???global.info.a_carregar???
I received a Ph.D. in Molecular Biology with a focus on Molecular Evolution from the University of Wyoming in 2014, focusing on gene duplication and protein family evolution. This work combined theoretical and population genetic work with more traditional phylogenetic approaches to better understand how gene duplication contributes to the functional evolution of the genome and differing protein homolog complements between taxa. Upon completion of my Ph.D., I joined the research group of Vaishali Katju (Texas A&M University) as a bioinformatic postdoc, studying the accumulation and transcriptional consequences of large and small mutations within the Caenorhabditis elegans nuclear and mitochondrial genomes over 400 generations of laboratory evolution. More recently, I spent the past year working in the group of Isabel Gordo (Instituto Gulbenkian de Ciência), performing the computational work required for the analysis of the evolutionary dynamics of Escherichia coli populations adapting to the intestinal environment of mice. More recently I moved to the research group of Dr. Ivo Chelo (Eco-Evolutionary Genetics), where I will be studying the effects of microbiome community assembly on deleterious genotypes of the host. I received the Stimulus of Scientific Employment Fellowship at the Junior Researcher Level for this, which will allow me to develop an independent research trajectory for future career development while working in Dr. Chelo's group.
Identification

Personal identification

Full name
Anke Konrad

Citation names

  • Konrad, Anke

Author identifiers

Ciência ID
3515-8205-621A
ORCID iD
0000-0003-3994-460X

Email addresses

  • akonrad@fc.ul.pt (Professional)

Telephones

Mobile phone
  • (+351) 966305499 (Personal)

Addresses

  • CE3C - Centre for Ecology, Evolution and Environmental Changes; Faculdade de Ciências da Universidade de Lisboa (FCUL) , 1749-016, Lisboa, Lisboa, Portugal (Professional)

Websites

Knowledge fields

  • Exact Sciences - Computer and Information Sciences - Bioinformatics
  • Exact Sciences - Computer and Information Sciences - Bioinformatics
  • Exact Sciences - Computer and Information Sciences - Bioinformatics
  • Natural sciences - Biological Sciences - Evolutionary Biology
  • Natural sciences - Biological Sciences - Ecology
  • Natural sciences - Biological Sciences - Evolutionary Biology

Languages

Language Speaking Reading Writing Listening Peer-review
German (Mother tongue)
English Proficiency (C2) Proficiency (C2) Proficiency (C2) Proficiency (C2) Proficiency (C2)
French Beginner (A1) Beginner (A1) Beginner (A1) Beginner (A1) Beginner (A1)
Portuguese Elementary (A2) Elementary (A2) Elementary (A2) Beginner (A1) Beginner (A1)
Education
Degree Classification
2009/08/15 - 2014/05/10
Concluded
Molecular Biology (Doktor (PhD))
Major in Molecular Biology (Molecular Evolution)
University of Wyoming, United States
"Evolution of Gene Families via Gene Duplication with specific Examples in the Nucleoside Salvage Pathway" (THESIS/DISSERTATION)
2006/01/15 - 2009/12/15
Concluded
Biology (Master)
Major in Ecology and Evolutionary Biology
New Mexico State University, United States
"Habitat prediction of Aquilegia chrysantha: a comparison of generalized linear and generalized additive models using a unique dataset of a rare species" (THESIS/DISSERTATION)
2001/08/15 - 2005/12/15
Concluded
Biology (Bachelor (1st cycle))
Major in Biology; Minor: Chemistry
New Mexico State University, United States
Outputs

Publications

Journal article
  1. Katju, Vaishali; Konrad, Anke; Deiss, Thaddeus; Bergthorssson, Ulfar. "Mutation rate and spectrum in Caenorhabditis elegans mutation accumulation lines subjected to RNAi-induced knockdown of the mismatch repair gene msh-2". G3 Genes|Genomes|Genetics 12 1 (2021): jkab364. https://doi.org/10.1093/g3journal/jkab364.
    Open access • Published
  2. Hugo C. Barreto; Nelson Frazão; Ana Sousa; Anke Konrad; Isabel Gordo. "Mutation accumulation and horizontal gene transfer in Escherichia coli colonizing the gut of old mice". Communicative & Integrative Biology 13 1 (2020): 89-96. https://doi.org/10.1080/19420889.2020.1783059.
    10.1080/19420889.2020.1783059
  3. Bergthorsson, U.; Sheeba, C.J.; Konrad, A.; Belicard, T.; Beltran, T.; Katju, V.; Sarkies, P.. "Long-term experimental evolution reveals purifying selection on piRNA-mediated control of transposable element expression". BMC Biology 18 1 (2020): http://www.scopus.com/inward/record.url?eid=2-s2.0-85095417056&partnerID=MN8TOARS.
    10.1186/s12915-020-00897-y
  4. Anke Konrad; Meghan J. Brady; Ulfar Bergthorsson; Vaishali Katju. "Mutational Landscape of Spontaneous Base Substitutions and Small Indels in Experimental Caenorhabditis elegans Populations of Differing Size". Genetics (2019): https://doi.org/10.1534/genetics.119.302054.
    10.1534/genetics.119.302054
  5. Konrad A; Flibotte S; Taylor J; Waterston RH; Moerman DG; Bergthorsson U; Katju V. "Mutational and transcriptional landscape of spontaneous gene duplications and deletions in Caenorhabditis elegans.". Proceedings of the National Academy of Sciences of the United States of America (2018): http://europepmc.org/abstract/med/29941601.
    10.1073/pnas.1801930115
  6. Konrad A; Thompson O; Waterston RH; Moerman DG; Keightley PD; Bergthorsson U; Katju V. "Mitochondrial Mutation Rate, Spectrum and Heteroplasmy in Caenorhabditis elegans Spontaneous Mutation Accumulation Lines of Differing Population Size.". Molecular biology and evolution (2017): http://europepmc.org/abstract/med/28087770.
    10.1093/molbev/msx051
  7. Konrad, Anke; Lai, Jason; Mutahir, Zeeshan; Piškur, Jure; Liberles, David A.. "The Phylogenetic Distribution and Evolution of Enzymes Within the Thymidine Kinase 2-like Gene Family in Metazoa". Journal of Molecular Evolution 78 3-4 (2014): 202-216. http://dx.doi.org/10.1007/s00239-014-9611-6.
    Published • 10.1007/s00239-014-9611-6
  8. Konrad, Anke; Piškur, Jure; Liberles, David A.. "The evolution of catalytic residues and enzyme mechanism within the bacterial nucleoside phosphorylase superfamily 1". Gene 510 2 (2012): 154-161. http://dx.doi.org/10.1016/j.gene.2012.08.046.
    10.1016/j.gene.2012.08.046
  9. Tinta, Tinkara; Christiansen, Louise Slot; Konrad, Anke; Liberles, David A.; Turk, Valentina; Munch-Petersen, Birgitte; Piškur, Jure; Clausen, Anders R.. "Deoxyribonucleoside kinases in two aquatic bacteria with high specificity for thymidine and deoxyadenosine". FEMS Microbiology Letters 331 2 (2012): 120-127. http://dx.doi.org/10.1111/j.1574-6968.2012.02565.x.
    10.1111/j.1574-6968.2012.02565.x
  10. Konrad, Anke; Yarunova, Ekaterina; Tinta, Tinkara; Piškur, Jure; Liberles, David A.. "The global distribution and evolution of deoxyribonucleoside kinases in bacteria". Gene 492 1 (2012): 117-120. http://dx.doi.org/10.1016/j.gene.2011.10.039.
    10.1016/j.gene.2011.10.039
  11. Konrad, Anke; Teufel, Ashley I.; Grahnen, Johan A.; Liberles, David A.. "Toward a General Model for the Evolutionary Dynamics of Gene Duplicates". Genome Biology and Evolution 3 (2011): 1197-1209. http://dx.doi.org/10.1093/gbe/evr093.
    Published • 10.1093/gbe/evr093
  12. Denoeud, F.; Henriet, S.; Mungpakdee, S.; Aury, J.-M.; Da Silva, C.; Brinkmann, H.; Mikhaleva, J.; et al. "Plasticity of Animal Genome Architecture Unmasked by Rapid Evolution of a Pelagic Tunicate". Science 330 6009 (2010): 1381-1385. http://dx.doi.org/10.1126/science.1194167.
    10.1126/science.1194167
Thesis / Dissertation
  1. Konrad, Anke. "Evolution of Gene Families via Gene Duplication with specific Examples in the Nucleoside Salvage Pathway". PhD, University of Wyoming, 2014.
  2. Konrad, Anke. "Habitat prediction of Aquilegia chrysantha: a comparison of generalized linear and generalized additive models using a unique dataset of a rare species". Master, New Mexico State University, 2009.
Working paper
  1. Deiss, Thaddeus; Konrad, Anke; Bergthorsson, Ulfar; Katju, Vaishali. 2022. "Global Gene Expression Divergence in Spontaneous Mutation Accumulation Lines of Caenorhabditis elegans under Varying Efficiency of Selection". https://doi.org/10.1101/2021.05.03.442498.
  2. Frazão, Nelson; Konrad, Anke; Daniela Güleresi; Michael Lässig; Gordo, Isabel. 2022. "Two modes of co-evolution shape strain diversity in the gut for thousands of generations". https://doi.org/10.1101/2022.01.11.475860.