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Identification

Personal identification

Full name
Lars Hestbjerg Hansen

Citation names

  • Hansen, Lars

Author identifiers

Ciência ID
251D-BBEF-529B
ORCID iD
0000-0003-0027-1524

Websites

Education
Degree Classification
2000
Concluded
 PhD at the Institute of Molecular Biology (Postgraduate Certificate)
Københavns Universitet, Denmark
Affiliation

Teaching in Higher Education

Category
Host institution 		Employer
2019/05/01 - Current Full Professor (University Teacher) Københavns Universitet, Denmark
2014/01/01 - 2019/04/30 Full Professor (University Teacher) Aarhus Universitet, Denmark
2006 - 2013 Associate Professor (University Teacher) Kobenhavns Universitet Sektion for Organismebiologi, Denmark
2000 - 2005 Assistant Professor (University Teacher) Københavns Universitet, Denmark
Projects

Grant

Designation Funders
2020 - 2026 The MATRIX: Microbiome Assisted Triticum Resilience In X-dimensions
x
Principal investigator
2018 - 2021 MicroHealth: Fecal MICRObiota transplant technology for human HEALTH
x
Principal investigator
2018 - 2021 Human Frontier Science Program Grant: New letters to the DNA alphabet
x
Principal investigator
2016 - 2020 Mem2Bio-Innovative combination of membrane technology and biological filtration for water purification
x
Principal investigator
2016 - 2019 Phytoprotect: Bacteriophages as green-tech based biocontrol of plant pathogens
x
Principal investigator
2015 - 2019 Marie-Curie ITN Grant “MicroWine”
H2020 643063
Principal investigator
Outputs

Publications

Book
  1. Søren Johannes Sørensen; Lars Hestbjerg Hansen; Mette Burmølle; Gunnar Øregaard; Pernille Hermansen. Application of whole-cell biosensors in soil. Molecular Microbial Ecology Manual. Kluwer Academic Publishers. 2004.
  2. Søren Johannes Sørensen; Julia R. de Lipthay; A.K. Müller; T. Barkay; Lars Hestbjerg Hansen; L.D. Rasmussen. Molecular methods for assessing and manipulationg the diversity of microbial populations and processes. Enzymes in the Environment. Marcel Dekker. 2002.
Book chapter
  1. Patrick D. Browne; Witold Kot; Tue Sparholt Jørgensen; Lars Hestbjerg Hansen. "The Mobilome". In Metagenomic Analysis of Circular Plasmids, Viruses, and Other Extrachromosomal Elements, edited by Cruz, {Fernando de la, 253-264. Humana Press, 2020.
    10.1007/978-1-4939-9877-7_18
  2. Martin Iain Bahl; Gunnar Oregaard; Søren Johannes Sørensen; Lars Hestbjerg Hansen. "Construction and Use of Flow Cytometry Optimized Plasmid-Sensor Strains". In Genomes in Flux, edited by Gogarten, {Maria Boekels, 257-268. Humana Press, 2009.
    10.1007/978-1-60327-853-9_15
  3. Martin Iain Bahl; Lars Hestbjerg Hansen; Søren Johannes Sørensen. "Persistence Mechanisms of Conjugative Plasmids". edited by Gogarten, {Maria Boekels, 73-102. Humana Press, 2009.
    10.1007/978-1-60327-853-9_5
  4. Mette Burmølle; Lars Hestbjerg Hansen; Søren Johannes Sørensen. "Reporter Geneechnology in Soil Ecology; Detection of Bioavailability and Microbial Interactions". 397-419. Springer, 2006.
  5. Pernille H. Poulsen; Lars Hestbjerg Hansen; Søren Johannes Sørensen. "Biosensors to Monitor Soil Health or Toxicity". edited by {van Elsas, 435-454. CRC Press, 2006.
Conference abstract
  1. Witold Kot; Lars Hestbjerg Hansen; Horst Neve; Karin Hammer; Søren Johannes Sørensen; Knut J. Heller; Finn Vogensen. "Sequence and comparative analysis of Leuconostoc dairy bacteriophages". 2011.
  2. Nadja Larsen; A.S. Andreasen; T. Pedersen-Skovsgaard; K. Møller; Frans W.J. van den Berg; Waleed Mohamad Abdel F Abu Al-Soud; Søren Johannes Sørensen; et al. "The effect of L. acidophilus NCFM intake on insulin sensitivity and gut microbiota". 2010.
  3. Pernille Hasse Busk Poulsen; Waleed Abu Al-Soud; Lars Hestbjerg Hansen; Søren Johannes Sørensen. "Investigation of prokaryotic diversity in an urban waste field trial by high throughput sequencing". 2009.
Conference poster
  1. Leise Riber; Mette Burmølle; Stefan M. Milani; Martin Alm; Peter Thomsen; Lars Hestbjerg Hansen; Søren Johannes Sørensen. "Limiting the occurrence of antimicrobial resistance through targeted interventions directed at plasmid stability". 2012.
  2. Jonas Stenløkke Madsen; Leise Riber; Mette Burmølle; Lars Hestbjerg Hansen; Søren Johannes Sørensen. "When it makes sense to socialize whilst being on the move". 2012.
  3. Leise Riber; Anders Norman; Søren Johannes Sørensen; Lars Hestbjerg Hansen. "Design and synthesis of a functional self-replicating, broad host range cloning vector from bits and bytes". 2012.
  4. Niels Kroer; Annette Møller; Tamar Barkay; Martin Asser Hansen; Anders Norman; Lars Hestbjerg Hansen; Søren Johannes Sørensen. "Novel and conserved bacterial mercuric reductase genes (merA) and mercury resistance plasmids in High Arctic snow, freshwater and sea-ice brine". 2012.
  5. Finn Vogensen; Cecilie Lykke Marvig Nielsen; Aideh Bashir; Witold Kot; Lars Hestbjerg Hansen; Horst Neve; Knut J. Heller; Søren Johannes Sørensen; Susanne Knøchel. "Sequence and comparative analysis of Lactococcus lactis c2 dairy bacteriphages with different thermal inactivation". 2011.
  6. Witold Kot; Lars Hestbjerg Hansen; Horst Neve; Karin Hammer; Per D. Pedersen; Søren Johannes Sørensen; Knut J. Heller; Finn Vogensen. "Sequence and comparative analysis of Leuconostoc dairy bacteriophages". 2011.
  7. K. Boye; S. Pulis; Lars Hestbjerg Hansen; Søren Johannes Sørensen; Henrik T. Westh. "Sequence of a SCCmec type VII (former VT) found in Danish ST8-t024-PVLneg CA-MRSA". 2011.
  8. Jonas Stenløkke Madsen; Anders Norman; Mette Burmølle; Lars Hestbjerg Hansen; Søren Johannes Sørensen. "Characterization of pIC13_78, a biofilm enabling plasmid". 2011.
  9. Lili Li; Lasse Bergmark; Waleed Abu Al-Soud; Lars Hestbjerg Hansen; Anders Norman; Søren Johannes Sørensen. "Diversity of cultural and uncultrural Pseudomonas in an Urban Waste Filed Trial". 2010.
  10. Peter Nikolai Holmsgaard; PHB Poulsen; SC Hede; Waleed Abu Al-Soud; Lars Hestbjerg Hansen; Søren Johannes Sørensen. "Bias in Nycodenz extraction from bulk soil analysed by amplicon high throughput sequencing". 2010.
  11. Anders Norman; Lili Li; Lars Hestbjerg Hansen; Søren Johannes Sørensen. "Metamobilomics - Expanding the environmental mobilome with high throughput sequencing". 2010.
  12. Lili Li; Lasse Bergmark; Waleed Abu Al-Soud; Anders Norman; Lars Hestbjerg Hansen; Søren Johannes Sørensen. "The Diversity of cultural and uncultrural Pseudomonas in an Urban Waste Field Trial". 2010.
  13. Lasse Bergmark; Mette Burmølle; Lars Hestbjerg Hansen; Waleed Abu Al-Soud; Søren Johannes Sørensen. "A highly selective quantitative polymerase chain reactionprotocol for Burkholderia and Pseudomonas bacteria tested in soil". 2010.
  14. Peter Nikolai Holmsgaard; Pernille Hasse Busk Poulsen; SC. Hede; Waleed Abu Al-Soud; Lars Hestbjerg Hansen; Søren Johannes Sørensen. "Bias in Nycodenz extraction from bulk soil analysed by amplicon high throughput sequencing". 2010.
  15. Jørgen Leisner; Martin Asser Hansen; Marianne Halberg Larsen; Hanne Ingmer; Lars Hestbjerg Hansen; Søren Johannes Sørensen. "The lactic acid bacterium, Carnobacterium maltaromaticum possess a diverse range of potential virulence genes some of which are related to similar genes in Listeria monocytogenes". 2010.
  16. Leise Riber; Mette Burmølle; Lars Hestbjerg Hansen; Søren Johannes Sørensen. "Centre for Anti-resistance; Limiting the occurrence of antimicrobial resistance through targeted interventions directed at plasmid transfer and stability". 2010.
  17. H. Farnelid; A. Andersson; S. Bertilsson; Waleed Abu Al-Soud; Lars Hestbjerg Hansen; Søren Johannes Sørensen; Hagström; Lasse Riemann. "The nitrogenase gene pool in surface waters of the global ocean is dominated by genes of non-cyanobacteria". 2010.
  18. Pernille Hasse Busk Poulsen; Waleed Abu Al-Soud; Lars Hestbjerg Hansen; Jakob Magid; Søren Johannes Sørensen. "Investigation of prokaryotic diversity in an urban waste field trial by high throughput sequencing". 2009.
Journal article
  1. Frederik Cold; Camilla Kara Svensson; Alice Højer Christensen; Stig Günther; Andreas Munk Petersen; Lars Hestbjerg Hansen; Morten Helms. "Successful treatment of Clostridioidesdifficile infection with single-donorfaecal microbiota transplantation capsules". Danish Medical Journal 69 2 (2022): https://curis.ku.dk/portal/en/publications/successful-treatment-of-clostridioidesdifficile-infection-with-singledonorfaecal-microbiota-transplantation-capsules(785dd0b4-ed99-485b-ae82-e8f85892d6b8).html.
  2. Frederik Cold; Camilla Kara Svensson; Andreas Munk Petersen; Lars Hestbjerg Hansen; Morten Helms. "Long-Term Safety Following Faecal Microbiota Transplantation as a Treatment for Recurrent Clostridioides difficile Infection Compared with Patients Treated with a Fixed Bacterial Mixture". Cells 11 3 (2022): https://curis.ku.dk/portal/en/publications/longterm-safety-following-faecal-microbiota-transplantation-as-a-treatment-for-recurrent-clostridioides-difficile-infection-compared-with-patients-treated-with-a-fixed-bacterial-mixture(02f3b067-4ac2-444b-bf2d-af.
    10.3390/cells11030435
  3. Laura Milena Forero-junco; Katrine Wacenius Skov Alanin; Amaru Miranda Djurhuus; Witold Kot; Alex Gobbi; Lars Hestbjerg Hansen. "Bacteriophages Roam the Wheat Phyllosphere". Viruses 14 2 (2022): https://curis.ku.dk/portal/en/publications/bacteriophages-roam-the-wheat-phyllosphere(1a9f61d2-e7e5-46b7-a962-f67a103fb0ef).html.
    10.3390/v14020244
  4. Frederik Cold; Camilla Kara Svensson; Alice Hojer Christensen; Stig Gunther; Andreas Munk Petersen; Lars Hestbjerg Hansen; Morten Helms. "Successful treatment of Clostridioides difficile infection with single-donor faecal microbiota transplantation capsules". Danish Medical Journal 69 2 (2022): https://curis.ku.dk/portal/en/publications/successful-treatment-of-clostridioides-difficile-infection-with-singledonor-faecal-microbiota-transplantation-capsules(7a351f94-0b50-4c26-a18d-9507d22d9477).html.
  5. Nikoline S. Olsen; Katrine Johansen Nielsen; Maja Plöger; Witold Kot; Lars Hestbjerg Hansen. "Enterococcus phage Nonaheksakonda infecting clinical isolates of Enterococcus faecalis represents a new lineage in the family Siphoviridae". Archives of Virology (2021): https://doi.org/10.1007/s00705-020-04905-y.
    10.1007/s00705-020-04905-y
  6. Patrick D. Browne; Frederik Cold; Andreas Munk Petersen; Sofie Ingdam Halkjær; Alice Højer Christensen; Stig Günther; Lars Hestbjerg Hansen. "Engraftment of strictly anaerobic oxygen-sensitive bacteria in irritable bowel syndrome patients following fecal microbiota transplantation does not improve symptoms". Gut Microbes 13 1 (2021): https://curis.ku.dk/portal/en/publications/engraftment-of-strictly-anaerobic-oxygensensitive-bacteria-in-irritable-bowel-syndrome-patients-following-fecal-microbiota-transplantation-does-not-improve-symptoms(fb1b14df-5ba0-4d9e-bfe3-f82843c5f8b2).html.
    10.1080/19490976.2021.1927635
  7. Tue Nielsen; Mengistu Fentahun Mekureyaw; Lars Hestbjerg Hansen; Mette Haubjerg Nicolaisen; Thomas Georg Roitsch; Rosanna C. Hennessy. "Complete Genome Sequence of the Cytokinin-Producing Biocontrol Strain Pseudomonas fluorescens G20-18". Microbiology Resource Announcements 10 30 (2021): https://curis.ku.dk/portal/en/publications/complete-genome-sequence-of-the-cytokininproducing-biocontrol-strain-pseudomonas-fluorescens-g2018(64357055-785a-4c20-a920-07997d458b85).html.
    10.1128/MRA.00601-21
  8. Tue Nielsen; Benjamin Horemans; Cédric Lood; Jeroen T’Syen; Vera van Noort; Rob Lavigne; Lea Ellegaard-Jensen; et al. "The complete genome of 2,6-dichlorobenzamide (BAM) degrader Aminobacter sp. MSH1 suggests a polyploid chromosome, phylogenetic reassignment, and functions of plasmids". Scientific Reports 11 (2021): https://curis.ku.dk/portal/en/publications/the-complete-genome-of-26dichlorobenzamide-bam-degrader-aminobacter-sp-msh1-suggests-a-polyploid-chromosome-phylogenetic-reassignment-and-functions-of-plasmids(7de61e26-3339-484c-8cd8-c34ab57a698a).html.
    10.1038/s41598-021-98184-5
  9. Katrine Wacenius Skov Alanin; Laura Milena Forero Junco; Jacob Bruun Jørgensen; Tue Nielsen; Morten Arendt Rasmussen; Witold Kot; Lars Hestbjerg Hansen. "Metaviromes Reveal the Dynamics of Pseudomonas Host-Specific Phages Cultured and Uncultured by Plaque Assay". Viruses 13 6 (2021): https://curis.ku.dk/portal/en/publications/metaviromes-reveal-the-dynamics-of-pseudomonas-hostspecific-phages-cultured-and-uncultured-by-plaque-assay(78843576-c049-4bc4-8e2b-c756821d057b).html.
    10.3390/v13060959
  10. Christine V Hawkes; Rasmus Kjøller; Jos M Raaijmakers; Leise Riber; Svend Christensen; Simon Rasmussen; Jan H Christensen; et al. "Extension of Plant Phenotypes by the Foliar Microbiome". Annual Review of Plant Biology 72 (2021): 823-846. https://curis.ku.dk/portal/en/publications/extension-of-plant-phenotypes-by-the-foliar-microbiome(e7240586-37cf-4087-be36-6aac3a8d7812).html.
    10.1146/annurev-arplant-080620-114342
  11. M. V. Prosberg; H. Kringel; J. S. Kapel; B. S. Kapel; Brian Lund Fredensborg; A. M. Petersen; Lars Hestbjerg Hansen; et al. "Pre-clinical evaluation of the effect of co-medication with antibiotics and oral steroids in Gottingen Minipigs on the biological activity of the probiotic medicinal product TSO (Trichuris suis ova)". Parasitology Research 120 (2021): 743-746. https://curis.ku.dk/portal/en/publications/preclinical-evaluation-of-the-effect-of-comedication-with-antibiotics-and-oral-steroids-in-gottingen-minipigs-on-the-biological-activity-of-the-probiotic-medicinal-product-tso-trichuris-suis-ova(e2a8a4cb-ce34-4f6.
    10.1007/s00436-020-07004-8
  12. Katrine Wacenius Skov Alanin; Tue Sparholt Jørgensen; Patrick D. Browne; Bent Petersen; Leise Riber; Witold Kot; Lars Hestbjerg Hansen. "An improved direct metamobilome approach increases the detection of larger-sized circular elements across kingdoms". Plasmid 115 (2021): https://curis.ku.dk/portal/en/publications/an-improved-direct-metamobilome-approach-increases-the-detection-of-largersized-circular-elements-across-kingdoms(4334e49c-7323-466f-b00d-831a393de367).html.
    10.1016/j.plasmid.2021.102576
  13. Lucas P. P. Braga; Felipe H. Coutinho; Deyvid E. Amgarten; Witold Kot; Lars Hestbjerg Hansen; Joao C. Setubal; Laurent Philippot. "Novel virocell metabolic potential revealed in agricultural soils by virus-enriched soil metagenome analysis". Environmental Microbiology Reports 13 3 (2021): 348-354. https://curis.ku.dk/portal/en/publications/novel-virocell-metabolic-potential-revealed-in-agricultural-soils-by-virusenriched-soil-metagenome-analysis(1f4b3986-f96b-48ec-a95b-f0b87fc225cc).html.
    10.1111/1758-2229.12939
  14. Valentine Cyriaque; Jonas Stenløkke Madsen; Laurence Fievez; Baptiste Leroy; Lars Hestbjerg Hansen; Fabrice Bureau; Søren Johannes Sørensen; Ruddy Wattiez. "Lead Drives Complex Dynamics of a Conjugative Plasmid in a Bacterial Community". Frontiers in Microbiology 12 (2021): https://curis.ku.dk/portal/en/publications/lead-drives-complex-dynamics-of-a-conjugative-plasmid-in-a-bacterial-community(e741fbd4-e1a0-4dc2-92fa-b2cec39eb22f).html.
    10.3389/fmicb.2021.655903
  15. Adriana M. Garcia-Lemos; Rosanna C. Hennessy; Tue Nielsen; Lars Hestbjerg Hansen; Mette Haubjerg Nicolaisen. "Complete Genome Sequence of Paenibacillus sp. Strain 37, a Plant Growth-Promoting Bacterium Isolated from the Rhizosphere of Abies nordmanniana (Nordmann Fir)". Microbiology Resource Announcements 10 8 (2021): https://curis.ku.dk/portal/en/publications/complete-genome-sequence-of-paenibacillus-sp-strain-37-a-plant-growthpromoting-bacterium-isolated-from-the-rhizosphere-of-abies-nordmanniana-nordmann-fir(6a2885c6-ba8a-4f83-8359-f6cd72b63866).html.
    10.1128/MRA.01139-19
  16. Juliet F. Nilsson; Lucas G. Castellani; Walter O. Draghi; Ezequiel G. Mogro; Daniel Wibberg; Anika Winkler; Lars Hestbjerg Hansen; et al. "Global transcriptome analysis of Rhizobium favelukesii LPU83 in response to acid stress". FEMS Microbiology Ecology 97 1 (2021): https://curis.ku.dk/portal/en/publications/global-transcriptome-analysis-of-rhizobium-favelukesii-lpu83-in-response-to-acid-stress(ce5f1ccf-82d0-4c42-a3a9-02c4c560738c).html.
    10.1093/femsec/fiaa235
  17. Dingrong Kang; Yuhong Huang; Joseph Nesme; Jakob Herschend; Samuel Jacquiod; Witold Kot; Lars Hestbjerg Hansen; Lene Lange; Søren Johannes Sørensen. "Metagenomic analysis of a keratin-degrading bacterial consortium provides insight into the keratinolytic mechanisms". Science of the Total Environment 761 (2021): https://curis.ku.dk/portal/en/publications/metagenomic-analysis-of-a-keratindegrading-bacterial-consortium-provides-insight-into-the-keratinolytic-mechanisms(95351673-9d01-4cfb-ab77-dcfeb5b285d5).html.
    10.1016/j.scitotenv.2020.143281
  18. Nathalie Nestel; Josephine D Hvass; Martin Iain Bahl; Lars Hestbjerg Hansen; Lukasz Krych; Dennis Sandris Nielsen; Lars Ove Dragsted; Henrik Munch Roager. "The gut microbiome and abiotic factors as potential determinants of postprandial glucose responses: A single-arm meal study". Frontiers in Nutrition 7 (2021): https://curis.ku.dk/portal/en/publications/the-gut-microbiome-and-abiotic-factors-as-potential-determinants-of-postprandial-glucose-responses-a-singlearm-meal-study(6d83249c-5c54-4b66-848e-1ec38b6a7b0f).html.
    10.3389/fnut.2020.594850
  19. Toke Bang-Andreasen; Mette Hansen; Lea Ellegaard-Jensen; Lars Hestbjerg Hansen; Morten Ingerslev; Regin Rønn; Carsten Suhr Jacobsen; Rasmus Kjøller. "Application of wood ash leads to strong vertical gradients in soil pH changing prokaryotic community structure in forest top soil". Scientific Reports 11 (2021): https://curis.ku.dk/portal/en/publications/application-of-wood-ash-leads-to-strong-vertical-gradients-in-soil-ph-changing-prokaryotic-community-structure-in-forest-top-soil(bf2d05d8-7c2b-4d26-96af-94748826cc12).html.
    10.1038/s41598-020-80732-0
  20. Anna Maria Alcasid Madsen; Sofie Ingdam Halkjaer; Alice Højer Christensen; Stig Guenther; Patrick D. Browne; Thomas Kallemose; Lars Hestbjerg Hansen; Andreas Munk Petersen. "The effect of faecal microbiota transplantation on abdominal pain, stool frequency, and stool form in patients with moderate-to-severe irritable bowel syndrome". Scandinavian Journal of Gastroenterology 56 7 (2021): 761-769. https://curis.ku.dk/portal/en/publications/the-effect-of-faecal-microbiota-transplantation-on-abdominal-pain-stool-frequency-and-stool-form-in-patients-with-moderatetosevere-irritable-bowel-syndrome(b0fae5b7-cd90-4dd7-9330-d41780246252).html.
    10.1080/00365521.2021.1915375
  21. G. Arjen de Groot; Stefan Geisen; E. R.Jasper Wubs; Liz Meulenbroek; Ivo Laros; L. Basten Snoek; Dennis R. Lammertsma; Lars Hestbjerg Hansen; Pieter A. Slim. "The aerobiome uncovered". Environment International 154 (2021): https://curis.ku.dk/portal/en/publications/the-aerobiome-uncovered(c3ec70e4-3cd9-4503-8f2c-66378e11d1aa).html.
    10.1016/j.envint.2021.106551
  22. Yonghui Zeng; Xihan Chen; Anne Mette Madsen; Athanasios Zervas; Tue Kjærgaard Nielsen; Adrian-Stefan Andrei; Lars Chresten Lund-Hansen; et al. "Potential Rhodopsin- and Bacteriochlorophyll-Based Dual Phototrophy in a High Arctic Glacier". mBio 11 6 (2020): https://doi.org/10.1128/mBio.02641-20.
    10.1128/mBio.02641-20
  23. Laura J. Myhill; Sophie Stolzenbach; Helena Mejer; Simon R. Jakobsen; Tina V. A. Hansen; Daniel Andersen; Susanne Brix; et al. "Fermentable Dietary Fiber Promotes Helminth Infection and Exacerbates Host Inflammatory Responses". The Journal of Immunology (2020): ji1901149-ji1901149. https://doi.org/10.4049/jimmunol.1901149.
    10.4049/jimmunol.1901149
  24. Anne Marie Høier Eriksen; Lara Puetz; Carolina Rocha; Tue K. Nielsen; Lars H. Hansen; M. Thomas P. Gilbert. "Releasing the microbes from old bones: the effect of different DNA extraction protocols on microbial community profiling". STAR: Science & Technology of Archaeological Research (2020): https://doi.org/10.1080/20548923.2020.1738115.
    10.1080/20548923.2020.1738115
  25. Patrick Denis Browne; Tue Kjærgaard Nielsen; Witold Kot; Anni Aggerholm; M Thomas P Gilbert; Lara Puetz; Morten Rasmussen; Athanasios Zervas; Lars Hestbjerg Hansen. "GC bias affects genomic and metagenomic reconstructions, underrepresenting GC-poor organisms". GigaScience (2020): https://doi.org/10.1093/gigascience/giaa008.
    10.1093/gigascience/giaa008
  26. Josué L. Castro-Mejía; Bekzod Khakimov; Lukasz Krych; Jacob Bülow; Rasmus L. Bechshøft; Grith Højfeldt; Kenneth H. Mertz; et al. "Physical fitness in community-dwelling older adults is linked to dietary intake, gut microbiota, and metabolomic signatures". Aging Cell 19 3 (2020): https://curis.ku.dk/portal/en/publications/physical-fitness-in-communitydwelling-older-adults-is-linked-to-dietary-intake-gut-microbiota-and-metabolomic-signatures(0c909216-f1f2-4a37-ab86-6baa171907be).html.
    10.1111/acel.13105
  27. Aya Brown Kav; Roye Rozov; David Bogumil; Søren Johannes Sørensen; Lars Hestbjerg Hansen; Itai Benhar; Eran Halperin; Ron Shamir; Itzhak Mizrahi. "Unravelling plasmidome distribution and interaction with its hosting microbiome". Environmental Microbiology 22 1 (2020): 32-44. https://curis.ku.dk/portal/en/publications/unravelling-plasmidome-distribution-and-interaction-with-its-hosting-microbiome(c64d07b1-d127-422a-b982-29dff5f1be35).html.
    10.1111/1462-2920.14813
  28. Rebekka Thøgersen; Josué L. Castro-Mejía; Ulrik Kræmer Sundekilde; Lars Hestbjerg Hansen; Nicola Gray; Gunter Kuhnle; Niklas Rye Jørgensen; et al. "Inulin and milk mineral fortification of a pork sausage exhibits distinct effects on the microbiome and biochemical activity in the gut of healthy rats". Food Chemistry 331 (2020): https://curis.ku.dk/portal/en/publications/inulin-and-milk-mineral-fortification-of-a-pork-sausage-exhibits-distinct-effects-on-the-microbiome-and-biochemical-activity-in-the-gut-of-healthy-rats(d876ebdb-7fa5-4474-a3b2-cede0d6046b6).html.
    10.1016/j.foodchem.2020.127291
  29. Susana S. Santos; Anne Schöler; Tue Nielsen; Lars Hestbjerg Hansen; Michael Schloter; Anne Winding. "Land use as a driver for protist community structure in soils under agricultural use across Europe". Science of the Total Environment 717 (2020): https://curis.ku.dk/portal/en/publications/land-use-as-a-driver-for-protist-community-structure-in-soils-under-agricultural-use-across-europe(7f56fe92-a4a7-43e9-846c-02c8d4f80ca3).html.
    10.1016/j.scitotenv.2020.137228
  30. Aviaja L. Hauptmann; Petronela Paulová; Lars Hestbjerg Hansen; Thomas Sicheritz-Ponten; Gert Mulvad; Dennis Sandris Nielsen. "Microbiota in foods from Inuit traditional hunting". PLoS ONE 15 1 (2020): https://curis.ku.dk/portal/en/publications/microbiota-in-foods-from-inuit-traditional-hunting(125662e8-ad36-4b53-8946-2b4f4545e27a).html.
    10.1371/journal.pone.0227819
  31. Ifigeneia Kyrkou; Alexander Byth Carstens; Lea Ellegaard-Jensen; Witold Kot; Athanasios Zervas; Amaru Miranda Djurhuus; Horst Neve; et al. "Isolation and characterisation of novel phages infecting Lactobacillus plantarum and proposal of a new genus, "Silenusvirus"". Scientific Reports 10 1 (2020): https://curis.ku.dk/portal/en/publications/isolation-and-characterisation-of-novel-phages-infecting-lactobacillus-plantarum-and-proposal-of-a-new-genus-silenusvirus(df4fce37-8015-444b-810b-12da2675858e).html.
    10.1038/s41598-020-65366-6
  32. Lucas P. P. Braga; Ayme Spor; Witold Kot; Marie-Christine Breuil; Lars Hestbjerg Hansen; Joao C. Setubal; Laurent Philippot. "Impact of phages on soil bacterial communities and nitrogen availability under different assembly scenarios". Microbiome 8 1 (2020): https://curis.ku.dk/portal/en/publications/impact-of-phages-on-soil-bacterial-communities-and-nitrogen-availability-under-different-assembly-scenarios(b0b86d20-c7fb-43f5-9f53-aeb46c060526).html.
    10.1186/s40168-020-00822-z
  33. Muhammad Zohaib Anwar; Athanasios Zervas; Lars Hestbjerg Hansen; Gary Barker; Alexandre Magno Anesio; Carsten Suhr Jacobsen. "Complete Genome and Plasmid Sequences of Salmonella enterica subsp. enterica Serovar Enteritidis PT1, Obtained from the Salmonella Reference Laboratory at Public Health England, Colindale, United Kingdom". Microbiology Resource Announcements 9 2 (2020): https://curis.ku.dk/portal/en/publications/complete-genome-and-plasmid-sequences-of-salmonella-enterica-subsp-enterica-serovar-enteritidis-pt1-obtained-from-the-salmonella-reference-laboratory-at-public-health-england-colindale-united-kingdom(2d2f317b-447.
    10.1128/MRA.01064-19
  34. Kate Reddington; David Eccles; Justin O'Grady; Devin M. Drown; Lars Hestbjerg Hansen; Tue Nielsen; Anne-Lise Ducluzeau; et al. "Metagenomic analysis of planktonic riverine microbial consortia using nanopore sequencing reveals insight into river microbe taxonomy and function". GigaScience 9 6 (2020): https://curis.ku.dk/portal/en/publications/metagenomic-analysis-of-planktonic-riverine-microbial-consortia-using-nanopore-sequencing-reveals-insight-into-river-microbe-taxonomy-and-function(64e4b6f1-b0ab-409c-abdb-1da16934476e).html.
    10.1093/gigascience/giaa053
  35. Ole Hylling; Alexander Byth Carstens; Witold Kot; Martin Hansen; Horst Neve; Charles M.A.P. Franz; Anders Johansen; Lea Ellegaard-Jensen; Lars Hestbjerg Hansen. "Two novel bacteriophage genera from a groundwater reservoir highlight subsurface environments as underexplored biotopes in bacteriophage ecology". Scientific Reports 10 1 (2020): https://curis.ku.dk/portal/en/publications/two-novel-bacteriophage-genera-from-a-groundwater-reservoir-highlight-subsurface-environments-as-underexplored-biotopes-in-bacteriophage-ecology(d22887dc-01e4-4927-9c6f-bb884ddd0109).html.
    10.1038/s41598-020-68389-1
  36. Adriana Garcia; Alex Gobbi; Mette Haubjerg Nicolaisen; Lars Hestbjerg Hansen; Thomas Georg Roitsch; Bjarke Veierskov; Ole Nybroe. "Under the Christmas Tree". Frontiers in Microbiology 11 (2020): https://curis.ku.dk/portal/en/publications/under-the-christmas-tree(1236dbc5-0f51-476b-b762-99b0890b839e).html.
    10.3389/fmicb.2020.00198
  37. Alex Gobbi; Ifigeneia Kyrkou; Elisa Filippi; Lea Ellegaard-Jensen; Lars Hestbjerg Hansen. "Seasonal epiphytic microbial dynamics on grapevine leaves under biocontrol and copper fungicide treatments". Scientific Reports 10 1 (2020): https://curis.ku.dk/portal/en/publications/seasonal-epiphytic-microbial-dynamics-on-grapevine-leaves-under-biocontrol-and-copper-fungicide-treatments(ceacaf3c-35dd-4b26-baba-e0f9b4ba7092).html.
    10.1038/s41598-019-56741-z
  38. Monica Oyuela Aguilar; Alex Gobbi; Patrick D. Browne; Lea Ellegaard-Jensen; Lars Hestbjerg Hansen; Liliana Semorile; Mariano Pistorio. "Influence of vintage, geographic location and cultivar on the structure of microbial communities associated with the grapevine rhizosphere in vineyards of San Juan Province, Argentina". PLoS ONE 15 12 (2020): https://curis.ku.dk/portal/en/publications/influence-of-vintage-geographic-location-and-cultivar-on-the-structure-of-microbial-communities-associated-with-the-grapevine-rhizosphere-in-vineyards-of-san-juan-province-argentina(3563e816-f477-4dc9-bffd-db6ffd.
    10.1371/journal.pone.0243848
  39. Julie Stenberg Pedersen; Alexander Byth Carstens; Amaru Miranda Djurhuus; Witold Kot; Horst Neve; Lars Hestbjerg Hansen. "Pectobacterium Phage Jarilo Displays Broad Host Range and Represents a Novel Genus of Bacteriophages Within the Family Autographiviridae". PHAGE: Therapy, Applications, and Research 1 4 (2020): 237-244. https://curis.ku.dk/portal/en/publications/pectobacterium-phage-jarilo-displays-broad-host-range-and-represents-a-novel-genus-of-bacteriophages-within-the-family-autographiviridae(f615d075-e382-4c25-85cd-a20f9952de7e).html.
    10.1089/phage.2020.0037
  40. Julie Stenberg Pedersen; Witold Kot; Maja Plöger; René Lametsch; Horst Neve; Charles M.A.P Franz; Lars Hestbjerg Hansen. "A Rare, Virulent Clostridium perfringens Bacteriophage Susfortuna Is the First Isolated Bacteriophage in a New Viral Genus". PHAGE: Therapy, Applications, and Research 1 4 (2020): 230-236. https://curis.ku.dk/portal/en/publications/a-rare-virulent-clostridium-perfringens-bacteriophage-susfortuna-is-the-first-isolated-bacteriophage-in-a-new-viral-genus(abccf37a-7adb-4fd0-953c-3abddb0a6463).html.
    10.1089/phage.2020.0038
  41. Amaru Miranda Djurhuus; Alexander Byth Carstens; Horst Neve; Witold Kot; Lars Hestbjerg Hansen. "Two New Dickeya dadantii Phages with Odd Growth Patterns Expand the Diversity of Phages Infecting Soft Rot Pectobacteriaceae". PHAGE: Therapy, Applications, and Research 1 4 (2020): 251-259. https://curis.ku.dk/portal/en/publications/two-new-dickeya-dadantii-phages-with-odd-growth-patterns-expand-the-diversity-of-phages-infecting-soft-rot-pectobacteriaceae(854ad030-90f2-421c-9eca-df1876e5125f).html.
    10.1089/phage.2020.0039
  42. Nikoline S. Olsen; Laura Forero-Junco; Witold Kot; Lars Hestbjerg Hansen. "Exploring the Remarkable Diversity of Culturable Escherichia coli Phages in the Danish Wastewater Environment". Viruses 12 9 (2020): https://curis.ku.dk/portal/en/publications/exploring-the-remarkable-diversity-of-culturable-escherichia-coli-phages-in-the-danish-wastewater-environment(d043cecb-7fbc-4190-9cb8-ba4d61d6acec).html.
    10.3390/v12090986
  43. Maria Julia Estrella; Maria Florencia Fontana; Liz Marjory Cumpa Velasquez; Gonzalo Arturo Torres Tejerizo; Luis Diambra; Lars Hestbjerg Hansen; Mariano Pistorio; Analia Ines Sannazzaro. "Mesorhizobium intechi sp. nov. isolated from nodules of Lotus tenuis in soils of the Flooding Pampa, Argentina". Systematic and Applied Microbiology 43 1 (2020): https://curis.ku.dk/portal/en/publications/mesorhizobium-intechi-sp-nov-isolated-from-nodules-of-lotus-tenuis-in-soils-of-the-flooding-pampa-argentina(1fcfa533-728e-4a12-bae9-ad522aa50c3c).html.
    10.1016/j.syapm.2019.126044
  44. Torben Sølbeck Rasmussen; Caroline Mentzel; Witold Kot; Josué L. Castro-Mejía; Simone Zuffa; Jonathan Richard Swann; Lars Hestbjerg Hansen; et al. "Faecal virome transplantation decreases symptoms of type 2 diabetes and obesity in a murine model". Gut 69 12 (2020): 2122-2130. https://curis.ku.dk/portal/en/publications/faecal-virome-transplantation-decreases-symptoms-of-type-2-diabetes-and-obesity-in-a-murine-model(471fd18e-b7c8-4b7f-a2be-b1ab5bec2402).html.
    10.1136/gutjnl-2019-320005
  45. Lea Ellegaard-Jensen; Morten Dencker Schostag; Mahdi Nikbakht Fini; Nora Badawi; Alex Gobbi; Jens Aamand; Lars Hestbjerg Hansen. "Bioaugmented Sand Filter Columns Provide Stable Removal of Pesticide Residue From Membrane Retentate". Frontiers in Water 2 (2020): https://curis.ku.dk/portal/en/publications/bioaugmented-sand-filter-columns-provide-stable-removal-of-pesticide-residue-from-membrane-retentate(ad937ffd-9a71-478c-88e5-8ae151a699b8).html.
    10.3389/frwa.2020.603567
  46. Jacob B. Jørgensen; Amaru M. Djurhuus; Alexander Byth Carstens; Witold Kot; Horst Neve; Cindy E. Morris; Lars Hestbjerg Hansen. "Presentation of Three Novel Tailed Phages Targeting Multiple Strains of Pseudomonas syringae". PHAGE: Therapy, Applications, and Research 1 4 (2020): 245-250. https://curis.ku.dk/portal/en/publications/presentation-of-three-novel-tailed-phages-targeting-multiple-strains-of-pseudomonas-syringae(3f3df2d1-19a0-4ff6-93a5-40aba199fcc5).html.
    10.1089/phage.2020.0040
  47. Anne Marie Høier Eriksen; Tue Nielsen; Henning Matthiesen; Christian Carøe; Lars Hestbjerg Hansen; David John Gregory; Gordon Turner-Walker; Matthew Collins; M Thomas P Gilbert. "Bone biodeterioration - The effect of marine and terrestrial depositional environments on early diagenesis and bone bacterial community". PLoS ONE 15 10 October (2020): https://curis.ku.dk/portal/en/publications/bone-biodeterioration--the-effect-of-marine-and-terrestrial-depositional-environments-on-early-diagenesis-and-bone-bacterial-community(15ce0dda-fd9f-476c-8499-47d50252a4a0).html.
    10.1371/journal.pone.0240512
  48. Nikoline S. Olsen; Niels Bohse Hendriksen; Lars Hestbjerg Hansen; Witold Kot. "A New High-Throughput Screening Method for Phages". PHAGE: Therapy, Applications, and Research 1 3 (2020): 137-148. https://curis.ku.dk/portal/en/publications/a-new-highthroughput-screening-method-for-phages(a3bbfa9a-cc04-42fb-b148-812ea93d1f55).html.
    10.1089/phage.2020.0016
  49. Witold Kot; Nikoline S. Olsen; Tue Nielsen; Geoffrey Hutinet; Valerie de Crecy-Lagard; Liang Cui; Peter C. Dedon; et al. "Detection of preQ0 deazaguanine modifications in bacteriophage CAjan DNA using Nanopore sequencing reveals same hypermodification at two distinct DNA motifs". Nucleic Acids Symposium Series 48 18 (2020): 10383-10396. https://curis.ku.dk/portal/en/publications/detection-of-preq0-deazaguanine-modifications-in-bacteriophage-cajan-dna-using-nanopore-sequencing-reveals-same-hypermodification-at-two-distinct-dna-motifs(ae55dcef-29b9-4078-9992-6f86e8759cd0).html.
    10.1093/nar/gkaa735
  50. Ole Hylling; M. Nikbakht Fini; Lea Ellegaard-Jensen; Jens Muff; Henrik Tækker Madsen; Jens Aamand; Lars Hestbjerg Hansen. "A novel hybrid concept for implementation in drinking water treatment targets micropollutant removal by combining membrane filtration with biodegradation". Science of the Total Environment 694 (2019): 1-12. https://curis.ku.dk/portal/en/publications/a-novel-hybrid-concept-for-implementation-in-drinking-water-treatment-targets-micropollutant-removal-by-combining-membrane-filtration-with-biodegradation(efc6a1a7-8fd1-412e-bdaa-647d2644c85d).html.
    10.1016/j.scitotenv.2019.133710
  51. Athanasios Zervas; Yonghui Zeng; Anne Mette Madsen; Lars Hestbjerg Hansen. "Genomics of Aerobic Photoheterotrophs in Wheat Phyllosphere Reveals Divergent Evolutionary Patterns of Photosynthetic Genes in Methylobacterium spp". Genome Biology and Evolution 11 10 (2019): 2895-2908. https://curis.ku.dk/portal/en/publications/genomics-of-aerobic-photoheterotrophs-in-wheat-phyllosphere-reveals-divergent-evolutionary-patterns-of-photosynthetic-genes-in-methylobacterium-spp(5a3d4e09-09a6-4373-a1ee-9685b8d493bb).html.
    10.1093/gbe/evz204
  52. Giovanni Del Frari; Alex Gobbi; Marie Rønne Aggerbeck; Helena Oliveira; Lars Hestbjerg Hansen; Ricardo Boavida Ferreira. "Characterization of the Wood Mycobiome of Vitis vinifera in a Vineyard Affected by Esca. Spatial Distribution of Fungal Communities and Their Putative Relation With Leaf Symptoms". Frontiers in Plant Science 10 (2019): https://curis.ku.dk/portal/en/publications/characterization-of-the-wood-mycobiome-of-vitis-vinifera-in-a-vineyard-affected-by-esca-spatial-distribution-of-fungal-communities-and-their-putative-relation-with-leaf-symptoms(7e83c3e6-421c-4b89-8a09-55cc31055b.
    10.3389/fpls.2019.00910
  53. Ifigeneia Kyrkou; Alexander Byth Carstens; Lea Ellegaard-Jensen; Witold Kot; Athanasios Zervas; Amaru Miranda Djurhuus; Horst Neve; Martin Hansen; Lars Hestbjerg Hansen. "Expanding the Diversity of Myoviridae Phages Infecting Lactobacillus plantarum - A Novel Lineage of Lactobacillus Phages Comprising Five New Members". Viruses 11 7 (2019): https://curis.ku.dk/portal/en/publications/expanding-the-diversity-of-myoviridae-phages-infecting-lactobacillus-plantarum-a-novel-lineage-of-lactobacillus-phages-comprising-five-new-members(5f9ae474-bcda-4b91-ad1b-4965bf9aefad).html.
    10.3390/v11070611
  54. Alexander Byth Carstens; Amaru Miranda Djurhuus; Witold Kot; Lars Hestbjerg Hansen. "A novel six-phage cocktail reduces Pectobacterium atrosepticum soft rot infection in potato tubers under simulated storage conditions". FEMS Microbiology Letters 366 9 (2019): 1-8. https://curis.ku.dk/portal/en/publications/a-novel-sixphage-cocktail-reduces-pectobacterium-atrosepticum-soft-rot-infection-in-potato-tubers-under-simulated-storage-conditions(ea4ff698-5843-4c9e-b26f-169a3af47d0f).html.
    10.1093/femsle/fnz101
  55. Tue Sparholt Jorgensen; Bolette Lykke Holm Nielsen; Bent Petersen; Patrick D. Browne; Benni Winding Hansen; Lars Hestbjerg Hansen. "The Whole Genome Sequence and mRNA Transcriptome of the Tropical Cyclopoid Copepod Apocyclops royi". G3: Genes, Genomes, Genetics (Bethesda) 9 5 (2019): 1295-1302. https://curis.ku.dk/portal/en/publications/the-whole-genome-sequence-and-mrna-transcriptome-of-the-tropical-cyclopoid-copepod-apocyclops-royi(034d6093-457c-46e6-b600-de1cacc7407f).html.
    10.1534/g3.119.400085
  56. Tue Sparholt Jørgensen; Bent Petersen; H. Cecilie B. Petersen; Patrick D. Browne; Stefan Prost; Jonathon H. Stillman; Lars Hestbjerg Hansen; Benni Winding Hansen. "The Genome and mRNA Transcriptome of the Cosmopolitan Calanoid Copepod Acartia tonsa Dana Improve the Understanding of Copepod Genome Size Evolution". Genome Biology and Evolution 11 5 (2019): 1440-1450. https://curis.ku.dk/portal/en/publications/the-genome-and-mrna-transcriptome-of-the-cosmopolitan-calanoid-copepod-acartia-tonsa-dana-improve-the-understanding-of-copepod-genome-size-evolution(37a94831-40f5-4403-99a4-918a25351f03).html.
    10.1093/gbe/evz067
  57. Torben Sølbeck Rasmussen; Liv de Vries; Witold Kot; Lars Hestbjerg Hansen; Josué L. Castro-Mejía; Finn Kvist Vogensen; Axel Kornerup Hansen; Dennis Sandris Nielsen. "Mouse Vendor Influence on the Bacterial and Viral Gut Composition Exceeds the Effect of Diet". Viruses (2019): https://www.mdpi.com/1999-4915/11/5/435.
    10.3390/v11050435
  58. Frederik Cold; Patrick D. Browne; Stig Günther; S I Halkjaer; A M Petersen; Z Al-Gibouri; Lars Hestbjerg Hansen; A H Christensen. "Multidonor FMT capsules improve symptoms and decrease fecal calprotectin in ulcerative colitis patients while treated - an open-label pilot study". Scandinavian Journal of Gastroenterology 54 3 (2019): 289-296. https://curis.ku.dk/portal/en/publications/multidonor-fmt-capsules-improve-symptoms-and-decrease-fecal-calprotectin-in-ulcerative-colitis-patients-while-treated--an-openlabel-pilot-study(4fdcda3d-194d-4b87-acc6-f0110712b5d9).html.
    10.1080/00365521.2019.1585939
  59. Diana R. Alves; Jonathan Nzakizwanayo; Cinzia Dedi; Chara Olympiou; Aurélie Hanin; Witold Kot; Lars Hestbjerg Hansen; et al. "Genomic and Ecogenomic Characterization of Proteus mirabilis Bacteriophages". Frontiers in Microbiology 10 (2019): 1-14. https://curis.ku.dk/portal/en/publications/genomic-and-ecogenomic-characterization-of-proteus-mirabilis-bacteriophages(74557645-4fee-480f-bd62-5fb9fd4ce901).html.
    10.3389/fmicb.2019.01783
  60. Shahid Sher; Abdul Rehman; Lars Hestbjerg Hansen; Tue Nielsen. "Complete Genome Sequences of Highly Arsenite-Resistant Bacteria Brevibacterium sp. Strain CS2 and Micrococcus luteus AS2". Microbiology Resource Announcements 8 31 (2019): https://curis.ku.dk/portal/en/publications/complete-genome-sequences-of-highly-arseniteresistant-bacteria-brevibacterium-sp-strain-cs2-and-micrococcus-luteus-as2(26cedf91-6dd7-4aa9-806c-3be0f0775b49).html.
    10.1128/MRA.00531-19
  61. Thi Phi Oanh Nguyen; Martin Asser Hansen; Lars Hestbjerg Hansen; Benjamin Horemans; Søren Johannes Sørensen; René De Mot; Dirk Springael. "Intra- and inter-field diversity of 2,4-dichlorophenoxyacetic acid-degradative plasmids and their tfd catabolic genes in rice fields of the Mekong delta in Vietnam". FEMS Microbiology Ecology 95 1 (2019): 1-11. https://curis.ku.dk/portal/en/publications/intra-and-interfield-diversity-of-24dichlorophenoxyacetic-aciddegradative-plasmids-and-their-tfd-catabolic-genes-in-rice-fields-of-the-mekong-delta-in-vietnam(55f07db5-db24-4fcb-bd53-962a41481967).html.
    10.1093/femsec/fiy214
  62. Giovanni Del Frari; Alex Gobbi; Marie Rønne Aggerbeck; Helena Oliveira; Lars Hestbjerg Hansen; Ricardo Boavida Ferreira. "Fungicides and the Grapevine Wood Mycobiome". Frontiers in Plant Science 10 (2019): https://curis.ku.dk/portal/en/publications/fungicides-and-the-grapevine-wood-mycobiome(6201deec-3dfb-404f-9909-61843f17726e).html.
    10.3389/fpls.2019.01405
  63. Alexander B. Carstens; Amaru M. Djurhuus; Witold Kot; Deborah Jacobs-Sera; Graham F. Hatfull; Lars Hestbjerg Hansen. "Unlocking the Potential of 46 New Bacteriophages for Biocontrol of Dickeya Solani". Viruses (2018): http://www.mdpi.com/1999-4915/10/11/621.
    10.3390/v10110621
  64. Carsten Suhr Jacobsen; Tue Nielsen; Jan Vester; Peter Stougaard; Jeppe Lund Nielsen; Jana Voriskova; Anne Winding; et al. "Inter-laboratory testing of the effect of DNA blocking reagent G2 on DNA extraction from low-biomass clay samples". Scientific Reports 8 (2018): 1-6. https://curis.ku.dk/portal/en/publications/interlaboratory-testing-of-the-effect-of-dna-blocking-reagent-g2-on-dna-extraction-from-lowbiomass-clay-samples(0d6f0bce-dbf6-46a1-a144-e6c4140d86f1).html.
    10.1038/s41598-018-24082-y
  65. Nina Brandt; Dorota Kotowska; Caroline M. Kristensen; Jesper Olesen; Ditte O. Lützhøft; Jens Frey Halling; Martin Hansen; et al. "The impact of exercise training and resveratrol supplementation on gut microbiota composition in high-fat diet fed mice". Physiological Reports 6 20 (2018): 1-11. https://curis.ku.dk/portal/en/publications/the-impact-of-exercise-training-and-resveratrol-supplementation-on-gut-microbiota-composition-in-highfat-diet-fed-mice(e3e37541-5909-467f-9597-6c40f33dd351).html.
    10.14814/phy2.13881
  66. Peter Nikolai Holmsgaard; Simone Dealtry; Vincent Dunon; Holger Heuer; Lars Hestbjerg Hansen; Dirk Springael; Kornelia Smalla; Leise Riber; Søren Johannes Sørensen. "Response of the bacterial community in an on-farm biopurification system, to which diverse pesticides are introduced over an agricultural season". Environmental Pollution 229 (2017): 854-862. https://curis.ku.dk/portal/en/publications/response-of-the-bacterial-community-in-an-onfarm-biopurification-system-to-which-diverse-pesticides-are-introduced-over-an-agricultural-season(907c1c6f-b882-4689-9c83-2936999a6e4f).html.
    10.1016/j.envpol.2017.07.026
  67. Tue Nielsen; Morten Rasmussen; Sandrine Demanèche; Sébastien Cecillon; Timothy M. Vogel; Lars Hestbjerg Hansen. "Evolution of Sphingomonad Gene Clusters Related to Pesticide Catabolism Revealed by Genome Sequence and Mobilomics of Sphingobium herbicidovorans MH". Genome Biology and Evolution 9 9 (2017): 2477-2490. https://curis.ku.dk/portal/en/publications/evolution-of-sphingomonad-gene-clusters-related-to-pesticide-catabolism-revealed-by-genome-sequence-and-mobilomics-of-sphingobium-herbicidovorans-mh(4590d912-9aa5-417c-99df-a0809bd89e00).html.
    10.1093/gbe/evx185
  68. Tue Nielsen; Alexander Byth Carstens; Patrick Browne; René Lametsch; Horst Neve; Witold Kot; Lars Hestbjerg Hansen. "The first characterized phage against a member of the ecologically important sphingomonads reveals high dissimilarity against all other known phages". Scientific Reports 7 (2017): https://curis.ku.dk/portal/en/publications/the-first-characterized-phage-against-a-member-of-the-ecologically-important-sphingomonads-reveals-high-dissimilarity-against-all-other-known-phages(f68d60c0-4664-4da0-a088-7ffa8b9b412a).html.
    10.1038/s41598-017-13911-1
  69. Mònica Escolà Casas; Tue Nielsen; Witold Kot; Lars Hestbjerg Hansen; Anders Johansen; Kai Bester. "Degradation of mecoprop in polluted landfill leachate and waste water in a moving bed biofilm reactor". Water Research 121 (2017): 213-220. https://curis.ku.dk/portal/en/publications/degradation-of-mecoprop-in-polluted-landfill-leachate-and-waste-water-in-a-moving-bed-biofilm-reactor(799a94e1-e039-42a8-bbc8-4d67a87d47ff).html.
    10.1016/j.watres.2017.05.031
  70. Tue Sparholt Jørgensen; Martin Asser Hansen; Zhuofei Xu; Michael A. Tabak; Søren Johannes Sørensen; Lars Hestbjerg Hansen. "Plasmids, viruses, and other circular elements in rat gut". (2017): https://curis.ku.dk/portal/en/publications/plasmids-viruses-and-other-circular-elements-in-rat-gut(76f19569-e94c-4b7c-8f10-aebc36222b0b).html.
    10.1101/143420
  71. Leise Riber; Mette Burmølle; Martin Alm; Stefan Morberg Milani; Peter Thomsen; Lars Hestbjerg Hansen; Søren Johannes Sørensen. "Enhanced plasmid loss in bacterial populations exposed to the antimicrobial compound irgasan delivered from interpenetrating polymer network silicone hydrogels". Plasmid 87-88 (2016): 72-78. https://curis.ku.dk/portal/en/publications/enhanced-plasmid-loss-in-bacterial-populations-exposed-to-the-antimicrobial-compound-irgasan-delivered-from-interpenetrating-polymer-network-silicone-hydrogels(404cdbaf-de50-4d67-acae-3e91492792e9).html.
    10.1016/j.plasmid.2016.10.001
  72. Simone Dealtry; Eman H. Nour; Peter Nikolai Holmsgaard; Guo Chun Ding; Viola Weichelt; Vincent Dunon; Holger Heuer; et al. "Exploring the complex response to linuron of bacterial communities from biopurification systems by means of cultivation-independent methods". F E M S Microbiology Ecology 92 2 (2016): https://curis.ku.dk/portal/en/publications/exploring-the-complex-response-to-linuron-of-bacterial-communities-from-biopurification-systems-by-means-of-cultivationindependent-methods(e4a69bd1-98d3-4add-a6ab-c99f566d232a).html.
    10.1093/femsec/fiv157
  73. Louise Feld; Tue Nielsen; Lars Hestbjerg Hansen; Jens Aamand; Christian Nyrop Albers. "Establishment of Bacterial Herbicide Degraders in a Rapid Sand Filter for Bioremediation of Phenoxypropionate-Polluted Groundwater". Applied and Environmental Microbiology 82 3 (2016): 878-887. https://curis.ku.dk/portal/en/publications/establishment-of-bacterial-herbicide-degraders-in-a-rapid-sand-filter-for-bioremediation-of-phenoxypropionatepolluted-groundwater(ff8d5931-e32c-4859-8e02-88b65ce6568a).html.
    10.1128/AEM.02600-15
  74. Jonas Stenløkke Madsen; Leise Riber; Witold Kot; Alrun Basfeld; Mette Burmølle; Lars Hestbjerg Hansen; Søren Johannes Sørensen. "Type 3 fimbriae encoded on plasmids are expressed from a unique promoter without affecting host motility, facilitating an exceptional phenotype that enhances conjugal plasmid transfer". P L o S One 11 9 (2016): https://curis.ku.dk/portal/en/publications/type-3-fimbriae-encoded-on-plasmids-are-expressed-from-a-unique-promoter-without-affecting-host-motility-facilitating-an-exceptional-phenotype-that-enhances-conjugal-plasmid-transfer(26af4c21-4145-43e2-b6f0-dfb55.
    10.1371/journal.pone.0162390
  75. Tossawan Jitwasinkul; Prapat Suriyaphol; Sithichoke Tangphatsornruang; Martin Asser Hansen; Lars Hestbjerg Hansen; Søren Johannes Sørensen; Chairat Permpikul; Yong Rongrungruang; Chanwit Tribuddharat. "Plasmid metagenomics reveals multiple antibiotic resistance gene classes among the gut microbiomes of hospitalised patients". Journal of Global Antimicrobial Resistance 6 (2016): 57-66. https://curis.ku.dk/portal/en/publications/plasmid-metagenomics-reveals-multiple-antibiotic-resistance-gene-classes-among-the-gut-microbiomes-of-hospitalised-patients(f94c895f-25cf-4e2a-89ec-ba20f578148c).html.
    10.1016/j.jgar.2016.03.001
  76. Saria Otani; Lars Hestbjerg Hansen; Søren Johannes Sørensen; Michael Poulsen. "Bacterial communities in termite fungus combs are comprised of consistent gut deposits and contributions from the environment". Microbial Ecology 71 1 (2016): 207-220. https://curis.ku.dk/portal/en/publications/bacterial-communities-in-termite-fungus-combs-are-comprised-of-consistent-gut-deposits-and-contributions-from-the-environment(b61c5f82-ab0a-4cc7-8fed-e08a17f90966).html.
    10.1007/s00248-015-0692-6
  77. Wenting Luo; Zhuofei Xu; Leise Riber; Lars Hestbjerg Hansen; Søren Johannes Sørensen. "Diverse gene functions in a soil mobilome". Soil Biology & Biochemistry 101 (2016): 175-183. https://curis.ku.dk/portal/en/publications/diverse-gene-functions-in-a-soil-mobilome(78d6fa61-22b3-4c53-9c00-45e1289d421c).html.
    10.1016/j.soilbio.2016.07.018
  78. Uli Klümper; Leise Riber; Arnaud Dechesne; Analía Inés Sannazzaro; Lars Hestbjerg Hansen; Søren Johannes Sørensen; Barth F. Smets. "Broad host range plasmids can invade an unexpectedly diverse fraction of a soil bacterial community". I S M E Journal 9 (2015): 934-945. https://curis.ku.dk/portal/en/publications/broad-host-range-plasmids-can-invade-an-unexpectedly-diverse-fraction-of-a-soil-bacterial-community(630a2a13-c555-4199-9c0c-19fab30ae183).html.
    10.1038/ismej.2014.191
  79. Anne Toksvig Bjerg; M.B. Sørensen; Lukasz Krych; Lars Hestbjerg Hansen; Arne Astrup; Mette Kristensen; Dennis Sandris Nielsen. "The effect of Lactobacillus paracasei subsp. paracasei L. casei W8® on blood levels of triacylglycerol is independent of colonisation". Beneficial Microbes 6 3 (2015): 263-269. https://curis.ku.dk/portal/en/publications/the-effect-of-lactobacillus-paracasei-subsp-paracasei-l-casei-w8-on-blood-levels-of-triacylglycerol-is-independent-of-colonisation(3f68c958-d88d-4c19-af5c-5a416fd54b0d).html.
    10.3920/BM2014.0033
  80. Joanito Liberti; Panagiotis Sapountzis; Lars Hestbjerg Hansen; Søren Johannes Sørensen; Rachelle Martha Marie Adams; Jacobus Boomsma. "Bacterial symbiont sharing in Megalomyrmex social parasites and their fungus-growing ant hosts". Molecular Ecology 24 12 (2015): 3151-3169. https://curis.ku.dk/portal/en/publications/bacterial-symbiont-sharing-in-megalomyrmex-social-parasites-and-their-fungusgrowing-ant-hosts(b46cfec3-ce2b-4f41-b529-d8951da6ad03).html.
    10.1111/mec.13216
  81. Tue Nielsen; Sebastian R. Sørensen; Lars Hestbjerg Hansen. "Draft Genome Sequence of Isoproturon-Mineralizing Sphingomonas sp. SRS2, Isolated from an Agricultural Field in the United Kingdom". Genome Announcements 3 3 (2015): https://curis.ku.dk/portal/en/publications/draft-genome-sequence-of-isoproturonmineralizing-sphingomonas-sp-srs2-isolated-from-an-agricultural-field-in-the-united-kingdom(99493478-911e-4f55-a791-43d2e64a946e).html.
    10.1128/genomeA.00569-15
  82. Alf Skovgaard; Josué L. Castro-Mejía; Lars Hestbjerg Hansen; Dennis Sandris Nielsen. "Host-specific and pH-dependent microbiomes of copepods in an extensive rearing system". PLOS ONE 10 7 (2015): e0132516-e0132516. https://curis.ku.dk/portal/en/publications/hostspecific-and-phdependent-microbiomes-of-copepods-in-an-extensive-rearing-system(326c354f-2da1-4144-adba-d3a946fc4aa4).html.
    10.1371/journal.pone.0132516
  83. Jeroen T'Syen; Raffaella Tassoni; Lars Hestbjerg Hansen; Søren Johannes Sørensen; Baptiste Leroy; Aswini Sekhar; Ruddy Wattiez; René De Mot; Dirk Springael. "Identification of the amidase BbdA that initiates biodegradation of the groundwater micropollutant 2,6-dichlorobenzamide (BAM) in Aminobacter sp. MSH1". Environmental Science & Technology (Washington) 49 19 (2015): 11703-11713. https://curis.ku.dk/portal/en/publications/identification-of-the-amidase-bbda-that-initiates-biodegradation-of-the-groundwater-micropollutant-26dichlorobenzamide-bam-in-aminobacter-sp-msh1(2e38f5f2-5309-4a3c-abcd-5707a8096816).html.
    10.1021/acs.est.5b02309
  84. Bill Vestergaard; Lukasz Krych; Leif R. Lund; Bettina Merete Pyndt Jørgensen; Lars Hestbjerg Hansen; Henrik Elvang Jensen; Dennis Sandris Nielsen; Axel Kornerup Hansen. "Colonic lesions, cytokine profiles, and gut microbiota in plasminogen-deficient mice". Comparative Medicine 65 5 (2015): 382-397. https://curis.ku.dk/portal/en/publications/colonic-lesions-cytokine-profiles-and-gut-microbiota-in-plasminogendeficient-mice(e02a7026-330c-4692-a704-f41e8ed0e359).html.
  85. Tue Sparholt Jørgensen; Anne S. Kiil; Martin Asser Hansen; Søren Johannes Sørensen; Lars Hestbjerg Hansen. "Current strategies for mobilome research". Frontiers in Microbiology 5 (2015): https://curis.ku.dk/portal/en/publications/current-strategies-for-mobilome-research(de2289f8-d66a-4897-93b2-8494238f772c).html.
    10.3389/fmicb.2014.00750
  86. Panagiotis Sapountzis; Mariya Zhukova; Lars Hestbjerg Hansen; Søren Johannes Sørensen; Morten Schiøtt; Jacobus Boomsma. "Acromyrmex leaf-cutting ants have simple gut microbiota with nitrogen-fixing potential". Applied and Environmental Microbiology 81 16 (2015): 5527-5537. https://curis.ku.dk/portal/en/publications/acromyrmexleafcutting-ants-have-simple-gut-microbiota-with-nitrogenfixing-potential(ebfbd08c-4f7d-4723-872f-69f6954b1edc).html.
    10.1128/AEM.00961-15
  87. Pedro Farias; Christophe Esprito Santo; Rita Branco; Romeu Francisco; Susana Santos; Lars Hestbjerg Hansen; Søren Johannes Sørensen; Paula V. Morais. "Natural hot spots for gain of multiple resistances". Applied and Environmental Microbiology 81 7 (2015): 2534-2543. https://curis.ku.dk/portal/en/publications/natural-hot-spots-for-gain-of-multiple-resistances(0a95b22a-a9f1-4702-a9cd-928523668d0a).html.
    10.1128/AEM.03240-14
  88. Tue Nielsen; Witold Kot; Sebastian R. Sørensen; Lars Hestbjerg Hansen. "Draft genome sequence of MCPA-degrading Sphingomonas sp. strain ERG5, isolated from a groundwater aquifer in Denmark". Genome Announcements 3 1 (2015): https://curis.ku.dk/portal/en/publications/draft-genome-sequence-of-mcpadegrading-sphingomonas-sp-strain-erg5-isolated-from-a-groundwater-aquifer-in-denmark(187263cd-feb9-4515-8995-6351cd75c577).html.
    10.1128/genomeA.01529-14
  89. Annette K. Møller; Tamar Barkay; Martin Asser Hansen; Anders Norman; Lars Hestbjerg Hansen; Søren Johannes Sørensen; Eric S. Boyd; Niels Kroer. "Mercuric reductase genes (merA) and mercury resistance plasmids in High Arctic snow, freshwater and sea-ice brine". FEMS Microbiology Ecology 87 1 (2014): 52-63. https://curis.ku.dk/portal/en/publications/mercuric-reductase-genes-mera-and-mercury-resistance-plasmids-in-high-arctic-snow-freshwater-and-seaice-brine(5323d81c-f68b-4433-a265-6b89e2905e94).html.
    10.1111/1574-6941.12189
  90. Mathis Hjort Hjelmsø; Lars Hestbjerg Hansen; Jacob Bælum; Louise Feld; William E. Holben; Carsten Suhr Jacobsen. "High-resolution melt analysis for rapid comparison of bacterial community compositions". Applied and Environmental Microbiology 80 12 (2014): 3568-3575. https://curis.ku.dk/portal/en/publications/highresolution-melt-analysis-for-rapid-comparison-of-bacterial-community-compositions(0b6ca7ae-886b-40ea-9205-7f87e5244f1c).html.
    10.1128/AEM.03923-13
  91. Saria Otani; Aram Mikaelyan; Tânia Nobre; Lars Hestbjerg Hansen; N'Golo A. Koné; Søren Johannes Sørensen; Duur K. Aanen; et al. "Identifying the core microbial community in the gut of fungus-growing termites". Molecular Ecology 23 18 (2014): 4631–4644-4631–4644. https://curis.ku.dk/portal/en/publications/identifying-the-core-microbial-community-in-the-gut-of-fungusgrowing-termites(6265d109-84c0-48b7-857e-54d6facfd966).html.
    10.1111/mec.12874
  92. D.R. Alves; A. Gaudion; J.E. Bean; P. Perez Esteban; T.C. Arnot; D.R. Harper; Witold Kot; et al. "Combined use of Bacteriophage K and a novel Bacteriophage to reduce Staphylococcus aureus biofilm formation". Applied and Environmental Microbiology 80 21 (2014): 6694-6703. https://curis.ku.dk/portal/en/publications/combined-use-of-bacteriophage-k-and-a-novel-bacteriophage-to-reduce-staphylococcus-aureus-biofilm-formation(c1bd7479-105d-45e7-b088-5d1fed8071f5).html.
    10.1128/AEM.01789-14
  93. Witold Kot; Lars Hestbjerg Hansen; Horst Neve; Karin Hammer; Susanne Jacobsen; Per D. Pedersen; Søren Johannes Sørensen; Knut J. Heller; Finn Vogensen. "Sequence and comparative analysis of Leuconostoc dairy bacteriophages". International Journal of Food Microbiology 176 (2014): 29-37. https://curis.ku.dk/portal/en/publications/sequence-and-comparative-analysis-of-leuconostoc-dairy-bacteriophages(7d5fb443-836c-4646-9c42-e846c4b19129).html.
    10.1016/j.ijfoodmicro.2014.01.019
  94. Simone Dealtry; Peter Nikolai Holmsgaard; Vincent Dunon; Sven Jechalke; Guo-Chun Ding; Ellen Kroegerrecklenfort; Holger Heuer; et al. "Shifts in abundance and diversity of mobile genetic elements after the introduction of diverse pesticides into an on-farm biopurification system over the course of a year". Applied and Environmental Microbiology 80 13 (2014): 4012-4020. https://curis.ku.dk/portal/en/publications/shifts-in-abundance-and-diversity-of-mobile-genetic-elements-after-the-introduction-of-diverse-pesticides-into-an-onfarm-biopurification-system-over-the-course-of-a-year(e9641215-4c7e-4b91-97ef-a56eeb3b1599).html.
    10.1128/AEM.04016-13
  95. Zhuofei Xu; Martin Asser Hansen; Lars Hestbjerg Hansen; Samuel Jehan Auguste Jacquiod; Søren Johannes Sørensen. "Bioinformatic approaches reveal metagenomic characterization of soil microbial community". P L o S One 9 4 (2014): https://curis.ku.dk/portal/en/publications/bioinformatic-approaches-reveal-metagenomic-characterization-of-soil-microbial-community(99f95e45-53f4-49c6-a0b9-1e2b08efa984).html.
    10.1371/journal.pone.0093445
  96. Witold Kot; Finn Vogensen; Søren Johannes Sørensen; Lars Hestbjerg Hansen. "DPS - a rapid method for genome sequencing of DNA-containing bacteriophages directly from a single plaque". Journal of Virological Methods 196 (2014): 152-156. https://curis.ku.dk/portal/en/publications/dps--a-rapid-method-for-genome-sequencing-of-dnacontaining-bacteriophages-directly-from-a-single-plaque(325e9ecf-9f65-4cc6-abf3-6ad2f28f1089).html.
    10.1016/j.jviromet.2013.10.040
  97. Anders Norman; Leise Riber; Wenting Luo; Lili Li; Lars Hestbjerg Hansen; Søren Johannes Sørensen. "An improved method for including upper size range plasmids in metamobilomes". PLoS ONE 9 8 (2014): https://curis.ku.dk/portal/en/publications/an-improved-method-for-including-upper-size-range-plasmids-in-metamobilomes(2f05a0b7-f41e-4151-b4e1-3cc0e7e17e40).html.
    10.1371/journal.pone.0104405
  98. Leise Riber; Pernille Hasse Busk Poulsen; Waleed Abu Al-Soud; Lea Benedicte Skov Hansen; Lasse Bergmark; Asker Brejnrod; Anders Norman; et al. "Exploring the immediate and long-term impact on bacterial communities in soil amended with animal and urban organic waste fertilizers using pyrosequencing and screening for horizontal transfer of antibiotic resistance". F E M S Microbiology Ecology 90 1 (2014): 206-224. https://curis.ku.dk/portal/en/publications/exploring-the-immediate-and-longterm-impact-on-bacterial-communities-in-soil-amended-with-animal-and-urban-organic-waste-fertilizers-using-pyrosequencing-and-screening-for-horizontal-transfer-of-anti(7188b99c-b51.
    10.1111/1574-6941.12403
  99. Camilla Hartmann Friis Hansen; Line Sidsel Fisker Andersen; Lukasz Krych; Stine Broeng Metzdorff; Jane Preuss Hasselby; Søren Skov; Dennis Sandris Nielsen; et al. "Mode of delivery shapes gut colonization pattern and modulates regulatory immunity in mice". Journal of Immunology 193 3 (2014): 1213-1222. https://curis.ku.dk/portal/en/publications/mode-of-delivery-shapes-gut-colonization-pattern-and-modulates-regulatory-immunity-in-mice(af9d1174-174a-485b-8611-1b11325338de).html.
    10.4049/jimmunol.1400085
  100. Christian Grabow Westergaard; Christian Munck; Jens Helby Petersen; Celeste Michala Porsbjerg; Lars Hestbjerg Hansen; Vibeke Backer. "Predictors of neutrophilic airway inflammation in young smokers with asthma". Journal of Asthma 51 4 (2014): 341-347. https://curis.ku.dk/portal/en/publications/predictors-of-neutrophilic-airway-inflammation-in-young-smokers-with-asthma(32d4fdd1-8288-4fd6-b124-58a5c872feca).html.
    10.3109/02770903.2014.880718
  101. Merete Ellekilde; Lukasz Krych; Camilla Hartmann Friis Hansen; Majbritt Ravn Hufeldt; K. Dahl; Lars Hestbjerg Hansen; Søren Johannes Sørensen; et al. "Characterization of the gut microbiota in leptin deficient obese mice". Research in Veterinary Science 96 2 (2014): 241-250. https://curis.ku.dk/portal/en/publications/characterization-of-the-gut-microbiota-in-leptin-deficient-obese-mice(8089716f-69bb-4085-bc6d-a428e6f8c1d1).html.
    10.1016/j.rvsc.2014.01.007
  102. Christina Warinner; João F Matias Rodrigues; Rounak Vyas; Christian Trachsel; Natallia Shved; Jonas Grossmann; Anita Radini; et al. "Pathogens and host immunity in the ancient human oral cavity". Nature Genetics 46 (2014): 336-344. https://curis.ku.dk/portal/en/publications/pathogens-and-host-immunity-in-the-ancient-human-oral-cavity(1f7bc603-4494-49dd-9cc0-0a1ac5a4a824).html.
    10.1038/ng.2906
  103. Camilla Hartmann Friis Hansen; Lukasz Krych; Karsten Buschard; Stine Broeng Metzdorff; Christine Lydia Nellemann; Lars Hestbjerg Hansen; Dennis Sandris Nielsen; et al. "A maternal gluten-free diet reduces inflammation and diabetes incidence in the offspring of NOD mice". Diabetes 63 8 (2014): 2821-2832. https://curis.ku.dk/portal/en/publications/a-maternal-glutenfree-diet-reduces-inflammation-and-diabetes-incidence-in-the-offspring-of-nod-mice(36a93ea4-4bc9-4c9b-a574-753ad027efb1).html.
    10.2337/db13-1612
  104. Jekaterina Jutkina; Lars Hestbjerg Hansen; Lili Li; Eeva Heinaru; Eve Vedler; Merike Joesaar; Ain Heinaru. "Complete nucleotide sequence of the self-transmissible TOL plasmid pD2RT provides new insight into arrangement of toluene catabolic plasmids". Plasmid 70 3 (2013): 393-405. https://curis.ku.dk/portal/en/publications/complete-nucleotide-sequence-of-the-selftransmissible-tol-plasmid-pd2rt-provides-new-insight-into-arrangement-of-toluene-catabolic-plasmids(3d62bff5-5d97-40b4-ab70-522e33913814).html.
    10.1016/j.plasmid.2013.09.003
  105. Tue Nielsen; Zhuofei Xu; Erkin Gozdereliler; Jens Aamand; Lars Hestbjerg Hansen; Sebastian R. Sørensen. "Novel insight into the genetic context of the cadAB genes from a 4-chloro-2-methylphenoxyacetic acid-degrading Sphingomonas". P L o S One 8 12 (2013): https://curis.ku.dk/portal/en/publications/novel-insight-into-the-genetic-context-of-the-cadabgenes-from-a-4chloro2methylphenoxyacetic-aciddegrading-sphingomonas(cbeae5e9-e50e-4190-b586-20213e6ae623).html.
    10.1371/journal.pone.0083346
  106. Pernille Hasse Busk Poulsen; Waleed Abu Al-Soud; Lasse Bergmark; Jakob Magid; Lars Hestbjerg Hansen; Søren Johannes Sørensen. "Effects of fertilization with urban and agricultural organic wastes in a field trial – Prokaryotic diversity investigated by pyrosequencing". Soil Biology & Biochemistry 57 (2013): 784-893. https://curis.ku.dk/portal/en/publications/effects-of-fertilization-with-urban-and-agricultural-organic-wastes-in-a-field-trial--prokaryotic-diversity-investigated-by-pyrosequencing(163f00e9-de2e-4943-b2ba-972d521f5e2a).html.
    10.1016/j.soilbio.2011.12.023
  107. Henriette Lyng Roeder; Lars Hestbjerg Hansen; Søren Johannes Sørensen; Mette Burmølle. "The impact of the conjugative IncP-1 plasmid pKJK5 on multispecies biofilm formation is dependent on the plasmid host". F E M S Microbiology Letters 344 2 (2013): 186-192. https://curis.ku.dk/portal/en/publications/the-impact-of-the-conjugative-incp1-plasmid-pkjk5-on-multispecies-biofilm-formation-is-dependent-on-the-plasmid-host(92c30cbb-fa12-40e0-a78a-70ab412ed75e).html.
    10.1111/1574-6968.12175
  108. Jakub D. Zarsky; Marek Stibal; Andy Hodson; Birgit Sattler; Morten Schostag; Lars Hestbjerg Hansen; Carsten Suhr Jacobsen; Roland Psenner. "Large cryoconite aggregates on a Svalbard glacier support a diverse microbial community including ammonia-oxidizing archaea". Environmental Research Letters 8 3 (2013): https://curis.ku.dk/portal/en/publications/large-cryoconite-aggregates-on-a-svalbard-glacier-support-a-diverse-microbial-community-including-ammoniaoxidizing-archaea(3aa0aaa3-841e-49eb-8211-bd00a5b8c330).html.
    10.1088/1748-9326/8/3/035044
  109. Jennifer Mahony; Witold Kot; James Murphy; Stuart Ainsworth; Horst Neve; Lars Hestbjerg Hansen; Knut J. Heller; et al. "Investigation of the relationship between lactococcal host cell wall polysaccharide genotype and 936 phage receptor binding protein phylogeny". Applied and Environmental Microbiology 79 14 (2013): 4385-4392. https://curis.ku.dk/portal/en/publications/investigation-of-the-relationship-between-lactococcal-host-cell-wall-polysaccharide-genotype-and-936-phage-receptor-binding-protein-phylogeny(cf2d4b92-f171-4be6-9d45-5c82d1fdcc48).html.
    10.1128/AEM.00653-13
  110. Sandra Breum Andersen; Lars Hestbjerg Hansen; Panagiotis Sapountzis; Søren Johannes Sørensen; Jacobus Boomsma. "Specificity and stability of the Acromyrmex–Pseudonocardia symbiosis". Molecular Ecology 22 16 (2013): 4307-4321. https://curis.ku.dk/portal/en/publications/specificity-and-stability-of-the-acromyrmexpseudonocardia-symbiosis(28399188-c62f-4df2-b615-97f6cd1e5bd5).html.
    10.1111/mec.12380
  111. Lili Li; Waleed Abu Al-Soud; Lasse Bergmark; Leise Riber; Lars Hestbjerg Hansen; Jakob Magid; Søren Johannes Sørensen. "Investigating the diversity of Pseudomonas spp. in soil using culture dependent and independent techniques". Current Microbiology 67 4 (2013): 423-430. https://curis.ku.dk/portal/en/publications/investigating-the-diversity-of-pseudomonas-spp-in-soil-using-culture-dependent-and-independent-techniques(1d2a4420-81af-4c12-aab7-881a1e84d85c).html.
    10.1007/s00284-013-0382-x
  112. Kenneth Klingenberg Barfod; Michael Roggenbuck; Lars Hestbjerg Hansen; Susanne Schjørring; Søren Thor Larsen; Søren Johannes Sørensen; Karen Angeliki Krogfelt. "The murine lung microbiome in relation to the intestinal and vaginal bacterial communities". B M C Microbiology 13 (2013): https://curis.ku.dk/portal/en/publications/the-murine-lung-microbiome-in-relation-to-the-intestinal-and-vaginal-bacterial-communities(9fa7e65b-3bf4-4915-aeea-623df261beb5).html.
    10.1186/1471-2180-13-303
  113. Hanna Larner-Svensson; Peder Worning; Mette Bartels; Lars Hestbjerg Hansen; Kit Boye; Henrik Westh. "Complete genome sequence of Staphylococcus aureus strain M1, a unique t024-ST8-IVa Danish methicillin-resistant S. aureus clone". Genome Announcements 1 3 (2013): https://curis.ku.dk/portal/en/publications/complete-genome-sequence-of-staphylococcus-aureus-strain-m1-a-unique-t024st8iva-danish-methicillinresistant-s-aureus-clone(b13eaf37-a835-4a7e-8733-ba56b2b7890f).html.
    10.1128/genomeA.00336-13
  114. Monika Dolejska; Laura Ville; Henrik Hasman; Lars Hestbjerg Hansen; Alessandra Carattoli. "Characterization of IncN plasmids carrying blaCTX-M-1 and qnr genes in Escherichia coli and Salmonella from animals, the environment and humans". Journal of Antimicrobial Chemotherapy (2013): https://curis.ku.dk/portal/en/publications/characterization-of-incn-plasmids-carrying-blactxm1-and-qnr-genes-in-escherichia-coli-and-salmonella-from-animals-the-environment-and-humans(09937db2-cfea-435f-827c-f8965794c17d).html.
    10.1093/jac/dks387
  115. Peter Nikolai Holmsgaard; Søren Johannes Sørensen; Lars Hestbjerg Hansen. "Simultaneous pyrosequencing of the 16S rRNA, IncP-1 trfA, and merA genes". Journal of Microbiological Methods 95 2 (2013): 280-284. https://curis.ku.dk/portal/en/publications/simultaneous-pyrosequencing-of-the-16s-rrna-incp1-trfa-and-mera-genes(6dcd590a-8d6c-4f3a-beb3-f60f255f4146).html.
    10.1016/j.mimet.2013.09.016
  116. Lasse Bergmark; Pernille Hasse Busk Poulsen; Waleed Abu Al-Soud; Anders Norman; Lars Hestbjerg Hansen; Søren Johannes Sørensen. "Assessment of the specificity of Burkholderia and Pseudomonas qPCR assays for detection of these genera in soil using 454 pyrosequencing". F E M S Microbiology Letters 333 1 (2012): 77-84. https://curis.ku.dk/portal/en/publications/assessment-of-the-specificity-of-burkholderia-and-pseudomonas-qpcr-assays-for-detection-of-these-genera-in-soil-using-454-pyrosequencing(4a1cb9e5-10cf-4ed8-9507-c1f2e19fbeea).html.
    10.1111/j.1574-6968.2012.02601.x
  117. Karin Ylva Margareta Lekberg; Tim Schnoor; Rasmus Kjøller; Sean M. Gibbons; Lars Hestbjerg Hansen; Waleed Abu Al-Soud; Søren Johannes Sørensen; Søren Rosendahl. "454-sequencing reveals stochastic local reassembly and high disturbance tolerance within arbuscular mycorrhizal fungal communities". Journal of Ecology 100 1 (2012): 151-160. https://curis.ku.dk/portal/en/publications/454sequencing-reveals-stochastic-local-reassembly-and-high-disturbance-tolerance-within-arbuscular-mycorrhizal-fungal-communities(05e1c9b8-bd49-40b6-9a69-2d38f84096ee).html.
    10.1111/j.1365-2745.2011.01894.x
  118. Mette Burmølle; Anders Norman; Søren Johannes Sørensen; Lars Hestbjerg Hansen. "Sequencing of IncX-plasmids suggests ubiquity of mobile forms of a biofilm-promoting gene cassette recruited from Klebsiella pneumoniae". PLOS ONE 7 7 (2012): https://curis.ku.dk/portal/en/publications/sequencing-of-incxplasmids-suggests-ubiquity-of-mobile-forms-of-a-biofilmpromoting-gene-cassette-recruited-from-klebsiella-pneumoniae(d625005b-d0ac-4a7a-ad0c-9424a04d06f0).html.
    10.1371/journal.pone.0041259
  119. Karen L. Nielsen; Thomas M. Pedersen; Klas I. Udekwu; Andreas Petersen; Robert L. Skov; Lars Hestbjerg Hansen; Diarmaid Hughes; Niels Frimodt-Moller. "Fitness cost". Journal of Antimicrobial Chemotherapy 67 6 (2012): 1325-1332. https://curis.ku.dk/portal/en/publications/fitness-cost(33751bfb-ba53-4808-90d9-3454a9059e57).html.
    10.1093/jac/dks051
  120. Lili Li; Anders Norman; Lars Hestbjerg Hansen; Søren Johannes Sørensen. "Metamobilomics — expanding our knowledge on the pool of plasmid encoded traits in natural environments using high-throughput sequencing". Clinical Microbiology and Infection 18 Suppl. 4 (2012): 8-11. https://curis.ku.dk/portal/en/publications/metamobilomics--expanding-our-knowledge-on-the-pool-of-plasmid-encoded-traits-in-natural-environments-using-highthroughput-sequencing(b8e8c427-ac55-49dd-a264-f813dee7d0ae).html.
    10.1111/j.1469-0691.2012.03862.x
  121. Timothy J. Johnson; Eliza Maria Bielak; Daniela Fortini; Lars Hestbjerg Hansen; Henrik Hasman; Chitrita Debroy; Lisa K. Nolan; Alessandra Carattoli. "Expansion of the IncX plasmid family for improved identification and typing of novel plasmids in drug-resistant Enterobacteriaceae". Plasmid 68 1 (2012): 43-50. https://curis.ku.dk/portal/en/publications/expansion-of-the-incx-plasmid-family-for-improved-identification-and-typing-of-novel-plasmids-in-drugresistant-enterobacteriaceae(33cdbbc8-eff9-4d9e-af6a-ed1815c82700).html.
    10.1016/j.plasmid.2012.03.001
  122. Camilla Hartmann Friis Hansen; Lukasz Krych; Dennis Sandris Nielsen; Finn Vogensen; Lars Hestbjerg Hansen; Søren Johannes Sørensen; K. Buschard; Axel Kornerup Hansen. "Early life treatment with vancomycin propagates Akkermansia muciniphila and reduces diabetes incidence in the NOD mouse". Diabetologia 55 8 (2012): 2285-2294. https://curis.ku.dk/portal/en/publications/early-life-treatment-with-vancomycin-propagates-akkermansia-muciniphila-and-reduces-diabetes-incidence-in-the-nod-mouse(b118b109-81ad-4ea7-b722-8f1a4cbf0f2b).html.
    10.1007/s00125-012-2564-7
  123. Jeanette Berg; Kristian Koefoed Brandt; Waleed Abu Al-Soud; Peter Engelund Holm; Lars Hestbjerg Hansen; Søren Johannes Sørensen; Ole Nybroe. "Selection for Cu-tolerant bacterial communities with altered composition, but unaltered richness, via long-term Cu exposure". Applied and Environmental Microbiology 78 20 (2012): 7438-7446. https://curis.ku.dk/portal/en/publications/selection-for-cutolerant-bacterial-communities-with-altered-composition-but-unaltered-richness-via-longterm-cu-exposure(7d90ed2a-cd08-4161-aeb7-833e58b8ab24).html.
    10.1128/AEM.01071-12
  124. Luciano Procópio; Vanessa M. Alvarez; Diogo A. Jurelevicius; Lars Hestbjerg Hansen; Søren Johannes Sørensen; Janine S. Cardoso; Marcelo Pádula; et al. "Insight from the draft genome of Dietzia cinnamea P4 reveals mechanisms of survival in complex tropical soil habitats and biotechnology potential". Antonie van Leeuwenhoek: Journal of Microbiology 101 2 (2012): 289-302. https://curis.ku.dk/portal/en/publications/insight-from-the-draft-genome-of-dietzia-cinnamea-p4-reveals-mechanisms-of-survival-in-complex-tropical-soil-habitats-and-biotechnology-potential(61389ab3-44fc-4e80-b52c-5327f420abc5).html.
    10.1007/s10482-011-9633-7
  125. Katja Maria Bangsgaard Bendtsen; Lukasz Krych; Dorte Bratbo Sørensen; Wanyong Pang; Dennis Sandris Nielsen; Knud Josefsen; Lars Hestbjerg Hansen; Søren Johannes Sørensen; Axel Kornerup Hansen. "Gut microbiota composition is correlated to grid floor induced stress and behavior in the BALB/c mouse". P L o S One 7 10 (2012): https://curis.ku.dk/portal/en/publications/gut-microbiota-composition-is-correlated-to-grid-floor-induced-stress-and-behavior-in-the-balbc-mouse(7c7ece5d-5a2d-4f62-87c0-ee9d1169c005).html.
    10.1371/journal.pone.0046231
  126. Peter Nikolai Holmsgaard; Anders Norman; Simon Christian Hede; Pernille H.B. Poulsen; Waleed Abu Al-Soud; Lars Hestbjerg Hansen; Søren Johannes Sørensen. "Bias in bacterial diversity as a result of Nycodenz extraction from bulk soil". Soil Biology & Biochemistry 43 10 (2011): 2152-2159. https://curis.ku.dk/portal/en/publications/bias-in-bacterial-diversity-as-a-result-of-nycodenz-extraction-from-bulk-soil(e3f5b5fb-e217-4622-b817-127d504e1b17).html.
    10.1016/j.soilbio.2011.06.019
  127. Lars Hestbjerg Hansen; Mikkel Bentzon-Tilia; Sara Bentzon-Tilia; Anders Norman; Louise Rafty; Søren Johannes Sørensen. "Design and Synthesis of a Quintessential Self-Transmissible IncX1 Plasmid, pX1.0". P L o S One 6 5 (2011): https://curis.ku.dk/portal/en/publications/design-and-synthesis-of-a-quintessential-selftransmissible-incx1-plasmid-px10(d68615d3-fae3-47d3-abb2-613d23c0e2bf).html.
    10.1371/journal.pone.0019912
  128. Hanna Farnelid; Anders F. Andersson; Stefan Bertilsson; Waleed Abu Al-Soud; Lars Hestbjerg Hansen; Søren Johannes Sørensen; Grieg F. Steward; Åke Hagström; Lasse Riemann. "Nitrogenase gene amplicons from global marine surface waters are dominated by genes of non-cyanobacteria". P L o S One 6 4 (2011): e19223-e19223. https://curis.ku.dk/portal/en/publications/nitrogenase-gene-amplicons-from-global-marine-surface-waters-are-dominated-by-genes-of-noncyanobacteria(aed62d26-60a9-4851-9377-b4225b97765d).html.
    10.1371/journal.pone.0019223
  129. Eliza Maria Bielak; Rikke D Bergenholtz; Mikael Skaanning Jørgensen; Søren Johannes Sørensen; Lars Hestbjerg Hansen; Henrik Hasman. "Investigation of diversity of plasmids carrying the blaTEM-52 gene". Journal of Antimicrobial Chemotherapy 66 11 (2011): 2465-74. https://curis.ku.dk/portal/en/publications/investigation-of-diversity-of-plasmids-carrying-the-blatem52-gene(1f45c81b-ff06-4e37-ac99-ed33a785bd43).html.
    10.1093/jac/dkr331
  130. Mette Damkjær Bartels; Lars Hestbjerg Hansen; Kit Boye; Søren Johannes Sørensen; Henrik T. Westh. "An Unexpected Location of the Arginine Catabolic Mobile Element (ACME) in a USA300-Related MRSA Strain". P L o S One 6 1 (2011): e16193-e16193. https://curis.ku.dk/portal/en/publications/an-unexpected-location-of-the-arginine-catabolic-mobile-element-acme-in-a-usa300related-mrsa-strain(d84ba9a1-d8ca-4ce3-9926-fc137bfe7e23).html.
    10.1371/journal.pone.0016193
  131. Nadja Larsen; Finn Vogensen; Rikke Juul Gøbel; Kim F Michaelsen; Waleed Abu Al-Soud; Søren Johannes Sørensen; Lars Hestbjerg Hansen; Mogens Jakobsen. "Predominant genera of fecal microbiota in children with atopic dermatitis are not altered by intake of probiotic bacteria Lactobacillus acidophilus NCFM and Bifidobacterium animalis subsp.lactis Bi-07". FEMS Microbiology Ecology 75 3 (2011): 482-496. https://curis.ku.dk/portal/en/publications/predominant-genera-of-fecal-microbiota-in-children-with-atopic-dermatitis-are-not-altered-by-intake-of-probiotic-bacteria-lactobacillus-acidophilus-ncfm-and-bifidobacterium-animalis-subsplactis-bi07(21bfc1fb-642e.
    10.1111/j.1574-6941.2010.01024.x
  132. Nina Christiansen; Lene Nielsen; Lotte Jakobsen; Marc Stegger; Lars Hestbjerg Hansen; Niels Frimodt-Moller. "Fluoroquinolone resistance mechanisms in urinary tract pathogenic Escherichia coli isolated during rapidly increasing fluoroquinolone consumption in a low-use country". Microbial Drug Resistance 17 3 (2011): 395-406. https://curis.ku.dk/portal/en/publications/fluoroquinolone-resistance-mechanisms-in-urinary-tract-pathogenic-escherichia-coli-isolated-during-rapidly-increasing-fluoroquinolone-consumption-in-a-lowuse-country(b5c344b3-2a56-40f6-8b1e-089f758f0f29).html.
    10.1089/mdr.2011.0015
  133. Martin Iain Bahl; Mette Burmølle; Annelein Meisner; Lars Hestbjerg Hansen; Søren Johannes Sørensen. "All IncP-1 plasmid subgroups, including the novel e subgroup, are prevalent in the influent of a Danish wastewater treatment plant". Plasmid 62 2 (2009): 134-139. https://curis.ku.dk/portal/en/publications/all-incp1-plasmid-subgroups-including-the-novel-e-subgroup-are-prevalent-in-the-influent-of-a-danish-wastewater-treatment-plant(181a8990-eb10-11de-ba73-000ea68e967b).html.
    10.1016/j.plasmid.2009.05.004
  134. Mette Burmølle; Kaare Johnsen; Waleed Mohamad Abdel F Abu Al-Soud; Lars Hestbjerg Hansen; Søren Johannes Sørensen. "The presence of embedded bacterial pure cultures in agar plates stimulate the culturability of soil bacteria.". Journal of Microbiological Methods 79 2 (2009): 166-173. https://curis.ku.dk/portal/en/publications/the-presence-of-embedded-bacterial-pure-cultures-in-agar-plates-stimulate-the-culturability-of-soil-bacteria(747f67e0-2847-11df-8ed1-000ea68e967b).html.
    10.1016/j.mimet.2009.08.006
  135. Rikke D. Bergenholtz; Mikael S. Jørgensen; Lars Hestbjerg Hansen; Lars B. Jensen; Henrik Hasman. "Characterization of genetic determinants of extended-spectrum cephalosporinases (ESCs) in Escherichia coli isolates from Danish and imported poultry meat". Journal of Antimicrobial Chemotherapy 64 1 (2009): 207-209. https://curis.ku.dk/portal/en/publications/characterization-of-genetic-determinants-of-extendedspectrum-cephalosporinases-escs-in-escherichia-coli-isolates-from-danish-and-imported-poultry-meat(4a93d850-2cff-11df-8ed1-000ea68e967b).html.
    10.1093/jac/dkp168
  136. Lotte Jakobsen; Dorthe Sandvang; Lars Hestbjerg Hansen; Line Bagger-Skjøt; Henrik Westh; Claus Bøttcher Jørgensen; Dennis S Hansen; et al. "Characterisation, dissemination and persistence of gentamicin resistant Escherichia coli from a Danish university hospital to the waste water environment". Environment International 34 1 (2008): 108-15. https://curis.ku.dk/portal/en/publications/characterisation-dissemination-and-persistence-of-gentamicin-resistant-escherichia-coli-from-a-danish-university-hospital-to-the-waste-water-environment(b00265d0-dd8c-11dd-b5fc-000ea68e967b).html.
    10.1016/j.envint.2007.07.011
  137. Anders Norman; Lars Hestbjerg Hansen; Qunxin She; Søren Johannes Sørensen. "Nucleotide sequence of pOLA52: a conjugative IncX1 plasmid from Escherichia coli which enables biofilm formation and multidrug efflux". Plasmid 60 1 (2008): 59-74. https://curis.ku.dk/portal/en/publications/nucleotide-sequence-of-pola52-a-conjugative-incx1-plasmid-from-escherichia-coli-which-enables-biofilm-formation-and-multidrug-efflux(dfb2d7f0-dd8d-11dd-b5fc-000ea68e967b).html.
    10.1016/j.plasmid.2008.03.003
  138. Mette Burmølle; Martin Iain Bahl; Lars Bogø Jensen; Søren Johannes Sørensen; Lars Hestbjerg Hansen. "Type 3 fimbriae, encoded by the conjugative plasmid pOLA52, enhance biofilm formation and transfer frequencies in Enterobacteriaceae strains". Microbiology 154 Pt 1 (2008): 187-95. https://curis.ku.dk/portal/en/publications/type-3-fimbriae-encoded-by-the-conjugative-plasmid-pola52-enhance-biofilm-formation-and-transfer-frequencies-in-enterobacteriaceae-strains(a62fade0-dd8e-11dd-b5fc-000ea68e967b).html.
    10.1099/mic.0.2007/010454-0
  139. Lars Hestbjerg Hansen; Lars B. Jensen; Heidi I. Sørensen; Søren Johannes Sørensen. "Substrate specificity of the OqxAB multidrug resistance pump in Escherichia coli and selected enteric bacteria". Journal of Antimicrobial Chemotherapy 60 1 (2007): 145-147. https://curis.ku.dk/portal/en/publications/substrate-specificity-of-the-oqxab-multidrug-resistance-pump-in-escherichia-coli-and-selected-enteric-bacteria(948c15a0-ae1f-11dc-bee9-02004c4f4f50).html.
    10.1016/j.ympev.2006.11.013
  140. Martin Iain Bahl; Lars Hestbjerg Hansen; Søren Johannes Sørensen. "Impact of conjugal transfer on the stability of IncP-1 plasmid pKJK5 in bacterial populations". FEMS Microbiology Letters 266 (2007): 250-256. https://curis.ku.dk/portal/en/publications/impact-of-conjugal-transfer-on-the-stability-of-incp1-plasmid-pkjk5-in-bacterial-populations(69a76e50-ae1c-11dc-bee9-02004c4f4f50).html.
    10.1111/j.1574-6968.2006.00536.x
  141. Mette Burmølle; Lars Hestbjerg Hansen; Søren Johannes Sørensen. "Establishment and early succession of a multispecies biofilm composed of soil bacteria". Microbial Ecology 54 2 (2007): 352-62. https://curis.ku.dk/portal/en/publications/establishment-and-early-succession-of-a-multispecies-biofilm-composed-of-soil-bacteria(40f86210-dd8d-11dd-b5fc-000ea68e967b).html.
    10.1007/s00248-007-9222-5
  142. Martin Iain Bahl; Lars Hestbjerg Hansen; A. Goesmann; Søren Johannes Sørensen. "The multiple antibiotic resistance IncP-1 plasmid pKJK5 isolated from a soil environment is phylogenetically divergent from members of the previously established a, ß and d sub-groups". Plasmid 58 1 (2007): 31-43. https://curis.ku.dk/portal/en/publications/the-multiple-antibiotic-resistance-incp1-plasmid-pkjk5-isolated-from-a-soil-environment-is-phylogenetically-divergent-from-members-of-the-previously-established-a-ss-and-d-subgroups(97232620-ae1d-11dc-bee9-02004c.
    10.1016/j.plasmid.2006.11.007
  143. Trine Gry Østergaard; Lars Hestbjerg Hansen; Mona-Lise Binderup; Anders Norman; Søren Johannes Sørensen. "The cda GenoTox assay: A new sensitive method for detection of environmental genotoxins, including nitroarenes and aromatic amines". Mutation Research - Reviews 631 2 (2007): 77-84. https://curis.ku.dk/portal/en/publications/the-cda-genotox-assay-a-new-sensitive-method-for-detection-of-environmental-genotoxins-including-nitroarenes-and-aromatic-amines(ca7290f0-ae1e-11dc-bee9-02004c4f4f50).html.
  144. Martin Iain Bahl; Lars Hestbjerg Hansen; Tine Licht; Søren Johannes Sørensen. "Conjugative transfer facilitates stable maintenance of IncP-1 plasmid pKJK5 in Escherichia coli cells colonizing the gastrointestinal tract of the germfree rat". Applied and Environmental Microbiology 73 1 (2007): 341-343. https://curis.ku.dk/portal/en/publications/conjugative-transfer-facilitates-stable-maintenance-of-incp1-plasmid-pkjk5-in-escherichia-coli-cells-colonizing-the-gastrointestinal-tract-of-the-germfree-rat(005e0ac0-ae1d-11dc-bee9-02004c4f4f50).html.
    10.1128/AEM.01971-06.
  145. Lars Hestbjerg Hansen; Søren Johannes Sørensen; Lars B. Jensen. "Determination of the genetic background for resistance to olaquindox, a Gram-negative growth promoter". DANMAP 2005 - July 2006 (2006): 100-100. https://curis.ku.dk/portal/en/publications/determination-of-the-genetic-background-for-resistance-to-olaquindox-a-gramnegative-growth-promoter(7490d0f0-d5dd-11de-a1f3-000ea68e967b).html.
  146. K.E. Kristensen; Carsten Suhr Jacobsen; Lars Hestbjerg Hansen; J. Aamand; J.A.W. Morgan; Claus Sternberg; S.R. Sørensen. "Genetic labelling and application of the isoproturonmineralizing Sphingomonas sp. strain SRS2 in soil and rhizosphere". Letters in Applied Microbiology 43 3 (2006): 280-286. https://curis.ku.dk/portal/en/publications/genetic-labelling-and-application-of-the-isoproturonmineralizing-sphingomonas-sp-strain-srs2-in-soil-and-rhizosphere(5d9df78f-f8b9-4789-baa6-49ae5ae40e17).html.
    10.1111/j.1472-765X.2006.01956.x
  147. Anders Norman; Lars Hestbjerg Hansen; Søren Johannes Sørensen. "A flow cytometry-optimized assay using an SOS-green fluorescent protein (SOS-GFP) whole-cell biosensor for the detection of genotoxins in complex environments". Mutation Research - Reviews 603 2 (2006): 164-172. https://curis.ku.dk/portal/en/publications/a-flow-cytometryoptimized-assay-using-an-sosgreen-fluorescent-protein-sosgfp-wholecell-biosensor-for-the-detection-of-genotoxins-in-complex-environments(31371840-ad77-11dc-bee9-02004c4f4f50).html.
    10.1016/j.mrgentox.2005.11.008
  148. Mette Burmølle; J.S. Webb; D. Rao; Lars Hestbjerg Hansen; Søren Johannes Sørensen; S. Kjelleberg. "Enhanced Biofilm Formation and Increased Resistance to Antimicrobial Agents and Bacterial Invasion Are Caused by Synergistic Interactions in Multispecies Biofilms". Applied and Environmental Microbiology 72 6 (2006): 3916-3923. https://curis.ku.dk/portal/en/publications/enhanced-biofilm-formation-and-increased-resistance-to-antimicrobial-agents-and-bacterial-invasion-are-caused-by-synergistic-interactions-in-multispecies-biofilms(725f5150-6c38-11dc-bee9-02004c4f4f50).html.
    10.1128/AEM.03022-05
  149. Søren Johannes Sørensen; Mette Burmølle; Lars Hestbjerg Hansen. "Making bio-sense of toxicity: new developments in whole-cell biosencors". Current Opinion in Biotechnology 17 1 (2006): 11-16. https://curis.ku.dk/portal/en/publications/making-biosense-of-toxicity-new-developments-in-wholecell-biosencors(707b00f0-6c38-11dc-bee9-02004c4f4f50).html.
    10.1016/j.copbio.2005.12.007
  150. Martin Iain Bahl; Lars Hestbjerg Hansen; Søren Johannes Sørensen. "Construction of an extended range whole-cell tetracycline biosensor by use of the tet(M) resistance gene". FEMS Microbiology Letters 253 2 (2005): 201-205. https://curis.ku.dk/portal/en/publications/construction-of-an-extended-range-wholecell-tetracycline-biosensor-by-use-of-the-tetm-resistance-gene(29712fd0-74c3-11db-bee9-02004c4f4f50).html.
    10.1016/j.femsle.2005.09.034
  151. Anders Norman; Lars Hestbjerg Hansen; Søren Johannes Sørensen. "Construction of a ColD cda Promoter-Based SOS-Green Fluorescent Protein Whole-Cell Biosensor with Higher Sensitivity toward Genotoxic Compounds than Constructs Based on recA, umuDC, or sulA Promoters". Applied and Environmental Microbiology 71 5 (2005): 2338-2346. https://curis.ku.dk/portal/en/publications/construction-of-a-cold-cda-promoterbased-sosgreen-fluorescent-protein-wholecell-biosensor-with-higher-sensitivity-toward-genotoxic-compounds-than-constructs-based-on-reca-umudc-or-sula-promoters(246a42b0-74c3-11d.
    10.1128/AEM.71.5.2338-2346.2005
  152. Lars Hestbjerg Hansen; Søren Johannes Sørensen; Helle S. Jørgensen; Lars B. Jensen. "The Prevalence of the OqxAB Multidrug Efflux Pump amongst Olaquindox-Resistant Escherichia coli in Pigs". Microbial Drug Resistance 11 4 (2005): 378-382. https://curis.ku.dk/portal/en/publications/the-prevalence-of-the-oqxab-multidrug-efflux-pump-amongst-olaquindoxresistant-escherichia-coli-in-pigs(24736a70-74c3-11db-bee9-02004c4f4f50).html.
    10.1089/mdr.2005.11.378
  153. Mette Burmølle; Lars Hestbjerg Hansen; Søren Johannes Sørensen. "Use of a Whole-Cell Biosensor and Flow Cytometry to Detect AHL Production by an Indigenous Soil Community During Decomposition". Microbial Ecology 50 2 (2005): 221-229. https://curis.ku.dk/portal/en/publications/use-of-a-wholecell-biosensor-and-flow-cytometry-to-detect-ahl-production-by-an-indigenous-soil-community-during-decomposition(3789bce0-74c3-11db-bee9-02004c4f4f50).html.
    10.1007/s00248-004-0113-8
  154. Martin Iain Bahl; Søren Johannes Sørensen; Lars Hestbjerg Hansen. "Quantification of plasmid loss in Escherichia coli cells by use of flow cytometry". FEMS Microbiology Letters 232 (2004): 45-49. https://curis.ku.dk/portal/en/publications/quantification-of-plasmid-loss-in-escherichia-coli-cells-by-use-of-flow-cytometry(ad40c730-74c3-11db-bee9-02004c4f4f50).html.
    10.1016/S0378-1097(04)00015-1
  155. Lars Hestbjerg Hansen; Elsebetta Johannesen; Anders H. Sørensen; Mette Burmølle; Søren Johannes Sørensen. "Plasmid Encoded Multidrug Efflux Pump Conferring Resistance to Olaquindox in Escherichia coli". Antimicrobial Agents and Chemotherapy 48 9 (2004): 3332-3337. https://curis.ku.dk/portal/en/publications/plasmid-encoded-multidrug-efflux-pump-conferring-resistance-to-olaquindox-in-escherichia-coli(a718b2a0-74c3-11db-bee9-02004c4f4f50).html.
    10.1128/AAC.48.9.3332-3337.2004
  156. Martin Iain Bahl; Søren Johannes Sørensen; Lars Hestbjerg Hansen; Tine Rask Licht. "Effect of Tetracycline on Transfer and Establishment of the Tetracycline-Inducible Conjugative Transposon Tn916 in the Guts of Gnotobiotic Rats". Applied and Environmental Microbiology 70 2 (2004): 758-764. https://curis.ku.dk/portal/en/publications/effect-of-tetracycline-on-transfer-and-establishment-of-the-tetracyclineinducible-conjugative-transposon-tn916-in-the-guts-of-gnotobiotic-rats(a1f11e20-74c3-11db-bee9-02004c4f4f50).html.
    10.1128/AEM.70.2.758-764.2004
  157. Martin Iain Bahl; Lars Hestbjerg Hansen; Tine Rask Licht; Søren Johannes Sørensen. "In Vivo Detection and Quantification of Tetracycline by Use of a Whole-Cell Biosensor in the Rat Intestine". Antimicrobial Agents and Chemotherapy Vol. 48, N (2004): 1112-1117. https://curis.ku.dk/portal/en/publications/in-vivo-detection-and-quantification-of-tetracycline-by-use-of-a-wholecell-biosensor-in-the-rat-intestine(ada4e030-74c3-11db-bee9-02004c4f4f50).html.
    10.1128/AAC.48.4.1112-1117.2004
  158. Anders H. Sørensen; Lars Hestbjerg Hansen; Elsebetta Johannesen; Søren Johannes Sørensen. "Conjugative Plasmid Conferring Resistance to Olaquindox". Antimicrobial agents and Chemotheraphy 47 2 (2003): 798-799. https://curis.ku.dk/portal/en/publications/conjugative-plasmid-conferring-resistance-to-olaquindox(45389660-ad69-11dc-bee9-02004c4f4f50).html.
    10.1128/AAC.47.2.798-799.2003
  159. Mette Burmølle; Lars Hestbjerg Hansen; Søren Johannes Sørensen. "Presence of N-acyl Homoserine Lactones in Soil Detected by a Whole-cell Biosensor and Flow cytometry". Microbial Ecology 45 (2003): 226-236. https://curis.ku.dk/portal/en/publications/presence-of-nacyl-homoserine-lactones-in-soil-detected-by-a-wholecell-biosensor-and-flow-cytometry(f94b51c0-aa2f-11dc-bee9-02004c4f4f50).html.
    10.1007/s00248-002-2028-6
  160. Søren Johannes Sørensen; Anders H. Sørensen; Lars Hestbjerg Hansen; Gunnar Øregaard; Duncan Veal. "Direct Detection and Quantification of Horizontal Gene Transfer using Flow Cytometry and gfp as a Reporter Gene". Current Microbiology 47 2 (2003): 129-133. https://curis.ku.dk/portal/en/publications/direct-detection-and-quantification-of-horizontal-gene-transfer-using-flow-cytometry-and-gfp-as-a-reporter-gene(573d4a60-ad6c-11dc-bee9-02004c4f4f50).html.
    10.1007/s00284-002-3978-0
  161. Julia R. de Lipthay; Nina Tuxen; Kaare Johnsen; Lars Hestbjerg Hansen; Hans-Jørgen Albrechtsen; Poul L. Bjerg; Jens Aamand. "In Situ Exposure to Low Herbicide Concentrations Affects Microbial Population Composition and Catabolic Gene Frequency in an Aerobic Shallow Aquifer". Applied and Environmental Microbiology 69 1 (2003): 461-467. https://curis.ku.dk/portal/en/publications/in-situ-exposure-to-low-herbicide-concentrations-affects-microbial-population-composition-and-catabolic-gene-frequency-in-an-aerobic-shallow-aquifer(856dbbf0-ad5c-11dc-bee9-02004c4f4f50).html.
  162. Lars Hestbjerg Hansen; Frank Aarestrup; Søren Johannes Sørensen. "Quantification of bioavailable chlortetracycline in pig feces using a bacterial whole-cell biosensor". Veterinary Microbiology 87 1 (2002): 51-57. https://curis.ku.dk/portal/en/publications/quantification-of-bioavailable-chlortetracycline-in-pig-feces-using-a-bacterial-wholecell-biosensor(975f1fc0-74c3-11db-bee9-02004c4f4f50).html.
    10.1016/S0378-1135(02)00029-9
  163. Lasse Dam Rasmussen; Flemming Ekelund; Lars Hestbjerg Hansen; Søren Johannes Sørensen; Kaare Johnsen. "Group-specific PCR primers to amplify 24S a-subunit rRNA genes from Kinetoplastida (Protozoa) used in denaturing gradient gel electrophoresis". Microbial Ecology 42 (2001): 109-115. https://curis.ku.dk/portal/en/publications/groupspecific-pcr-primers-to-amplify-24s-asubunit-rrna-genes-from-kinetoplastida-protozoa-used-in-denaturing-gradient-gel-electrophoresis(d9f68f90-74c7-11db-bee9-02004c4f4f50).html.
    10.1007/s002480000120
  164. Lars Hestbjerg Hansen; Søren Johannes Sørensen. "The use of whole-cell biosensors to detect and quantify compounds or conditions affecting biological systems". Microbial Ecology 42 (2001): 483-494. https://curis.ku.dk/portal/en/publications/the-use-of-wholecell-biosensors-to-detect-and-quantify-compounds-or-conditions-affecting-biological-systems(975534b0-74c3-11db-bee9-02004c4f4f50).html.
    10.1007/s00248-001-0025-9
  165. Lars Hestbjerg Hansen; Belinda Ferrari; Anders Morten Hay Sørensen; Duncan Veal; Søren Johannes Sørensen. "Detection of Oxytetracycline production by Streptomyces rimosus in soil microcosms by combining whole-cell biosensors and flow cytometry". Applied and Environmental Microbiology 67 (2001): 239-244. https://curis.ku.dk/portal/en/publications/detection-of-oxytetracycline-production-by-streptomyces-rimosus-in-soil-microcosms-by-combining-wholecell-biosensors-and-flow-cytometry(d9ab55c0-74c7-11db-bee9-02004c4f4f50).html.
    10.1128/AEM.67.1.239-244.2001
  166. Lars Hestbjerg Hansen; Søren Johannes Sørensen. "Detection and quantification of tetracyclines by whole cell biosensors". FEMS Microbiology Letters 190 (2000): 273-278. https://curis.ku.dk/portal/en/publications/detection-and-quantification-of-tetracyclines-by-whole-cell-biosensors(476f2870-74c8-11db-bee9-02004c4f4f50).html.
    10.1016/S0378-1097(00)00347-5
  167. Lars Hestbjerg Hansen; Søren Johannes Sørensen. "Versatile biosensor vectors for detection and quantification of mercury". FEMS Microbiology Letters 193 (2000): 123-127. https://curis.ku.dk/portal/en/publications/versatile-biosensor-vectors-for-detection-and-quantification-of-mercury(4760f7a0-74c8-11db-bee9-02004c4f4f50).html.
    10.1016/S0378-1097(00)00462-6
  168. Lars Hestbjerg Hansen; Steen Knudsen; Søren Johannes Sørensen. "The effect of the lacY gene on the induction of IPTG inducible promoters, studied in Escherichia coli and Pseudomonas fluorescens". Current Microbiology 36 (1998): 341-347. https://curis.ku.dk/portal/en/publications/the-effect-of-the-lacy-gene-on-the-induction-of-iptg-inducible-promoters-studied-in-escherichia-coli-and-pseudomonas-fluorescens(d4e09c60-74c9-11db-bee9-02004c4f4f50).html.
    10.1007/s002849900320
  169. J A Hansen; Lars Hestbjerg Hansen; X Wang; J J Kopchick; F Gouilleux; B Groner; Annette Møldrup; et al. "The role of GH receptor tyrosine phosphorylation in Stat5 activation". Journal of Molecular Endocrinology 18 3 (1997): 213-21. https://curis.ku.dk/portal/en/publications/the-role-of-gh-receptor-tyrosine-phosphorylation-in-stat5-activation(2fc289f2-926a-4524-a11b-83d34e444aed).html.
  170. Lars Hestbjerg Hansen; Søren Johannes Sørensen; Lars B. Jensen. "Chromosomal insertion of the entire Escherichia coli lactose operon, into two strains of Pseudomonas, using a modified miniTn5 delivery system". Gene 186 (1997): 167-173. https://curis.ku.dk/portal/en/publications/chromosomal-insertion-of-the-entire-escherichia-coli-lactose-operon-into-two-strains-of-pseudomonas-using-a-modified-minitn5-delivery-system(1ac9d6a0-74cb-11db-bee9-02004c4f4f50).html.
    10.1016/S0378-1119(96)00688-9
  171. Sten Knudsen; Peter Saadbye; Lars Hestbjerg Hansen; April Collier; Bodil L. Jacobsen; Jørgen Schlundt; Olle H. Karlström. "Development and testing of improved suicide functions for biological containment of bacteria". Applied and Environmental Microbiology 61 3 (1995): 985-991. https://curis.ku.dk/portal/en/publications/development-and-testing-of-improved-suicide-functions-for-biological-containment-of-bacteria(8b17c4b0-74cd-11db-bee9-02004c4f4f50).html.
Report
  1. Jannik Hansen; Lars Hestbjerg Hansen; Mikkel Tamstrof; Kirsten Seestern Christoffersen; Erik Jeppesen; Niels Martin Schmidt. 2008. Zackenberg Basic: The BioBasic programme. https://curis.ku.dk/portal/en/publications/zackenberg-basic-the-biobasic-programme(aaebe0c0-095c-11de-8478-000ea68e967b).html.

Other

Other output
  1. Gut microbiome and its cofactors are linked to lipoprotein distribution profiles. 2021. Josué L. Castro-Mejía; Bekzod Khakimov; Mads V. Lind; Eva Garne; Petronela Paulová; Elnaz Tavakkoli; Lars H. Hansen; et al. https://doi.org/10.1101/2021.09.01.458531.
    10.1101/2021.09.01.458531
  2. Mobilization of antibiotic resistance genes differ by resistance mechanism. 2021. Tue Kjærgaard Nielsen; Patrick Denis Browne; Lars Hestbjerg Hansen. https://doi.org/10.1101/2021.01.10.426126.
    10.1101/2021.01.10.426126
  3. Epigenetic Memories. The Hidden Drivers of Bacterial Persistence?. 2021. Leise Riber; Lars Hestbjerg Hansen. https://curis.ku.dk/portal/en/publications/epigenetic-memories(f8abafae-e4fd-49db-b9cb-150cb99e4c5a).html.
    10.1016/j.tim.2020.12.005
  4. Genomic characterization of three novel Pseudomonas phages within the subfamily of Autographivirinae isolated from organic waste. 2020. Jacob B Jørgensen; Amaru M Djuurhus; Alexander B. Carstens; Witold Kot; Cindy E. Morris; Lars H. Hansen. https://doi.org/10.1101/2020.01.20.910588.
    10.1101/2020.01.20.910588
  5. Isolation and complete genome sequencing of Pectobacterium phage Jarilo, representing a novel genus of bacteriophages within the subfamily Autographivirinae. 2020. Julie Stenberg Pedersen; Alexander Byth Carstens; Amaru Miranda Djurhuus; Witold Kot; Lars Hestbjerg Hansen. https://doi.org/10.1101/2020.01.16.909176.
    10.1101/2020.01.16.909176
  6. Faecal virome transplantation decrease symptoms of type-2-diabetes and obesity in a murine model. 2019. Torben Sølbeck Rasmussen; Caroline M. Junker Mentzel; Witold Kot; Josué L. Castro-Mejía; Simone Zuffa; Jonathan Swann; Lars Hestbjerg Hansen; et al. https://doi.org/10.1101/792556.
    10.1101/792556
  7. A Novel and Direct Metamobilome Approach improves the Detection of Larger-sized Circular Elements across Kingdoms. 2019. Katrine Skov Alanin; Tue Sparholt Jørgensen; Patrick Browne; Bent Petersen; Leise Riber; Witold Kot; Lars Hestbjerg Hansen. https://doi.org/10.1101/761098.
    10.1101/761098
  8. Mouse vendor influence on the bacterial and viral gut composition exceeds the effect of diet. 2019. Torben Sølbeck Rasmussen; Liv de Vries; Witold Kot; Lars Hestbjerg Hansen; Josué L. Castro-Mejía; Finn Kvist Vogensen; Axel Kornerup Hansen; Dennis Sandris Nielsen. https://doi.org/10.1101/588160.
    10.1101/588160
  9. The genome and mRNA transcriptome of the cosmopolitan calanoid copepod Acartia tonsa Dana improve the understanding of copepod genome size evolution. 2019. Tue Sparholt Jørgensen; Bent Petersen; H. Cecilie B. Petersen; Patrick Denis Browne; Stefan Prost; Jonathon H. Stillman; Lars Hestbjerg Hansen; Benni Winding Hansen. https://doi.org/10.1101/560102.
    10.1101/560102