Tania Pereira Lopes (2F10-9ADB-C978)

Curriculum Vitae

Tania Pereira completed PhD in Biomedical Engineering in 2014/11/27 at the University of Coimbra Faculdade de Ciencias e Tecnologia and a Master in Biomedical Engineering in 2009 by the University of Coimbra. Currently, she is Research Assistant at INESC TEC - Institute for Systems and Computer Engineering, Technology, and Science. She is the author/co-author of 45 articles in journals and 7 sections of books. She lectured several subjects on the biomedical engineering domain at the University of Coimbra, the University of Lleida, the University of Porto, and the University of Portucalense. She is a supervisor/co-supervisor of 3 PhD students and of 49 MSc students/Internships. She has received 4 awards and/or honors. She participated in several scientific projects, two of them as PI: PI of the Marie Currie Fellowship and, currently, PI of an exploratory project from FCT. In her professional activities, she interacted with 143 collaborators and co-authorship scientific papers. The large experience on scientific projects, the great investment in writing proposals, the verified success in getting funding (two of them as PI), the extensive collaborations, and the number of PhD students under her supervision confirm her ability to create a consistent career pathway in the biomedical engineering domain.

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Identification

Personal identification

Full name: Tania Pereira Lopes

Citation names

Pereira, Tania

Author identifiers

Ciência ID: 2F10-9ADB-C978
ORCID iD: 0000-0003-1681-2436

Email addresses

taniapereira10@gmail.com (Professional)

Languages

Language	Speaking	Reading	Writing	Listening
Portuguese	Advanced (C1)	Advanced (C1)	Advanced (C1)	Advanced (C1)
English	Advanced (C1)	Advanced (C1)	Advanced (C1)	Advanced (C1)
Spanish; Castilian	Advanced (C1)	Advanced (C1)	Advanced (C1)	Advanced (C1)
Catalan	Beginner (A1)	Intermediate (B1)	Beginner (A1)	Beginner (A1)

Education

	Degree	Classification
2010/01 - 2014/11/27 Concluded	PhD in Biomedical Engineering (Doutoramento) Universidade de Coimbra Faculdade de Ciencias e Tecnologia, Portugal "Non-Invasive Hemodynamic Parameters Assessment using Optoelectronic Devices" (THESIS/DISSERTATION)	Magna Cum Laude
2004/09 - 2009 Concluded	Master in Biomedical Engineering (Mestrado) Universidade de Coimbra Faculdade de Ciencias e Tecnologia, Portugal "Methodologies for Hemodynamic Parameters Assessment" (THESIS/DISSERTATION)

Affiliation

Science

	Category Host institution	Employer
2019/07/01 - Current	Research Assistant (Research)	Instituto de Engenharia de Sistemas e Computadores Tecnologia e Ciência, Portugal
	Instituto de Engenharia de Sistemas e Computadores Tecnologia e Ciência, Portugal
2022/01 - 2022/04	Visiting Researcher (Research)	Royal Melbourne Institute of Technology, Australia

2018/01/01 - 2019/07/01	Research Assistant (Research)	University of California San Francisco, United States

2016/01/01 - 2017/12/31	Research Assistant (Research)	Institut de Recerca Biomèdica de Lleida Fundació Doctor Pifarré, Spain

2016/11 - 2016/12	Visiting Researcher (Research)	Georgia Institute of Technology, United States

2015/03/01 - 2015/12/31	Researcher (Research)	Universidade do Porto, Portugal

2014/11/27 - 2015/02/28	Researcher (Research)	Universidade do Minho, Portugal

2008/08/01 - 2014/11/27	Researcher (Research)	Universidade de Coimbra, Portugal

Teaching in Higher Education

	Category Host institution	Employer
2023 - Current	Assistant Professor (University Teacher)	Universidade de Coimbra, Portugal

2022/02 - 2022/07	Invited Assistant Professor (University Teacher)	Universidade do Porto, Portugal

Others

	Category Host institution	Employer
2021/03/15 - 2023	Assistant professor of Computer Vision - Master Data Science	Universidade Portucalense Infante Dom Henrique, Portugal

2017/09/01 - 2017/12/31	Assistant professor of Bioinformatic in UDL- 3th year of Bachelor in Biomedical Sciences from the Faculty of Medicine and Biotechnology from the School of Agrifood and Forestry Science and Engineering	Universitat de Lleida, Spain

2017/02/01 - 2017/07/31	Assistant professor of Statistic in UDL - 1st year of Bachelor in Biomedical Sciences from the Faculty of Medicine and Biotechnology from the School of Agrifood and Forestry Science and Engineering	Universitat de Lleida, Spain

2014/02/01 - 2014/07/01	Assistant professor at University of Coimbra in the course of Electronics - 2th year of Master in Physics Engineering, Bachelor in Physics and Master in Biomedical Engineering	Universidade de Coimbra, Portugal

2013/09/01 - 2014/02/01	Assistant professor University of Coimbra in the course of Electronics - 2th year of Master in Physics Engineering, Bachelor in Physics and Master in Biomedical Engineering	Universidade de Coimbra, Portugal

2013/02/01 - 2013/07/01	Assistant professor at the Physics Department of the University of Coimbra in the course of Thermodynamic - 2th year of Master in Physics Engineering and Bachelor in Physics	Universidade de Coimbra, Portugal

Projects

Grant

	Designation	Funders
2015/03 - 2015/12	VOCE - Classifying stress from live speech VOCE Research Fellow Instituto de Telecomunicações, Portugal	Fundação para a Ciência e a Tecnologia Concluded
2014/12 - 2015/02	Do IT – Desenvolvimento e Operacionalização da Investigação de Translação Do-it Research Fellow Universidade do Minho Instituto de Investigação em Ciências da Vida e Saúde, Portugal	European Commission Concluded
2012 - 2014	Non-Invasive Hemodynamic Parameters Assessment using Optoelectronic Devices SFRH / BD / 79334 / 2011 PhD Student Fellow Universidade de Coimbra, Portugal	Fundação para a Ciência e a Tecnologia Concluded
2012/03 - 2012/07	QREN 13842 TICE-Healthy Health Systems and Life Quality QREN 13842 TICE-Healthy Research Fellow Universidade de Coimbra, Portugal	European Commission Concluded
2010 - 2012	Development and characterization of new sensors for hemodynamic assessment PTDC/SAU-BEB/100650/2008 Research Fellow Universidade de Coimbra, Portugal	Fundação para a Ciência e a Tecnologia Concluded

Contract

	Designation	Funders
2022/01/01 - Current	CIRCUMSTANCE – Circulating Microbial Signatures for Early Diagnosis of Cancer PTDC/BTM-TEC/0367/2021 Researcher Fundação para a Ciência e a Tecnologia, Portugal	Ongoing
2019/07/01 - 2021/12/31	LuCaS: Lung Cancer Screening - A non-invasive methodology for early diagnosis POCI-01-0145-FEDER-030263 Researcher Instituto de Engenharia de Sistemas e Computadores Tecnologia e Ciência, Portugal	Fundação para a Ciência e a Tecnologia Ongoing

Other

	Designation	Funders
2024 - Current	AI4Lungs - AI-Based personalised care for respiratory disease using multi-modal data in patient stratification 101080756 Researcher
2023/03/01 - Current	LUCCA: AI-based Models for Lung Cancer Characterization: a Multimodal and Causal Approach 2022.03488.PTDC Principal investigator	Fundação para a Ciência e a Tecnologia
2023/03/01 - Current	CELLo: The sound of cells: An acoustic platform aiming towards biophysical cell fingerprints for label-free precision medicine 2022.05237.PTDC Researcher	Fundação para a Ciência e a Tecnologia Ongoing
2023 - Current	PHASE IV AI 101095384 Researcher	European Union Ongoing
2018 - 2019	Development novel algorithms for Atrial Fibrillation detection and monitoring using wearables Afib Researcher	National Institutes of Health
2016 - 2017	Identication, Classication and Analysis of Biological Organization Design Principles In Molecular Circuits Marie Curie Principal investigator Institut de Recerca Biomèdica de Lleida, Spain	European Commission
2016/12 - 2016/12	Gene enrichment analysis in the yeast for the environmental stress Visiting Postdoc Other Georgia Institute of Technology, United States

Outputs

Publications

Book chapter	Pereira, Tania; Simoes, Ricardo. "Challenges of Thermographic Image in Medical Applications". In Thermal imaging types, advancements and applications. Nova Science Publishers, Inc, 2017. Published Pereira, Helena; Maldonado, J; Pereira, Tania; Contente, Maria; Almeida, Vania; Simões, J. B.; Cardoso, Joao; Correia, Cardoso. "Characterization of an Acoustic Based Device for Local Arterial Stiffness Assessment". In Communications in Computer and Information Science, 98-114. Springer Berlin Heidelberg, 2014. Published • 10.1007/978-3-662-44485-6_8 Borges, Elisabeth; Sequeira, Mariana; Cortez, André; Pereira, Helena Catarina; Pereira, Tânia; Almeida, Vânia; Vasconcelos, Teresa; et al. "Pine Decay Assessment by Means of Electrical Impedance Spectroscopy". In Communications in Computer and Information Science, 54-73. Springer Berlin Heidelberg, 2014. Published • 10.1007/978-3-662-44485-6_5 Pereira, Tania; Santos, Ines; Oliveira, Tatiana; Vaz, Pedro; Santos Pereira, Telmo; Santos, Helder; Almeida, Vania; et al. "Clinical Test for Validation of a New Optical Probe for Hemodynamic Parameters Assessment". In Communications in Computer and Information Science, 269-283. Springer Berlin Heidelberg, 2014. Published • 10.1007/978-3-662-44485-6_19 Almeida, Vania; Pereira, Helena; Pereira, Tania; Ferreira, Luis; Correia, Carlos; Cardoso, Joao. "Assessment of the Pulse Wave Variability for a New Non-invasive Device". In The International Conference on Health Informatics, 240-243. Springer International Publishing, 2014. Published • 10.1007/978-3-319-03005-0_61 Pereira, Tania; Pereira, Telmo Santos; Cabeleira, Manuel; Matos, Patricia; Borges, Elisabeth; Almeida, Vania; Pereira, H.C.; Cardoso, Joao; Correia, Carlos. "Non-contact Pulse Wave Velocity Assessment Using Optical Methods". In Communications in Computer and Information Science, 246-257. Springer, 2011. Published • 10.1007/978-3-642-29752-6 Pereira, Helena; Cardoso, J. M.; Almeida, Vania; Pereira, Tania; Borges, Elisabeth; Figueiras, Edite; Ferreira, L. R.; Simões, J. B.; Correia, Carlos. "Programmable Test Bench for Hemodynamic Studies". In World Congress on Medical Physics and Biomedical Engineering, September 7 - 12, 2009, Munich, Germany, 1460-1463. Springer Berlin Heidelberg, 2009. Published • 10.1007/978-3-642-03882-2_387
Conference abstract	Claúdia Freitas; Pereira, Tania; Gil Pinheiro; Catarina Dias; Venceslau Hespanhol; José Luis Costa; António Cunha; Hélder Oliveira. "The role of radiogenomics in EGFR and KRAS mutation status prediction among Non-Small Cell Lung Cancer patients". Paper presented in CHEST Congress 2020, Bologna, 2020. Published Claúdia Freitas; Pereira, Tania; Gil Pinheiro; Catarina Dias; Venceslau Hespanhol; José Luis Costa; António Cunha; Hélder Oliveira. "Predicting EGFR mutation status in non-small cell lung cancer using radiogenomics modeling". Paper presented in XXVII Congresso de Pneumologia do Norte, Porto, 2020. Published Xiuyun Liu; Danilo Cardim; Joseph Donnelly; Pereira, Tania; Nate Tran; Judy Chang; Donald Griesdale; Mypinder S. Sekhon; Xiao Hu. "Intracranial Pressure and Jugular Venous Pressure in Patients with Hypoxic Ischemic Brain Injury after Cardiac Arrest". Paper presented in International Symposium on Intracranial Pressure and Neuromonitoring, Leuven, 2019. Published Xiuyun Liu; Danilo Cardim; Joseph Donnelly; Pereira, Tania; Nate Tran; Judy Chang; Donald Griesdale; Mypinder S. Sekhon; Xiao Hu. "Intracranial Pressure Determines Arterial Blood Pressure through Sympathetic Activities in high frequency and in low frequency through Cushing response". Paper presented in International Symposium on Intracranial Pressure and Neuromonitoring, Leuven, 2019. Published Xiuyun Liu; Danilo Cardim; Joseph Donnelly; Pereira, Tania; Nate Tran; Judy Chang; Donald Griesdale; Mypinder S. Sekhon; Xiao Hu. "Influence of Hypothemia after Resuscitation from Cardiac Arrest". Paper presented in International Symposium on Intracranial Pressure and Neuromonitoring, Leuven, 2019. Published
Conference paper	Ribeiro, Lucas; Hu, Xiao; Oliveira, Hélder P.; Pereira, Tania. "AI-based Models to Predict the Heart Rate Using PPG and Accelerometer Signals During Physical Exercise". 2023. 10.1109/bibm58861.2023.10385871 Gomes, André; Pereira, Tania; Silva, Francisco; Franco, Pedro; Carvalho, Diogo Costa; Dias, Sílvia Costa; Oliveira, Hélder P.. "Patch-based CNN Models for Bone Marrow Edema Detection Using MRI". 2023. 10.1109/bibm58861.2023.10385930 Marco Teixeira; Pereira, Tania; SILVA, FRANCISCO; António Cunha; Hélder Oliveira. "Unsupervised Approach for Malignancy Assessment of Lung Nodules in Computed Tomography Scans Using Radiomic Features". Paper presented in 2022 44th Annual International Conference of the IEEE Engineering in Medicine & Biology Society (EMBC), Glasgow, 2022. Accepted Pedro Silva; Pereira, Tania; Marco Teixeira; Francisco Silva; Hélder Oliveira. "On the way for the best imaging features from CT images to predict EGFR Mutation Status in Lung Cancer". Paper presented in 2022 44th Annual International Conference of the IEEE Engineering in Medicine & Biology Society (EMBC), 2022. Accepted Pereira, Tania; Silva, Francisco; Claro, Pedro; Carvalho, Diogo Costa; Dias, Silvia Costa; Torrao, Helena; Oliveira, Helder P.. "A Random Forest-based Classifier for MYCN Status Prediction in Neuroblastoma using CT Images". Paper presented in 2022 44th Annual International Conference of the IEEE Engineering in Medicine & Biology Society (EMBC), Glasgow, 2022. Published • 10.1109/embc48229.2022.9871349 Bernardo Ramos; Pereira, Tania; Francisco Silva; Costa, José Luis; Hélder Oliveira. "Differential Gene Expression Analysis of the Most Relevant Genes for Lung Cancer Prediction and Sub-type Classification". 2022. Accepted Ventura, Alexandra; Pereira, Tania; Silva, Francisco; Freitas, Claudia; Cunha, Antonio; Oliveira, Helder P.. "Stacking Approach for Lung Cancer EGFR Mutation Status Prediction from CT Scans". Paper presented in 2021 IEEE International Conference on Bioinformatics and Biomedicine (BIBM), 2021. Published • 10.1109/bibm52615.2021.9669429 Pereira, Tania; Mafalda Malafaia; Francisco Silva; Joana Morgado; Antonio Cunha; Hélder F. Oliveira. "Ensemble Strategies for EGFR Mutation Status Prediction in Lung Cancer". Paper presented in 43rd Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2021. Published João Moranguinho; Pereira, Tania; Bernardo Ramos; Joana Morgado; José Luis Costa; Hélder P. Oliveira. "Attention Based Deep Multiple Instance Learning Approach for Lung Cancer Prediction using Histopathological Images". Paper presented in 43rd Annual International Conference of the IEEE Engineering in Medicine and Biology, 2021. Published Bernardo Ramos; Pereira, Tania; João Moura; Joana Morgado; Hélder P. Oliveira. "An Interpretable Approach for Lung Cancer Prediction and Subtype Classification using Gene Expression". Paper presented in 43rd Annual International Conference of the IEEE Engineering in Medicine and Biology, 2021. Published Francisco Silva; Pereira, Tania; Joana Morgado; António Cunha; Hélder P. Oliveira. "The Impact of Interstitial Diseases Patterns on Lung CT Segmentation". Paper presented in 43rd Annual International Conference of the IEEE Engineering in Medicine and Biology, 2021. Published José Mendes; Pereira, Tania; Francisco Silva; Julieta Frade; Joana Morgado; Claúdia Freitas; Eduardo Negrão; et al. "Lung CT Image Synthesis using Generative Adversarial Networks". Paper presented in Medical Image Understanding and Analysis, 2021. Submitted Pereira, Tania; Gadhoumi, Kais; Ma, Mitchell; Colorado, Rene; Kevin, Keenan; Meisel, Karl; Hu, Xiao. "Robust Assessment of Photoplethysmogram Signal Quality in The Presence of Atrial Fibrillation". Paper presented in Computing in Cardiology 2018, Maastrich, 2018. Published • 10.22489/CinC.2018.254 Gadhoumi, Kais; Kevin, Keenan; Pereira, Tania; Colorado, Rene; Meisel, Karl; Hu, Xiao. "A Statistical Comparative Study of Photoplethysmographic Signals in Wrist-Worn and Fingertip Pulse-Oximetry Devices". Paper presented in Computing in Cardiology 2018, Maastritch, 2018. Published • 10.22489/CinC.2018.316 Pereira, Tania; Vilaprinyo, Ester; Sorribas, Albert; Alves, Rui. "Metabolic constraints and quantitative design principles in gene expression during adaptation of yeast to heat shock". Paper presented in 15 International Conference On Molecular Systems Biology (ICMSB2017), Munique, 2017. Published Sorribas, Albert; Vilaprinyo, Ester; Pereira, Tania; Alves, Rui. "To change or not to change: exploring the dynamic gene expression profile in the adaptive response of yeast to heat shock". Paper presented in 15 International Conference On Molecular Systems Biology (ICMSB2017), Munique, 2017. Published Pereira, Tania; Vilaprinyo, Ester; Mária, Virtu; Muguruza, Jose; Solsona, Francesc; Fernandez, Elvira; Betriu, Angels. "Automatic method for the analysis of carotid adventitial vasa vasorum". Paper presented in IEEE International Symposium on Biomedical Imaging, Melbourne, 2017. Published Pereira, Tania; Vilaprinyo, Ester; Alves, Rui. "Design principles for gene expression changes in yeast". Paper presented in 38th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, Orlando, 2016. Published Pereira, Tania; Vilaprinyo, Ester; Alves, Rui. "Quantitative design principles for adaptive responses to environmental stress in yeast". Paper presented in International Conference on Systems Biology (ICSB 2016), Barcelona, 2016. Published Pereira, Tania; Moreira, Tiago; Almeida, Pedro R; Cunha, João P S; Aguiar, Ana. "Fine Grained Stress Assessment in Ecological Conditions". Paper presented in 37th Annual International Conference Of The IEEE Engineering in Medicine and Biology Society, Milao, 2015. Published Vaz, Pedro; Capela, Diana; Pereira, Tânia; Correia, Carlos; Ferreira, Requicha; Humeau-Heurtier, Anne; Cardoso, João. "Use of laser speckle and entropy computation to segment images of diffuse objects with longitudinal motion". Paper presented in Proceedings of SPIE - The International Society for Optical Engineering, Aveiro, 2014. Published • 10.1117/12.2060845 Pereira, Tania; Santos, Ines; Pereira, Telmo Santos; Almeida, Vania; Pereira, Helena; Cardoso, Joao; Correia, Carlos. "Reproducibility of Pulse Wave Analysis and Pulse Wave Velocity in Healthy Subjects". Paper presented in 7th International Joint Conference on Biomedical Engineering Systems and Technologies (BIOSTEC 2014), Angers, 2014. Published • 10.5220/0004802502210228 Pereira, Tania; Sanches, Rui; Reis, Pedro; Simoes, Ricardo; Pego, Jose. "Correlation Study Between Blood Pressure And Pulse Transit Time". Paper presented in Bioengineering (ENBENG), Porto, 2014. Published • 10.1109/IEMBS.2005.1616585 Almeida, Vania; Borba, Joao; Pereira, Tania; Pereira, Helena C.; Cardoso, Joao; Correira, Carlos. "Data Mining Based Methodologies For Cardiac Risk Patterns Identification". Paper presented in 6th International Joint Conference on Biomedical Engineering Systems and Technologies (BIOINFORMATICS 2013), Barcelona, 2013. Published • 10.5220/0004222701270133 Pereira, Helena; Pereira, Tania; Almeida, Vania; Borges, Elisabeth; Figueiras, Edite; Simoes, Jose; Malaquias, J Luís; Correia, Carlos; Cardoso, Joao. "A Novel And Low Cost Acoustic Based Probe For Local Pulse Wave Velocity Estimation". Paper presented in 6th International Joint Conference on Biomedical Engineering Systems and Technologies (BIODEVICES 2013), Barcelona, 2013. Published • 10.5220/0004251900780088 Pereira, Tania; Vaz, Pedro; Oliveira, Tatiana; Santos, Ines; Almeida, Vania; Pereira, Helena; Correia, Carlos; Cardoso, Joao. "New optical probe approach using mixing effect in planar photodiode for biomedical applications". Paper presented in SPIE Optics + Optoelectronics, Praga, 2013. Published • 10.1117/12.2017024 Borges, Elisabeth; Sequeira, Mariana; Cortez, André; Pereira, Helena; Pereira, Tania; Almeida, Vania; Vasconcelos, Teresa; Cardoso, Joao; Correia, Carlos. "Bioimpedance parameters as a risk factor to assess pine decay: An innovative approach to the diagnosis of plant diseases". Paper presented in 6th International Joint Conference on Biomedical Engineering Systems and Technologies (BIODEVICES 2013), Barcelona, 2013. Published • 10.5220/0004230500350046 Pereira, Tania; Santos, Ines; Oliveira, Tatiana; Vaz, Pedro; Pereira, Telmo Santos; Pereira, Helena; Almeida, Vania; Cardoso, Joao; Correia, Carlos. "Local PWV and Other Hemodynamic Parameters Assessment - Validation of a New Optical Technique in an Healthy Population". Paper presented in 6th International Joint Conference on Biomedical Engineering Systems and Technologies (BIOSTEC 2013), Barcelona, 2013. Published • 10.5220/0004237600610069 Almeida, Vania; Borba, Joao; Pereira, Tania; Pereira, Helena C; Cardoso, Joao; Correia, Carlos. "Indices and Repeatability Tests of Cardiovascular Function Performed on the Arterial Distension Waveform". Paper presented in 6th International Joint Conference on Biomedical Engineering Systems and Technologies (BIOSIGNALS 2013), Barcelona, 2013. Published • 10.5220/0004219301380144 Borges, Elisabeth; Sequeira, Mariana; Cortez, André; Pereira, Helena; Pereira, Tania; Almeida, Vania; Vasconcelos, Teresa; et al. "Assessment of Physiological States of Plants in situ - An Innovative Approach to the use of Electrical Impedance Spectroscopy". Paper presented in BIOTECHNO 2013: The Fifth International Conference on Bioinformatics, Biocomputational Systems and Biotechnologies, Lisboa, 2013. Published • ISBN: 978-1-61208-260-8 Almeida, Vania; Borba, Joao; Pereira, Tania; Pereira, Helena; Cardoso, Joao; Correia, C.. "Validation of a waveform delineator device for cardiac studies: Repeatability and data mining analysis". Paper presented in 2012 IEEE 2nd Portuguese Meeting in Bioengineering (ENBENG), 2012. Published • 10.1109/ENBENG.2012.6331339 Pereira, Tania; Correia, Carlos. "Double probe based in piezoelectric sensors for local pulse wave velocity assessment". Paper presented in 2012 IEEE 2nd Portuguese Meeting in Bioengineering (ENBENG), Coimbra, 2012. Published • 10.1109/enbeng.2012.6331386 Pereira, Tania; Oliveira, T.; Cabeleira, Manuel; Matos, Patricia; Pereira, Helena; Almeida, Vania; Borges, Elisabeth; et al. "Signal analysis in a new optical pulse waveform profiler for cardiovascular applications". Paper presented in International conference on signal and image processing and applications, SIPA 2011, Creta, 2011. Published • 10.2316/P.2011.738-067 Pereira, Tania; Oliveira, Ta; Cabeleira, Manuel; Almeida, Vania; Borges, Elisabeth; Pereira, H.; Cardoso, Joao; Correia, Carlos. "Visible and infrared optical probes for hemodynamic parameters assessment". Paper presented in SENSORS, 2011 IEEE, Limerick, 2011. Published • 10.1109/ICSENS.2011.6127106 Pereira, Helena; Pereira, Tania; Almeida, Vania; Maldonado, J.; Malaquias, J.L.; Simões, J.B.; Cardoso, Joao; Correia, Carlos. "New instrumentation for cardiovascular risk assessment: The role of pulse wave velocity". Paper presented in 1st Portuguese Biomedical Engineering Meeting, Lisbon, 2011. Published • 10.1109/ENBENG.2011.6026065 Almeida, Vania; Pereira, Tania; Pereira, Helena; Cardoso, Joao; Correia, Carlos. "A cardiac signal monitoring and processing system". Paper presented in 1st Portuguese Biomedical Engineering Meeting, Lisbon, 2011. Published • 10.1109/ENBENG.2011.6026046 Pereira, Helena; Simoes, J.B.; Malaquias, J.L.; Pereira, Tania; Almeida, Vania; Borges, Elisabeth; Figueiras, Edite; Cardoso, Joao; Correia, Calos. "Double headed probe for local pulse wave velocity estimation: A new device for hemodynamic parameters assessment". Paper presented in 4th International Joint Conference on Biomedical Engineering Systems and Technologies (BIOSIGNALS 2011), Rome, 2011. Published • 10.5220/0003293704440447 Almeida, Vania; Pereira, Tania; Borges, Elisabeth; Pereira, Helena; Cardoso, Joao; Correia, Carlos. "A real time cardiac monitoring system - Arterial pressure waveform capture and analysis". Paper presented in PECCS 2011 - Proceedings of the 1st International Conference on Pervasive and Embedded Computing and Communication Systems, Vilamoura, 2011. Published • 10.5220/0003369600830090 Pereira, Tania; Cabeleira, Manuel; Matos, Patricia; Borges, Elisabeth; Almeida, Vânia; Pereira, Helena; Cardoso, Joao; Correia, Carlos. "Optical methods for local pulse wave velocity assessment". Paper presented in 4th International Joint Conference on Biomedical Engineering Systems and Technologies (BIOSIGNALS 2011), Rome, 2011. Published • 10.5220/0003166800740081 Almeida, Vania; Santos, Patricia; Figueiras, Edite; Borges, Elisabeth; Pereira, Tania; Pereira, Helena; Cardoso, Joao; Correia, Carlos. "Hemodynamic features extraction from a new arterial pressure waveform probe". Paper presented in 4th International Joint Conference on Biomedical Engineering Systems and Technologies (BIOSIGNALS 2011), Rome, 2011. Published • 10.5220/0003148901950200 Almeida, Vania; Pereira, Tania; Borges, Elisabeth; Figueiras, Edite; Cardoso, Jaoa; Correia, Carlos; Pereira, Helena; Malaquias, J.L.; Simões, J.B.. "Synthesized cardiac waveform in the evaluation of Augmentation Index algorithms: Case study for a new wavelet based algorithm". Paper presented in IEEE EMB, Proceedings of the 3rd International Joint Conference on Biomedical Engineering Systems and Technologies (BIOSIGNALS 2010), Valencia, 2010. Published • 10.5220/0002691703850388
Conference poster	Catarina Dias; Gil Pinheiro; Pereira, Tania; António Cunha; Hélder Oliveira. "Mutation status prediction of lung cancer related genes". Paper presented in 25th Portuguese Conference on Pattern Recognition, 2019. Xiuyun Liu; Danilo Cardim; Joseph Donnelly; Pereira, Tania; Nate Tran; Judy Chang; Donald Griesdale; Mypinder S. Sekhon; Xiao Hu. "IntracranialPressure and Jugular Venous Pressure in Patients with Hypoxic Ischemic BrainInjury after Cardiac Arrest". Paper presented in International Symposium onIntracranial Pressure and Neuromonitoring, 2019. Xiuyun Liu; Danilo Cardim; Joseph Donnelly; Pereira, Tania; Nate Tran; Judy Chang; Donald Griesdale; Mypinder S. Sekhon; Xiao Hu. "IntracranialPressure Determines Arterial Blood Pressure through Sympathetic Activities inhigh frequency and in low frequency through Cushing response". Paper presented in International Symposium on Intracranial Pressure andNeuromonitoring, 2019. Pereira, Tania; Gadhoumi, Kais; Ma, Mitchell; Colorado, Rene; Kevin, Keenan; Meisel, Karl; Hu, Xiao. "Robust Assessment of Photoplethysmogram Signal Quality in The Presence of Atrial Fibrillation". Paper presented in Computing in Cardiology 2018, 2018. 10.22489/CinC.2018.254 Gadhoumi, Kais; Kevin, Keenan; Pereira, Tania; Colorado, Rene; Meisel, Karl; Hu, Xiao. "A Statistical Comparative Study of Photoplethysmographic Signals in Wrist-Worn and Fingertip Pulse-Oximetry Devices". Paper presented in Computing in Cardiology 2018, 2018. 0.22489/CinC.2018.316 Pereira, Tania; Vilaprinyo, Ester; Mária, Virtu; Muguruza, Jose; Solsona, Francesc; Fernandez, Elvira; Betriu, Angels; Alves, Rui. "Automatic method for the analysis of carotid adventitial vasa vasorum". Paper presented in IEEE International Symposium on Biomedical Imaging, 2017. Pereira, Tania; Vilaprinyo, Ester; Alves, Rui. "Quantitative design principles for adaptive responses to environmental stress in yeast". Paper presented in International Conference on Systems Biology (ICSB 2016), 2016. Pereira, Tania; Vilaprinyo, Ester; Alves, Rui. "Design principles for gene expression changes in yeast". Paper presented in 38th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC16), 2016. Pereira, Tania; Moreira, Tiago; Almeida, Pedro R; Cunha, João P S; Aguiar, Ana. "Fine Grained Stress Assessment in Ecological Conditions". Paper presented in 37th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBS), 2015. Pereira, Tania; Santos, Ines; Pereira, Telmo Santos; Santos, Helder; Almeida, Vania; Pereira, Helena; Cardoso, João; Correira, Carlos. "Reproducibility of Pulse Wave Analysis and Pulse Wave Velocity in Healthy Subjects". Paper presented in 7th International Joint Conference on Biomedical Engineering Systems and Technologies (BIOSTEC 2014), 2014. 10.5220/0004802502210228 Pereira, Tânia; Correia, Carlos. "Double probe based in piezoelectric sensors for local pulse wave velocity assessment". Paper presented in 2012 IEEE 2nd Portuguese Meeting in Bioengineering (ENBENG), 2012. 10.1109/enbeng.2012.6331386 Pereira, Tania; Oliveira, Tatiana; Cabeleira, Manuel; Almeida, Vania; Borges, Elisabeth; Pereira, Helena; Cardoso, Joao; Correia, Carlos. "Visible and infrared optical probes for hemodynamic parameters assessment". Paper presented in SENSORS, 2011 IEEE, 2011. 10.1109/icsens.2011.6127106
Journal article	Fonseca, João; Liu, Xiuyun; Oliveira, Hélder P.; Pereira, Tania. "Mortality prediction using medical time series on TBI patients". Computer Methods and Programs in Biomedicine 242 (2023): 107806. http://dx.doi.org/10.1016/j.cmpb.2023.107806. 10.1016/j.cmpb.2023.107806 Charlton, Peter H; Allen, John; Bailón, Raquel; Baker, Stephanie; Behar, Joachim A; Chen, Fei; Clifford, Gari D; et al. "The 2023 wearable photoplethysmography roadmap". Physiological Measurement 44 11 (2023): 111001. http://dx.doi.org/10.1088/1361-6579/acead2. 10.1088/1361-6579/acead2 Sousa, Joana Vale; Matos, Pedro; Silva, Francisco; Freitas, Pedro; Oliveira, Hélder P.; Pereira, Tania. "Single Modality vs. Multimodality: What Works Best for Lung Cancer Screening?". Sensors 23 12 (2023): 5597. http://dx.doi.org/10.3390/s23125597. 10.3390/s23125597 Mendes, José; Pereira, Tania; Silva, Francisco; Frade, Julieta; Morgado, Joana; Freitas, Cláudia; Negrão, Eduardo; et al. "Lung CT image synthesis using GANs". Expert Systems with Applications 215 (2023): 119350. http://dx.doi.org/10.1016/j.eswa.2022.119350. Open access • Published • 10.1016/j.eswa.2022.119350 Ribeiro, Gonçalo; Pereira, Tania; Silva, Francisco; Sousa, Joana; Carvalho, Diogo Costa; Dias, Sílvia Costa; Oliveira, Hélder P.. "Learning Models for Bone Marrow Edema Detection in Magnetic Resonance Imaging". Applied Sciences 13 2 (2023): 1024. http://dx.doi.org/10.3390/app13021024. Open access • Published • 10.3390/app13021024 Pereira, Tania; Cunha, António; Oliveira, Hélder P.. "Special Issue on Novel Applications of Artificial Intelligence in Medicine and Health". Applied Sciences 13 2 (2023): 881. http://dx.doi.org/10.3390/app13020881. 10.3390/app13020881 Pinheiro, Cláudia; Silva, Francisco; Pereira, Tania; Oliveira, Hélder P.. "Semi-Supervised Approach for EGFR Mutation Prediction on CT Images". Mathematics 10 22 (2022): 4225. http://dx.doi.org/10.3390/math10224225. Open access • Published • 10.3390/math10224225 Malafaia, Mafalda; Silva, Francisco; Neves, Ines; Pereira, Tania; Oliveira, Helder P.. "Robustness Analysis of Deep Learning-Based Lung Cancer Classification Using Explainable Methods". IEEE Access 10 (2022): 112731-112741. http://dx.doi.org/10.1109/access.2022.3214824. Open access • Published • 10.1109/access.2022.3214824 Sousa, Joana; Pereira, Tania; Neves, Inês; Silva, Francisco; Oliveira, Hélder P.. "The Influence of a Coherent Annotation and Synthetic Addition of Lung Nodules for Lung Segmentation in CT Scans". Sensors 22 9 (2022): 3443. http://dx.doi.org/10.3390/s22093443. Open access • Published • 10.3390/s22093443 Pereira, Tania; Frade, Julieta; Joana Morgado; SILVA, FRANCISCO; Claúdia Freitas; Eduardo Negrão; Madureira, António; et al. "Multiple Instance Learning for Lung Pathophysiological Findings Detection using CT Scans". Medical & Biological Engineering & Computing (2022): Accepted Silva, Francisco; Pereira, Tania; Neves, Inês; Morgado, Joana; Freitas, Cláudia; Malafaia, Mafalda; Sousa, Joana; et al. "Towards Machine Learning-Aided Lung Cancer Clinical Routines: Approaches and Open Challenges". Journal of Personalized Medicine 12 3 (2022): 480. http://dx.doi.org/10.3390/jpm12030480. 10.3390/jpm12030480 Sousa, Joana; Pereira, Tania; Silva, Francisco; Silva, Miguel C.; Vilares, Ana T.; Cunha, António; Oliveira, Hélder P.. "Lung Segmentation in CT Images: A Residual U-Net Approach on a Cross-Cohort Dataset". Applied Sciences 12 4 (2022): 1959. http://dx.doi.org/10.3390/app12041959. 10.3390/app12041959 Pereira, Tania; Morgado, Joana; Silva, Francisco; Pelter, Michele M.; Dias, Vasco Rosa; Barros, Rita; Freitas, Cláudia; et al. "Sharing Biomedical Data: Strengthening AI Development in Healthcare". Healthcare 9 7 (2021): 827. http://dx.doi.org/10.3390/healthcare9070827. Published • 10.3390/healthcare9070827 Freitas, Cláudia; Sousa, Catarina; Machado, Francisco; Serino, Mariana; Santos, Vanessa; Cruz-Martins, Natália; Teixeira, Armando; et al. "The Role of Liquid Biopsy in Early Diagnosis of Lung Cancer". Frontiers in Oncology 11 (2021): http://dx.doi.org/10.3389/fonc.2021.634316. Published • 10.3389/fonc.2021.634316 Morgado, Joana; Pereira, Tania; Silva, Francisco; Freitas, Cláudia; Negrão, Eduardo; de Lima, Beatriz Flor; da Silva, Miguel Correia; et al. "Machine Learning and Feature Selection Methods for EGFR Mutation Status Prediction in Lung Cancer". Applied Sciences 11 7 (2021): 3273. http://dx.doi.org/10.3390/app11073273. Published • 10.3390/app11073273 Zhang, Oliver; Ding, Cheng; Pereira, Tania; Xiao, Ran; Gadhoumi, Kais; Meisel, Karl; Lee, Randall J.; Chen, Yiran; Hu, Xiao. "Explainability Metrics of Deep Convolutional Networks for Photoplethysmography Quality Assessment". IEEE Access 9 (2021): 29736-29745. http://dx.doi.org/10.1109/access.2021.3054613. Open access • Published • 10.1109/access.2021.3054613 Silva, Francisco; Pereira, Tania; Morgado, Joana; Frade, Julieta; Mendes, Jose; Freitas, Claudia; Negrao, Eduardo; et al. "EGFR Assessment in Lung Cancer CT Images: Analysis of Local and Holistic Regions of Interest Using Deep Unsupervised Transfer Learning". IEEE Access 9 (2021): 58667-58676. http://dx.doi.org/10.1109/access.2021.3070701. Published • 10.1109/access.2021.3070701 Cheng Ding; Pereira, Tania; Ran Xiao; Nate Tran; Karl Meisel; Randall J Lee; Xiao Hu. "Impact of Label Noise on the Learning Based Models for a Binary Classification of Physiological Signal". Artificial Intelligence in Medicine (2021): Submitted Pereira, Tania; Freitas, Cláudia; Costa, José Luis; Morgado, Joana; Silva, Francisco; Negrão, Eduardo; de Lima, Beatriz Flor; et al. "Comprehensive Perspective for Lung Cancer Characterisation Based on AI Solutions Using CT Images". Journal of Clinical Medicine 10 1 (2020): 118. http://dx.doi.org/10.3390/jcm10010118. Published • 10.3390/jcm10010118 Silva, Francisco; Pereira, Tania; Frade, Julieta; Mendes, José; Freitas, Claudia; Hespanhol, Venceslau; Costa, José Luis; Cunha, António; Oliveira, Hélder P.. "Pre-Training Autoencoder for Lung Nodule Malignancy Assessment Using CT Images". Applied Sciences 10 21 (2020): 7837. http://dx.doi.org/10.3390/app10217837. Published • 10.3390/app10217837 Pereira, Tania; Gil Pinheiro; Catarina Dias; Claúdia Freitas; Hespanhol Venceslau; José Luis Costa; António Cunha; Hélder Oliveira. "Identifying relationships between imaging phenotypes and lung cancer-related mutation status: EGFR and KRAS". Scientific Reports (2020): Open access • Published • 10.1038/s41598-020-60202-3 Pereira, Tania; Tran, Nate; Gadhoumi, Kais; Pelter, Michele M.; Do, Duc H.; Lee, Randall J.; Colorado, Rene; Meisel, Karl; Hu, Xiao. "Photoplethysmography based atrial fibrillation detection: a review". npj Digital Medicine 3 1 (2020): http://dx.doi.org/10.1038/s41746-019-0207-9. Open access • Published • 10.1038/s41746-019-0207-9 Pereira, Tania; Ding, Cheng; Gadhoumi, Kais; Tran, Nate; Colorado, Rene A; Meisel, Karl; Hu, Xiao. "Deep learning approaches for plethysmography signal quality assessment in the presence of atrial fibrillation". Physiological Measurement 40 12 (2019): 125002. http://dx.doi.org/10.1088/1361-6579/ab5b84. Published • 10.1088/1361-6579/ab5b84 Pereira, Tania; Betriu, Angels; Alves, Rui. "Non-invasive imaging techniques and assessment of carotid vasa vasorum neovascularization: Promises and pitfalls". Trends in Cardiovascular Medicine 29 2 (2019): 71-80. http://dx.doi.org/10.1016/j.tcm.2018.06.007. Published • 10.1016/j.tcm.2018.06.007 Pereira, Tania; Gadhoumi, Kais; Ma, Mitchell; Xiuyun, Liu; Xiao, Ran; Colorado, Rene A.; Keenan, Kevin J.; Meisel, Karl; Hu, Xiao. "A Supervised Approach to Robust Photoplethysmography Quality Assessment". IEEE Journal of Biomedical and Health Informatics (2019): 1-1. http://dx.doi.org/10.1109/jbhi.2019.2909065. Published • 10.1109/jbhi.2019.2909065 Pereira, Tania; Muguruza, Jose; Mária, Virtu; Vilaprinyo, Ester; Sorribas, Albert; Fernandez, Elvira; Fernandez-Armenteros, Jose Manuel; et al. "Automatic Methods for Carotid Contrast-Enhanced Ultrasound Imaging Quantification of Adventitial Vasa Vasorum". Ultrasound in Medicine & Biology 44 12 (2018): 2780-2792. http://dx.doi.org/10.1016/j.ultrasmedbio.2018.07.027. Published • 10.1016/j.ultrasmedbio.2018.07.027 Pereira, Tania; Vilaprinyo, Ester; Belli, Gemma; Herrero, Enric; Salvado, Baldiri; Sorribas, Albert; Altés, Gisela; Alves, Rui. "Quantitative Operating Principles of Yeast Metabolism during Adaptation to Heat Stress". Cell Reports 22 9 (2018): 2421-2430. http://dx.doi.org/10.1016/j.celrep.2018.02.020. Published • 10.1016/j.celrep.2018.02.020 Paiva, Joana S.; Cardoso, João; Pereira, Tânia. "Supervised learning methods for pathological arterial pulse wave differentiation: A SVM and neural networks approach". International Journal of Medical Informatics 109 (2018): 30-38. http://dx.doi.org/10.1016/j.ijmedinf.2017.10.011. Published • 10.1016/j.ijmedinf.2017.10.011 Pereira, Tânia; Almeida, Pedro R.; Cunha, João P.S.; Aguiar, Ana. "Heart rate variability metrics for fine-grained stress level assessment". Computer Methods and Programs in Biomedicine 148 (2017): 71-80. http://dx.doi.org/10.1016/j.cmpb.2017.06.018. Published • 10.1016/j.cmpb.2017.06.018 Pereira, Tânia; Almeida, Pedro R; Cunha, João P S; Aguiar, Ana. "Validation of a low intrusiveness heart rate sensor for stress assessment". Biomedical Physics & Engineering Express 3 1 (2017): 017004. http://dx.doi.org/10.1088/2057-1976/3/1/017004. Published • 10.1088/2057-1976/3/1/017004 Pereira, Tânia; Nogueira-Silva, Cristina; Simoes, Ricardo. "Normal range and lateral symmetry in the skin temperature profile of pregnant women". Infrared Physics & Technology 78 (2016): 84-91. http://dx.doi.org/10.1016/j.infrared.2016.07.019. Published • 10.1016/j.infrared.2016.07.019 Vaz, Pedro; Pereira, Tânia; Figueiras, Edite; Correia, Carlos; Humeau-Heurtier, Anne; Cardoso, João. "Which wavelength is the best for arterial pulse waveform extraction using laser speckle imaging?". Biomedical Signal Processing and Control 25 (2016): 188-195. http://dx.doi.org/10.1016/j.bspc.2015.11.013. Published • 10.1016/j.bspc.2015.11.013 Pereira, Tania. "Hemodynamic Parameters for Cardiovascular Risk Assessment". Mathews Journal of Cardiology 1 1 (2016): http://www.mathewsopenaccess.com/PDF/Cardiology/M_J_Cardiol_1_1_e001.pdf. Published • ISSN: 2572-6420 Pereira, Tânia; Correia, Carlos; Cardoso, João. "Novel Methods for Pulse Wave Velocity Measurement". Journal of Medical and Biological Engineering 35 5 (2015): 555-565. http://dx.doi.org/10.1007/s40846-015-0086-8. Published • 10.1007/s40846-015-0086-8 Pereira, Tânia; Paiva, Joana S.; Correia, Carlos; Cardoso, João. "An automatic method for arterial pulse waveform recognition using KNN and SVM classifiers". Medical & Biological Engineering & Computing 54 7 (2015): 1049-1059. http://dx.doi.org/10.1007/s11517-015-1393-5. Published • 10.1007/s11517-015-1393-5 Pereira, Tânia; Pereira, Telmo Santos; Santos, Helder; Correia, Carlos; Cardoso, João. "Arterial pulse pressure waveform monitoring by novel optical probe". International Journal of Cardiology 179 (2015): 95-96. http://dx.doi.org/10.1016/j.ijcard.2014.10.050. Published • 10.1016/j.ijcard.2014.10.050 Pereira, Tania; Santos, Helder; Pereira, Helena; Pereira, Telmo Santos; Correia, Carlos; Cardoso, Joao. "Assessment of carotid distention waveform and local pulse wave velocity determination by a novel optical system". Artery Research 8 4 (2014): 135. http://dx.doi.org/10.1016/j.artres.2014.09.107. Published • 10.1016/j.artres.2014.09.107 Pereira, Tânia; Santos, Inês; Oliveira, Tatiana; Vaz, Pedro; Pereira, Telmo; Santos, Helder; Pereira, Helena; Correia, Carlos; Cardoso, João. "Pulse pressure waveform estimation using distension profiling with contactless optical probe". Medical Engineering & Physics 36 11 (2014): 1515-1520. http://dx.doi.org/10.1016/j.medengphy.2014.07.014. Published • 10.1016/j.medengphy.2014.07.014 Almeida, Vania; Borba, Joao; Pereira, H. Catarina; Pereira, Tânia; Correia, Carlos; Pêgo, Mariano; Cardoso, João. "Cardiovascular risk analysis by means of pulse morphology and clustering methodologies". Computer Methods and Programs in Biomedicine 117 2 (2014): 257-266. http://dx.doi.org/10.1016/j.cmpb.2014.06.010. Published • 10.1016/j.cmpb.2014.06.010 Pereira, Tânia; Sequeira, Mariana; Vaz, Pedro; Pereira, Helena C.; Correia, Carlos; Cardoso, João. "Submicron Surface Vibration Profiling Using Doppler Self-Mixing Techniques". Advances in Optics 2014 (2014): 1-7. http://dx.doi.org/10.1155/2014/576380. Published • 10.1155/2014/576380 Pereira, Helena; Pereira, Telmo Santos; Maldonado, Joao; Pereira, Tania; Almeida, Vania; Correia, Carlos. "Non-invasive assessment of local pulse wave velocity using electromechanical sensors: Feasibility study in a healthy population". Artery Research 8 4 (2014): https://www.sciencedirect.com/science/article/pii/S1872931214002415. Published • https://doi.org/10.1016/j.artres.2014.09.179 Almeida, Vânia; Vieira, João; Santos, Pedro; Pereira, Tânia; Pereira, H.; Correia, Carlos; Pego, Mariano; Cardoso, João. "Machine Learning Techniques for Arterial Pressure Waveform Analysis". Journal of Personalized Medicine 3 2 (2013): 82-101. http://dx.doi.org/10.3390/jpm3020082. Published • 10.3390/jpm3020082 Pereira, Tania; Oliveira, Tatiana; Cabeleira, Manuel; Pereira, Helena; Almeida, Vania; Cardoso, Joao; Correia, Carlos. "Comparison of Low-Cost and Noninvasive Optical Sensors for Cardiovascular Monitoring". IEEE Sensors Journal 13 5 (2013): 1434-1441. http://dx.doi.org/10.1109/jsen.2012.2236549. Published • 10.1109/jsen.2012.2236549 Pereira, Tania; Santos, Ines; Oliveira, Tania; Vaz, P.; Correia, Tobias; Pereira, Telmo; Santos, Helder; et al. "Characterization of Optical System for Hemodynamic Multi-Parameter Assessment". Cardiovascular Engineering and Technology 4 1 (2013): 87-97. http://www.scopus.com/inward/record.url?eid=2-s2.0-84874581628&partnerID=MN8TOARS. Published • 10.1007/s13239-013-0125-y Pereira, Tania; Vaz, Pedro; Oliveira, T.; Santos, Ines; Pereira, Helena; Almeida, Vânia; Correia, Carlos; Cardoso, Joao. "Empirical mode decomposition for self-mixing Doppler signals of hemodynamic optical probes". Physiological Measurement 34 3 (2013): 377-390. http://www.scopus.com/inward/record.url?eid=2-s2.0-84874465200&partnerID=MN8TOARS. Published • 10.1088/0967-3334/34/3/377 Almeida, Vania; Pereira, Helena; Pereira, Tania; Figueiras, Edite; Borges, Elisabeth; Cardoso, Joao; Correia, Carlos. "Piezoelectric probe for pressure waveform estimation in flexible tubes and its application to the cardiovascular system". Sensors and Actuators A: Physical 169 1 (2011): 217-226. http://dx.doi.org/10.1016/j.sna.2011.04.048. Published • 10.1016/j.sna.2011.04.048 Pereira, Helena; Pereira, Tania; Almeida, V.; Borges, Elisabeth; Figueiras, E.; Simoes, Jose; Malaquias, Jose; Cardoso, Joao; Correia, Correia. "Characterization of a double probe for local pulse wave velocity assessment". Physiological Measurement 31 11 (2010): 1449-1465. http://www.scopus.com/inward/record.url?eid=2-s2.0-78149329159&partnerID=MN8TOARS. Published • 10.1088/0967-3334/31/11/004
Journal issue	Pereira, Tania. "Special Issue "Radiogenomics: From Imaging to Genotype Characterization"". Applied Sciences (2021): Invited editor

Intellectual property

Provisional application for patent

2012. "Patent of national inventions n: 106527; Ref: DMP/01/2012/374456 Date: 2012/11/05, Optical appa- ratus for pulse wave velocity measurement based on self-mixing eect using semiconductor lasers.".

Other

Other output

e-ECHO: Software that identifies the neovascularization in the carotid from Ultrasound image. Software that identifies the neovascularization in the carotid from Ultrasound image. This tool is based on scientific work: "AutomaticMethods for Carotid Contrast-Enhanced Ultrasound Imaging Quantification of adventitial Vasa Vasorum", Ultrasound in Medicine & Biology 44 (12): 2780-2792 (http://dx.doi.org/10.1016/j.ultrasmedbio.2018.07.027) and it has been tested in the clinical environment. 2017. Pereira, Tania.

Activities

Oral presentation

	Presentation title	Event name Host (Event location)
2021/01/29	Artificial Intelligence - the Future	Escola da Imagiologia Sociedade Portuguesa de Pneumologia (Lisbon, Portugal)
2017	Metabolic constraints and quantitative design principles in gene expression during adaption of yeast to heat shock	15 International Conference On Molecular Systems Biology (ICMSB2017) (Munique, Germany)
2013	Local PWV and other Hemodynamic Parameters Assessment: Validation of a New Optical Technique in an Healthy Population	6th International Joint Conference on Biomedical Engineering Systems and Technologies (BIOSTEC 2013) (Barcelona, Spain)
2013	New optical probe approach using mixing effect in planar photodiode for biomedical applications	SPIE Optics + Optoelectronics (Praga, Czech Republic)
2011	Optical sensors for cardiovascular assessment	Hospital and Medical Instrumentation subject of 3th year of Master in Biomedical Engineering - specialization in Biomedical Instrumentation and Biomaterials (Coimbra, Portugal)
2011	Hemodynamic Monitoring	Centro Ciência Viva Rómulo de Carvalho, University of Coimbra (Coimbra, Portugal)
2011	Optical methods for local pulse wave velocity	4th International Joint Conference on Biomedical Engineering Systems and Technologies (BIOSTEC 2011) (Rome)
2011	Signal Analysis in a new optical pulse waveform profiler for cardiovascular applications	International Conference on Signal and Image Processing and Applications (Creta, Greece)
2009	Electromechanical devices for hemodynamic assessment	i-techPartner Growth Academy (Coimbra, Portugal)

Supervision

	Thesis Title Role	Degree Subject (Type) Institution / Organization
2022/09 - Current	Efficient Multimodal Radiopathomics Signatures for Precision Oncology Co-supervisor of João Nunes	Doctoral Program in Electrical and Computer Engineering (PhD) Universidade do Porto Faculdade de Engenharia, Portugal
2022/09 - Current	Deep Learning Multimodal Approaches for Lung Cancer Characterization Supervisor of Joana Sousa	Doctoral Program in Electrical and Computer Engineering (PhD) Universidade do Porto Faculdade de Engenharia, Portugal
2021/09 - Current	A Causal Learning Approach for Lung Cancer Characterisation on Multimodal Data Supervisor of Francisco Carvalho Moreira da Silva	Doctoral Program in Computer Science (PhD) Universidade do Porto Faculdade de Ciências, Portugal
2020/11/01 - Current	Deteção de anormalidades em vídeos de cápsulas endoscópicas através de aprendizagem ativa Co-supervisor of Ana Monteiro	Bioinformática (Master) Universidade de Trás-os-Montes e Alto Douro, Portugal
2021/09 - 2033/02	Breast Cancer Radiogenomics Co-supervisor of Ana Silva	Master in Electrical and Computer Engineering (Master) Universidade do Porto Faculdade de Engenharia, Portugal
2021/09 - 2022/09	Learning models for bone segmentation in radiological images Co-supervisor of Daniela Filipa Oliveira Faria	Master in Electrical and Computers Engineering (Master) Universidade do Porto Faculdade de Engenharia, Portugal
2021/09 - 2022/09	Learning models for bone marrow edema characterization in radiological images Co-supervisor of Gonçalo José Marques Ribeiro	Master in Electrical and Computers Engineering (Master) Universidade do Porto Faculdade de Engenharia, Portugal
2021/09 - 2022/09	Machine Learning-based approaches for microbiome characterization in cancer Supervisor of Pedro Gil Lima Freitas	Master in Electrical and Computers Engineering (Master) Universidade do Porto Faculdade de Engenharia, Portugal
2021/09 - 2022/09	AI-based methods for cancer cells quantification using whole slide imaging Supervisor of Sara Carvalho Alves	Master in Electrical and Computers Engineering (Master) Universidade do Porto Faculdade de Engenharia, Portugal
2021/09 - 2022/09	AI-based cancer characterisation using multimodal data Co-supervisor of Pedro Mendes Antunes de Matos	Master in Bioengineering (Master) Universidade do Porto Faculdade de Engenharia, Portugal
2021/09 - 2022/09	AI-based cancer characterisation using semi-supervised learning algorithms Co-supervisor of Cláudia Patrícia Ferreira Araújo Pinheiro	Master in Data Science and Engineering (Master) Universidade do Porto Faculdade de Engenharia, Portugal
2021/09 - 2022/09	Data Preprocessing Strategies in Cancer Stage Prediction Supervisor of Ana Maria Mendes Moreira	Master in Data Science and Engineering (Master) Universidade do Porto Faculdade de Engenharia, Portugal
2021/09 - 2022/09	Neuroblastoma Cancer Radiognomics Co-supervisor of Mafalda Malafaia Baptista de Oliveira	Master in Bioengineering (Master) Universidade do Porto Faculdade de Engenharia, Portugal
2021/09 - 2022/09	A Deep Learning Approach for Predicting Response to Therapy in Cancer Supervisor of José Miguel da Costa Simões	Master in Informatics and Computing Engineering (Master) Universidade do Porto Faculdade de Engenharia, Portugal
2021/09 - 2022/09	AI-based models to predict the heart rate using PPG signal from wearables during physical exercise Supervisor of Lucas Ribeiro	Master in Informatics and Computing Engineering (Master)
2020/01 - 2022/09	Pancreatric cancer characterization using machine learning in CT Images Co-supervisor of Rita Alves	Master in Biomedical Engineering (Master) Universidade do Porto Faculdade de Engenharia, Portugal
2021/07 - 2022/07	AI-based models to predict the Traumatic Brain Injury outcome Supervisor of João Pedro Barbosa Fonseca	Master in Bioengineering (Master) Universidade do Porto Faculdade de Engenharia, Portugal
2021/01/01 - 2022/07	Unsupervised methods for lung cancer characterization using CT images Supervisor of Marco Ferreira	Internship (Other) Universidade do Porto Faculdade de Engenharia, Portugal
2021/09 - 2022/06	Designing a software for the pre-operative planning of DIEP-based breast reconstruction Co-supervisor of Miguel Romariz	Master in Informatics and Computing Engineering (Master) Universidade do Porto Faculdade de Engenharia, Portugal
2020/10/10 - 2022/01	Neural networks for EGFR mutation status prediction using CT images Supervisor	Internship (Other) Universidade do Porto Faculdade de Engenharia, Portugal
2020/10/10 - 2022/01	Neural networks for EGFR mutation status prediction using CT images Supervisor	Internship (Other) Universidade do Porto Faculdade de Engenharia, Portugal
2020/10/15 - 2021/12	Lung Computed Tomography 3D Image Synthesis using Generative Adversarial Networks Co-supervisor of Artur Ferreira	Integrated Master in Engineering Computer Networks and Systems (Master) Universidade do Porto Faculdade de Ciências, Portugal
2020/09/07 - 2021/09	Development of a Robust Method for Lung Segmentation in CT Images Supervisor of Joana Sousa	Integrated Master in Bioengineering (Master) Universidade do Porto Faculdade de Engenharia, Portugal
2020/10/01 - 2021/07	Ensemble Methods for Lung Cancer Gene Mutation Prediction Supervisor of Alexandra Ventura	Integrated Master in Electrical and Computer Engineering (Master) Universidade do Porto Faculdade de Engenharia, Portugal
2020/10/01 - 2021/07	Computer Vision approach for bone marrow edema detection in Rx images Co-supervisor of Joao Franco	Master in Informatics and Computing Engineering (Master) Universidade do Porto Faculdade de Engenharia, Portugal
2020/11/01 - 2021/05	Lung cancer-related genes mutation status prediction using ensemble methods over sparse clinical data Co-supervisor of Joana Morgado	Universidade do Porto Faculdade de Ciências, Portugal
2020/03/01 - 2021/02/10	Development of deep learning solutions for histopathological images characterization of lung cancer Supervisor of João Moura	Master in Informatics Engineering (Master) Universidade do Porto, Portugal
2020/03/01 - 2021/02/10	Development of deep learning solutions for lung tumor prediction using genomics data Supervisor of Bernardo Ramos	Master of Informatics Engineering (Master) Universidade do Porto, Portugal
2019/09 - 2020/09/15	Abnormalities Detection on Videos of Endoscopic Capsule Co-supervisor of Inês Xavier	Integrated Master in Electrical and Computer Engineering (Master) Universidade do Porto Faculdade de Engenharia, Portugal
2020/02/01 - 2020/07/31	Comparison of AI-Models for Lung Tumor Segmentation Supervisor	Universidade do Porto Faculdade de Engenharia, Portugal
2020/02/01 - 2020/07/31	Deep learning methods and Biomedical Applications Supervisor	Internship (Other) Universidade do Porto Faculdade de Engenharia, Portugal
2020/02/01 - 2020/07/31	Deep learning methods and Biomedical Applications Supervisor	Internship (Other) Universidade do Porto Faculdade de Engenharia, Portugal
2020/02 - 2020/07/31	Comparison of AI-Models for Lung Segmentation Supervisor	Universidade do Porto Faculdade de Engenharia, Portugal
2019/09 - 2020/07/20	Feature engineering for lung cancer gene mutation prediction Supervisor of Julieta Frade	Integrated Master in Informatics and Computing Engineering (Master) Universidade do Porto Faculdade de Engenharia, Portugal
2019/09 - 2020/07/20	Transfer learning on lung cancer gene mutation status prediction Supervisor of Francisco Silva	Integrated Master in Electrical and Computer Engineering (Master) Universidade do Porto Faculdade de Engenharia, Portugal
2019/09 - 2020/07/20	Synthesizing Artificial Thoracic CT Images Using Generative Models Co-supervisor of José Mendes	Integrated Master in Informatics and Computing Engineering (Master) Universidade do Porto Faculdade de Engenharia, Portugal
2016/09 - 2019/05	e-ECHO. Automatic analysis of vasa vasorum in carotid Co-supervisor of Jose Abel	(MSc Thesis) of Master in Computer Science Universitat de Lleida, Spain
2013/01 - 2018/01	Automatic detection of arterial pulse pressure waveform using machine learning techniques Co-supervisor of Joana Paiva	Internship (Other) Universidade de Coimbra, Portugal
2016/09 - 2017/09	Development the mathematical model of glycerol Co-supervisor of Gisela Altes	Final Project of Bachelor (Degree) Institut de Recerca Biomèdica de Lleida, Spain
2016/09 - 2016/12	Combination of mathematical model of gliciolisys and trehalose Co-supervisor of Francesc Ganau	Final Project of Bachelor (Degree) Institut de Recerca Biomèdica de Lleida, Spain
2014/06 - 2014/09	Signal processing algorithms of self-mixing signals Co-supervisor of Mariana Nogueira	Summer Internship (Other) Universidade de Coimbra, Portugal
2013/06 - 2013/09	Signal processing algorithms of self-mixing signals Co-supervisor of Ana Tomé	Summer Internship (Other) Universidade de Coimbra, Portugal
2012/09 - 2013/03	Analysis and comparison of pulse waveforms form invasive and optical system Co-supervisor of Sofia Prazeres	Internship (Other) Universidade de Coimbra, Portugal
2012/06 - 2012/09	Development a new test benches for optical probes Co-supervisor of Daniel Barata	Summer Internship (Other) Universidade de Coimbra, Portugal
2012/06 - 2012/09	Optimization a graphical user interface for Getpulse system Co-supervisor of Nuno Cantao	Summer Internship (Other) Universidade de Coimbra, Portugal
2011/09 - 2012/09	Pre-Clinical Validation Study of Optical Probes for Hemodynamic Parameters Assessment Co-supervisor of Ines Santos	(MSc Thesis) of Integrated Master in Biomedical Engineering (Master) Universidade de Coimbra, Portugal
2011/09 - 2012/09	Design of an Optical Probe Based on Coherent Light to Assess Hemodynamic Parameters Supervisor of Pedro Vaz	(MSc Thesis) of Integrated Master in Biomedical Engineering from FCTUC (Master) Universidade de Coimbra, Portugal
2011/06 - 2011/09	Development a graphical user interface for Getpulse system Co-supervisor of Tobias Correia	Summer Internship (Other) Universidade de Coimbra, Portugal
2011/06 - 2011/09	Development a novel algorithms for pulse wave analysis Co-supervisor of Patrícia Oliveira	Summer Internship (Other) Universidade de Coimbra, Portugal
2010 - 2011	Construction of Optical Probes for Arterial Pulse Wave Assessment Co-supervisor of Tatiana Oliveira	(MSc Thesis) of Integrated Master in Biomedical Engineering (Master) Universidade de Coimbra, Portugal
2010/06 - 2010/09	Development a novel algorithms for pulse wave velocity determination Co-supervisor of Susana Cerqueira	Summer Internship (Specialization course) Universidade de Coimbra, Portugal
2009 - 2010	Optical measurement of the arterial pulse wave and determination of pulse wave velocity Co-supervisor of Manuel Cabeleira	Integrated Master in Biomedical Engineering from Faculty of Sciences and Technology of University of Coimbra (Master) Universidade de Coimbra, Portugal

Jury of academic degree

	Topic Role	Candidate name (Type of degree) Institution / Organization
2021/12	Computer Vision algorithm for Determination of sulfonamides in water (Thesis) Main arguer	Inês Baptista da Rocha (Master) Universidade do Porto Faculdade de Ciências, Portugal
2021/10	Lung Segmentation in CT Images: A CNN U-Net hybrid approach on a cross-cohort dataset Supervisor	Joana Vale Amaro de Sousa (Master) Universidade do Porto Faculdade de Engenharia, Portugal
2021/07	Image modality classification in dermatology (Thesis) Main arguer	Ana Catarina Falcão Morgado (Master) Universidade do Porto Faculdade de Engenharia, Portugal
2021/07	Detection of Epilepsy in EEGs using sequence models (Thesis) Main arguer	Miguel Filipe Saraiva Marques (Master) Universidade do Porto Faculdade de Engenharia, Portugal
2021/07	Ensemble Methods for Lung Cancer Gene Mutation Prediction Supervisor	Alexandra Costa Ventura (Master) Universidade do Porto Faculdade de Engenharia, Portugal
2021/06	Estimação das propriedades óticas de tecidos a partir de dados de reflectância difusa usando modelos de aprendizagem automática (Thesis) Main arguer	Luis Emanuel Pereira Pinto Fernandes (Master) Instituto Politécnico do Porto, Portugal
2021/03	Deep Learning Solutions for Lung Cancer Characterization in Histopathological Images Supervisor	João Moranguinho Bastardo Moura (Master) Universidade do Porto Faculdade de Engenharia, Portugal
2021/03	An Explainable Approach for Lung Cancer Classification and Integrative Survival Analysis using Omics Data Supervisor	Bernardo Manuel Faria Ramos (Master) Universidade do Porto Faculdade de Engenharia, Portugal
2020/12/09	Conjuntos de Imagens para Sistemas de Avaliação de Feridas Crónicas (Thesis) Main arguer	Paula Teixeira (Master) Universidade do Porto Faculdade de Medicina, Portugal
2020/07/21	User Sentiment-analysis during Physical Rehabilitation (Thesis) Main arguer	Diogo Gonçalves (Master) Universidade do Porto Faculdade de Engenharia, Portugal
2020/07	Estimate the emotional state of a user in physical rehabilitation (Thesis) Main arguer	Diogo Ricardo Castro Gonçalves (Master) Universidade do Porto Faculdade de Engenharia, Portugal
2020/07	Pre-training autoencoder for lung cancer characterisation Supervisor	Francisco Carvalho Moreira da Silva (Master) Universidade do Porto Faculdade de Engenharia, Portugal
2020/07	Multiple instance learning for lung cancer characterization in computed tomography scans Supervisor	Julieta Pintado Jorge Frade (Master) Universidade do Porto Faculdade de Engenharia, Portugal
2020/06/02	Review on Image Quality Assessment techniques: Cervical Cancer Applications (Thesis) Main arguer	Tomé Albuquerque (Other) Universidade do Porto Faculdade de Engenharia, Portugal

Conference scientific committee

	Conference name	Conference host
2020/10 - 2020/10/31	26th Portuguese Conference on Pattern Recognition	University of Évora
2020/02 - 2020/06	ICIAR 2020: International Conference on Image Analysis and Recognition	Portugal
2019/08 - 2019/10/31	25th Portuguese Conference on Pattern Recognition	Portugal
2019/07 - 2019/08	International Conference on Biomedical Engineering and Biotechnology (ICBEB 2019)	Republic of Korea
2019/02 - 2019/03	IEEE-EMBS International Conference on Biomedical and Health Informatics (BHI)	USA
2016 - 2016	IEEE SENSORS 2016	USA
2015 - 2015	IEEE SENSORS 2015	South Korea
2011 - 2011	5th International Joint Conference on Biomedical Engineering Systems and Technologies (BIOSTEC 2012) Biosignals 2012	Portugal

Course / Discipline taught

	Academic session	Degree Subject (Type)	Institution / Organization
2021/01/29 - 2021/01/29	Artificial Intelligence - the Future	(Outros)	Sociedade Portuguesa de Pneumologia, Portugal

Evaluation committee

	Activity description Role	Institution / Organization	Funding entity
2020/08 - 2020/09	Part of the jury of a research grant - (AE2020-0130) Member	Instituto de Engenharia de Sistemas e Computadores Tecnologia e Ciência, Portugal	Fundação para a Ciência e a Tecnologia
2018 - 2018	Reviewer of applications on the "ATIP – Avenir Program – Edition 2018 Young group leader" funded by Institut national de la santé et de la recherche médicale (Inserm), France Evaluator	INSERM, France	INSERM
2016/09 - 2016/12	Evaluation of Scientific Proposal from Czech Health Research Council – established by the Ministry of Health of the Czech Republic Evaluator	Czech Health Research Council – Ministry of Health of the Czech Republic, Czech Republic	Czech Health Research Council – Ministry of Health of the Czech Republic

Interview (newspaper / magazine)

	Activity description	Newspaper / Forum
2019/04	Tânia troca Viseu pela Califórnia e afirma-se na investigação científica - Description of my scientific international experience	Diário de Viseu
2011	Presentation of the developed optical devices that led me to win the "Best Student Paper Award" with the work: Optical Methods For Local Pulse Wave Velocity Assessment in the International Conference on Bio-inspired Systems and Signal Processing – Biosignals 2011 in Rome, Italy. http://www.uc.pt/iii/novidades/2011/n20110208n01 http://www.rtp.pt/noticias/saude/aluna-da-universidade-de-coimbra-venceu-premio-internacional_v416349 https://www.mundoportugues.pt/58196/	UC + RTP +MundoPortugues

Journal scientific committee

	Journal title (ISSN)	Publisher
2021/02 - Current	Frontiers in Physiology	Clinical and Translational Physiology
2019 - Current	PLoS ONE (1932-6203)	Public Library of Science
2019 - Current	Scientific Reports (2045-2322)	Springer Science and Business Media LLC
2019 - Current	Psychoneuroendocrinology (0306-4530)	Elsevier
2019 - Current	IEEE Transactions on Biomedical Engineering (1558-2531)	Institute of Electrical and Electronics Engineers
2019 - Current	IEEE Reviews in Biomedical Engineering (1941-1189)	Institute of Electrical and Electronics Engineers
2019 - Current	Biochimica et Biophysica Acta (BBA) - General Subjects (0304-4165)	Elsevier
2019 - Current	Sensors (1424-8220)	MDPI AG
2018 - Current	Biomedical Physics & Engineering Express (2057-1976)	IOP Publishing
2016 - Current	Medicines (2305-6320)	MDPI AG
2016 - Current	Biomedical Research (1880-313X)	Biomedical Research Press
2016 - Current	Biomedical Signal Processing and Control (1746-8094)	Elsevier
2016 - Current	Medical Engineering & Physics (1350-4533)	Elsevier
2016 - Current	Mathews Journal of Surgery
2016 - Current	IEEE Journal of Biomedical and Health Informatics (2168-2208)	Institute of Electrical and Electronics Engineers
2016 - Current	Mathews Journal of Cardiology
2015 - Current	Journal of Translational Engineering in Health and Medicine
2015 - Current	International Journal of Computer Assisted Radiology and Surgery (1861-6429)	Springer-Verlag
2015 - Current	Journal of Diabetes Research (2314-6753)	Hindawi Limited
2015 - Current	Computational and Mathematical Methods in Medicine (1748-6718)	Hindawi Limited
2014 - Current	Journal of Intelligent Systems (2191-026X)	Walter de Gruyter GmbH
2014 - Current	International Journal of Cardiovascular Research (2324-8602)	OMICS Publishing Group
2014 - Current	Archives of Medical Research (0188-4409)	Elsevier
2014 - Current	Medical & Biological Engineering & Computing (1741-0444)	Springer-Verlag

Mentoring / Tutoring

	Topic	Student name
2020/11/01 - Current	The fusion of semantic and radiomic features for lung cancer characterization	Mafalda Oliveira
2020/07/01 - Current	A Deep Learning approach for lung cancer characterisation on multimodal data	Francisco Silva
2018/01 - 2020/12/31	Algorithms for cardiac events detection	Nate Tran

Other jury / evaluation

	Activity description	Institution / Organization
2020/02 - 2020/02	Evaluation of monography developed for MSc thesis / Student: Diogo Gonçalves / Title: User Sentiment-analysis during Physical Rehabilitation / Integrated Master in Biomedical Engineering (Master)	Universidade do Porto Faculdade de Engenharia, Portugal
2020/01/29 - 2020/01/29	Evaluation of monography developed for MSc thesis / Student: Bruno Alexandre Oliveira Dias / Title: Classification of 3D models of images from photographies for skin cancer screening / Integrated Master in Informatics andComputing Engineering (Master)	Universidade do Porto Faculdade de Engenharia, Portugal
2020/01/29 - 2020/01/29	Evaluation of monography developed for MSc thesis / Student: Julieta Frade / Title: Feature engineering for lung cancer gene mutation prediction / Integrated Master in Informatics and Computing Engineering (Master)	Universidade do Porto Faculdade de Engenharia, Portugal

Distinctions

Other distinction

2013	Short list of candidates to win the BIOSIGNALS 2013 best student paper award "Local PWV and other Hemodynamic Parameters Assessment: Validation of a New Optical Technique in an Healthy Population", T. Pereira, I. Santos, T. Oliveira, P. Vaz, T. Pereira, H
2013	Best Student Paper Award: “Bioimpedance Parameter as a Risk Factor to Assess Pine Decay - An Innovative Approach to the Diagnosis of Plant Diseases”, E. Borges, M. Sequeira, André F. V. Cortez, H. Catarina Pereira, T. Pereira, V. Almeida, T. M. Vasconcelo
2013	Best Student Paper Award: “Assessment of Physiological States of Plants in situ - An Innovative Approach to the use of Electrical Impedance Spectroscopy” E. Borges, M. Sequeira, André F. V. Cortez, H. Catarina Pereira, T. Pereira, V. Almeida, T. M. Vascon
2011	Best student paper award: “Optical Methods For Local Pulse Wave Velocity Assessment”, T. Pereira, M. Cabeleira, P. Matos, E. Borges, V. Almeida, J. Cardoso, C. Correia