| Journal article |
- Michelle R. Scribner; Amelia C. Stephens; Justin L. Huong; Anthony R. Richardson; Vaughn S. Cooper. "The nutritional environment
is sufficient to select coexisting biofilm and quorum-sensing mutants of Pseudomonas aeruginosa". Journal of Bacteriology
(2022): https://doi.org/10.1128/JB.00444-21.
10.1128/JB.00444-21
- Katrina B Harris; Kenneth M Flynn; Vaughn S Cooper; Deepa Agashe. "Polygenic Adaptation and Clonal Interference Enable Sustained
Diversity in Experimental Pseudomonas aeruginosa Populations". Molecular Biology and Evolution (2021): https://doi.org/10.1093/molbev/msab248.
10.1093/molbev/msab248
- Collin Kessler; Eisha Mhatre; Vaughn Cooper; Wook Kim; Irina S. Druzhinina. "Evolutionary Divergence of the Wsp Signal Transduction
Systems in Beta- and Gammaproteobacteria". Applied and Environmental Microbiology 87 22 (2021): https://doi.org/10.1128/AEM.01306-21.
10.1128/AEM.01306-21
- Anita Rana; David Patton; Nathan T Turner; Marcus M Dillon; Vaughn S Cooper; Way Sung; P J Wittkopp. "Precise measurement
of the fitness effects of spontaneous mutations by droplet digital PCR in Burkholderia cenocepacia". Genetics 219 2
(2021): https://doi.org/10.1093/genetics/iyab117.
10.1093/genetics/iyab117
- Matthew M. Schaefers; Benjamin X. Wang; Nicole M. Boisvert; Sarah J. Martini; Sarah L. Bonney; Christopher W. Marshall; Michael
T. Laub; et al. "Evolution towards Virulence in a Burkholderia Two-Component System". mBio 12 4 (2021): https://doi.org/10.1128/mBio.01823-21.
10.1128/mBio.01823-21
- Alfonso Santos-Lopez; Christopher W Marshall; Allison L Haas; Caroline Turner; Javier Rasero; Vaughn S Cooper. "The roles
of history, chance, and natural selection in the evolution of antibiotic resistance". eLife 10 (2021): https://doi.org/10.7554/eLife.70676.
10.7554/eLife.70676
- Salini Konikkat; Ivan Matic; Michelle R. Scribner; Rory Eutsey; N. Luisa Hiller; Vaughn S. Cooper; Joel McManus. "Quantitative
mapping of mRNA 3’ ends in Pseudomonas aeruginosa reveals a pervasive role for premature 3’ end formation in response to azithromycin".
PLOS Genetics 17 7 (2021): e1009634-e1009634. https://doi.org/10.1371/journal.pgen.1009634.
10.1371/journal.pgen.1009634
- Eric L. Bruger; Daniel J. Snyder; Vaughn S. Cooper; Christopher M. Waters. "Correction: Quorum sensing provides a molecular
mechanism for evolution to tune and maintain investment in cooperation". The ISME Journal (2021): https://doi.org/10.1038/s41396-021-00972-4.
10.1038/s41396-021-00972-4
- Christopher W. Marshall; Erin S. Gloag; Christina Lim; Daniel J. Wozniak; Vaughn S. Cooper. "Rampant prophage movement among
transient competitors drives rapid adaptation during infection". Science Advances (2021): https://doi.org/10.1126/sciadv.abh1489.
10.1126/sciadv.abh1489
- Abigail M. Rubio; Ellen G. Kline; Chelsea E. Jones; Liang Chen; Barry N. Kreiswirth; M. Hong Nguyen; Cornelius J. Clancy;
et al. "In Vitro Susceptibility of Multidrug-Resistant Pseudomonas aeruginosa following Treatment-Emergent Resistance to Ceftolozane-Tazobactam".
Antimicrobial Agents and Chemotherapy 65 6 (2021): https://doi.org/10.1128/AAC.00084-21.
10.1128/AAC.00084-21
- Heiko T. Kiesewalter; Carlos N. Lozano-Andrade; Mario Wibowo; Mikael L. Strube; Gergely Maróti; Dan Snyder; Tue Sparholt Jørgensen;
et al. "Genomic and Chemical Diversity of Bacillus subtilis Secondary Metabolites against Plant Pathogenic Fungi". mSystems
(2021): https://doi.org/10.1128/mSystems.00770-20.
10.1128/mSystems.00770-20
- Eric L. Bruger; Daniel J. Synder; Vaughn S. Cooper; Christopher M. Waters. "Quorum sensing provides a molecular mechanism
for evolution to tune and maintain investment in cooperation". The ISME Journal (2020): https://doi.org/10.1038/s41396-020-00847-0.
10.1038/s41396-020-00847-0
- Eisha Mhatre; Daniel J. Snyder; Emily Sileo; Caroline B. Turner; Sean W. Buskirk; Nicolas L. Fernandez; Matthew B. Neiditch;
Christopher M. Waters; Vaughn S. Cooper. "One gene, multiple ecological strategies: A biofilm regulator is a capacitor for
sustainable diversity". Proceedings of the National Academy of Sciences 117 35 (2020): 21647-21657. https://doi.org/10.1073/pnas.2008540117.
10.1073/pnas.2008540117
- Michelle R. Scribner; Alfonso Santos-Lopez; Christopher W. Marshall; Christopher Deitrick; Vaughn S. Cooper; Deborah A. Hogan.
"Parallel Evolution of Tobramycin Resistance across Species and Environments". mBio (2020): https://doi.org/10.1128/mBio.00932-20.
10.1128/mBio.00932-20
- Vaughn S. Cooper; Erin Honsa; Hannah Rowe; Christopher Deitrick; Amy R. Iverson; Jonathan J. Whittall; Stephanie L. Neville;
et al. "Experimental Evolution In Vivo To Identify Selective Pressures during Pneumococcal Colonization". mSystems
(2020): https://doi.org/10.1128/mSystems.00352-20.
10.1128/mSystems.00352-20
- Daniel R Evans; Marissa P Griffith; Alexander J Sundermann; Kathleen A Shutt; Melissa I Saul; Mustapha M Mustapha; Jane W
Marsh; et al. "Systematic detection of horizontal gene transfer across genera among multidrug-resistant bacteria in a single
hospital". eLife (2020): https://doi.org/10.7554/eLife.53886.
10.7554/eLife.53886
- Heiko T. Kiesewalter; Carlos N. Lozano-Andrade; Gergely Maróti; Dan Snyder; Vaughn S. Cooper; Tue Sparholt Jørgensen; Tilmann
Weber; Ákos T. Kovács; Irene L. G. Newton. "Complete Genome Sequences of 13 Bacillus subtilis Soil Isolates for Studying Secondary
Metabolite Diversity". Microbiology Resource Announcements 9 2 (2020): https://doi.org/10.1128/MRA.01406-19.
10.1128/MRA.01406-19
- Caroline B. Turner; Sean W. Buskirk; Katrina B. Harris; Vaughn S. Cooper. "Negative frequency-dependent selection maintains
coexisting genotypes during fluctuating selection". Molecular Ecology (2020): https://doi.org/10.1111/mec.15307.
10.1111/mec.15307
- Andrew B Morgenthaler; Wallis R Kinney; Christopher C Ebmeier; Corinne M Walsh; Daniel J Snyder; Vaughn S Cooper; William
M Old; Shelley D Copley. "Mutations that improve efficiency of a weak-link enzyme are rare compared to adaptive mutations
elsewhere in the genome". eLife 8 (2019): https://doi.org/10.7554/eLife.53535.
10.7554/eLife.53535
- Ravi K. Patel; Chunhua Song; Mark C. Weir; Kexin Shen; Daniel Snyder; Vaughn S. Cooper; Thomas E. Smithgall. "Expression of
myeloid Src-family kinases is associated with poor prognosis in AML and influences Flt3-ITD kinase inhibitor acquired resistance".
PLOS ONE (2019): https://doi.org/10.1371/journal.pone.0225887.
10.1371/journal.pone.0225887
- Vaughn S. Cooper; Taylor M. Warren; Abigail M. Matela; Michael Handwork; Shani Scarponi. "EvolvingSTEM: a microbial evolution-in-action
curriculum that enhances learning of evolutionary biology and biotechnology". Evolution: Education and Outreach 12
1 (2019): https://doi.org/10.1186/s12052-019-0103-4.
10.1186/s12052-019-0103-4
- Juhan Kim; Jake J. Flood; Michael R. Kristofich; Cyrus Gidfar; Andrew B. Morgenthaler; Tobias Fuhrer; Uwe Sauer; et al. "Hidden
resources in the Escherichia coli genome restore PLP synthesis and robust growth after deletion of the essential gene pdxB".
Proceedings of the National Academy of Sciences 116 48 (2019): 24164-24173. https://doi.org/10.1073/pnas.1915569116.
10.1073/pnas.1915569116
- Meghan A. Hartwick; Erin A. Urquhart; Cheryl A. Whistler; Vaughn S. Cooper; Elena N. Naumova; Stephen H. Jones. "Forecasting
Seasonal Vibrio parahaemolyticus Concentrations in New England Shellfish". International Journal of Environmental Research
and Public Health (2019): https://doi.org/10.3390/ijerph16224341.
10.3390/ijerph16224341
- Alina Iovleva; Roberta T. Mettus; Christi L. McElheny; Marissa P. Griffith; Mustapha M. Mustapha; A. William Pasculle; Ryan
K. Shields; Vaughn S. Cooper; Yohei Doi. "High-Level Carbapenem Resistance in OXA-232-Producing Raoultella ornithinolytica
Triggered by Ertapenem Therapy". Antimicrobial Agents and Chemotherapy (2019): https://doi.org/10.1128/AAC.01335-19.
10.1128/AAC.01335-19
- Alfonso Santos-Lopez; Christopher W Marshall; Michelle R Scribner; Daniel J Snyder; Vaughn S Cooper. "Evolutionary pathways
to antibiotic resistance are dependent upon environmental structure and bacterial lifestyle". eLife 8 (2019): https://doi.org/10.7554/eLife.47612.
10.7554/eLife.47612
- Erin S. Gloag; Christopher W. Marshall; Daniel Snyder; Gina R. Lewin; Jacob S. Harris; Alfonso Santos-Lopez; Sarah B. Chaney;
et al. "Pseudomonas aeruginosa Interstrain Dynamics and Selection of Hyperbiofilm Mutants during a Chronic Infection". mBio
10 4 (2019): https://doi.org/10.1128/mBio.01698-19.
10.1128/mBio.01698-19
- Evan J. Waldron; Robert B. Bourret; Daniel Snyder; Nicolas L. Fernandez; Emily Sileo; Daigo Inoyama; Joel S. Freundlich; et
al. "Structural basis of DSF recognition by its receptor RpfR and its regulatory interaction with the DSF synthase RpfF".
PLOS Biology (2019): https://doi.org/10.1371/journal.pbio.3000123.
10.1371/journal.pbio.3000123
- Marsh JW; Pacey MP; Ezeonwuka C; Ohm SL; Snyder D; Cooper VS; Harrison LH; Doi Y; Mustapha MM. "Clostridioides difficile:
a potential source of NpmA in the clinical environment.". The Journal of antimicrobial chemotherapy (2019): http://europepmc.org/abstract/med/30295814.
10.1093/jac/dky420
- Torres A; Kasturiarachi N; DuPont M; Cooper VS; Bomberger J; Zemke A. "NADH Dehydrogenases in Pseudomonas aeruginosa Growth
and Virulence.". Frontiers in Microbiology (2019): http://europepmc.org/abstract/med/30804898.
10.3389/fmicb.2019.00075
- Dunlap DG; Marshall CW; Fitch A; Rapport SF; Cooper VS; McVerry BJ; Morris A; Kitsios GD. "Improved Detection of Culprit Pathogens
by Bacterial DNA Sequencing Affects Antibiotic Management Decisions in Severe Pneumonia.". The American journal of case
reports (2018): http://europepmc.org/abstract/med/30473582.
10.12659/AJCR.912055
- Mustapha MM; Li B; Pacey MP; Mettus RT; McElheny CL; Marshall CW; Ernst RK; Cooper VS; Doi Y. "Phylogenomics of colistin-susceptible
and resistant XDR Acinetobacter baumannii.". The Journal of antimicrobial chemotherapy (2018): http://europepmc.org/abstract/med/30124845.
10.1093/jac/dky290
- Inês N. Silva; Filipa D. Pessoa; Marcelo J. Ramires; Mário R. Santos; Jörg D. Becker; Vaughn S. Cooper; Leonilde M. Moreira;
Yves V. Brun. "The OmpR Regulator of Burkholderia multivorans Controls Mucoid-to-Nonmucoid Transition and Other Cell Envelope
Properties Associated with Persistence in the Cystic Fibrosis Lung". Journal of Bacteriology 200 17 (2018): https://doi.org/10.1128/JB.00216-18.
10.1128/JB.00216-18
- Marcus M. Dillon; Way Sung; Michael Lynch; Vaughn S. Cooper; Michael T. Laub. "Periodic Variation of Mutation Rates in Bacterial
Genomes Associated with Replication Timing". mBio 9 4 (2018): https://doi.org/10.1128/mBio.01371-18.
10.1128/mBio.01371-18
- Le Sage V; Nanni AV; Bhagwat AR; Snyder DJ; Cooper VS; Lakdawala SS; Lee N. "Non-Uniform and Non-Random Binding of Nucleoprotein
to Influenza A and B Viral RNA.". Viruses (2018): http://europepmc.org/abstract/med/30257455.
10.3390/v10100522
- JohnCarlo Kristofich; Ivan Matic; Andrew B. Morgenthaler; Wallis R. Kinney; Christopher C. Ebmeier; Daniel J. Snyder; William
M. Old; Vaughn S. Cooper; Shelley D. Copley. "Synonymous mutations make dramatic contributions to fitness when growth is limited
by a weak-link enzyme". PLOS Genetics 14 8 (2018): e1007615-e1007615. https://doi.org/10.1371/journal.pgen.1007615.
10.1371/journal.pgen.1007615
- Caroline B. Turner; Christopher W. Marshall; Vaughn S. Cooper. "Parallel genetic adaptation across environments differing
in mode of growth or resource availability". Evolution Letters 2 4 (2018): 355-367. https://doi.org/10.1002/evl3.75.
10.1002/evl3.75
- Vaughn S. Cooper; Ana Cristina Gales. "Experimental Evolution as a High-Throughput Screen for Genetic Adaptations". mSphere
(2018): https://doi.org/10.1128/mSphere.00121-18.
10.1128/mSphere.00121-18
- Melinda R. Grosser; Andreas Peschel; Elyse Paluscio; Lance R. Thurlow; Marcus M. Dillon; Vaughn S. Cooper; Thomas H. Kawula;
Anthony R. Richardson. "Genetic requirements for Staphylococcus aureus nitric oxide resistance and virulence". PLOS Pathogens
14 3 (2018): e1006907-e1006907. https://doi.org/10.1371/journal.ppat.1006907.
10.1371/journal.ppat.1006907
- "New Insights from Elucidating the Role of LMP1 in Nasopharyngeal Carcinoma". Cancers (2018): http://www.mdpi.com/2072-6694/10/4/86.
10.3390/cancers10040086
- Qu Y; Olonisakin T; Bain W; Zupetic J; Brown R; Hulver M; Xiong Z; et al. "Thrombospondin-1 protects against pathogen-induced
lung injury by limiting extracellular matrix proteolysis.". JCI insight (2018): http://europepmc.org/abstract/med/29415890.
10.1172/jci.insight.96914
- Aaron E. Lucas; Ryota Ito; Mustapha M. Mustapha; Christi L. McElheny; Roberta T. Mettus; Sarah L. Bowler; Serena F. Kantz;
et al. "Frequency and Mechanisms of Spontaneous Fosfomycin Nonsusceptibility Observed upon Disk Diffusion Testing of Escherichia
coli". Journal of Clinical Microbiology (2018): https://doi.org/10.1128/JCM.01368-17.
10.1128/JCM.01368-17
- Leung LM; Cooper VS; Rasko DA; Guo Q; Pacey MP; McElheny CL; Mettus RT; et al. "Structural modification of LPS in colistin-resistant,
KPC-producing Klebsiella pneumoniae.". The Journal of antimicrobial chemotherapy (2017): http://europepmc.org/abstract/med/28961916.
10.1093/jac/dkx234
- Guo Y; Tomich AD; McElheny CL; Cooper VS; Tait-Kamradt A; Wang M; Hu F; et al. "High-Level Fosfomycin Resistance in Vancomycin-Resistant
Enterococcus faecium.". Emerging infectious diseases (2017): http://europepmc.org/abstract/med/29048285.
10.3201/eid2311.171130
- Feng Xu; Narjol Gonzalez-Escalona; Kevin P. Drees; Robert P. Sebra; Vaughn S. Cooper; Stephen H. Jones; Cheryl A. Whistler;
Andrew J. McBain. "Parallel Evolution of Two Clades of an Atlantic-Endemic Pathogenic Lineage of Vibrio parahaemolyticus by
Independent Acquisition of Related Pathogenicity Islands". Applied and Environmental Microbiology (2017): https://doi.org/10.1128/AEM.01168-17.
10.1128/AEM.01168-17
- Nara Lee; Valerie Le Sage; Adalena V. Nanni; Dan J. Snyder; Vaughn S. Cooper; Seema S. Lakdawala. "Genome-wide analysis of
influenza viral RNA and nucleoprotein association". Nucleic Acids Research (2017): https://doi.org/10.1093%2Fnar%2Fgkx584.
10.1093/nar/gkx584
- Haidar G; Philips NJ; Shields RK; Snyder D; Cheng S; Potoski BA; Doi Y; et al. "Ceftolozane-Tazobactam for the Treatment of
Multidrug-Resistant Pseudomonas aeruginosa Infections: Clinical Effectiveness and Evolution of Resistance.". Clinical infectious
diseases : an official publication of the Infectious Diseases Society of America (2017): http://europepmc.org/abstract/med/29017262.
10.1093/cid/cix182
- Hassan AA; Maldonado RF; Dos Santos SC; Di Lorenzo F; Silipo A; Coutinho CP; Cooper VS; et al. "Structure of O-Antigen and
Hybrid Biosynthetic Locus in Burkholderia cenocepacia Clonal Variants Recovered from a Cystic Fibrosis Patient.". Frontiers
in Microbiology (2017): http://europepmc.org/abstract/med/28642745.
10.3389/fmicb.2017.01027
- Pankey MS; Foxall RL; Ster IM; Perry LA; Schuster BM; Donner RA; Coyle M; Cooper VS; Whistler CA. "Host-selected mutations
converging on a global regulator drive an adaptive leap by bacteria to symbiosis.". (2017): http://europepmc.org/abstract/med/28447935.
10.7554/elife.24414
- Erin S. Honsa; Vaughn S. Cooper; Mohammed N. Mhaissen; Matthew Frank; Jessica Shaker; Amy Iverson; Jeffrey Rubnitz; et al.
"RelA Mutant Enterococcus faecium with Multiantibiotic Tolerance Arising in an Immunocompromised Host". mBio 8 1 (2017):
https://doi.org/10.1128/mBio.02124-16.
10.1128/mBio.02124-16
- Jiménez A; Castro JG; Munoz-Price LS; de Pascale D; Shimose L; Mustapha MM; Spychala CN; et al. "Outbreak of Klebsiella pneumoniae
Carbapenemase-Producing Citrobacter freundii at a Tertiary Acute Care Facility in Miami, Florida.". (2017): http://europepmc.org/abstract/med/27923418.
10.1017/ice.2016.273
- Xu F; Gonzalez-Escalona N; Haendiges J; Myers RA; Ferguson J; Stiles T; Hickey E; et al. "Sequence Type 631 Vibrio parahaemolyticus,
an Emerging Foodborne Pathogen in North America.". (2017): http://europepmc.org/abstract/med/27974540.
10.1128/jcm.02162-16
- Dillon MM; Sung W; Sebra R; Lynch M; Cooper VS. "Genome-Wide Biases in the Rate and Molecular Spectrum of Spontaneous Mutations
in Vibrio cholerae and Vibrio fischeri.". (2017): http://europepmc.org/abstract/med/27744412.
10.1093/molbev/msw224
- Peeters C; Cooper VS; Hatcher PJ; Verheyde B; Carlier A; Vandamme P. "Comparative genomics of Burkholderia multivorans, a
ubiquitous pathogen with a highly conserved genomic structure.". (2017): http://europepmc.org/abstract/med/28430818.
10.1371/journal.pone.0176191
- Dillon MM; Cooper VS. "The Fitness Effects of Spontaneous Mutations Nearly Unseen by Selection in a Bacterium with Multiple
Chromosomes.". (2016): http://europepmc.org/abstract/med/27672096.
10.1534/genetics.116.193060
- Qinglan Guo; Baixing Ding; Thomas Jové; Nicole Stoesser; Vaughn S. Cooper; Minggui Wang; Yohei Doi. "Characterization of a
Novel IncHI2 Plasmid Carrying Tandem Copies of bla CTX-M-2 in a fosA6 -Harboring Escherichia coli Sequence Type 410 Strain".
Antimicrobial Agents and Chemotherapy 60 11 (2016): 6742-6747. https://doi.org/10.1128/AAC.01173-16.
10.1128/AAC.01173-16
- Kenneth M. Flynn; Gabrielle Dowell; Thomas M. Johnson; Benjamin J. Koestler; Christopher M. Waters; Vaughn S. Cooper; G. A.
O'Toole. "Evolution of Ecological Diversity in Biofilms of Pseudomonas aeruginosa by Altered Cyclic Diguanylate Signaling".
Journal of Bacteriology 198 19 (2016): 2608-2618. https://doi.org/10.1128/JB.00048-16.
10.1128/JB.00048-16
- Marivic Martin; Theresa Hölscher; Anna Dragoš; Vaughn S. Cooper; Ákos T. Kovács; G. A. O'Toole. "Laboratory Evolution of Microbial
Interactions in Bacterial Biofilms". Journal of Bacteriology 198 19 (2016): 2564-2571. https://doi.org/10.1128/JB.01018-15.
10.1128/JB.01018-15
- Guo Q; Tomich AD; McElheny CL; Cooper VS; Stoesser N; Wang M; Sluis-Cremer N; Doi Y. "Glutathione-S-transferase FosA6 of Klebsiella
pneumoniae origin conferring fosfomycin resistance in ESBL-producing Escherichia coli.". (2016): http://europepmc.org/abstract/med/27261267.
10.1093/jac/dkw177
- Sung W; Ackerman MS; Dillon MM; Platt TG; Fuqua C; Cooper VS; Lynch M. "Evolution of the Insertion-Deletion Mutation Rate
Across the Tree of Life.". (2016): http://europepmc.org/abstract/med/27317782.
10.1534/g3.116.030890
- Inês N. Silva; Pedro M. Santos; Mário R. Santos; James E. A. Zlosnik; David P. Speert; Sean W. Buskirk; Eric L. Bruger; et
al. "Long-Term Evolution of Burkholderia multivorans during a Chronic Cystic Fibrosis Infection Reveals Shifting Forces of
Selection". mSystems 1 3 (2016): https://doi.org/10.1128/mSystems.00029-16.
10.1128/mSystems.00029-16
- Wang Y; Diaz Arenas C; Stoebel DM; Flynn K; Knapp E; Dillon MM; Wünsche A; et al. "Benefit of transferred mutations is better
predicted by the fitness of recipients than by their ecological or genetic relatedness.". (2016): http://europepmc.org/abstract/med/27091964.
10.1073/pnas.1524988113
- Dillon MM; Rouillard NP; Van Dam B; Gallet R; Cooper VS. "Diverse phenotypic and genetic responses to short-term selection
in evolving Escherichia coli populations.". (2016): http://europepmc.org/abstract/med/26995338.
10.1111/evo.12868
- Urquhart EA; Jones SH; Yu JW; Schuster BM; Marcinkiewicz AL; Whistler CA; Cooper VS. "Environmental Conditions Associated
with Elevated Vibrio parahaemolyticus Concentrations in Great Bay Estuary, New Hampshire.". (2016): http://europepmc.org/abstract/med/27144925.
10.1371/journal.pone.0155018
- Silva IN; Santos PM; Santos MR; Zlosnik JE; Speert DP; Buskirk SW; Bruger EL; et al. "Long-Term Evolution of Burkholderia
multivorans during a Chronic Cystic Fibrosis Infection Reveals Shifting Forces of Selection.". (2016): http://europepmc.org/abstract/med/27822534.
- Peeters C; Meier-Kolthoff JP; Verheyde B; De Brandt E; Cooper VS; Vandamme P. "Phylogenomic Study of Burkholderia glathei-like
Organisms, Proposal of 13 Novel Burkholderia Species and Emended Descriptions of Burkholderia sordidicola, Burkholderia zhejiangensis,
and Burkholderia grimmiae.". (2016): http://europepmc.org/abstract/med/27375597.
10.3389/fmicb.2016.00877
- Dillon MM; Sung W; Lynch M; Cooper VS. "The Rate and Molecular Spectrum of Spontaneous Mutations in the GC-Rich Multichromosome
Genome of Burkholderia cenocepacia.". (2015): http://europepmc.org/abstract/med/25971664.
10.1534/genetics.115.176834
- Whistler CA; Hall JA; Xu F; Ilyas S; Siwakoti P; Cooper VS; Jones SH. "Use of Whole-Genome Phylogeny and Comparisons for Development
of a Multiplex PCR Assay To Identify Sequence Type 36 Vibrio parahaemolyticus.". (2015): http://europepmc.org/abstract/med/25832299.
10.1128/JCM.00034-15
- Ellis CN; Traverse CC; Mayo-Smith L; Buskirk SW; Cooper VS. "Character displacement and the evolution of niche complementarity
in a model biofilm community.". (2015): http://europepmc.org/abstract/med/25494960.
10.1111/evo.12581
- Xu F; Ilyas S; Hall JA; Jones SH; Cooper VS; Whistler CA. "Genetic characterization of clinical and environmental Vibrio parahaemolyticus
from the Northeast USA reveals emerging resident and non-indigenous pathogen lineages.". (2015): http://europepmc.org/abstract/med/25904905.
10.3389/fmicb.2015.00272
- O'Rourke D; FitzGerald CE; Traverse CC; Cooper VS. "There and back again: consequences of biofilm specialization under selection
for dispersal.". (2015): http://europepmc.org/abstract/med/25717335.
10.3389/fgene.2015.00018
- Abebe-Akele F; Tisa LS; Cooper VS; Hatcher PJ; Abebe E; Thomas WK. "Genome sequence and comparative analysis of a putative
entomopathogenic Serratia isolated from Caenorhabditis briggsae.". (2015): http://europepmc.org/abstract/med/26187596.
10.1186/s12864-015-1697-8
- Cooper VS. "The origins of specialization: insights from bacteria held 25 years in captivity.". (2014): http://europepmc.org/abstract/med/24558348.
10.1371/journal.pbio.1001790
- Cooper, V.S.; Staples, R.K.; Traverse, C.C.; Ellis, C.N.. "Parallel evolution of small colony variants in Burkholderia cenocepacia
biofilms". Genomics (2014): http://www.scopus.com/inward/record.url?eid=2-s2.0-84908430306&partnerID=MN8TOARS.
10.1016/j.ygeno.2014.09.007
- Turner, P.E.; Williams, E.S.C.P.; Okeke, C.; Cooper, V.S.; Duffy, S.; Wertz, J.E.. "Antibiotic resistance correlates with
transmission in plasmid evolution". Evolution 68 12 (2014): 3368-3380. http://www.scopus.com/inward/record.url?eid=2-s2.0-84914141519&partnerID=MN8TOARS.
10.1111/evo.12537
- Flynn KM; Cooper TF; Moore FB; Cooper VS. "The environment affects epistatic interactions to alter the topology of an empirical
fitness landscape.". (2013): http://europepmc.org/abstract/med/23593024.
10.1371/journal.pgen.1003426
- Traverse CC; Mayo-Smith LM; Poltak SR; Cooper VS. "Tangled bank of experimentally evolved Burkholderia biofilms reflects selection
during chronic infections.". (2013): http://europepmc.org/abstract/med/23271804.
10.1073/pnas.1207025110
- Ellis CN; Schuster BM; Striplin MJ; Jones SH; Whistler CA; Cooper VS. "Influence of seasonality on the genetic diversity of
Vibrio parahaemolyticus in New Hampshire shellfish waters as determined by multilocus sequence analysis.". (2012): http://europepmc.org/abstract/med/22407686.
10.1128/AEM.07794-11
- Morrow JD; Cooper VS. "Evolutionary effects of translocations in bacterial genomes.". (2012): http://europepmc.org/abstract/med/23160175.
10.1093/gbe/evs099
- Schuster BM; Tyzik AL; Donner RA; Striplin MJ; Almagro-Moreno S; Jones SH; Cooper VS; Whistler CA. "Ecology and genetic structure
of a northern temperate Vibrio cholerae population related to toxigenic isolates.". (2011): http://europepmc.org/abstract/med/21926213.
10.1128/AEM.00378-11
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(2011): http://europepmc.org/abstract/med/20811470.
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