; Andréia Spanamberg; Laerte Ferreiro; Ricardo Araújo; Saulo Petinatti Pavarini. "Rhizopus microsporus segmental enteritis in a cow". Medical Mycology Case Reports (2020): https://doi.org/10.1016/j.mmcr.2020.04.002.
    10.1016/j.mmcr.2020.04.002
  19. Araujo, Ricardo; Gupta, Vadakattu VSR.; Reith, Frank; Bissett, Andrew; Mele, Pauline; Franco, Christopher MM.. "Biogeography and emerging significance of Actinobacteria in Australia and Northern Antarctica soils". Soil Biology and Biochemistry (2020): 107805. http://dx.doi.org/10.1016/j.soilbio.2020.107805.
    10.1016/j.soilbio.2020.107805
  20. Araujo, Ricardo. "Analogous wheat root rhizosphere microbial successions in field and greenhouse trials in the presence of biocontrol agents Paenibacillus peoriae SP9 and Streptomyces fulvissimus FU14". Molecular Plant Pathology (2020): http://dx.doi.org/10.1111/mpp.12918.
    10.1111/mpp.12918
  21. Araujo, Ricardo. "Influence of delivery and feeding mode in oral fungi colonization – a systematic review". Microbial Cell (2020): http://dx.doi.org/10.15698/mic2020.02.706.
    10.15698/mic2020.02.706
  22. Araujo, Ricardo. "Peritoneal Microbiome in End-Stage Renal Disease Patients and the Impact of Peritoneal Dialysis Therapy". Microorganisms (2020): http://dx.doi.org/10.3390/microorganisms8020173.
    10.3390/microorganisms8020173
  23. Rita Caramalho; Lisa Madl; Katharina Rosam; Günter Rambach; Cornelia Speth; Johannes Pallua; Thomas Larentis; et al. "Evaluation of a Novel Mitochondrial Pan-Mucorales Marker for the Detection, Identification, Quantification, and Growth Stage Determination of Mucormycetes". Journal of Fungi (2019): https://www.mdpi.com/2309-608X/5/4/98.
    10.3390/jof5040098
  24. Araujo, Ricardo. "Decoding Wheat Endosphere–Rhizosphere Microbiomes in Rhizoctonia solani–Infested Soils Challenged by Streptomyces Biocontrol Agents". Frontiers in Plant Science (2019): http://dx.doi.org/10.3389/fpls.2019.01038.
    10.3389/fpls.2019.01038
  25. Araujo, Ricardo. "Feline Sino-orbital Fungal Infection Caused by Aspergillus and Scopulariopsis". Acta Scientiae Veterinariae (2019): http://dx.doi.org/10.22456/1679-9216.91581.
    10.22456/1679-9216.91581
  26. Araujo, Ricardo. "Influence of dialysis therapies on oral health: a pilot study". Quintessence International (2019): http://doi.org/10.3290/j.qi.a41920.
    10.3290/j.qi.a41920
  27. Güngör Ö; Sampaio-Maia B; Amorim A; Araujo R; Erturan Z. "Determination of Azole Resistance and TR34/L98H Mutations in Isolates of Aspergillus Section Fumigati from Turkish Cystic Fibrosis Patients.". Mycopathologia (2018): http://europepmc.org/abstract/med/30187246.
    10.1007/s11046-018-0297-y
  28. Simões-Silva L; Araujo R; Pestana M; Soares-Silva I; Sampaio-Maia B. "The microbiome in chronic kidney disease patients undergoing hemodialysis and peritoneal dialysis.". Pharmacological research (2018): http://europepmc.org/abstract/med/29444477.
    10.1016/j.phrs.2018.02.011
  29. Araujo R; Sampaio-Maia B. "Fungal Genomes and Genotyping.". Advances in applied microbiology (2017): http://europepmc.org/abstract/med/29680126.
    10.1016/bs.aambs.2017.10.003
  30. Franco CMM; Adetutu EM; Le HX; Ballard RA; Araujo R; Tobe SS; Paul B; Mallya S; Satyamoorthy K. "Complete Genome Sequences of the Endophytic Streptomyces sp. Strains LUP30 and LUP47B, Isolated from Lucerne Plants.". Genome announcements (2017): http://europepmc.org/abstract/med/28619813.
    10.1128/genomea.00556-17
  31. Simões-Silva L; Silva S; Santos-Araujo C; Sousa J; Pestana M; Araujo R; Soares-Silva I; Sampaio-Maia B. "Oral Yeast Colonization and Fungal Infections in Peritoneal Dialysis Patients: A Pilot Study.". The Canadian journal of infectious diseases & medical microbiology = Journal canadien des maladies infectieuses et de la microbiologie medicale (2017): http://europepmc.org/abstract/med/29430252.
    10.1155/2017/4846363
  32. Franco, C.M.M.; Araujo, R.; Adetutu, E.; Tobe, S.S.; Mallya, S.; Paul, B.; Satyamoorthy, K.. "Complete genome sequences of the endophytic Streptomyces strains EN16, EN23, and EN27, isolated from wheat plants". Genome Announcements 4 6 (2016): http://www.scopus.com/inward/record.url?eid=2-s2.0-85007605907&partnerID=MN8TOARS.
    10.1128/genomeA.01342-16
  33. Araujo, R.; Caramalho, R.; Coutinho, C.; Sá-Correia, I.. "SNaPBceBcon: A Practical Tool for Identification and Genotyping of Burkholderia cepacia and Burkholderia contaminans". Journal of Clinical Microbiology 54 2 (2016): 483-488. http://www.scopus.com/inward/record.url?eid=2-s2.0-84956690347&partnerID=MN8TOARS.
    10.1128/JCM.02476-15
  34. Spanamberg, A.; Ferreiro, L.; Machado, G.; Fraga, C.F.; Araujo, R.. "Identification and characterization of Aspergillus fumigatus isolates from broilers". Pesquisa Veterinaria Brasileira 36 7 (2016): 591-594. http://www.scopus.com/inward/record.url?eid=2-s2.0-84988650169&partnerID=MN8TOARS.
    10.1590/S0100-736X2016000700005
  35. Oliveira, M.; Pereira, C.; Bessa, C.; Araujo, R.; Saraiva, L.. "Hydrogen peroxide-induced secondary necrosis in conidia of Aspergillus fumigatus". Canadian Journal of Microbiology 62 2 (2015): 95-101. http://www.scopus.com/inward/record.url?eid=2-s2.0-84956669792&partnerID=MN8TOARS.
    10.1139/cjm-2015-0561
  36. Oliveira, M.; Pereira, C.; Bessa, C.; Araujo, R.; Saraiva, L.. "Chronological aging in conidia of pathogenic Aspergillus: Comparison between species". Journal of Microbiological Methods 118 (2015): 57-63. http://www.scopus.com/inward/record.url?eid=2-s2.0-84940983960&partnerID=MN8TOARS.
    10.1016/j.mimet.2015.08.021
  37. Caramalho, R.; Maurer, E.; Binder, U.; Araújo, R.; Dolatabadi, S.; Lass-Flörl, C.; Lackner, M.. "Etest cannot be recommended for In Vitro susceptibility testing of mucorales". Antimicrobial Agents and Chemotherapy 59 6 (2015): 3663-3665. http://www.scopus.com/inward/record.url?eid=2-s2.0-84929645822&partnerID=MN8TOARS.
    10.1128/AAC.00004-15
  38. Araujo, R.; Oliveira, M.; Amorim, A.; Sampaio-Maia, B.. "Unpredictable susceptibility of emerging clinical moulds to tri-azoles: review of the literature and upcoming challenges for mould identification". European Journal of Clinical Microbiology and Infectious Diseases 34 7 (2015): 1289-1301. http://www.scopus.com/inward/record.url?eid=2-s2.0-84931578525&partnerID=MN8TOARS.
    10.1007/s10096-015-2374-1
  39. Teixeira, J.; Amorim, A.; Araujo, R.. "Recombination detection in Aspergillus fumigatus through single nucleotide polymorphisms typing". Environmental Microbiology Reports 7 6 (2015): 881-886. http://www.scopus.com/inward/record.url?eid=2-s2.0-84955185708&partnerID=MN8TOARS.
    10.1111/1758-2229.12321
  40. Araujo, R.; Eusebio, N.; Caramalho, R.. "Feasibility of mini-sequencing schemes based on nucleotide polymorphisms for microbial identification and population analyses". Applied Microbiology and Biotechnology 99 6 (2015): 2513-2521. http://www.scopus.com/inward/record.url?eid=2-s2.0-84925487104&partnerID=MN8TOARS.
    10.1007/s00253-015-6427-2
  41. Araujo, R.; Gungor, O.; Amorim, A.. "Single-tube PCR coupled with mini-sequencing assay for the detection of cyp51A and cyp51B polymorphisms in Aspergillus fumigatus". Future Microbiology 10 11 (2015): 1797-1804. http://www.scopus.com/inward/record.url?eid=2-s2.0-84948161894&partnerID=MN8TOARS.
    10.2217/fmb.15.103
  42. Monteiro-da-Silva, F.; Araujo, R.; Sampaio-Maia, B.. "Interindividual variability and intraindividual stability of oral fungal microbiota over time". Medical mycology 52 5 (2014): 498-505. http://www.scopus.com/inward/record.url?eid=2-s2.0-84925222141&partnerID=MN8TOARS.
    10.1093/mmy/myu027
  43. Araujo, R.. "Towards the Genotyping of Fungi: Methods, Benefits and Challenges". Current Fungal Infection Reports 8 3 (2014): 203-210. http://www.scopus.com/inward/record.url?eid=2-s2.0-84939873652&partnerID=MN8TOARS.
    10.1007/s12281-014-0190-1
  44. Oliveira, M.; Lackner, M.; Amorim, A.; Araujo, R.. "Feasibility of mitochondrial single nucleotide polymorphisms to detect and identify Aspergillus fumigatus in clinical samples". Diagnostic Microbiology and Infectious Disease 80 1 (2014): 53-58. http://www.scopus.com/inward/record.url?eid=2-s2.0-84926170647&partnerID=MN8TOARS.
    10.1016/j.diagmicrobio.2014.05.007
  45. Soares, I.; Araujo, R.. "MLST@SNaP: User-friendly software for simplification of multilocus sequence typing and dissemination of microbial population analyses". Methods in Ecology and Evolution 5 5 (2014): 491-494. http://www.scopus.com/inward/record.url?eid=2-s2.0-84900552855&partnerID=MN8TOARS.
    10.1111/2041-210X.12170
  46. Eusebio, N.; Amorim, A.A.; Gamboa, F.; Araujo, R.. "Molecular identification and genotyping of Pseudomonas aeruginosa isolated from cystic fibrosis and non-cystic fibrosis patients with bronchiectasis". Pathogens and Disease 73 2 (2014): http://www.scopus.com/inward/record.url?eid=2-s2.0-84946400683&partnerID=MN8TOARS.
    10.1093/femspd/ftu014
  47. Almeida, A.; Albuquerque, P.; Araujo, R.; Ribeiro, N.; Tavares, F.. "Detection and discrimination of common bovine mastitis-causing streptococci". Veterinary Microbiology 164 3-4 (2013): 370-377. http://www.scopus.com/inward/record.url?eid=2-s2.0-84877142739&partnerID=MN8TOARS.
    10.1016/j.vetmic.2013.03.011
  48. Monteiro-da-Silva, F.; Sampaio-Maia, B.; Pereira, M.D.E.L.; Araujo, R.. "Characterization of the oral fungal microbiota in smokers and non-smokers". European Journal of Oral Sciences 121 2 (2013): 132-135. http://www.scopus.com/inward/record.url?eid=2-s2.0-84874421892&partnerID=MN8TOARS.
    10.1111/eos.12030
  49. Beirão, F.; Araujo, R.. "State of the art diagnostic of mold diseases: A practical guide for clinicians". European Journal of Clinical Microbiology and Infectious Diseases 32 1 (2013): 3-9. http://www.scopus.com/inward/record.url?eid=2-s2.0-84872609953&partnerID=MN8TOARS.
    10.1007/s10096-012-1722-7
  50. Caramalho, R.; Gusmão, L.; Lackner, M.; Amorim, A.; Araujo, R.. "SNaPAfu: A Novel Single Nucleotide Polymorphism Multiplex Assay for Aspergillus fumigatus Direct Detection, Identification and Genotyping in Clinical Specimens". PLoS ONE 8 10 (2013): http://www.scopus.com/inward/record.url?eid=2-s2.0-84885780173&partnerID=MN8TOARS.
    10.1371/journal.pone.0075968
  51. Eusebio, N.; Coutinho, C.P.; Sá-Correia, I.; Araujo, R.. "SNaPBcen: A novel and practical tool for genotyping Burkholderia cenocepacia". Journal of Clinical Microbiology 51 8 (2013): 2646-2653. http://www.scopus.com/inward/record.url?eid=2-s2.0-84880612617&partnerID=MN8TOARS.
    10.1128/JCM.01019-13
  52. Eusebio, N.; Pinheiro, T.; Amorim, A.A.; Gamboa, F.; Saraiva, L.; Gusmão, L.; Amorim, A.; Araujo, R.. "SNaPaer: A Practical Single Nucleotide Polymorphism Multiplex Assay for Genotyping of Pseudomonas aeruginosa". PLoS ONE 8 6 (2013): http://www.scopus.com/inward/record.url?eid=2-s2.0-84878927365&partnerID=MN8TOARS.
    10.1371/journal.pone.0066083
  53. Almeida, L.A.; Araujo, R.. "Highlights on molecular identification of closely related species". Infection, Genetics and Evolution 13 1 (2013): 67-75. http://www.scopus.com/inward/record.url?eid=2-s2.0-84870269185&partnerID=MN8TOARS.
    10.1016/j.meegid.2012.08.011
  54. Araujo, R.; Amorim, A.; Gusmão, L.. "Diversity and specificity of microsatellites within Aspergillus section Fumigati". BMC Microbiology 12 (2012): http://www.scopus.com/inward/record.url?eid=2-s2.0-84864234481&partnerID=MN8TOARS.
    10.1186/1471-2180-12-154
  55. Rosa, C.; Araujo, R.; Rodrigues, A.G.; Pinto-de-Sousa, M.I.; Pina-Vaz, C.. "Detection of Aspergillus species in BACTEC blood cultures". Journal of Medical Microbiology 60 10 (2011): 1467-1471. http://www.scopus.com/inward/record.url?eid=2-s2.0-80053146290&partnerID=MN8TOARS.
    10.1099/jmm.0.030601-0
  56. Serrano, R.; Gusmão, L.; Amorim, A.; Araujo, R.. "Rapid identification of aspergillus fumigatus within the section fumigati". BMC Microbiology 11 (2011): http://www.scopus.com/inward/record.url?eid=2-s2.0-79954602272&partnerID=MN8TOARS.
    10.1186/1471-2180-11-82
  57. Araujo, R.; Amorim, A.; Gusmão, L.. "Genetic diversity of Aspergillus fumigatus in indoor hospital environments". Medical Mycology 48 6 (2010): 832-838. http://www.scopus.com/inward/record.url?eid=2-s2.0-77955861091&partnerID=MN8TOARS.
    10.3109/13693780903575360
  58. Amorim, A.; Guedes-Vaz, L.; Araujo, R.. "Susceptibility to five antifungals of Aspergillus fumigatus strains isolated from chronically colonised cystic fibrosis patients receiving azole therapy". International Journal of Antimicrobial Agents 35 4 (2010): 396-399. http://www.scopus.com/inward/record.url?eid=2-s2.0-76749126473&partnerID=MN8TOARS.
    10.1016/j.ijantimicag.2009.12.007
  59. Araujo, R.; Espinel-Ingroff, A.. "Comparison of assessment of oxygen consumption, Etest, and CLSI M38-A2 broth microdilution methods for evaluation of the susceptibility of Aspergillus fumigatus to posaconazole". Antimicrobial Agents and Chemotherapy 53 11 (2009): 4921-4923. http://www.scopus.com/inward/record.url?eid=2-s2.0-70350331089&partnerID=MN8TOARS.
    10.1128/AAC.00862-09
  60. Araujo, R.; Costa-De-Oliveira, S.; Coutinho, I.; Rodrigues, A.G.; Pina-Vaz, C.. "Evaluating the resistance to posaconazole by E-test and CLSI broth microdilution methodologies of candida spp. and pathogenic moulds". European Journal of Clinical Microbiology and Infectious Diseases 28 9 (2009): 1137-1140. http://www.scopus.com/inward/record.url?eid=2-s2.0-70349667149&partnerID=MN8TOARS.
    10.1007/s10096-009-0736-2
  61. Araujo, R.; Pina-Vaz, C.; Rodrigues, A.G.; Amorim, A.; Gusmão, L.. "Simple and highly discriminatory microsatellite-based multiplex PCR for Aspergillus fumigatus strain typing". Clinical Microbiology and Infection 15 3 (2009): 260-266. http://www.scopus.com/inward/record.url?eid=2-s2.0-63549106439&partnerID=MN8TOARS.
    10.1111/j.1469-0691.2008.02661.x
  62. Araujo, R.; Amorim, A.; Gusmão, L.. "Microbial forensics: Do Aspergillus fumigatus strains present local or regional differentiation?". Forensic Science International: Genetics Supplement Series 2 1 (2009): 297-299. http://www.scopus.com/inward/record.url?eid=2-s2.0-70649083168&partnerID=MN8TOARS.
    10.1016/j.fsigss.2009.08.145
  63. Araujo, R.; Carneiro, A.; Costa-Oliveira, S.; Pina-Vaz, C.; Rodrigues, A.G.; Guimaraes, J.E.. "Fungal infections after haematology unit renovation: Evidence of clinical, environmental and economical impact". European Journal of Haematology 80 5 (2008): 436-443. http://www.scopus.com/inward/record.url?eid=2-s2.0-41849091492&partnerID=MN8TOARS.
    10.1111/j.1600-0609.2008.01034.x
  64. Costa-De-Oliveira, S.; Araujo, R.; Silva-Dias, A.; Pina-Vaz, C.; Rodrigues, A.G.. "Propofol lipidic infusion promotes resistance to antifungals by reducing drug input into the fungal cell". BMC Microbiology 8 (2008): http://www.scopus.com/inward/record.url?eid=2-s2.0-40149096061&partnerID=MN8TOARS.
    10.1186/1471-2180-8-9
  65. Araujo, R.; Cabral, J.P.; Rodrigues, A.G.. "Air filtration systems and restrictive access conditions improve indoor air quality in clinical units: Penicillium as a general indicator of hospital indoor fungal levels". American Journal of Infection Control 36 2 (2008): 129-134. http://www.scopus.com/inward/record.url?eid=2-s2.0-39749135713&partnerID=MN8TOARS.
    10.1016/j.ajic.2007.02.001
  66. Araujo, R.; Coutinho, I.; Espinel-ingroff, A.. "Rapid method for testing the susceptibility of Aspergillus fumigatus to amphotericin B, itraconazole, voriconazole and posaconazole by assessment of oxygen consumption". Journal of Antimicrobial Chemotherapy 62 6 (2008): 1277-1280. http://www.scopus.com/inward/record.url?eid=2-s2.0-56649116097&partnerID=MN8TOARS.
    10.1093/jac/dkn415
  67. Rodrigues, A.G.; Araujo, R.. "Comparison of Andersen and honey jar methods for monitoring hospital wards". Indoor and Built Environment 16 1 (2007): 71-76. http://www.scopus.com/inward/record.url?eid=2-s2.0-33846541865&partnerID=MN8TOARS.
    10.1177/1420326X06074840
  68. Araujo, R.; Pina-Vaz, C.; Rodrigues, A.G.. "Susceptibility of environmental versus clinical strains of pathogenic Aspergillus". International Journal of Antimicrobial Agents 29 1 (2007): 108-111. http://www.scopus.com/inward/record.url?eid=2-s2.0-33845633202&partnerID=MN8TOARS.
    10.1016/j.ijantimicag.2006.09.019
  69. Araujo, R.; Gonçalves Rodrigues, A.; Pina-Vaz, C.. "Susceptibility pattern among pathogenic species of Aspergillus to physical and chemical treatments". Medical Mycology 44 5 (2006): 439-443. http://www.scopus.com/inward/record.url?eid=2-s2.0-33746806882&partnerID=MN8TOARS.
    10.1080/13693780600654414
  70. Rodrigues, A.G.; Araujo, R.; Pina-Vaz, C.. "Interaction of local anaesthetics with other antifungal agents against pathogenic Aspergillus". International Journal of Antimicrobial Agents 27 4 (2006): 339-343. http://www.scopus.com/inward/record.url?eid=2-s2.0-33645972324&partnerID=MN8TOARS.
    10.1016/j.ijantimicag.2005.11.011
  71. Rodrigues, A.G.; Araujo, R.; Pina-Vaz, C.. "Human albumin promotes germination, hyphal growth and antifungal resistance by Aspergillus fumigatus". Medical Mycology 43 8 (2005): 711-717. http://www.scopus.com/inward/record.url?eid=2-s2.0-33644793887&partnerID=MN8TOARS.
    10.1080/13693780500129814
  72. Araujo, R.; Rodrigues, A.G.. "Variability of germinative potential among pathogenic species of Aspergillus". Journal of Clinical Microbiology 42 9 (2004): 4335-4337. http://www.scopus.com/inward/record.url?eid=2-s2.0-4644296433&partnerID=MN8TOARS.
    10.1128/JCM.42.9.4335-4337.2004
  73. Araujo, R.; Rodrigues, A.G.; Pina-Vaz, C.. "A fast, practical and reproducible procedure for the standardization of the cell density of an Aspergillus suspension". Journal of Medical Microbiology 53 8 (2004): 783-786. http://www.scopus.com/inward/record.url?eid=2-s2.0-4344578281&partnerID=MN8TOARS.
    10.1099/jmm.0.05425-0
Activities

Jury of academic degree

Topic
Role 		Candidate name (Type of degree)
Institution / Organization
2012 Multiple PhD and master thesis over the years Multiple candidates (PhD)

Association member

Society Organization name Role
2008 - Current European Society of Allergology and Clinical Immunology Portuguese Society of Allergology and Clinical Immunology
2008 - Current American Society of Microbiology

Committee member

Activity description
Role 		Institution / Organization
2014 - Current Member of the editorial board of the journals World Journal of Clinical Infectious Diseases, World Journal of Biological Chemistry, Community Acquired Infection, American Journal of Microbiology and Biotechnology, and EC Pulmonology and Respiratory Medicine.
Advisor / Consultant

Conference scientific committee

Conference name Conference host
2015 - 2015 Trends in Medical Mycology Lisbon

Course / Discipline taught

Academic session Degree Subject (Type) Institution / Organization
2013 - 2013 Seminars in Non-Human Forensic Genetics (Postgraduate Certificate) Universidad Complutense de Madrid, Spain
2010 - 2013 Non-human forensics Genética Forense (Mestrado integrado) Universidade do Porto, Portugal

Journal scientific committee

Journal title (ISSN) Publisher
2020 - Current Clinical Infectious Diseases (Editorial Advisory Board) Oxford Academic
2021/03 - 2022/06 Nutrients special issue "Frontier of Diet and Chronic Disease: New Progress on Fibrotic Diseases Inflammation and Pain" MDPI

Mentoring / Tutoring

Topic Student name
2009 - Current Multiple topics for Master and PhD thesis Multiple candidates
2009 - 2014 Evaluating genotype diversity, persistence and dispersion of Aspergillus fumigatus in the environment Manuela Oliveira

Other jury / evaluation

Activity description Institution / Organization
2021 - Current Revision of research projects for Science Fund of the Republic of Serbia
2021 - Current European Commission appointment for the expert panel in the field of medical devices
2016 - 2020 Revision of research projects for the Romanian National Council for Research.
2014 - 2020 Revision of research projects for the National Center of Science and Technology Evaluation of the Republic of Kazakhstan
2019 - 2019 Revision of research projects for University of Medicine and Pharmacy of Timisoara, Romania.
2017 - 2017 Revision of research projects for the Open Programme for Earth and Life Sciences conducted by Netherlands Organisation for Scientific Research (NWO), Earth and Life sciences division
2015 - 2015 Revision of research projects for the National Science Center in Poland.
2011 - 2011 Revision of research projects for the Israel Science Foundation
Distinctions

Award

2021 2nd Prize Thomé Villar 2021
Sociedade Portuguesa de Pneumologia, Portugal
2021 1º Prize Raul Martins - Baxter
Sociedade Portuguesa de Nefrologia, Portugal

Other distinction

2016 Endeavour Fellowship
Commonwealth of Australia, Australia
2014 EAACI Mentorship programme
2007 Postdoctoral fellowship
2004 PhD fellowship