Curriculum Vitae
Ramiro Emanuel Magno Morgado
Identification
Personal identification
- Full name
- Ramiro Emanuel Magno Morgado
Citation names
- Magno, Ramiro
Author identifiers
- Ciência ID
- 301D-EA6F-3663
- ORCID iD
- 0000-0001-5226-3441
- Google Scholar ID
- OAahJGgAAAAJ
Websites
- https://www.pattern.institute/team/rmagno (Professional)
- https://ramiromagno.r-universe.dev/builds (Professional)
Knowledge fields
- Exact Sciences - Computer and Information Sciences - Bioinformatics
- Natural sciences - Biological Sciences - Biology
- Social Sciences - Economics and Business - Business and Management
Languages
| Language | Speaking | Reading | Writing | Listening | Peer-review |
|---|---|---|---|---|---|
| Portuguese | Advanced (C1) | Advanced (C1) | Advanced (C1) | Advanced (C1) | |
| English | Advanced (C1) | Advanced (C1) | Advanced (C1) | Advanced (C1) |
Education
| Degree | Classification | |
|---|---|---|
|
2023 - 2023
Concluded
|
Making Data Science Work for Clinical Reporting (Postgraduate Certificate)
Coursera Inc, United States
|
|
|
2022 - 2022
Concluded
|
Data Science: Foundations using R Specialization (Postgraduate Certificate)
Johns Hopkins University, United States
|
|
|
2022
Ongoing
|
Masters in Healthcare Management (Mestrado integrado)
Universidade do Algarve, Portugal
|
|
|
2005 - 2006
Concluded
|
PhD Program in Computational Biology (Curso de doutoramento (conclusão de unidades curriculares))
Instituto Gulbenkian de Ciência, Portugal
|
|
|
2004
Concluded
|
Licenciatura em Biologia Vegetal Aplicada (Licenciatura)
Universidade de Lisboa Faculdade de Ciências, Portugal
"Geometry and dynamics of pollen tube growth" (THESIS/DISSERTATION)
|
15 |
Affiliation
Science
| Category Host institution |
Employer | |
|---|---|---|
| 2023/05 - Current | Researcher (Research) | Pattern Institute, Portugal |
| Pattern Institute, Portugal | ||
| 2014/08 - 2022/05 | Researcher (Research) | Universidade do Algarve, Portugal |
| Universidade do Algarve Centro de Investigação em Biomedicina, Portugal | ||
| 2010/02 - 2013/01 | Researcher (Research) | John Innes Centre, United Kingdom |
| John Innes Centre Department of Computational and Systems Biology, United Kingdom | ||
| 2008/11 - 2009/12 | Researcher (Research) | Universidade do Minho, Portugal |
| Universidade do Minho Instituto de Investigação em Ciências da Vida e Saúde, Portugal | ||
| 2006/09 - 2008/10 | Researcher (Research) | Universiteit Utrecht, Netherlands |
| Universiteit Utrecht Theoretical Biology and Bioinformatics, Netherlands | ||
| 2004/08 - 2005/08 | Researcher (Research) | Instituto Gulbenkian de Ciência, Portugal |
| Instituto Gulbenkian de Ciência, Portugal |
Positions / Appointments
| Category Host institution |
Employer | |
|---|---|---|
| 2024/05 - Current | R Developer | R Validation Hub, Switzerland |
| Pattern Institute, Portugal | ||
| 2023/05 - Current | Director | Pattern Institute, Portugal |
| Pattern Institute, Portugal | ||
| 2023/03 - Current | R Developer | Clinical Data Interchange Standards Consortium, United States |
| Pattern Institute, Portugal | ||
| 2024/01 - 2024/03 | Project Leader | Lodiag SAS, France |
| Lodiag SAS, France | ||
| 2023/09 - 2023/12 | Project Leader | Amoneta Diagnostics SAS, France |
| Amoneta Diagnostics SAS, France |
Projects
Grant
| Designation | Funders | |
|---|---|---|
| 2024/06 - 2025/06 | CaCau: Cancer Causality for Precision Oncology | Phase 2
2023.10973.CPCA.A2
Co-Principal Investigator (Co-PI)
Universidade do Algarve, Portugal
Pattern Institute, Portugal |
Fundacao de Computacao Cientifica Nacional
Ongoing
|
| 2024/01 - 2024/06 | CaCau: Cancer Causality | Phase 1
2023.09536.CPCA
Co-Principal Investigator (Co-PI)
Universidade do Algarve, Portugal
Pattern Institute, Portugal |
Associação para a Inovação e Desenvolvimento da FCT
Ongoing
|
| 2023/06 - 2023/12 | MitoProfiles: Gene Expression Landscape in Cancers from High Metabolic Rate Organs
Co-Principal Investigator (Co-PI)
Pattern Institute, Portugal
Universidade do Algarve, Portugal |
Ongoing
|
| 2019 - 2021 | DEvoCancer: Decoding breast cancer evolution through mutant allele differential expression signatures
PTDC/MED-ONC/31477/2017
Researcher
Universidade do Algarve Centro de Investigação em Biomedicina, Portugal
|
Fundação para a Ciência e a Tecnologia
Concluded
|
| 2013/06 - 2016/02 | Human Mesenchymal Stem Cells Chronobiology: evaluating the crosstalk between the Embryonic and Circadian Clocks
Researcher
|
Fundação para a Ciência e a Tecnologia
Concluded
|
| 2014 - 2015 | Timing cell differentiation: gene regulatory network in temporal control of mesoderm specification
Researcher
Universidade do Algarve Algarve Biomedical Center Research Institute, Portugal
|
Associação para a Inovação e Desenvolvimento da FCT
Concluded
|
| 2010/04 - 2013/07 | The role of molecular clock genes in temporal control of mesoderm patterning in vertebrate embryos
Researcher
|
Fundação para a Ciência e a Tecnologia
Concluded
|
Contract
| Designation | Funders | |
|---|---|---|
| 2023/02/20 - 2024/08/19 | Exploring the shared regulatory genetic basis in cancer risk
2022.02380.PTDC
Universidade do Algarve, Portugal
Universidad Complutense de Madrid, Spain |
Fundação para a Ciência e a Tecnologia
Ongoing
|
| 2010/02 - 2013/01 | Multi-level modelling of morphogenesis
PhD Student Fellow
John Innes Centre, United Kingdom
|
Biotechnology and Biological Sciences Research Council
Concluded
|
Outputs
Publications
| Conference abstract |
|
| Conference poster |
|
| Journal article |
|
| Online resource |
|
| Preprint |
|
Intellectual property
| Provisional application for patent |
|
Other
| Dataset |
|
| Other output |
|
| Software |
|
Activities
Oral presentation
| Presentation title | Event name Host (Event location) |
|
|---|---|---|
| 2011/10/12 | Concurrent sigmoidal curve fitting for reliable RT-qPCR absolute quantification | 2011 Annual Science Meeting
John Innes Centre and Sainsbury Laboratory (Norwich, United Kingdom)
|
Event organisation
| Event name Type of event (Role) |
Institution / Organization | |
|---|---|---|
| 2023/10/31 - 2023/11/03 | R-Mind: Unlocking the Potential of R Data Analysis for Biomolecular Research | 3-days international workshop | ESN-ISN Neurochemistry
School 2023 (2023/10/31 - 2023/11/03)
Workshop (Member of the Organising Committee)
|
Universidade do Algarve, Portugal |
| 2023/04/20 - 2023/04/25 | ENCODS 2023 Workshop | Publication ready graphs using R. (2023/05/02 - 2023/05/02)
Workshop (Member of the Organising Committee)
|
Universidade do Algarve Algarve Biomedical Center Research Institute, Portugal |
| 2022/10/26 - 2022/10/28 | Tidy data and visualisation with R. | In research, a significant amount of effort is spent cleaning data to get it ready for
visualisation and analysis. This course will teach you how to convert your messy dataset into tidy data using R for easy data
visual exploration and analysis. URL: https://www.ccmar.ualg.pt/advanced-tech-training/tidy-data-visualisation-r. (2022/10/26 - 2022/10/28)
Workshop (Member of the Scientific Committee)
|
Centro de Ciências do Mar, Portugal |
| 2019/05/27 - 2019/05/28 | Workshop | R for Absolute Beginners, 7th edition (2019/05/27 - 2019/05/28)
Workshop (Co-organisor)
|
Centro de Ciências do Mar, Portugal |
| 2018/06/04 - 2018/06/05 | Workshop | R for Absolute Beginners, 6th edition (2018/06/04 - 2018/06/05)
Workshop (Co-organisor)
|
Centro de Ciências do Mar, Portugal |
| 2017/06/05 - 2017/06/06 | Workshop | R for Absolute Beginners, 4th edition (2017/06/05 - 2017/06/06)
Workshop (Co-organisor)
|
Centro de Ciências do Mar, Portugal |
| 2017/05/29 - 2017/05/30 | Workshop | R for Absolute Beginners, 3rd edition (2017/05/29 - 2017/05/30)
Workshop (Co-organisor)
|
Centro de Ciências do Mar, Portugal |
Event participation
| Activity description Type of event |
Event name Institution / Organization |
|
|---|---|---|
| 2023/10/18 - 2023/10/18 | Hands-on workshop on how to perform machine learning using the R package `{tidymodels}` and friends.
Workshop
|
Introduction to Machine Learning with {tidymodels} / R in Pharma
R Consortium, United States
|
| 2023/10/18 - 2023/10/18 | Hands-on workshop on how to perform clinical trial design and simulations using the R package `{targets}` and friends.
Workshop
|
Leveraging {targets} and {crew} to simulate clinical trials / R in Pharma 2023
R Consortium, United States
|
| 2023/09/11 - 2023/09/15 | Open Research Hybrid Summer School 2023. The LMU Open Science Center organises this hybrid open research summer school to
allow early-career researchers to gain more trust in the research that they do, and make it as credible as it can be in the
eyes of their peers, the public, and funding agencies.
Workshop
|
LMU Open Science Center Summer School 2023
Ludwig-Maximilians-Universität München, Germany
|
| 2023/07/20 - 2023/07/20 | Webinar about algorithms and their use in driving metadata-driven automation
Seminar
|
Introduction to Algorithms - Introduction to Algorithms and their use in driving metadata-driven automation
Clinical Data Interchange Standards Consortium, United States
|
| 2023/07/13 - 2023/07/13 | Webinar about Conceptual & Operational Standards Metadata Services (COSMoS).
Seminar
|
CDISC Biomedical Concepts
Clinical Data Interchange Standards Consortium, United States
|
| 2023/07/11 - 2023/07/11 | Introduction to the CDISC Library Data Standards Browser (DSB) and CDISC Library API portal (API portal).
Seminar
|
CDISC Library Training
Clinical Data Interchange Standards Consortium, United States
|
| 2023/07/05 - 2023/07/07 | Ciência 2023 | Portuguese Science Summit. Science and ocean beyond the horizon.
Conference
|
Ciência 2023
Universidade de Aveiro, Portugal
|
| 2023/06/27 - 2023/06/27 | OAK Garden is part of the "next-generation" solution for Roche's data and analytics platforms to move towards increased automation.
The OAK Garden will be used by the Data Science teams to produce SDTM.
Seminar
|
OAK-SDTM Automation Project Kick-Off
Clinical Data Interchange Standards Consortium, United States
|
| 2021/02/26 - 2021/02/26 | hSNS Workshop 2021 | Portuguese public hospital performance assessment using a multi-criteria decision analysis framework.
A multi-perspective look at the healthcare sector. OR innovation applied to healthcare.
Workshop
|
hSNS Workshop 2021
Universidade de Lisboa Instituto Superior Técnico, Portugal
|
| 2021/02/03 - 2021/02/05 | Ensembl REST API Workshop | 3 day course taught by the EMBL-EBI training team
Workshop
|
Ensembl REST API Workshop
European Bioinformatics Institute, United Kingdom
|
| 2021/01/26 - 2021/01/28 | Ensembl Browser Workshop | 3 day course taught by the EMBL-EBI training team
Workshop
|
Ensembl Browser Workshop
European Bioinformatics Institute, United Kingdom
|
Ad Hoc journal article review
| Journal title (ISSN) | Publisher | |
|---|---|---|
| 2023/07 - Current | Frontiers in Cell and Developmental Biology (2296-634X) | Lausanne: Frontiers Media S.A. |
Association member
| Society Organization name | Role | |
|---|---|---|
| 2023/05 - Current | Pattern Institute | Director |
Consulting
| Activity description | Institution / Organization | |
|---|---|---|
| 2024/05 - Current | R package development in the context of https://github.com/pharmaR repositories. | Pattern Institute, Portugal |
| 2023/09 - Current | Bioinformatics Consulting | Pattern Institute, Portugal |
| 2023/04/18 - Current | Designing, developing, testing, and maintaining the R packages: {mint}, {oak}, and {raw.synthetic.data}, from the CDISC OAK-SDTM Automation project. | Clinical Data Interchange Standards Consortium, United States |
Distinctions
Award
| 2020 | Academic Merit Scholarship Award
Universidade do Algarve Faculdade de Economia, Portugal
|