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Célia P.F. Domingues is a PhD student at INIAV (National Institute for Agrarian and Veterinary Research) and cE3c (Centre for Ecology, Evolution and Environmental Change of the University of Lisbon & CHANGE - Institute for Global Change and Sustainability).
Identification

Personal identification

Full name
Célia Patrícia Ferreira Domingues Rebelo

Citation names

  • Domingues, C. P. F.
  • Célia P. F. Domingues
  • Domingues, Célia

Author identifiers

Ciência ID
3416-6299-1379
ORCID iD
0000-0003-2970-010X

Email addresses

  • celia.domingues@iniav.pt (Professional)

Addresses

  • Faculdade de Ciências da Universidade de Lisboa, Campo Grande, 1749-016, Lisboa, Lisboa, Portugal (Professional)

Websites

Knowledge fields

  • Natural sciences - Biological Sciences - Microbiology
  • Natural sciences - Biological Sciences - Molecular Biology
  • Exact Sciences - Computer and Information Sciences - Bioinformatics

Languages

Language Speaking Reading Writing Listening Peer-review
Portuguese (Mother tongue)
English Advanced (C1) Advanced (C1) Advanced (C1) Advanced (C1) Advanced (C1)
Education
Degree Classification
2022/03/01 - 2026/02/28
Ongoing
Biodiversity, Genetics and Evolution (Doutoramento)
Universidade de Lisboa Faculdade de Ciências, Portugal
2023/05/22 - 2023/05/26
Concluded
Climate Change Adaptation (Outros)
Universidade de Lisboa Centro de Ecologia Evolução e Alterações Ambientais, Portugal
2023/03/20 - 2023/03/24
Concluded
DNA Metabarcoding: how to design and analyse next-generation data for biodiversity monitoring (Outros)
Universidade do Porto Centro de Investigação em Biodiversidade e Recursos Genéticos, Portugal
2023/01/23 - 2023/01/27
Concluded
Production of Science Communication Activities (Outros)
Universidade de Lisboa Centro de Ecologia Evolução e Alterações Ambientais, Portugal
2022/11/07 - 2022/11/11
Concluded
Scientific Writing and Communication (Outros)
Universidade de Lisboa Centro de Ecologia Evolução e Alterações Ambientais, Portugal
2022/05/30 - 2022/06/03
Concluded
Experimental Design and Reproducibility in Science (Outros)
Universidade de Lisboa Centro de Ecologia Evolução e Alterações Ambientais, Portugal
2021/01/18 - 2021/03/20
Concluded
Analyzing Data with Python (Outros)
International Business Machines Corp, United States
2020/11/30 - 2020/12/21
Concluded
High-Dimensional Data Analysis (Outros)
Harvard University T H Chan School of Public Health, United States
2020/11/29 - 2020/12/18
Concluded
Statistical Inference and Modeling for High-throughput Experiments (Outros)
Harvard University T H Chan School of Public Health, United States
2020/10/06 - 2020/11/03
Concluded
Data Science: Inference and Modeling (Outros)
Harvard University T H Chan School of Public Health, United States
2017/09/05 - 2019/11/25
Concluded
Bioinformatics and Computational Biology (Mestrado)
Universidade de Lisboa Faculdade de Ciências, Portugal
"Virulence genes and antibiotic resistance genes in microbiomes of human populations – a network perspective" (THESIS/DISSERTATION)
2017/10/28 - 2017/10/29
Concluded
Introduction to the R Programming Language (Outros)
Universidade de Lisboa Faculdade de Ciências, Portugal
2013/09/25 - 2017/06/09
Concluded
Biology (Licenciatura)
Major in Molecular Biology and Genetics
Universidade de Lisboa Faculdade de Ciências, Portugal
Projects

Grant

Designation Funders
2022/03/01 - 2026/02/28 Evolutionary dynamics of bacterial genomes and metagenomes
UI/BD/153078/2022
PhD Student Fellow
Fundação para a Ciência e a Tecnologia
Ongoing

Other

Designation Funders
2022/06/01 - 2024/12/31 GenoPhenoTraits - Genomic and phenotypic traits contributing to persistence of Listeria monocytogenes in food processing environment
PTDC/BAA-AGR/4194/2021
Researcher
Universidade Católica Portuguesa Centro Regional do Porto, Portugal
Fundação para a Ciência e a Tecnologia
Concluded
2020/11/01 - 2022/02/28 CIAinVET: Food-producing animals as reservoirs of resistance to Critically Important Antibiotics
PTDC/CVT-CVT/28469/2017
Researcher
Instituto Nacional de Investigação Agrária e Veterinária, Portugal
Fundação para a Ciência e a Tecnologia
Concluded
Outputs

Publications

Conference poster
  1. Célia P. F. Domingues; João S. Rebelo; Dionisio, Francisco; Nogueira, Teresa. "Co-ocorrência de genes de resistência a antibióticos: localização em plasmídeos nos microorganismos patogénicos prioritários". Paper presented in Encontro Ciência 2024, 2024.
  2. Daniel G. Silva; Célia P. F. Domingues; João Figueiredo; Dionisio, Francisco; Ana Botelho; Nogueira, Teresa. "Potencial epidémico de aquaculturas portuguesas através de uma perspetiva Uma Só Saúde: análise metagenómica do resistoma". Paper presented in Encontro Ciência 2024, 2024.
  3. Daniel G. Silva; Célia P. F. Domingues; João Figueiredo; Francisco Dionisio; Ana Botelho; Nogueira, Teresa. "Metagenomic analysis of the resistome of Portuguese aquacultures and its epidemic potential". Paper presented in 2nd Microbiome PT Summit, 2023.
  4. Daniel G. Silva; Célia P. F. Domingues; João Figueiredo; Francisco Dionisio; Ana Botelho; Nogueira, Teresa. "Metagenomic study of bacterial resistance and its epidemic potential in estuarine aquaculture farms in Portugal". Paper presented in Dare2Change, 2023.
  5. Daniel G. Silva; Célia P. F. Domingues; João F. Figueiredo; Dionisio, Francisco; Ana Botelho; Nogueira, Teresa. "Microbiome and resistome dynamics of Portuguese estuarine aquacultures". Paper presented in XVIII National Meeting of Evolutionary Biology, 2022.
  6. Daniel G. Silva; Célia P. F. Domingues; Dionisio, Francisco; Ana Rosa Botelho; Nogueira, Teresa. "Estuarine Aquacultures at the Crossroads of Animal Production and Antibacterial Resistance A Metagenomic Approach to the Resistome". Paper presented in MicroSummit 2022, 2022.
  7. Daniel Silva; João Figueiredo; Célia P. F. Domingues; Francisco Dionisio; Ana Maulvault; Florbela Soares; Patricia Anacleto; Ana Botelho; Teresa Nogueira. "Antibiotic resistance determinants in estuarine aquacultures in Portugal". Paper presented in IC2AR 2022 - 5th International Caparica Conference in Antibiotic Resistance 2022, 2022.
  8. Silveira, H. D. ; Domingues, C. P. F.; Rebelo, J. S.; Amaro, A.; Dionísio, F.; Nogueira, T.. "Genomic dynamics of virulence and antibiotic resistance in bacterial genomes". Paper presented in 17th Annual Meeting of the Portuguese Association for Evolutionary Biology, 2021.
  9. Domingues, C. P. F.; Rebelo, J. S.; Nogueira, T.; Pothier, J.; Monteiro, F.; Dionisio, F.. "Why is there a positive correlation between the diversity of virulence and antibiotic-resistance genes?". Paper presented in RECOMB 2021 - 25th International Conference on Research in Computational Molecular Biology, 2021.
  10. Rebelo, J. S.; Domingues, C. P. F.; Monteiro, F.; Nogueira, T.; Dionisio, F.. "Plasmid transfer as a weapon against plasmid-free cells - a strategy that leads to plasmid maintenance". Paper presented in RECOMB 2021 - 25th International Conference on Research in Computational Molecular Biology, 2021.
  11. Rebelo, J. S.; Domingues, C. P. F.; Monteiro, F.; Nogueira, T.; Dionisio, F.. "Long life of persistent cells – faults and errors resulting in a power-law decay". Paper presented in Ciências Research Day, 2020.
  12. Rebelo, J. S.; Domingues, C. P. F.; Dionisio, F.; Botelho, A.; Nogueira, T.. "How the measures imposed due to COVID-19 influence the human microbiome?". Paper presented in Ciências Research Day, 2020.
  13. Domingues, C. P. F.; Rebelo, J. S.; Nogueira, T.; Pothier, J.; Monteiro, F.; Dionisio, F.. "Ratio between contagion probability and resistance genes loss rate is key for the emergence of a positive correlation between the diversity of virulence and antibiotic-resistance genes". Paper presented in Ciências Research Day, 2020.
  14. Domingues, C. P. F.; Rebelo, J. S.; Dionisio, F; Botelho, A.; Nogueira, T.. "The Distancing Imposed To Contain COVID-19 Can Affect Our Microbiome: a Double-Edged Sword in Human Health". Paper presented in 6th Annual Meeting 2020 Frontiers in E3, 2020.
  15. Domingues, C.P.F.; Rebelo, J.S.; Nogueira, T.; Pothier, J.; Dionísio, F.. "Correlation between virulence and antibiotic resistance: a study through computational simulations". Paper presented in VIII Jornadas de Investigação em Biologia, 2020.
  16. Rebelo, J.S.; Domingues, C.P.F.; Dionísio, F.. "Indirect resistance to ampicillin – a computational approach to understand the role of persistence". Paper presented in VIII Jornadas de Investigação em Biologia, 2020.
  17. Domingues, C.P.F.; Nogueira, T.; Dionísio, F.. "Virulence genes and antibiotic resistance genes in microbiomes of human populations – a network perspective". Paper presented in XV Encontro Nacional de Biologia Evolutiva, 2019.
Encyclopedia entry
  1. Dionisio, F; Célia P. F. Domingues; João S. Rebelo; Francisca Monteiro; Nogueira, Teresa. "The Role of Commensal and other Non-Pathogenic Bacteria". In Scholarly Community Encyclopedia, 2023. https://encyclopedia.pub/entry/40892.
Journal article
  1. Célia P. F. Domingues; João S. Rebelo; Francisco Dionisio; Teresa Nogueira. "Multi-Drug Resistance in Bacterial Genomes—A Comprehensive Bioinformatic Analysis". International Journal of Molecular Sciences (2023): https://doi.org/10.3390/ijms241411438.
    10.3390/ijms241411438
  2. João S. Rebelo; Célia P. F. Domingues; Teresa Nogueira; Francisco Dionisio. "Plasmids Increase the Competitive Ability of Plasmid-Bearing Cells Even When Transconjugants Are Poor Donors, as Shown by Computer Simulations". Microorganisms (2023): https://doi.org/10.3390/microorganisms11051238.
    10.3390/microorganisms11051238
  3. João S. Rebelo; Célia P. F. Domingues; Francisco Dionisio. "Plasmid Costs Explain Plasmid Maintenance, Irrespective of the Nature of Compensatory Mutations". Antibiotics (2023): https://doi.org/10.3390/antibiotics12050841.
    10.3390/antibiotics12050841
  4. Francisco Dionisio; Célia P. F. Domingues; João S. Rebelo; Francisca Monteiro; Teresa Nogueira. "The Impact of Non-Pathogenic Bacteria on the Spread of Virulence and Resistance Genes". International Journal of Molecular Sciences 24 3 (2023): 1967. http://dx.doi.org/10.3390/ijms24031967.
    Published • 10.3390/ijms24031967
  5. Daniel Silva; Célia P. F. Domingues; João F. Figueiredo; F Dionisio; Ana Botelho; Nogueira, Teresa. "Estuarine Aquacultures at the Crossroads of Animal Production and Antibacterial Resistance: A Metagenomic Approach to the Resistome". Biology (2022): https://www.mdpi.com/2079-7737/11/11/1681.
    10.3390/biology11111681
  6. Helena Darmancier; Célia P. F. Domingues; João S. Rebelo; Ana Amaro; Francisco Dionísio; Joël Pothier; Octávio Serra; Teresa Nogueira. "Are Virulence and Antibiotic Resistance Genes Linked? A Comprehensive Analysis of Bacterial Chromosomes and Plasmids". Antibiotics 11 6 (2022): 706-706. https://doi.org/10.3390/antibiotics11060706.
    Open access • Published • 10.3390/antibiotics11060706
  7. Célia P. F. Domingues; João S. Rebelo; Francisca Monteiro; Teresa Nogueira; Francisco Dionisio. "Harmful behaviour through plasmid transfer: a successful evolutionary strategy of bacteria harbouring conjugative plasmids". Philosophical Transactions of the Royal Society B: Biological Sciences (2022): https://doi.org/10.1098/rstb.2020.0473.
    Published • 10.1098/rstb.2020.0473
  8. João S. Rebelo; Célia P. F. Domingues; Francisca Monteiro; Teresa Nogueira; Francisco Dionisio. "Bacterial persistence is essential for susceptible cell survival in indirect resistance, mainly for lower cell densities". PLOS ONE (2021): https://doi.org/10.1371/journal.pone.0246500.
    Open access • Published • 10.1371/journal.pone.0246500
  9. João S. Rebelo; Célia P. F. Domingues; Francisco Dionisio; Manuel C. Gomes; Ana Botelho; Teresa Nogueira. "COVID-19 Lockdowns May Reduce Resistance Genes Diversity in the Human Microbiome and the Need for Antibiotics". International Journal of Molecular Sciences (2021): https://doi.org/10.3390/ijms22136891.
    Open access • Published • 10.3390/ijms22136891
  10. Célia P. F. Domingues; João S. Rebelo; Joël Pothier; Francisca Monteiro; Teresa Nogueira; Francisco Dionisio. "The Perfect Condition for the Rising of Superbugs: Person-to-Person Contact and Antibiotic Use Are the Key Factors Responsible for the Positive Correlation between Antibiotic Resistance Gene Diversity and Virulence Gene Diversity in Human Metagenomes". Antibiotics 10 5 (2021): 605. https://doi.org/10.3390/antibiotics10050605.
    Open access • Published • 10.3390/antibiotics10050605
  11. Domingues, C. P. F.; Rebelo, J. S.; Dionisio, F.; Botelho, A.; Nogueira, T.. "The Social Distancing Imposed To Contain COVID-19 Can Affect Our Microbiome: a Double-Edged Sword in Human Health". mSphere 5 5 (2020): http://dx.doi.org/10.1128/msphere.00716-20.
    Open access • Published • 10.1128/msphere.00716-20
Thesis / Dissertation
  1. Domingues, Célia. "Virulence genes and antibiotic resistance genes in microbiomes of human populations – a network perspective". Master, Universidade de Lisboa Faculdade de Ciências, 2019.
Activities

Oral presentation

Presentation title Event name
Host (Event location)
2024/10/24 Genomic dynamics and evolution of antibiotic resistance in microbial ecosystems Evolving Microbes and Global Health
Gulbenkian Institute for Molecular Medicine
2024/10/24 Conjugative plasmids as biological weapons of donor bacterial cells Evolving Microbes and Global Health
Gulbenkian Institute for Molecular Medicine,
2022/12/16 Long-term plasmid maintenance - plasmids used as weapons in bacterial competition XVIII National Meeting of Evolutionary Biology
Universidade do Minho
2022/09/08 The ecology of indirect resistance to antibiotics 5th International Caparica Conference in Antibiotic Resistance 2022
NOVA School of Science and Technology
2022/09/05 Genomic dynamics and evolution of antibiotic resistance and bacterial virulence 5th International Caparica Conference in Antibiotic Resistance 2022
NOVA School of Science and Technology
2022/06/27 Unrevealing plasmids through (meta)genomics SciMonday
INIAV
2022/01/13 The plasmid paradox demands a paradoxical solution Encontros Scientia cE3c
2021/10/21 Implications of human interactions on our metagenomes Seminários em Bioinformática e Biologia Computacional
Faculdade de Ciências da Universidade de Lisboa
2021/10/03 Impact of COVID-19 measures on resistance genes diversity in the human microbiome and antibiotic administration Frontiers in E3 - 7th Annual Meeting
Centre for Ecology, Evolution and Environmental Changes - cE3c (Portugal)
2021/10/01 Are you sure you know why certain plasmids have the ability to transfer between bacteria? Frontiers in E3 - 7th Annual Meeting
Centre for Ecology, Evolution and Environmental Changes - cE3c (Portugal)
2021/05/13 Are bacterial pathogenicity and antibiotic resistance linked? VI Ciclo de Conferências em Biotecnologia
Universidade da Beira Interior (Portugal)
2021/05/12 The dark side of conjugative plasmids Encontros Scientia cE3c
2021/02/02 Human connections drive the evolution of metagenomes with virulence and antibiotic-resistance genes Alphy 2021
(France)
2020/12/16 Human microbiome evolution and antibiotic resistance in pandemic times XVI Encontro Nacional de Biologia Evolutiva
Universidade de Aveiro (Aveiro, Portugal)
2020/12/16 Bacterial persistance: an evolutionary mechanism or a set of error in lucky bacteria? XVI Encontro Nacional de Biologia Evolutiva
Universidade de Aveiro (Aveiro, Portugal)
2020/12/16 Human social interactions shape the distribution of pathogenicity and antibiotic resistance genes (Awarded as Best Short Talk) XVI Encontro Nacional de Biologia Evolutiva
Universidade de Aveiro (Aveiro, Portugal)
2020/11/19 Antibiotics and social interactions shape human metagenomes Genómica Estrutural e Evolutiva
Instituto Politécnico de Setúbal - Escola Superior de Tecnologia do Barreiro
2020/10/19 Human metagenomes: from antibiotics to its consequences Seminários em Bioinformática e Biologia Computacional
Faculdade de Ciências da Universidade de Lisboa
2020/10/01 Understanding the correlation between virulence and antibiotic resistance genes in human metagenomes through computational simulations 6th Annual Meeting 2020 Frontiers in E3
2020/10/01 The advantage of dying slowly - the impact of persistence in indirect resistance 6th Annual Meeting 2020 Frontiers in E3
2019/10/24 Pathogenic and antibiotic resistance genes - How are they correlated? Seminários em Bioinformática e Biologia Computacional
Universidade de Lisboa - Faculdade de Ciências

Supervision

Thesis Title
Role
Degree Subject (Type)
Institution / Organization
2021/02/08 - 2021/05/07 Computational approach on the dynamics of growth and conjugation in bacteria
Co-supervisor
Estudo Orientado em Biologia Molecular e Genética (Scientific initiation)
Universidade de Lisboa Faculdade de Ciências, Portugal
2021/02/08 - 2021/05/07 Estimation of the number of transconjugants using computer simulations
Co-supervisor
Estudo Orientado em Biologia Molecular e Genética (Scientific initiation)
Universidade de Lisboa Faculdade de Ciências, Portugal
2021/02/08 - 2021/05/07 Simulation of plasmid transfer on solid surfaces
Co-supervisor
Estudo Orientado em Biologia Molecular e Genética (Scientific initiation)
Universidade de Lisboa Faculdade de Ciências, Portugal

Event organisation

Event name
Type of event (Role)
Institution / Organization
2018/07/23 - 2018/07/27 Volunteer at the organizing committee of the 11th European Conference on Mathematical and Theoretical Biology (2018/07/23 - 2018/07/27)
Congress (Member of the Organising Committee)
Universidade de Lisboa Faculdade de Ciências, Portugal
2018/03/14 - 2018/03/16 7th Bioinformatic Open Days (2018/03/14 - 2018/03/16)
Congress (Member of the Organising Committee)
Universidade do Minho, Portugal

Event participation

Activity description
Type of event
Event name
Institution / Organization
2024/03/27 - 2024/03/27 Deciphering the Microbiome: Research and Applications in Early Human Development
Symposium
Applied Microbiology International, United Kingdom
2023/10/26 - 2023/10/27 2nd Microbiome PT Summit
Conference
Universidade de Lisboa Faculdade de Medicina, Portugal
2023/07/03 - 2023/07/10 Clinical and Environmental Metagenome Analysis
Workshop
Rice Global Paris Center (Paris)
Rice University, United States
2022/12/15 - 2022/12/16 XVIII National Meeting of Evolutionary Biology
Meeting
XVIII ENBE
Universidade do Minho, Portugal
2021/10/27 - 2021/10/27 One Health EJP Dissemination Workshop on Metagenomics
Workshop
2021/08/29 - 2021/09/01 25th International Conference on Research in Computational Molecular Biology
Conference
RECOMB 2021
Università degli Studi di Padova, Italy
2021/02/04 - 2021/02/04 1st Microbiome PT Summit
Meeting
BioData.pt, Portugal
2021/01/26 - 2021/01/27 Inhomogeneous random networks
Conference
Institut Curie, France

Institut Henri Poincaré, France
2020/11/18 - 2020/11/18 3rd Workshop on Human BioMonitoring in Portugal
Workshop
2020/06/22 - 2020/06/25 24th International Conference on Research in Computational Molecular Biology
Conference
RECOMB 2020
Università degli Studi di Padova, Italy
2018/03/14 - 2018/03/14 Understanding Microbial Dynamics and Interventions with Mathematical Models
Workshop
Universidade do Minho, Portugal
2017/10/26 - 2017/11/09 Persuasion and Influencing Course
Other
Speak and Lead
Universidade de Lisboa Faculdade de Ciências, Portugal
2014/02/24 - 2014/03/06 II Jornadas de Investigação em Biologia
Meeting
Universidade de Lisboa Faculdade de Ciências, Portugal

Course / Discipline taught

Academic session Degree Subject (Type) Institution / Organization
2021/04/08 - 2021/04/09 Fundamentals of R, statistical analysis and data treatment course given to students of the Master in Applied Microbiology (7h duration) Universidade de Lisboa Faculdade de Ciências, Portugal
Distinctions

Award

2020 Best Short Talk (Human social interactions shape the distribution of pathogenicity and antibiotic resistance genes) - XVI Portuguese Meeting of Evolutionary Biology
Universidade de Aveiro, Portugal

Other distinction

2020 Most read paper September 2020 - mSphere
American Society for Microbiology, United States
2020 Top most read paper October-December 2020 - mSphere
American Society for Microbiology, United States