Jorge Almiro Barceló Caldeira Pinto Paiva (191A-523C-B25E)

Curriculum Vitae

Jorge Almiro Barceló Caldeira Pinto Paiva

Jorge Almiro P. Paiva co-CEO for Research of Associação CECOLAB – The Collaborative Laboratory towards Circular Economy, since 2021. Since 2016, JAPP holds, a PhD in Biology by Nova University of Lisbon (Portugal), and a PhD on Cellular and Molecular Biology by Bordeaux University (France). Since 2006, JAPP collaborates with Instituto de Biologia Experimental e Tecnológica (iBET). From July 2009 to June 2014, JPAPP was Auxiliary Researcher at the former Tropical Research Institute (Instituto de Investigação Científica Tropical, Portugal). From June 2015 to 2019, JAPP worked at Institute of Plant Genetics, Polish Academy of Sciences (Polska Akademia Nauk Instytut Genetyki Roslin) as auxiliar Researcher (Adjunk). In 2020, he returned to Portugal, to integrate CECOLAB as Director of Research Department of this Collaborative Laboratory. JAPP has large expertise and knowledge on forest genomics, participating on the Eucalyptus genome sequencing effort, and on deciphering genes involved on regulation of wood formation or cork formation and their variability, as well as on diversity of forest species, collaborating with several international research institution and one of the main forest companies (Altri FLorestal SA). In Poland, he was one of the pioneers on willow genomics, being responsible for the development, for the first time, of the methodology for purple willow root transformation system, a milestone for this species studies. Nowadays, Paiva’s main interest is to explore the biodiversity present in environmental samples, as a tool to develop new strategies for Industrial Biotechnology applications, that allow to lever the transition towards Circular Economy, where the study of microbiome and macrofungi play an important role. JAPP published 25 articles in high impact journals, 3 book chapter (Index-H: 17; nº citations: 1291). He supervised 1 PhD thesis(es) e co-supervised 1 PhD thesis. He also supervised 3 MSc dissertation(s) e co-supervised other 3 dissertations. He has received 8 awards and/or honours. Participated as Principal investigator in 6 project(s), bring together about 1.8M€, and was co-Researcher in 11 project(s). Works in the area(s) of Natural sciences with emphasis on Biological Sciences - Molecular Biology. Key-words: Circular Economy, Industrial Biotechnology, forest genomics, biomass, transcriptional and post-transcription regulation, genetic diversity, molecular markers, DNA barcoding, omic tools.

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Identification

Personal identification

Full name: Jorge Almiro Barceló Caldeira Pinto Paiva

Citation names

Paiva, Jorge
Jorge A. P. Paiva

Author identifiers

Ciência ID: 191A-523C-B25E
ORCID iD: 0000-0003-3162-4396
Google Scholar ID: https://scholar.google.com/citations?user=ZrB-ddwAAAAJ&hl=pt-PT&oi=ao
Researcher Id: C-2858-2008
Scopus Author Id: 23985522600

Email addresses

jorge.pinto.paiva@gmail.com (Professional)

Knowledge fields

Natural sciences - Biological Sciences - Molecular Biology
Natural sciences - Biological Sciences - Biology
Agrarian Sciences - Agriculture, Forestry and Fisheries - Plant Breeding and Plant Protection
Agrarian Sciences - Agriculture, Forestry and Fisheries - Forestry

Languages

Language	Speaking	Reading	Writing	Listening	Peer-review
Portuguese (Mother tongue)
English	Intermediate (B1)	Advanced (C1)	Upper intermediate (B2)	Advanced (C1)	Advanced (C1)
French	Advanced (C1)	Proficiency (C2)	Intermediate (B1)	Proficiency (C2)	Upper intermediate (B2)

Education

	Degree	Classification
2023/10/12 - 2024/07 Ongoing	Post-graduation on Sustainability and Regeneration (Pós-Graduação) Universidade Católica Portuguesa Católica Porto Business School, Portugal Universidade Católica Portuguesa Escola Superior de Biotecnologia, Portugal
2023/04/21 - 2023/07/14 Concluded	Programa Intensivo de Gestão (Intensive Management Programme) (Pós-Graduação) Universidade Católica Portuguesa Católica Porto Business School, Portugal
2023/06/07 - 2023/06/26 Concluded	Gestão de projeto (Outros) Vexillum, Lda (FormaçãOnline), Portugal
2023/02/26 Concluded	Concepção e Gestão da Formação (e-learning) (Outros) Vertiriva Lda., Portugal
2019/10/16 - 2019/10/17 Concluded	4th TRAINING 4th TRAINING SCHOOL – COST IPLANTA CA15223 - Application of RNA molecules by high pressure spraying. (Outros) RLP AgroScience GmbH, Germany
2019/09/06 - 2019/09/06 Concluded	3 rd COST IPLANTA TRAINING SCHOOL ‘Microscopy and studying cellular uptake of dsRNA for improved RNAi efficiency (Outros) Universiteit Gent, Belgium
2017/06/26 - 2018/06/30 Concluded	Workshop on legume transformation: Old and new genetic engineering techniques to scope with environmental challenges (Outros) Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal
2014/07/07 - 2014/07/18 Concluded	Curso de Introdução à Análise Estatística e aos SIG com R (Introduction to the Statistical Analysis and GIS with R) (Outros) Universidade de Lisboa Instituto Superior de Agronomia, Portugal
2014/06/02 - 2014/06/03 Concluded	1st edition Nova Supervisors Course (Outros) Universidade Nova de Lisboa Centro de Estudos de Doenças Crónicas, Portugal
2014/02/12 - 2014/02/14 Concluded	COST ACTION TRAINING SCHOOL - "New Genetic Engineering Techniques for Tree Improvement" (Outros) Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal
2002/01/01 - 2006/05/29 Concluded	Biologia (Doutoramento) Major in Especialidade: Biologia Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal "Phenotypic and Molecular Plasticity of Wood Forming Tissues in Maritime Pine (pinus Pinaster Ait.)" (THESIS/DISSERTATION)
2002/01/01 - 2006/05/29 Concluded	Cell and Molecular Biology (Doctorat) Université de Bordeaux, France "Phenotypic and molecular plasticity of wood forming tissues in maritime pine (Pinus pinaster Ait.)" (THESIS/DISSERTATION)	"Très honorable"
1999 Concluded	Tropical Agronomy - Produção Agrícola Tropical (Mestrado) Universidade de Lisboa Instituto Superior de Agronomia, Portugal "Avaliação da Resistência de B. juncea (L.) Czernj. & Coss. à Xanthomonas campestris pv.campestris (Pammel) Dowson" (THESIS/DISSERTATION)	15/20 (10% of the best classifications)
1993 Concluded	Engenharia Agronómica (Licenciatura) Universidade de Lisboa Instituto Superior de Agronomia, Portugal "Final report: Multiplicação de Ananas comosus (L.) Merr. in vitro. (In vitro tissue culture of Ananas comosus (L.))." (THESIS/DISSERTATION)	13

Affiliation

Science

	Category Host institution	Employer
2008/01/01 - 2022/12	Visiting Researcher (Research)	Instituto de Biologia Experimental e Tecnológica, Portugal
	Instituto de Biologia Experimental e Tecnológica, Portugal
2015/06/01 - 2019/12/31	Auxiliary Researcher (Research)	Polska Akademia Nauk Instytut Genetyki Roslin, Poland
	Polska Akademia Nauk Instytut Genetyki Roslin, Poland
2016 - 2018	Researcher (Research)	BioResources 4 Sustainability, Portugal
	Instituto de Biologia Experimental e Tecnológica, Portugal
2014/10/01 - 2015/05/31	Postdoc (Research)	FCT - Fundação para a Ciência e a Tecnologia , Portugal
	Instituto de Biologia Experimental e Tecnológica, Portugal
2015 - 2015	Researcher (Research)	BioResources 4 Sustainability, Portugal
	Instituto de Biologia Experimental e Tecnológica, Portugal
2009/07/01 - 2014/06/30	Auxiliary Researcher (Research)	Instituto de Investigação Científica Tropical, Portugal
	Instituto de Investigação Científica Tropical, Portugal
2006/10/01 - 2007/03/31	Postdoc (Research)	BIOGECO, France
	BIOGECO, France
2006/03/01 - 2006/09/30	Research Trainee (Research)	Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal
	Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal
1999/01/01 - 2001/08/31	Research Trainee (Research)	Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal
	Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal
1997/01/01 - 1998/12/31	Research Trainee (Research)	Universidade de Lisboa Instituto Superior de Agronomia, Portugal
	Universidade de Lisboa Instituto Superior de Agronomia, Portugal

Others

	Category Host institution	Employer
2021/10 - 2024/03/27	co-CEO Investigação (Co-CEO Rechearch)	Associação CECOLAB - Collaborative Laboratory Towards Circular Economy, Portugal
	Associação CECOLAB - Collaborative Laboratory Towards Circular Economy, Portugal
2020/02/03 - 2024/03/27	Director de Investigação (Research Director)	CECOLAB - Collaborative Laboratory towards Circular Economy, Portugal
	CECOLAB - Collaborative Laboratory towards Circular Economy, Portugal

Projects

Contract

	Designation	Funders
2016/05/12 - 2020/05/11	PurpleWalls - zintegrowane badania nad (de) regulacja ekspresji genomu w procesie biosyntezy drewna u wierzby purpurowej (Salix purpurea) grant.2015/18/E/NZ2/00694 UMO-2015/18/E/NZ2/00694 Principal investigator Polska Akademia Nauk Instytut Genetyki Roslin, Poland	National Science Center Ongoing
2016/07/01 - 2019/12/31	egoSELF: Uma estratégia de Biologia Integrativa para o estudo das bases moleculares da depressão endogâmica em Eucalyptus globulus grant.Provided by PTCRIS: 139556 Principal investigator Instituto de Biologia Experimental e Tecnológica, Portugal	FCT - Fundação para a Ciência e a Tecnologia Ongoing
2013/01 - 2016/12	PROCOGEN - Promoting a functional and comparative understanding of the conifer genome- implementing applied aspects for more productive and adapted forests. FP7-KBBE-2011-5 Researcher Instituto de Biologia Experimental e Tecnológica, Portugal	EC - RTD/E/04 Concluded
2013/07/01 - 2016/07/03	Tratamento de Dados em Larga-escala em Ambientes Nuvem EXCL/EEI-ESS/0257/2012 Universidade de Lisboa Instituto Superior de Agronomia, Portugal Fundacao de Computacao Cientifica Nacional, Portugal Instituto de Biologia Experimental e Tecnológica, Portugal Instituto de Engenharia de Sistemas e Computadores Investigação e Desenvolvimento em Lisboa, Portugal	Fundação para a Ciência e a Tecnologia Concluded
2013/07 - 2016/06	Large-Scale Data Management in Cloud Environments Provided by PTCRIS: 127044 127044 Researcher	Fundação para a Ciência e a Tecnologia, I.P. Concluded
2011/04/01 - 2015/03/31	TREEFORJOULES - Improving eucalypt and poplar wood properties for bioenergy 116475 Provided by PTCRIS: 116475 PTDC/AGR-GPL/098179/2008 Principal investigator Instituto de Biologia Experimental e Tecnológica, Portugal	Fundação para a Ciência e a Tecnologia, I.P.
2012/03 - 2015/02	CAMP - Computational Analysis of MicroRNAs in Plants 122534 Provided by PTCRIS: 122534 Researcher	Fundação para a Ciência e a Tecnologia, I.P. Concluded
2011/04 - 2014/09	Deciphering grain filling mechanisms in Phaseolus vulgaris L. under water deficit Provided by PTCRIS: 110244 110244 Researcher	Fundação para a Ciência e a Tecnologia, I.P.
2010/04 - 2013/09	Integration of transcriptomic, proteomic and metabolomics profiles to understand the role of T6P in the water deficit response and recovery in Medicago truncatula 99866 Provided by PTCRIS: 99866 Researcher	Fundação para a Ciência e a Tecnologia, I.P.
2010/03/01 - 2013/08/31	Did you ask for something small? The microRNAs power in a Eucalyptus tension world! (the microEGo project) PTDC/AGR-GPL/098179/2008 98179 Provided by PTCRIS: 98179 Principal investigator Instituto de Biologia Experimental e Tecnológica, Portugal	Fundação para a Ciência e a Tecnologia, I.P. Concluded
2010/01/01 - 2013/06/30	Genomics of Cork Formation: an integrated approach of cork quality PTDC/AGR-GPL/101785/200 101785 Provided by PTCRIS: 101785 Researcher Instituto de Biologia Experimental e Tecnológica, Portugal	Fundação para a Ciência e a Tecnologia, I.P. Concluded
2009/12/23 - 2011/06/30	Consórcio de ESTs de sobreiro - abrolhamento e desenvolvimento foliar SOBREIRO/0039/2009 Instituto de Biologia Experimental e Tecnológica, Portugal Instituto Nacional de Investigação Agrária e Veterinária, Portugal Universidade de Lisboa Instituto Superior de Agronomia, Portugal	Fundação para a Ciência e a Tecnologia Concluded
2009/12/01 - 2011/06/30	Cork oak ESTs Consortium - bud sprouting and foliar development 109259 Provided by PTCRIS: 109259 Researcher Instituto de Investigação Científica Tropical, Portugal	Fundação para a Ciência e a Tecnologia, I.P. Concluded
2008/01/01 - 2010/12/31	GenEglobwq - Scanning for candidate genes underlying a pulp yield QTL in Eucalyptus globulus 66564 Provided by PTCRIS: 66564 PTDC/AGR-GPL/66564/2006 Principal investigator Instituto de Biologia Experimental e Tecnológica, Portugal	Fundação para a Ciência e a Tecnologia, I.P. Concluded
2007/05/01 - 2010/12/31	Calibration of NIR to assess lignin of soft - and hardwood to investigate the within- and between-tree variation of the lignin composition and content, and its influence on the pulping process 72606 Provided by PTCRIS: 72606 Researcher	Fundação para a Ciência e a Tecnologia, I.P.
2007/07 - 2010/12	Geographic variation in water use efficiency among Pinus pinaster populations Provided by PTCRIS: 74127 74127 PTDC/AGR-CFL/74127/2006 Researcher Instituto de Biologia Experimental e Tecnológica, Portugal	Fundação para a Ciência e a Tecnologia, I.P. Concluded
2009/10/01 - 2010/05/31	TransCorkQ - Transcriptomic analysis of cork quality and cambial differentiation in Quercus suber Provided by PTCRIS: 109234 109234 SOBREIRO/0015/2009 SOBREIRO/0015/2009 Principal investigator Instituto de Biologia Experimental e Tecnológica, Portugal	Fundação para a Ciência e a Tecnologia, I.P. Concluded
2005/06/01 - 2007/12/31	Molecular Markers for Portuguese pine wood quality Provided by PTCRIS: 56658 56658 PPCDT/AGR/56658/2004 Researcher Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal	Fundação para a Ciência e a Tecnologia, I.P.
2005/06/01 - 2007/12/31	Marcadores moleculares para a qualidade da madeira de pinho português POCI/AGR/56658/2004 Universidade de Trás-os-Montes e Alto Douro, Portugal Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica António Xavier, Portugal	Fundação para a Ciência e a Tecnologia Concluded
2001 - 2004	Gemini-Genetic determinism of maritime pine pulp and paper properties QLK5-CT-1999-00942 Researcher Instituto de Biologia Experimental e Tecnológica, Portugal	European Commission Concluded

Outputs

Publications

Book chapter	Araújo, Susana S.; Gomes, Carolina; Paiva, Jorge; Balestrazzi, Alma; Macovei, Anca. "MicroRNAs: Emerging Roles in Abiotic Stresses and Metabolic Processes". In Metabolic Adaptations in Plants During Abiotic Stress, 251-266. CRC Press, 2018. 10.1201/b22206-22 Kazana, Vassiliki; Tsourgiannis, Lambros; Iakovoglou, Valasia; Stamatiou, Christos; Alexandrov, Alexander; Araújo, Susana; Bogdan, Saša; et al. "Public Knowledge and Perceptions of Safety Issues Towards the Use of Genetically Modified Forest Trees: A Cross-Country Pilot Survey". In Biosafety of Forest Transgenic Trees, 223-244. Springer Netherlands, 2016. Published • 10.1007/978-94-017-7531-1_12 Parreira, José Ricardo; Branco, Diana; Almeida, André M.; Czubacka, Anna; Agacka-Moldoch, Monika; Paiva, Jorge A. P.; Tavares-Cadete, Filipe; Araújo, Susana de Sousa. "Systems Biology Approaches to Improve Drought Stress Tolerance in Plants: State of the Art and Future Challenges". In Drought Stress Tolerance in Plants, Vol 2, 433-471. Springer International Publishing, 2016. 10.1007/978-3-319-32423-4_16
Conference abstract	Lousada, J.; Paiva, Jorge; Rodrigues, J.; Aguiar, A.; Costa, R.; Silva, M.; Gaspar, M.J.; et al. "Molecular Markers for Portuguese pine wood quality". Paper presented in Congress Tree Biotechnology 2007, Ponta Delgada, Açores, 2007. Published
Conference paper	Figueiredo, Filipa; Jorge A. P. Paiva; Mário Nunes; Patrícia Vieira; Rita Pontes; Sónia Ribeiro; João Nunes. Corresponding author: Figueiredo, Filipa. "Environmental performance comparison of polylactic acid and fossil-based bioplastics: a literature review in feed and food packaging". Paper presented in 13th International Conference on Life Cycle Assessment of Food (https://perulca.com/lcafoods-lima2022/index-pc.html), Lima, 2022. Submitted Canton, F.; Le Provost, G.; Garcia, V; Barré, A.; Frigerio, J.-M.; Jorge A. P. Paiva; Fevereiro, P.; et al. "Transcriptome analysis of wood formation in maritime pine". Paper presented in Sustainable Forestry, Wood products and Biotechnology, BIOFOR 02, Vitoria-Gasteiz, 2002. Palinhos, Jorge Miguel Ferrão. "Economia do Tabaco". Paper presented in 3 Jornadas do Tabaco, Lisboa, 1994. Published
Conference poster	CARVALHO, A.; Paiva, Jorge; Lousada, J.; LIMA-BRITO, J.. "Evaluation of candidate reference genes for Pinus pinaster Ait. and Pinus sylvestris L. for qPCR analyses". Paper presented in XXXVIII Jornadas Portuguesas de Genética, 2013. CARVALHO, A.; Paiva, Jorge; Lousada, J.; LIMA-BRITO, J.. "Optimização de isolamento de RNA total em xilema e floema de Pinus sp. e estudo da estabilidade da expressão de genes de referência candidatos". Paper presented in V Jornadas Nacionais de Genética e Biotecnologia, 2013. Gaspar, M.J.; de-Lucas, A.; Gonzalez-Martinez, S. C.; Paiva, Jorge; Hidalgo, E.; Lousada, J.; Almeida, H.. "Coancestry among wind pollinated progenies from a Pinus pinaster seed orchard in a progeny trial". Paper presented in Conference at Umea, 2007.
Journal article	Adriana Rodrigues Machado; Tugba Atatoprak; Joana Santos; Elisabete M. C. Alexandre; Manuela Estevez Pintado; Jorge A. P. Paiva; João Nunes. "Potentialities of the Extraction Technologies and Use of Bioactive Compounds from Winery by-Products: A Review from a Circular Bioeconomy Perspective". Applied Sciences (2023): https://doi.org/10.3390/app13137754. 10.3390/app13137754 Geoffrey Haristoy; Laurent Bouffier; Luis Fontes; Luis Leal; Jorge A. P. Paiva; João-Pedro Pina; Jean-Marc Gion. "Genomic prediction in a multi-generation Eucalyptus globulus breeding population". Tree Genetics & Genomes (2023): https://doi.org/10.1007/s11295-022-01579-2. 10.1007/s11295-022-01579-2 Gomes, Carolina; Dupas, Annabelle; Pagano, Andrea; Grima-Pettenati, Jacqueline; Paiva, Jorge Almiro P.. "Hairy Root Transformation: A Useful Tool to Explore Gene Function and Expression in Salix spp. Recalcitrant to Transformation". Frontiers in Plant Science 10 (2019): 1427. http://dx.doi.org/10.3389/fpls.2019.01427. Open access • Published • 10.3389/fpls.2019.01427 Pau Boher; Marçal Soler; Anna Sánchez; Claire Hoede; Céline Noirot; Jorge Almiro Pinto Paiva; Olga Serra; Mercè Figueras. "A comparative transcriptomic approach to understanding the formation of cork". Plant Molecular Biology (2018): https://doi.org/10.1007/s11103-017-0682-9. 10.1007/s11103-017-0682-9 Leroy, T.; Roux, C.; Villate, L.; Bodénès, C.; Romiguier, J.; Paiva, J.A.P.; Dossat, C.; et al. "Extensive recent secondary contacts between four European white oak species". New Phytologist 214 2 (2017): 865-878. http://www.scopus.com/inward/record.url?eid=2-s2.0-85015805659&partnerID=MN8TOARS. 10.1111/nph.14413 Kazana, V.; Tsourgiannis, L.; Iakovoglou, V.; Stamatiou, C.; Alexandrov, A.; Araújo, S.; Bogdan, S.; et al. "Public attitudes towards the use of transgenic forest trees: A crosscountry pilot survey". IForest 9 APR2016 (2016): 344-353. http://www.scopus.com/inward/record.url?eid=2-s2.0-84964524338&partnerID=MN8TOARS. 10.3832/ifor1441-008 Ribeiro, T.; Barrela, R.M.; Bergès, H.; Marques, C.; Loureiro, J.; Morais-Cecílio, L.; Paiva, J.A.P.. "Advancing Eucalyptus genomics: Cytogenomics reveals conservation of Eucalyptus genomes". Frontiers in Plant Science 7 APR2016 (2016): http://www.scopus.com/inward/record.url?eid=2-s2.0-84964881983&partnerID=MN8TOARS. 10.3389/fpls.2016.00510 Soler, M.; Camargo, E.L.O.; Carocha, V.; Cassan-Wang, H.; San Clemente, H.; Savelli, B.; Hefer, C.A.; et al. "The Eucalyptus grandis R2R3-MYB transcription factor family: Evidence for woody growth-related evolution and function". New Phytologist 206 4 (2015): 1364-1377. http://www.scopus.com/inward/record.url?eid=2-s2.0-84928911499&partnerID=MN8TOARS. 10.1111/nph.13039 Carocha, V.; Soler, M.; Hefer, C.; Cassan-Wang, H.; Fevereiro, P.; Myburg, A.A.; Paiva, J.A.P.; Grima-Pettenati, J.. "Genome-wide analysis of the lignin toolbox of Eucalyptus grandis". New Phytologist (2015): http://www.scopus.com/inward/record.url?eid=2-s2.0-84923088328&partnerID=MN8TOARS. 10.1111/nph.13313 Carvalho, A.; Graça, C.; Carocha, V.; Pêra, S.; Lousada, J.L.; Lima-Brito, J.; Paiva, J.A.P.. "An improved total RNA isolation from secondary tissues of woody species for coding and non-coding gene expression analyses". Wood Science and Technology (2015): http://www.scopus.com/inward/record.url?eid=2-s2.0-84922727472&partnerID=MN8TOARS. 10.1007/s00226-015-0709-9 Yu, Hong; Soler, Marcal; Clemente, Helene San; Mila, Isabelle; Paiva, Jorge A. P.; Myburg, Alexander A.; Bouzayen, Mondher; Grima-Pettenati, Jacqueline; Cassan-Wang, Hua. "Comprehensive Genome-Wide Analysis of the Aux/IAA Gene Family in Eucalyptus: Evidence for the Role of EgrIAA4 in Wood Formation". Plant and Cell Physiology 56 4 (2015): 700-714. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000354730200012&KeyUID=WOS:000354730200012. 10.1093/pcp/pcu215 Myburg AA; Grattapaglia D; Tuskan GA; Hellsten U; Hayes RD; Grimwood J; Jenkins J; et al. "The genome of Eucalyptus grandis.". (2014): http://europepmc.org/abstract/med/24919147. 10.1038/nature13308 Pereira-Leal JB; Abreu IA; Alabaça CS; Almeida MH; Almeida P; Almeida T; Amorim MI; et al. "A comprehensive assessment of the transcriptome of cork oak (Quercus suber) through EST sequencing.". (2014): http://europepmc.org/abstract/med/24885229. 10.1186/1471-2164-15-371 Yu, Hong; Soler, Marcal; Mila, Isabelle; San Clemente, Helene; Savelli, Bruno; Dunand, Christophe; Paiva, Jorge A. P.; et al. "Genome-Wide Characterization and Expression Profiling of the AUXIN RESPONSE FACTOR (ARF) Gene Family in Eucalyptus grandis". PloS one 9 9 (2014): e108906-e108906. 10.1371/journal.pone.0108906 Ana Carvalho; Jorge Paiva; José Louzada; José Lima-Brito. "The Transcriptomics of Secondary Growth and Wood Formation in Conifers". Molecular Biology International 2013 (2013): 1-12. http://dx.doi.org/10.1155/2013/974324. 10.1155/2013/974324 Da Fonseca, P.G.; Paiva, J.A.; Almeida, L.G.; Vasconcelos, A.T.; Freitas, A.T.. "Empirical assessment of sequencing errors for high throughput pyrosequencing data". BMC Research Notes 6 1 (2013): http://www.scopus.com/inward/record.url?eid=2-s2.0-84872462642&partnerID=MN8TOARS. 10.1186/1756-0500-6-25 Jorge S Oliveira. "A Computational Approach for MicroRNA Identification in Plants: Combining Genome-Based Predictions with RNA-Seq Data". J Data Mining in Genom Proteomics 04 03 (2013): http://dx.doi.org/10.4172/2153-0602.1000130. 10.4172/2153-0602.1000130 Cassan-Wang, H.; Soler, M.; Yu, H.; Camargo, E.L.O.; Carocha, V.; Ladouce, N.; Savelli, B.; et al. "Reference genes for high-throughput quantitative reverse transcription-PCR analysis of gene expression in organs and tissues of eucalyptus grown in various environmental conditions". Plant and Cell Physiology 53 12 (2012): 2101-2116. http://www.scopus.com/inward/record.url?eid=2-s2.0-84870768419&partnerID=MN8TOARS. 10.1093/pcp/pcs152 Paiva, Jorge AP; Fevereiro, Pedro; Marques, Pedro; Rodrigues, José Carlos; Le Provost, Grégoire; Plomion, Christophe; Grima-Pettenati, Jacqueline; et al. "Deciphering cork formation in Quercus suber". BMC Proceedings 5 S7 (2011): http://dx.doi.org/10.1186/1753-6561-5-s7-p172. Published • 10.1186/1753-6561-5-s7-p172 Paiva, Jorge AP; Rodrigues, José Carlos; Fevereiro, Pedro; Neves, Lucinda; Araújo, Clara; Marques, Cristina; Freitas, Ana Teresa; Bergès, Hélène; Grima-Pettenati, Jacqueline. "Building up resources and knowledge to unravel transcriptomics dynamics underlying Eucalyptus globulusxylogenesis". BMC Proceedings 5 S7 (2011): http://dx.doi.org/10.1186/1753-6561-5-s7-o52. Published • 10.1186/1753-6561-5-s7-o52 Paiva, J.A.P.; Prat, E.; Vautrin, S.; Santos, M.D.; San-Clemente, H.; Brommonschenkel, S.; Fonseca, P.G.S.; et al. "Advancing Eucalyptus genomics: Identification and sequencing of lignin biosynthesis genes from deep-coverage BAC libraries". BMC Genomics 12 (2011): http://www.scopus.com/inward/record.url?eid=2-s2.0-79952202673&partnerID=MN8TOARS. 10.1186/1471-2164-12-137 Hua Wang; Marcal Soler; Hong Yu; Eduardo Leal Camargo; Hélène San Clemente; Bruno Savelli; Nathalie Ladouce; Jorge Paiva; Jacqueline Grima-Pettenati. "Master regulators of wood formation in Eucalyptus". BMC Proceedings 5 Suppl 7 (2011): P110-P110. http://dx.doi.org/10.1186/1753-6561-5-s7-p110. Published • 10.1186/1753-6561-5-s7-p110 Capitão, C.; Paiva, J.A.P.; Santos, D.M.; Fevereiro, P.. "In Medicago truncatula, water deficit modulates the transcript accumulation of components of small RNA pathways". BMC Plant Biology 11 (2011): http://www.scopus.com/inward/record.url?eid=2-s2.0-79955728996&partnerID=MN8TOARS. 10.1186/1471-2229-11-79 Gaspar, M.J.; de-Lucas, A.I.; Alía, R.; Paiva, J.A.P.; Hidalgo, E.; Louzada, J.; Almeida, H.; González-Martínez, S.C.. "Use of molecular markers for estimating breeding parameters: A case study in a Pinus pinaster Ait. progeny trial". Tree Genetics and Genomes 5 4 (2009): 609-616. http://www.scopus.com/inward/record.url?eid=2-s2.0-70349805116&partnerID=MN8TOARS. 10.1007/s11295-009-0213-1 Chaves, I.; Pinheiro, C.; Paiva, J.A.P.; Planchon, S.; Sergeant, K.; Renaut, J.; Graça, J.A.; et al. "Proteomic evaluation of wound-healing processes in potato (Solanum tuberosum L.) tuber tissue". Proteomics 9 17 (2009): 4154-4175. http://www.scopus.com/inward/record.url?eid=2-s2.0-69949110850&partnerID=MN8TOARS. 10.1002/pmic.200700649 Paiva, J.A.P.; Garcés, M.; Alves, A.; Garnier-Géré, P.; Rodrigues, J.C.; Lalanne, C.; Porcon, S.; et al. "Molecular and phenotypic profiling from the base to the crown in maritime pine wood-forming tissue". New Phytologist 178 2 (2008): 283-301. http://www.scopus.com/inward/record.url?eid=2-s2.0-41149143707&partnerID=MN8TOARS. 10.1111/j.1469-8137.2008.02379.x Paiva, J.A.P.; Garnier-Géré, P.H.; Rodrigues, J.C.; Alves, A.; Santos, S.; Graça, J.; Le Provost, G.; et al. "Plasticity of maritime pine (Pinus pinaster) wood-forming tissues during a growing season". New Phytologist 179 4 (2008): 1080-1094. http://www.scopus.com/inward/record.url?eid=2-s2.0-49249124004&partnerID=MN8TOARS. 10.1111/j.1469-8137.2008.02536.x Le Provost, G.; Herrera, R.; Paiva, J.A.; Chaumeil, P.; Salin, F.; Plomion, C.. "A micromethod for high throughput RNA extraction in forest trees". Biological Research 40 3 (2007): 291-297. http://www.scopus.com/inward/record.url?eid=2-s2.0-41849099615&partnerID=MN8TOARS. Gion, J.-M.; Lalanne, C.; Le Provost, G.; Ferry-Dumazet, H.; Paiva, J.; Chaumeil, P.; Frigerio, J.-M.; et al. "The proteome of maritime pine wood forming tissue". Proteomics 5 14 (2005): 3731-3751. http://www.scopus.com/inward/record.url?eid=2-s2.0-17144366792&partnerID=MN8TOARS. 10.1002/pmic.200401197 Le Provost, G.; Paiva, J.; Pot, D.; Brach, J.; Plomion, C.. "Seasonal variation in transcript accumulation in wood-forming tissues of maritime pine (Pinus pinaster Ait.) with emphasis on a cell wall glycine-rich protein". Planta 217 5 (2003): 820-830. http://www.scopus.com/inward/record.url?eid=2-s2.0-0141788473&partnerID=MN8TOARS. 10.1007/s00425-003-1051-2
Thesis / Dissertation	Jorge A. P. Paiva. "Phenotypic and molecular plasticity of wood forming tissues in maritime pine (Pinus pinaster Ait.)". PhD, Universidade Nova de Lisboa, 2006. https://prodinra.inra.fr/?locale=en#!ConsultNotice:14842. Jorge A. P. Paiva. "Avaliacao da resistencia de Brassica juncea (L.) Czernj. & Coss. a Xanthomonas campestris pv. campestris (Pammel) Dowson". Master, Universidade de Lisboa Instituto Superior de Agronomia, 1999. Jorge A. P. Paiva. "Propagacao in vitro de Ananas comosus (L.) Merr. Uma contribuicao (In vitro propagation of Ananas comosus (L.). One contribution)". Degree, Universidade de Lisboa Instituto Superior de Agronomia, 1993.

Activities

Supervision

	Thesis Title Role	Degree Subject (Type) Institution / Organization
2016/06/01 - Current	The role of DNA methylation in the molecular regulatory mechanisms modulation of plant secondary growth in Salix purpurea L. Co-supervisor	Polska Akademia Nauk Instytut Genetyki Roslin, Poland
2016/03/01 - 2017/04/27	In silico identification and characterization of ICS (isochorismate synthase) gene and its expression in Salix pupurea L. Co-supervisor	Università degli Studi di Pavia Dipartimento di Biologia e Biotecnologie, Italy
2011 - 2016/11/28	Critical Players and Gene Expression Regulation in Eucalyptus Xylogenesis. Supervisor	Biologia (PhD) Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal
2013 - 2014/01/21	MicroRNAs and target genes involved in E. globulus xylogenesis: in silico prediction and experimental validation Supervisor	Biologia Funcional (Master) Universidade de Lisboa Instituto Superior de Agronomia, Portugal
2013 - 2014	Analysis of molecular diversity and cis-regulatory elements in the promoters of lignin genes in Eucalyptus species. Co-supervisor	Mestrado em Biologia Molecular e Genética (Master) Fundação da Faculdade de Ciências da Universidade de Lisboa, Portugal
2012 - 2013/06/26	Identification of microRNAs and analysis of their expression in Eucalyptus globulus Co-supervisor	Mestrado Integrado em Engenharia Biológica (Master) Universidade de Lisboa Instituto Superior Técnico, Portugal
2012 - 2013/05/17	An integrated BAC approach to the genomics of cork formation Supervisor	Biologia Funcional (Master) Universidade de Lisboa Instituto Superior de Agronomia, Portugal
2010 - 2011/12/12	Identificação e sequenciação de genes da via da lenhificação em bibliotecas BAC de Eucalyptus globulus Supervisor	Engenharia Florestal e dos Recursos Naturais (Master) Universidade de Lisboa Instituto Superior de Agronomia, Portugal

Interview (newspaper / magazine)

	Activity description	Newspaper / Forum
2018/11/30	Interview made in the frame of my participation at WORKSHOP APPLIED PLANT BIOLOGY III: GENE REGULATION IN PLANT DEVELOPMENT AND FRUIT RIPENING, Auditorio Instituto de Ciencias Biológicas, @UTalca Thursday 29 Nov 2018 10 am	Pressenza, International Press Agency

Distinctions

Other distinction

2015	Research contract (Senior Researcher)
2013	FCT Post Doc fellowship SFRH/BPD/92207/2013 Fundação para a Ciência e a Tecnologia, Portugal
2011	Best poster (ex-equo) - 26º New Phytologist Symposia
2009	Contrato Ciência 2008 Fundação para a Ciência e a Tecnologia, Portugal
2006	Best Oral Communication - "Rencontres thèses de bois"
2006	Post-Doc Researcher (SFRH/BPD/26552/2006) Fundação para a Ciência e a Tecnologia, Portugal
2002	FCT PhD fellowship - SFRH/BD/3129/2001 Fundação para a Ciência e a Tecnologia, Portugal
2001	Training student– Marie curie Fellowship (contract nº HPMT-CT-2000-00205)