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Albano Gonçalo Beja Pereira. Completed the Doutoramento in Ciências Agrárias in 2005 by Universidade do Porto Faculdade de Ciências and Licenciatura in Engenharia Zootécnica in 1997 by Universidade dos Açores - Campus de Angra do Heroísmo. Is Assistant Professor in Universidade do Porto. Published 110 articles in journals. Has 2 section(s) of books and 2 book(s). Supervised 4 PhD thesis(es). Supervised 4 MSc dissertation(s). Has received 5 awards and/or honors. Participates and/or participated as Co-Principal Investigator (Co-PI) in 4 project(s), Invited Scientist Fellow in 1 project(s), Principal investigator in 8 project(s) and Researcher in 9 project(s). Works in the area(s) of Agrarian Sciences with emphasis on Animal and Dairy Science, Agrarian Sciences with emphasis on Veterinary Sciences and Natural sciences with emphasis on Biological Sciences with emphasis on Evolutionary Biology. In their professional activities interacted with 995 collaborator(s) co-authorship of scientific papers. In his curriculum Ciência Vitae the most frequent terms in the context of scientific, technological and artistic-cultural output are: wild boar; domestic pig; sngle nucleotide polymorphism; positive selection; balancing selection; Sus scrofa; parentage assignment; individual identification; microsatellite markers; GBP1; genetic variability; SNP; rare alleles; Domestication, co-evolution; Grapevine; Genomics; Genetic resources; Next Generation Sequencing; POPULATION GENOMICS; LIVESTOCK DIVERSITY; DOMESTICATION; ADAPTATION; ADMIXTURE.; Gene flow; Insights; Ancestry; Equids; DNA; grapevine; varieties; hybridization; GENÉTICA ANIMAL; CCR2; CCR5; divergence; haplotype; HIV-1; Oman; Horticultura (cadeias de valor); Eficiência dos recursos; Upgrade tecnológico; Valor acrescentado; Biodiversity; Conservation and Evolutionary Biology; Landscape Ecology and Planning; biodiversity; evolutionary biology; conservation biology; Population Genetics; Functional Diversity; Selection; Bos indicus; Evolution; Ecology; Conservation; Exome; Genetic variation; Phenotypic traits; .
Identification

Personal identification

Full name
Albano Gonçalo Beja Pereira

Citation names

  • Beja-Pereira, Albano
  • Pereira, Albano

Author identifiers

Ciência ID
401F-849E-A4A5
ORCID iD
0000-0002-1607-7382
Google Scholar ID
4kY9RIkAAAAJ
Researcher Id
B-3681-2008
Scopus Author Id
6603863523

Knowledge fields

  • Agrarian Sciences - Animal and Dairy Science
  • Agrarian Sciences - Veterinary Sciences
  • Natural sciences - Biological Sciences - Evolutionary Biology

Languages

Language Speaking Reading Writing Listening Peer-review
English Advanced (C1) Advanced (C1) Advanced (C1) Advanced (C1)
French Advanced (C1) Advanced (C1) Intermediate (B1) Advanced (C1)
Spanish; Castilian Advanced (C1) Advanced (C1) Advanced (C1) Advanced (C1)
German Beginner (A1) Beginner (A1) Beginner (A1) Intermediate (B1)
Portuguese Advanced (C1) Advanced (C1) Advanced (C1) Advanced (C1)
Education
Degree Classification
2005
Concluded
Ciências Agrárias (Doutoramento)
Major in Sem especialidade
Universidade do Porto Faculdade de Ciências, Portugal
"Origins, Diffusion and Evolucionary History of Livestock and Pastoralism Around Mediterranean Basin: Insights from Molecular Markers" (THESIS/DISSERTATION)
1991 - 1997
Concluded
Engenharia Zootécnica (Licenciatura)
Universidade dos Açores - Campus de Angra do Heroísmo, Portugal
"Genetic characterization of Ramo Grande cattle using microsatellites" (THESIS/DISSERTATION)
Quatorze (14)
Affiliation

Science

Category
Host institution
Employer
2013/12/17 - 2018/12/17 Principal Investigator (Research) Universidade do Porto Centro de Investigação em Biodiversidade e Recursos Genéticos, Portugal
2009/07/02 - 2013/12/16 Auxiliary Researcher (Research) Universidade do Porto Faculdade de Ciências, Portugal
2006/01 - 2009/06 Postdoc (Research) Universidade do Porto, Portugal
1997/11 - 2000/12 Research Assistant (Research) Instituto de Ciências Agrárias e Agro-alimentares da Universidade do Porto, Portugal

Teaching in Higher Education

Category
Host institution
Employer
2019/02/01 - Current Assistant Professor (University Teacher) Universidade do Porto, Portugal
2016 - 2019 Invited Assistant Professor (University Teacher) Universidade do Porto, Portugal
2013 - 2016 Assistant Professor (University Teacher) Universidade do Porto Faculdade de Ciências, Portugal

Positions / Appointments

Category
Host institution
Employer
2017 - 2018 Coordenação ou direção de centro de investigação, departamento ou equivalente Universidade do Porto, Portugal
Projects

Grant

Designation Funders
2019/11 - 2029/11 BIOPOLIS: Teaming to Upgrade Excellence in Environmental Biology, Ecosystem Research and AgroBiodiversity
Grant Agreement Number 763853
Grant Agreement Number 763853
Researcher
Universidade do Porto Centro de Investigação em Biodiversidade e Recursos Genéticos, Portugal
European Commission
Ongoing
2021 - 2026 Forest Biodiversity Lab
n.a.
Researcher
Associação BIOPOLIS - Rede de Investigação em Biodiversidade e Biologia Evolutiva, Portugal

Universidade do Porto Centro de Investigação em Biodiversidade e Recursos Genéticos, Portugal
EDULOG Fundação Belmiro de Azevedo
Ongoing
2021/03/01 - 2024/02/29 GrapeVision, genomics of modern and ancient DNA to empower Portuguese grapevine genetic resources
PTDC/BIA-FBT/2389/2020
Researcher
Rede de Investigação em Biodiversidade e Biologia Evolutiva, Portugal

Universidade de Lisboa Instituto Superior de Agronomia, Portugal

Universidade de Coimbra, Portugal

Instituto Nacional de Investigação Agrária e Veterinária, Portugal

Universidade do Porto Instituto de Ciências e Tecnologias Agrárias e Agro-Alimentares, Portugal
Fundação para a Ciência e a Tecnologia
Ongoing
2019/09 - 2023/08 INFEWS/T3 RCN: Brazil, Argentina, Colombia and United States Energy-Food Biotech Innovations Network (BACUS)
Invited Scientist Fellow
National Science Foundation Office of the Director
Ongoing
2020 - 2023 cLabel+: Alimentos inovadores clean label naturais, nutritivos e orientados para o consumidor.
POCI-01-0247-FEDER-046080
Researcher
Universidade do Porto GreenUPorto Centro de Investigação em Produção Agroalimentar Sustentável, Portugal
Comissao de Coordenacao e Desenvolvimento Regional do Norte
Ongoing
2018 - 2022/03/02 GERUOVI: Genome and Rumen Characterization of Native Portuguese Domestic Sheep
POCI-01-0145- FEDER-028575
Co-Principal Investigator (Co-PI)
Universidade do Porto Centro de Investigação em Biodiversidade e Recursos Genéticos, Portugal
Fundação para a Ciência e a Tecnologia
Concluded
2018 - 2021 GERUCA: Genome Characterization of Native Portuguese Domestic Goats and its rumen
POCI- 01-0145-FEDER-028866
Researcher
Universidade do Porto Centro de Investigação em Biodiversidade e Recursos Genéticos, Portugal
Fundação para a Ciência e a Tecnologia
Concluded
2016 - 2019 CompGen: Comparative genomics (B. taurus, B. indicus and O. aries) and genetic architecture of fitness and parasite resistance: validation in European Holstein
MICIIN-FEDER AGL2016-77813-R
MICIIN-FEDER AGL2016-77813-R
Researcher
Universidade do Porto Centro de Investigação em Biodiversidade e Recursos Genéticos, Portugal
España Ministerio de Ciencia e Innovación
2012/05 - 2015/04 Phylogeography and Conservation of the Threatened Asiatic Wild Ass Species Fundação para a Ciência e a Tecnologia, I.P.
2008/06 - 2012/05 Genetic Diversity, Conservation and Phylogenetic History of the African Wild Ass (Equus africanus): A Non-invasive molecular Approach.
Principal investigator
Universidade do Porto Centro de Investigação em Biodiversidade e Recursos Genéticos, Portugal
Fundação para a Ciência e a Tecnologia, I.P.
Concluded
2007/10 - 2011/09 How genetically different is a domestic pig from a wild boar? Detecting molecular signatures of differential selection in candidate genes involved in domestication process and molecular adaptation in domestic and wild pig.
Principal investigator
Fundação para a Ciência e a Tecnologia, I.P.
Concluded
2007/10 - 2011/09 Molecular detection and impact of multiple-sired litters in the wild and domestic pig
Principal investigator
Universidade do Porto Centro de Investigação em Biodiversidade e Recursos Genéticos, Portugal
Fundação para a Ciência e a Tecnologia, I.P.
Concluded
2008/01 - 2011/05 Development and Application of a Population Genomics Analysis Pipeline (PGAP) to Detect Adaptive Molecular Variation in Natural, Agricultural and Human Populations
Researcher
Fundação para a Ciência e a Tecnologia, I.P.
Concluded
2007/09 - 2011/02 Cross-species Transmission of Infectious Disease: A Population Genomic Approach Tracking Brucellosis in Wildlife, Livestock, and Humans
Co-Principal Investigator (Co-PI)
Universidade do Porto Centro de Investigação em Biodiversidade e Recursos Genéticos, Portugal
Fundação para a Ciência e a Tecnologia, I.P.
Concluded
2007/01 - 2010/03 Genome-wide approach to Detect Adaptative Molecular Variation in Domestic Ungulates
Principal investigator
Universidade do Porto Centro de Investigação em Biodiversidade e Recursos Genéticos, Portugal
Fundação para a Ciência e a Tecnologia, I.P.
Concluded
2005/10 - 2008/06 Genome-wide approach to Detect Adaptative Molecular Variation in Domestic Ungulates
Principal investigator
Universidade do Porto Centro de Investigação em Biodiversidade e Recursos Genéticos, Portugal
Fundação para a Ciência e a Tecnologia, I.P.
Concluded
1998/10/01 - 2000/12/31 ESTUDO DA VARIABILIDADE GENÉTICA DE RAÇAS BOVINAS AUTÓCTONES ATRAVÉS DA UTILIZAÇÃO DE MICROSSATÉLITES E DE POLIMORFISMOS PROTEÍCOS
PRAXIS XXI/BIC/17130/98
Researcher
Fundação para a Ciência e a Tecnologia
Concluded

Contract

Designation Funders
2023/02/01 - Current MICRODAI The bacterial and fungal microbiome of Portuguese dairy farms
2022.08540.PTDC
Researcher
Associação BIOPOLIS - Rede de Investigação em Biodiversidade e Biologia Evolutiva, Portugal
Fundação para a Ciência e a Tecnologia
Ongoing
2024/01 - 2026/12 FUNDIVE FunDive: Monitoring and mapping Fungal Diversity for nature conservation
BiodivMon/0004/2022
BIODIVERSA
Principal investigator
Associação BIOPOLIS - Rede de Investigação em Biodiversidade e Biologia Evolutiva, Portugal
Fundação para a Ciência e a Tecnologia
Ongoing
2021/01/01 - 2025/12/31 Institute for innovation, capacity building and sustainability of agri-food production
LA/P/0126/2020
Universidade de Trás-os-Montes e Alto Douro Centro de Investigação e de Tecnologias Agro-Ambientais e Biologicas, Portugal

Universidade de Trás-os-Montes e Alto Douro, Portugal

Universidade do Porto Faculdade de Ciências, Portugal
Fundação para a Ciência e a Tecnologia
Ongoing
2021/01/01 - 2025/12/31 Research Network in Biodiversity and Evolutionary Biology (InBIO)
LA/P/0048/2020
Universidade de Lisboa Instituto Superior de Agronomia, Portugal

Fundação Gaspar Frutuoso, Portugal

Universidade do Porto Instituto de Ciências Tecnologias e Agroambiente, Portugal

Rede de Investigação em Biodiversidade e Biologia Evolutiva, Portugal
Fundação para a Ciência e a Tecnologia
Ongoing
2022/12 - 2025/12 Promoting action on broad ocean challenges by delving into the past, present and future of European syngnathids
DivProtect/0004/2021
Co-Principal Investigator (Co-PI)
Associação BIOPOLIS - Rede de Investigação em Biodiversidade e Biologia Evolutiva, Portugal
Fundação para a Ciência e a Tecnologia
Ongoing
2023/01 - 2023/12 UP4REHAB Unidade de Paisagem para o Restauro de Habitats Consortium
13/REACT-EU/2021
Principal investigator
Associação BIOPOLIS - Rede de Investigação em Biodiversidade e Biologia Evolutiva, Portugal
Autoridade de Gestão do Programa Operacional Competitividade e Internacionalização
Concluded
2016 - 2020 Modelos para a incorporação da selecção genómica na avaliação genética de bovinos da raça Holandesa no Brasil e em Portugal
Edital 039/2014-Processo nº 99999.008462/2014-03
Universidade do Porto Instituto de Ciências Biomédicas Abel Salazar, Portugal

Universidade do Porto Centro de Investigação em Biodiversidade e Recursos Genéticos, Portugal

Universidade Federal de Viçosa Centro de Ciências Agrárias, Brazil
Coordenação de Aperfeiçoamento de Pessoal de Nível Superior

Universidade Nova de Lisboa Associação para a Inovação e Desenvolvimento da FCT
Concluded
2019/01/01 - 2019/12/31 Research Network in Biodiversity and Evolutionary Biology
UID/BIA/50027/2019
LA/P/0048/2020
Rede de Investigação em Biodiversidade e Biologia Evolutiva, Portugal

Universidade do Porto Instituto de Ciências Tecnologias e Agroambiente, Portugal

Universidade de Lisboa Instituto Superior de Agronomia, Portugal

Fundação Gaspar Frutuoso, Portugal

Universidade dos Açores, Portugal
Fundação para a Ciência e a Tecnologia
Concluded
2013/12/19 - 2018/12/18 Going with the crowd: A livestock multi-species approach to infer patterns of population admixture and local adaptation HERDMIXTURE
IF/00370/2013/CP1154/CT0002
Universidade do Porto Instituto de Ciências e Tecnologias Agrárias e Agro-Alimentares, Portugal
Fundação para a Ciência e a Tecnologia
Concluded
2012/04/01 - 2015/09/30 Assessing The Whole-Genome Structure and Variation of the Tropical Adapted Zebu Cattle (Bos indicus) using Dense SNP Maps
PTDC/CVT/117851/2010
Principal investigator
Universidade do Porto Instituto de Ciências Tecnologias e Agroambiente, Portugal

Centro de Investigação em Biodiversidade e Recursos Genéticos, Portugal

Universidade do Porto Centro de Investigação em Biodiversidade e Recursos Genéticos, Portugal
Fundação para a Ciência e a Tecnologia

Fundação para a Ciência e a Tecnologia, I.P.
Concluded
2010/03/01 - 2013/08/31 Detecting Functional Genetic Variation Using an “Exomics” Approach: Massively Parallel Sequencing of Exons from Cattle and Pigs
PTDC/CVT/099782/2008
Co-Principal Investigator (Co-PI)
Universidade do Porto Instituto de Ciências Tecnologias e Agroambiente, Portugal

Centro de Investigação em Biodiversidade e Recursos Genéticos, Portugal

Universidade do Porto Centro de Investigação em Biodiversidade e Recursos Genéticos, Portugal
Fundação para a Ciência e a Tecnologia

Fundação para a Ciência e a Tecnologia, I.P.
Concluded
2011/01/01 - 2012/12/31 Strategic Project - UI 609 - 2011-2012
PEst-C/BIA/UI0609/2011
Universidade do Porto Instituto de Ciências Tecnologias e Agroambiente, Portugal

Centro de Investigação em Biodiversidade e Recursos Genéticos, Portugal
Fundação para a Ciência e a Tecnologia
Concluded
2005 - 2006 Conservation genetics and promotion of Portuguese donkey breeds
AGRO/793
Universidade do Porto Centro de Investigação em Biodiversidade e Recursos Genéticos, Portugal
Ministério da Agricultura Florestas e Desenvolvimento Rural
Concluded
Outputs

Publications

Book
  1. Geigl, E.-M.; Bar-David, S.; Beja-Pereira, A.; Gus Cothran, E.; Giulotto, E.; Hrabar, H.; Oyunsuren, T.; Pruvost, M.. Genetics and paleogenetics of equids. 2016.
  2. Beja-Pereira, Albano; Ferrand, Nuno. Beja-Pereira A. and Ferrand N. (2005) Genética, Biotecnologia e Agricultura.. Lisboa: Sociedade Portuguesa de Inovação. 2005.
    Published
Book chapter
  1. Vilà, C.; Leonard, J.A.; Beja-Pereira, A.. "Genetic documentation of horse and donkey domestication". In Documenting Domestication, edited by Zeder, Melinda A.; Bradley, D. G.; Emshwiller, Eve; Smith, Bruce D.. Berkeley, United States: University of California Press, 2006.
    Published
  2. Beja-Pereira, Albano; Ferrand, Nuno. "Beja-Pereira A. and Ferrand N. (2001) Origem e historia da raca Barrosa.". In Raça Barrosã. Braga, Portugal: AMIBA, 2001.
    Published
Conference abstract
  1. Cunha, Raquel; Duarte-Coimbra, Sofia; Amorim, Irina; Guimarães, Tiago; Lopes, Jordana; Marques, D; Pérez-Pardal, Lucía; Rocha, Antonio; Beja-Pereira, Albano. "Diversidade do microbioma do clitóris em éguas reprodutoras: Implicações em endometrites e na saúde reprodutiva da égua". Paper presented in VII Jornadas do Grupo de Trabalho de Investigação em Equídeos, Lisbon, 2023.
    Published
Conference poster
  1. Duarte-Coimbra, Sofia; Pérez-Pardal, Lucía; Porto, Miguel; Pedro Rui Beja; Moreira, Francisco; Beja-Pereira, Albano. Corresponding author: Duarte-Coimbra, Sofia. "Monitorization of the Community Structure and Diversity of Soil Microbiome in a Young Florest". Paper presented in Environmental and Agronomical Genomics Symposium, 2024.
  2. Duarte-Coimbra, Sofia; Pérez-Pardal, Lucía; Porto, Miguel; Pedro Rui Beja; Moreira, Francisco; Beja-Pereira, Albano. Corresponding author: Duarte-Coimbra, Sofia. "Monitoring the Soil Microbial Diversity in Young Florests". Paper presented in Third Global Soil Biodiversity Conference, 2023.
  3. Machado da Silva, Tiago; Beja-Pereira, Albano; Cunha, Luís Miguel. "The relationship between heterozygous genotypes in taste receptor genes, taste perception and food choice". Paper presented in EuroSense 2022,, 2022.
  4. Forcina, Giovanni; Chalbi, S.; Pérez-Pardal, Lucía; Dos Santos, Américo; Carvalheira, Julio Gil Vale; Djemali M.; Gaddour, A.; Bedihaf-Romdhani, S.; Beja-Pereira, Albano. "Comparative rumen microbiomics of livestock breeds from Portugal and Africa.". Paper presented in 72nd Congress of the European Federation of Animal Sciences (EAAP), 2021.
  5. Forcina, Giovanni; Dos Santos, A.; Pérez-Pardal, Lucía; Carvalheira, Julio Gil Vale; Beja-Pereira, Albano. Corresponding author: Forcina, Giovanni. "Rumen microbiome of domestic ruminants from extreme environments.". Paper presented in 71st Congress of the European Federation of Animal Sciences (EAAP), 2020.
  6. de Cara, M.A.R.; Pérez-Pardal, Lucía; Beja-Pereira, Albano. "SNP genotyping of Iranian wild boars reveals their uniqueness". Paper presented in Biodiversity Genomics 2020, 2020.
Journal article
  1. Nicola Rambaldi Migliore; Daniele Bigi; Marco Milanesi; Paolo Zambonelli; Riccardo Negrini; Simone Morabito; Andrea Verini-Supplizi; et al. "Mitochondrial DNA control-region and coding-region data highlight geographically structured diversity and post-domestication population dynamics in worldwide donkeys". PLOS ONE (2024): http://dx.doi.org/10.1371/journal.pone.0307511.
    10.1371/journal.pone.0307511
  2. Katherine D. Arias; Hanboreum Lee; Riccardo Bozzi; Isabel Álvarez; Juan Pablo Gutiérrez; Iván Fernandez; Juan Menéndez; Albano Beja-Pereira; Félix Goyache. "Ascertaining the genetic background of the Celtic-Iberian pig strain: A signatures of selection approach". Journal of Animal Breeding and Genetics (2024): https://doi.org/10.1111/jbg.12829.
    10.1111/jbg.12829
  3. Beja-Pereira A.. "Inocybe dagamae sp. nov., Fungal Planet 1572". Persoonia - Molecular Phylogeny and Evolution of Fungi (2023): https://doi.org/10.3767/persoonia.2023.51.08.
    10.3767/persoonia.2023.51.08
  4. Vasco Fachada; Ditte Bandini; Albano Beja-Pereira. "Two new species of Inocybe from Mediterranean Cistaceae heathlands". Mycologia (2023): https://doi.org/10.1080/00275514.2023.2284557.
    10.1080/00275514.2023.2284557
  5. Duarte-Coimbra, S.; Forcina, G.; Pérez-Pardal, L.; Beja-Pereira, A.. "Characterization of tongue dorsum microbiome in wine tasters". Food Research International 163 (2023): http://www.scopus.com/inward/record.url?eid=2-s2.0-85143535797&partnerID=MN8TOARS.
    10.1016/j.foodres.2022.112259
  6. Babiker, H.A.; Al-Jardani, A.; Al-Azri, S.; Petit, R.A.; Saad, E.; Al-Mahrouqi, S.; Mohamed, R.A.H.; et al. "Mycobacterium tuberculosis epidemiology in Oman: whole-genome sequencing uncovers transmission pathways". Microbiology Spectrum 11 5 (2023): http://www.scopus.com/inward/record.url?eid=2-s2.0-85175558699&partnerID=MN8TOARS.
    10.1128/spectrum.02420-23
  7. Giovanni Forcina; Lucía Pérez-Pardal; Júlio Carvalheira; Albano Beja-Pereira. "Gut Microbiome Studies in Livestock: Achievements, Challenges, and Perspectives". Animals (2022): https://doi.org/10.3390/ani12233375.
    10.3390/ani12233375
  8. Beja-Pereira A.; Todd, Evelyn T.; Tonasso-Calvière, Laure; Chauvey, Lorelei; Schiavinato, Stéphanie; Fages, Antoine; Seguin-Orlando, Andaine; et al. "The genomic history and global expansion of domestic donkeys". Science 377 6611 (2022): 1172-1180. http://dx.doi.org/10.1126/science.abo3503.
    10.1126/science.abo3503
  9. VarGoats Consortium; Isaäc J. Nijman; Benjamin D. Rosen; Philippe Bardou; Thomas Faraut; Tristan Cumer; Kevin G. Daly; et al. "Geographical contrasts of Y-chromosomal haplogroups from wild and domestic goats reveal ancient migrations and recent introgressions". Molecular Ecology 31 16 (2022): 4364-4380. http://dx.doi.org/10.1111/mec.16579.
    10.1111/mec.16579
  10. Beja-Pereira A.. "Whole-Genome Analysis Deciphers Population Structure and Genetic Introgression Among Bovine Species". Frontiers in Genetics 13 (2022): http://dx.doi.org/10.3389/fgene.2022.847492.
    10.3389/fgene.2022.847492
  11. Al-Hamidhi, Salama; Parveen, Asia; Iqbal, Furhan; Asif, Muhammad; Akhtar, Naheed; Elshafie, Elshafie I.; Beja-Pereira, Albano; Babiker, Hamza A.. "Diversity and Genetic Structure of Theileria annulata in Pakistan and Other Endemic Sites". Pathogens 11 3 (2022): 334. http://dx.doi.org/10.3390/pathogens11030334.
    10.3390/pathogens11030334
  12. Kefena, E.; Rosenbom, S.; Beja-Pereira, A.; Kurtu, M. Yusuf; Han, J. L.; Dessie, T.. "Genetic diversity and population genetic structure in native Ethiopian donkeys (Equus asinus) inferred from equine microsatellite markers". Tropical Animal Health and Production 53 3 (2021): http://dx.doi.org/10.1007/s11250-021-02776-2.
    10.1007/s11250-021-02776-2
  13. Kefena Effa; Sonia Rosenbom; Jianlin Han; Tadelle Dessie; Albano Beja-Pereira. "Genetic Diversities and Historical Dynamics of Native Ethiopian Horse Populations (Equus caballus) Inferred from Mitochondrial DNA Polymorphisms". Genes 12 2 (2021): 155-155. https://doi.org/10.3390/genes12020155.
    10.3390/genes12020155
  14. Almeida-Santos, A.; Martins-Mendes, D.; Gayà-Vidal, M.; Pérez-Pardal, L.; Beja-Pereira, A.. "Characterization of the Oral Microbiome of Medicated Type-2 Diabetes Patients". Frontiers in Microbiology 12 (2021): http://www.scopus.com/inward/record.url?eid=2-s2.0-85101197441&partnerID=MN8TOARS.
    10.3389/fmicb.2021.610370
  15. Schweizer, R.M.; Saarman, N.; Ramstad, K.M.; Forester, B.R.; Kelley, J.L.; Hand, B.K.; Malison, R.L.; et al. "Big Data in Conservation Genomics: Boosting Skills, Hedging Bets, and Staying Current in the Field". Journal of Heredity 112 4 (2021): 313-327. http://www.scopus.com/inward/record.url?eid=2-s2.0-85111872095&partnerID=MN8TOARS.
    10.1093/jhered/esab019
  16. Freitas, Sara; Gazda, Malgorzata A.; Rebelo, Miguel A.; Muñoz-Pajares, Antonio J.; Vila-Viçosa, Carlos; Muñoz-Mérida, Antonio; Gonçalves, Luís M.; et al. "Pervasive hybridization with local wild relatives in Western European grapevine varieties". Science Advances 7 47 (2021): http://hdl.handle.net/10400.5/23243.
    10.1126/sciadv.abi8584
  17. Yusefi, G.H.; Khalatbari, L.; Jowers, M.J.; Fahimi, H.; Costa, V.; Björklund, M.; Beja-Pereira, A.. "Phylogenetic analysis of marginal Asiatic black bears reveals a recent Iranian–Himalayan divergence and has implications for taxonomy and conservation". Mammalian Biology 100 4 (2020): 419-427. http://www.scopus.com/inward/record.url?eid=2-s2.0-85086874647&partnerID=MN8TOARS.
    10.1007/s42991-020-00044-8
  18. Luzuriaga-Neira, Agusto; Pérez-Pardal, Lucía; O’Rourke, Sean M.; Villacís-Rivas, Gustavo; Cueva-Castillo, Freddy; Escudero-Sánchez, Galo; Aguirre-Pabón, Juan Carlos; et al. "The Local South American Chicken Populations Are a Melting-Pot of Genomic Diversity". Frontiers in Genetics 10 (2019): http://dx.doi.org/10.3389/fgene.2019.01172.
    10.60692/9ydct-b3z20
  19. Luzuriaga-Neira A.; Pérez-Pardal L.; O'Rourke S.M.; Villacís-Rivas G.; Cueva-Castillo F.; Escudero-Sánchez G.; Ulloa-Nuñez A.; et al. "Genome scan for selection in South American chickens reveals a region under selection associated with aggressiveness". Livestock Science 225 (2019): 135-139. https://doi.org/10.1016/j.livsci.2019.05.002.
    10.1016/j.livsci.2019.05.002
  20. Al-Araimi, N.A.; Al-Atiyat, R.M.; Luzuriaga-Neira, A.; Mahgoub Gaafar, O.; Kadim, I.T.; Al-Marzooqi, W.; Babiker, H.A.; et al. "Genetic structure of Omani goats reveals admixture among populations from geographically proximal sites". Small Ruminant Research 178 (2019): 1-6. http://www.scopus.com/inward/record.url?eid=2-s2.0-85069572167&partnerID=MN8TOARS.
    10.1016/j.smallrumres.2019.07.005
  21. Bâlteanu, V.A.; Cardoso, T.F.; Amills, M.; Egerszegi, I.; Anton, I.; Beja-Pereira, A.; Zsolnai, A.; Bâlteanu, V. A.; Cardoso, T. F.. "The footprint of recent and strong demographic decline in the genomes of Mangalitza pigs". Animal (2019): 1-7. http://www.scopus.com/inward/record.url?eid=2-s2.0-85063984948&partnerID=MN8TOARS.
    10.1017/S1751731119000582
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  24. A. Luzuriaga-Neira; G. Villacís-Rivas; F. Cueva-Castillo; G. Escudero-Sánchez; A. Ulloa-Nuñez; M. Rubilar-Quezada; R. Monteiro; M. R. Miller; A. Beja-Pereira. "On the origins and genetic diversity of South American chickens: one step closer". Animal Genetics (2017): https://doi.org/10.1111%2Fage.12537.
    10.1111/age.12537
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    10.1007/s10344-016-1058-1
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  32. Al-Hamidhi, Salama; Weir, William; Kinnaird, Jane; Tageledin, Mohemmed; Beja-Pereira, Albano; Morrison, Ivan; Thompson, Joanne; et al. "Theileria lestoquardi displays reduced genetic diversity relative to sympatric Theileria annulata in Oman". Infection, Genetics and Evolution 43 (2016): 297-306. http://dx.doi.org/10.1016/j.meegid.2016.05.007.
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    10.1016/j.ympev.2015.01.005
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    10.1371/journal.pone.0115394
  42. Hand, Brian K.; Chen, Shanyuan; Anderson, Neil; Beja-Pereira, Albano; Cross, Paul C.; Ebinger, Michael; Edwards, Hank; et al. "Sex-Biased Gene Flow Among Elk in the Greater Yellowstone Ecosystem". Journal of Fish and Wildlife Management 5 1 (2014): 124-132. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000338436900012&KeyUID=WOS:000338436900012.
    10.3996/022012-JFWM-017
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    10.1016/j.livsci.2014.06.006
  44. Al-Hamidhi, S.; Mahdy, M.A.K.; Idris, M.A.; Bin Dajem, S.M.; Al-Sheikh, A.A.H.; Al-Qahtani, A.; Al-Hashami, Z.; et al. "The prospect of malaria elimination in the Arabian Peninsula: A population genetic approach". Infection, Genetics and Evolution 27 (2014): 25-31. http://www.scopus.com/inward/record.url?eid=2-s2.0-84904316939&partnerID=MN8TOARS.
    10.1016/j.meegid.2014.06.015
  45. Lenstra, Johannes; Ajmone-Marsan, Paolo; Beja-Pereira, Albano; Bollongino, Ruth; Bradley, Daniel; Colli, Licia; De Gaetano, Anna; et al. "Meta-Analysis of Mitochondrial DNA Reveals Several Population Bottlenecks during Worldwide Migrations of Cattle". Diversity 6 1 (2014): 178-178.
    10.3390/d6010178
  46. Colli, Licia; Joost, Stephane; Negrini, Riccardo; Nicoloso, Letizia; Crepaldi, Paola; Ajmone-Marsan, Paolo; ECONOGENE Consortium. "Assessing The Spatial Dependence of Adaptive Loci in 43 European and Western Asian Goat Breeds Using AFLP Markers". Plos One 9 1 (2014): http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000330617100024&KeyUID=WOS:000330617100024.
    10.1371/journal.pone.0086668
  47. Cosart, Ted; Beja-Pereira, Albano; Luikart, Gordon. "EXONSAMPLER: a computer program for genome-wide and candidate gene exon sampling for targeted next-generation sequencing". Molecular Ecology Resources 14 6 (2014): 1296-1301. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000343805400018&KeyUID=WOS:000343805400018.
    10.1111/1755-0998.12267
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    10.1007/s00251-013-0718-5
  49. Al-Mahruqi,Samira H.; Zadjali,Fahad; Beja-Pereira,Albano; Koh,Crystal Y.; Balkhair,Abdullah; Al-Jabri,Ali A.; Al-Mahruqi, Samira H.; et al. "Genetic diversity and prevalence of CCR2-CCR5 gene polymorphisms in the Omani population". Genetics and Molecular Biology 37 1 (2014): 7-14. http://old.scielo.br/scielo.php?script=sci_arttext&pid=S1415-47572014000100004.
    10.1590/S1415-47572014000100004
  50. Pérez-Pardal, L.; Grizelj, J.; Traoré, A.; Cubric-Curik, V.; Arsenos, G.; Dovenski, T.; Markovic, B.; et al. "Lack of mitochondrial DNA structure in Balkan donkey is consistent with a quick spread of the species after domestication". Animal Genetics na (2013): n/a-n/a.
    Published • 10.1111/age.12086
  51. Bhuiyan, M. S. A.; Chen, Shanyuan; Faruque, S.; Bhuiyan, A. K. F. H.; Beja-Pereira, Albano. "Genetic diversity and maternal origin of Bangladeshi chicken". Molecular Biology Reports 40 6 (2013): 4123-4128.
    Published • 10.1007/s11033-013-2522-6
  52. Kimura, Birgitta; Marshall, Fiona; Beja-Pereira, Albano; Mulligan, Connie. "Donkey Domestication". African Archaeological Review 30 1 (2013): 83-95.
    Published • 10.1007/s10437-012-9126-8
  53. Mahgoub, Osman; Babiker, Hamza A.; Kadim, I.T.; Al-Kindi, Mohammed; Hassan, Salwa; Al-Marzooqi, W.; Eltahir, Yasmin E.; et al. "Disclosing the origin and diversity of Omani cattle". Animal Genetics 44 3 (2013): 336-339.
    Published • 10.1111/j.1365-2052.2012.02399.x
  54. Costa, Vânia; Pérez-González, Javier; Santos, Pedro; Fernández-Llario, Pedro; Carranza, Juan; Zsolnai, Attila; Anton, István; et al. "Microsatellite markers for identification and parentage analysis in the European wild boar (Sus scrofa)". BMC Research Notes 5 1 (2012): http://dx.doi.org/10.1186/1756-0500-5-479.
    10.1186/1756-0500-5-479
  55. Chen, Shanyuan; Gomes, Rui; Costa, Vânia; Rocha, Isabel; Zsolnai, Attila; Anton, István; Charneca, Rui; et al. "Novel coding genetic variants of the GBP1 gene in wild and domestic pigs (Sus scrofa)". Livestock Science 146 1 (2012): 1-4. http://dx.doi.org/10.1016/j.livsci.2012.02.008.
    10.1016/j.livsci.2012.02.008
  56. Miao, Y-W; Peng, M-S; Wu, G-S; Ouyang, Y-N; Yang, Z-Y; Yu, N; Liang, J-P; et al. "Chicken domestication: an updated perspective based on mitochondrial genomes". Heredity 110 3 (2012): 277-282.
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  57. Al-Farsi, Hissa M.; Al-Hashami, Zainab S.; Bin Dajem, Saad M.; Al-Sheikh, Adel Ali H.; Al-Qahtani, Ahmed; Beja-Pereira, Albano; Idris, Mohamed A.; Babiker, Hamza A.. "Source of drug resistant Plasmodium falciparum in a potential malaria elimination site in Saudi Arabia". Infection, Genetics and Evolution 12 6 (2012): 1253-1259.
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  58. Kefena, E.; Mekasha, Y.; Han, J.L.; Rosenbom, S.; Haile, A.; Dessie, T.; Beja-Pereira, A.. "Discordances between morphological systematics and molecular taxonomy in the stem line of equids: A review of the case of taxonomy of genus Equus". Livestock Science 143 2-3 (2012): 105-115.
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  59. Ferreira, Ana Cristina; Almendra, Cláudia; Cardoso, Regina; Pereira, Marta Silva; Beja-Pereira, Albano; Luikart, Gordon; Corrêa de Sá, Maria Inácia. "Development and evaluation of a selective medium for Brucella suis". Research in Veterinary Science 93 2 (2012): 565-567.
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  60. Kefena,E.; Dessie,T.; Han,J.L.; Kurtu,M.Y.; Rosenbom,S.; Beja-Pereira,A.; Kefena, E.; et al. "Morphological diversities and ecozones of Ethiopian horse populations". Animal Genetic Resources 50 na (2012): 1-12. http://dx.doi.org/10.1017/S2078633612000021.
    Published • doi:10.1017/S2078633612000021
  61. Cosart, Ted; Beja-Pereira, Albano; Chen, Shanyuan; Ng, Sarah B; Shendure, Jay; Luikart, Gordon. "Exome-wide DNA capture and next generation sequencing in domestic and wild species". BMC Genomics 12 1 (2011): 347-347.
    Published • 10.1186/1471-2164-12-347
  62. Rocha, Joana; Chen, Shanyuan; Beja-Pereira, Albano. "Molecular evidence for fat-tailed sheep domestication". Tropical Animal Health and Production 43 7 (2011): 1237-1243.
    Published • 10.1007/s11250-011-9854-9
  63. Chen, Shanyuan; Costa, Vânia; Beja-Pereira, Albano. "Evolutionary patterns of two major reproduction candidate genes (Zp2 and Zp3) reveal no contribution to reproductive isolation between bovine species". BMC Evolutionary Biology 11 1 (2011): 24-24.
    Published • 10.1186/1471-2148-11-24
  64. Luikart, G.; Amish, S. J.; Winnie, J.; Beja-Pereira, A.; Godinho, R.; Allendorf, F. W.; Harris, R. B.. "High connectivity among argali sheep from Afghanistan and adjacent countries: Inferences from neutral and candidate gene microsatellites". Conservation Genetics 12 4 (2011): 921-931.
    Published • 10.1007/s10592-011-0195-z
  65. Kefena, E.; Beja-Pereira, A.; Han, J.L.; Haile, A.; Mohammed, Y.K.; Dessie, T.. "Eco-geographical structuring and morphological diversities in Ethiopian donkey populations". Livestock Science 141 2-3 (2011): 232-241.
    Published • 10.1016/j.livsci.2011.06.011
  66. Rosenbom, Sónia; Costa, Vânia; Steck, Beatrice; Moehlman, Patricia; Beja-Pereira, Albano. "Cross-species genetic markers: a useful tool to study the world's most threatened wild equid—Equus africanus". European Journal of Wildlife Research 58 3 (2011): 609-613.
    Published • 10.1007/s10344-011-0578-y
  67. Pérez-Pardal, L.; Ginja, C.; Royo, L. J.; ¿?lvarez, I.; Fernández, I.; del Valle, A.; Traoré, A.; et al. "Genetic structure of the bovine Y-specific microsatellite UMN0103 reflects the genetic history of the species". Animal Genetics 42 5 (2011): 566-567.
    Published • 10.1111/j.1365-2052.2011.02177.x
  68. Felius, M.; Koolmees, P.A.; Theunissen, B.; Lenstra, J.A.; Baumung, R.; Manatrinon, S.; Mommens, G.; et al. "On the breeds of cattle-Historic and current classifications". Diversity 3 4 (2011): 660-692. http://www.scopus.com/inward/record.url?eid=2-s2.0-84859322514&partnerID=MN8TOARS.
    10.3390/d3040660
  69. Ezenwa, Vanessa O.; Etienne, Rampal S.; Luikart, Gordon; Beja-Pereira, Albano; Jolles, Anna E.. "Hidden Consequences of Living in a Wormy World: Nematode¿?Induced Immune Suppression Facilitates Tuberculosis Invasion in African Buffalo". The American Naturalist 176 5 (2010): 613-624.
    Published • 10.1086/656496
  70. Kimura, B.; Marshall, F. B.; Chen, S.; Rosenbom, S.; Moehlman, P. D.; Tuross, N.; Sabin, R. C.; et al. "Ancient DNA from Nubian and Somali wild ass provides insights into donkey ancestry and domestication". Proceedings of the Royal Society B: Biological Sciences 278 1702 (2010): 50-57.
    Published • 10.1098/rspb.2010.0708
  71. Pérez-Pardal, L.; Royo, L. J.; Beja-Pereira, A.; Curik, I.; Traoré, A.; Fernández, I.; Sölkner, J.; et al. "Y-specific microsatellites reveal an African subfamily in taurine (Bos taurus) cattle". Animal Genetics 41 3 (2010): 232-241.
    Published • 10.1111/j.1365-2052.2009.01988.x
  72. Pérez-Pardal, L.; Royo, L. J.; Beja-Pereira, A.; Chen, S.; Cantet, R J C; Traoré, A.; Curik, I.; et al. "Multiple paternal origins of domestic cattle revealed by Y-specific interspersed multilocus microsatellites". Heredity 105 6 (2010): 511-519.
    Published • 10.1038/hdy.2010.30
  73. Harris, Richard B.; Winnie, John; Amish, Stephen J.; Beja-Pereira, Albano; Godinho, Raquel; Costa, Vânia; Luikart, Gordon. "Argali Abundance in the Afghan Pamir Using Capture–Recapture Modeling From Fecal DNA". Journal of Wildlife Management 74 4 (2010): 668-677.
    Published • 10.2193/2009-292
  74. Laloë, D.; Moazami-Goudarzi, K.; Lenstra, J.A.; Marsan, P.A.; Azor, P.; Baumung, R.; Bradley, D.G.; et al. "Spatial trends of genetic variation of domestic ruminants in Europe". Diversity 2 6 (2010): 932-945. http://www.scopus.com/inward/record.url?eid=2-s2.0-77958529371&partnerID=MN8TOARS.
    10.3390/d2060932
  75. Beja-Pereira, Albano. "Genome 10K: A Proposal to Obtain Whole-Genome Sequence for 10 000 Vertebrate Species". Journal of Heredity 100 6 (2009): 659-674.
    Published • 10.1093/jhered/esp086
  76. Beja-Pereira, Albano; OLIVEIRA, RITA; ALVES, PAULO C.; SCHWARTZ, MICHAEL K.; Luikart, Gordon. "Advancing ecological understandings through technological transformations in noninvasive genetics". Molecular Ecology Resources 9 5 (2009): 1279-1301.
    Published • 10.1111/j.1755-0998.2009.02699.x
  77. Chen, S.; Lin, B.-Z.; Baig, M.; Mitra, B.; Lopes, R. J.; Santos, A. M.; Magee, D. A.; et al. "Zebu Cattle Are an Exclusive Legacy of the South Asia Neolithic". Molecular Biology and Evolution 27 1 (2009): 1-6.
    Published • 10.1093/molbev/msp213
  78. Beja-Pereira, Albano; Bricker, Betsy; Chen, Shanyuan; Almendra, Claudia; White, P. J.; Luikart, Gordon. "DNA Genotyping Suggests that Recent Brucellosis Outbreaks in the Greater Yellowstone Area Originated from Elk". Journal of Wildlife Diseases 45 4 (2009): 1174-1177.
    Published • 10.7589/0090-3558-45.4.1174
  79. Pariset, Lorraine; Joost, Stephane; Marsan, Paolo; Valentini, Alessio. "Landscape genomics and biased FST approaches reveal single nucleotide polymorphisms under selection in goat breeds of North-East Mediterranean". BMC Genetics 10 1 (2009): 7-7.
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  80. ALMENDRA, C; SILVA, T; BEJAPEREIRA, A; FERREIRA, A; FERRAOBECK, L; SA, M; BRICKER, B; Luikart, G.. "“HOOF-Print¿? genotyping and haplotype inference discriminates among Brucella spp. isolates from a small spatial scale". Infection, Genetics and Evolution 9 1 (2009): 104-107.
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  81. Pariset, Lorraine; Cuteri, Antonella; Ligda, Christina; Ajmone-Marsan, Paolo; Valentini, Alessio; Consortium, Econogene. "Geographical patterning of sixteen goat breeds from Italy, Albania and Greece assessed by Single Nucleotide Polymorphisms". BMC Ecology 9 1 (2009): 20-20.
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  82. Delgado, Rodrigo; Fernández-Llario, Pedro; Azevedo, Marisa; Beja-Pereira, Albano; Santos, Pedro. "Paternity assessment in free-ranging wild boar (Sus scrofa) – Are littermates full-sibs?". Mammalian Biology - Zeitschrift für Säugetierkunde 73 3 (2008): 169-176.
    Published • 10.1016/j.mambio.2007.07.008
  83. Chen, S.Y.; Costa, V.; Azevedo, M.; Baig, M.; Malmakov, N.; Luikart, G.; Erhardt, G.; Beja-Pereira, A.. "Short Communication: New Alleles of the Bovine ¿-Casein Gene Revealed by Resequencing and Haplotype Inference Analysis". Journal of Dairy Science 91 9 (2008): 3682-3686.
    Published • 10.3168/jds.2008-1211
  84. Antao, T.; Lopes, A.; Lopes, R.J.; Beja-Pereira, A.; Luikart, G.. "LOSITAN: A workbench to detect molecular adaptation based on a Fst-outlier method". BMC Bioinformatics 9 (2008): http://www.scopus.com/inward/record.url?eid=2-s2.0-49649129741&partnerID=MN8TOARS.
    10.1186/1471-2105-9-323
  85. Peter, C.; Bruford, M.; Perez, T.; Dalamitra, S.; Hewitt, G.; Erhardt, G.. "Genetic diversity and subdivision of 57 European and Middle-Eastern sheep breeds". Animal Genetics 38 1 (2007): 37-44.
    Published • 10.1111/j.1365-2052.2007.01561.x
  86. Naderi, Saeid; Rezaei, Hamid-Reza; Taberlet, Pierre; Zundel, Stéphanie; Rafat, Seyed-Abbas; Naghash, Hamid-Reza; El-Barody, Mohamed A. A.; Ertugrul, Okan; Pompanon, François. "Large-Scale Mitochondrial DNA Analysis of the Domestic Goat Reveals Six Haplogroups with High Diversity". PLoS ONE 2 10 (2007): e1012-e1012.
    Published • 10.1371/journal.pone.0001012
  87. Antao, T.; Beja-Pereira, A.; Luikart, G.. "MODELER4SIMCOAL2: A user-friendly, extensible modeler of demography and linked loci for coalescent simulations". Bioinformatics 23 14 (2007): 1848-1850.
    Published • 10.1093/bioinformatics/btm243
  88. Beja-Pereira, A.; Caramelli, D.; Lalueza-Fox, C.; Vernesi, C.; Ferrand, N.; Casoli, A.; Goyache, F.; et al. "The origin of European cattle: Evidence from modern and ancient DNA". Proceedings of the National Academy of Sciences 103 21 (2006): 8113-8118.
    Published • 10.1073/pnas.0509210103
  89. Liu, Yi-Ping; Wu, Gui-Sheng; Yao, Yong-Gang; Miao, Yong-Wang; Luikart, Gordon; Baig, Mumtaz; Beja-Pereira, Albano; et al. "Multiple maternal origins of chickens: Out of the Asian jungles". Molecular Phylogenetics and Evolution 38 1 (2006): 12-19.
    Published • 10.1016/j.ympev.2005.09.014
  90. Canon, J.; Garcia, D.; Garcia-Atance, M. A.; Obexer-Ruff, G.; Lenstra, J. A.; Ajmone-Marsan, P.; Dunner, S.. "Geographical partitioning of goat diversity in Europe and the Middle East". Animal Genetics 37 4 (2006): 327-334.
    Published • 10.1111/j.1365-2052.2006.01461.x
  91. Pariset, L.; Cappuccio, I.; Marsan, P. Ajmone; Dunner, S.; Luikart, G.; England, P.R.; Obexer-Ruff, G.; et al. "Assessment of population structure by single nucleotide polymorphisms (SNPs) in goat breeds¿". Journal of Chromatography B 833 1 (2006): 117-120.
    Published • 10.1016/j.jchromb.2006.01.011
  92. Pariset, L.; Cappuccio, I.; Ajmone-Marsan, P.; Bruford, M.; Dunner, S.; Cortes, O.; Erhardt, G.; et al. "Characterization of 37 Breed-Specific Single-Nucleotide Polymorphisms in Sheep". Journal of Heredity 97 5 (2006): 531-534.
    Published • 10.1093/jhered/esl020
  93. Beja-Pereira, Albano. "Characterization of single nucleotide polymorphisms in sheep and their variation as evidence of selection". Animal Genetics 37 3 (2006): 290-292.
    Published • 10.1111/j.1365-2052.2006.01441.x
  94. Cappuccio, I.; Pariset, L.; Ajmone-Marsan, P.; Dunner, S.; Cortes, O.; Erhardt, G.; LÜHKEN, G.; et al. "Allele frequencies and diversity parameters of 27 single nucleotide polymorphisms within and across goat breeds". Molecular Ecology Notes 6 4 (2006): 992-997.
    Published • 10.1111/j.1471-8286.2006.01425.x
  95. Antao, T.; Beja-Pereira, A.; FONSECA, M. M.; HARRIS, D. J.. "BACA: a mitochondrial genome retriever, organizer and visualizer". Molecular Ecology Notes 7 2 (2006): 217-220.
    Published • 10.1111/j.1471-8286.2006.01658.x
  96. Royo, L. J.; Alvarez, I.; Beja-Pereira, A.; Molina, A.; Fernandez, I.; Jordana, J.; Gomez, E.; Gutierrez, J. P.; Goyache, F.. "The Origins of Iberian Horses Assessed via Mitochondrial DNA". Journal of Heredity 96 6 (2005): 663-669.
    Published • 10.1093/jhered/esi116
  97. Baig, M.; Beja-Pereira, A.; Mohammad, R.; Kulkarni, K.; Farah, S.; Luikart, G.; Baig, Mumtaz; et al. "Phylogeography and origin of Indian domestic cattle". Current Science 89 1 (2005): 38-40. http://www.scopus.com/inward/record.url?eid=2-s2.0-27944486159&partnerID=MN8TOARS.
    Published
  98. Beja-Pereira, A.. "African Origins of the Domestic Donkey". Science 304 5678 (2004): 1781-1781.
    Published • 10.1126/science.1096008
  99. Beja-Pereira, Albano; ZEYL, EVE; OURAGH, LAHOUSINE; NAGASH, HAMID; Ferrand, Nuno; Taberlet, Pierre; Luikart, Gordon. "Twenty polymorphic microsatellites in two of North Africa's most threatened ungulates: Gazella dorcas and Ammotragus lervia (Bovidae; Artiodactyla)". Molecular Ecology Notes 4 3 (2004): 452-455.
    Published • 10.1111/j.1471-8286.2004.00678.x
  100. Aranguren-Mendez, J.; Beja-Pereira, A.; Avellanet, R.; Dzama, K.; Jordana, J.. "Mitochondrial DNA variation and genetic relationships in Spanish donkey breeds (Equus asinus)". Journal of Animal Breeding and Genetics 121 5 (2004): 319-330.
    Published • 10.1111/j.1439-0388.2004.00464.x
  101. Beja-Pereira, A.; Luikart, G.; England, P.R.; Bradley, D.G.; Jann, O.C.; Bertorelle, G.; Chamberlain, A.T.; et al. "Erratum: Gene-culture coevolution between cattle milk protein genes and human lactase genes (Nature Genetics (2003) 35 (311-313))". Nature Genetics 36 1 (2004): http://www.scopus.com/inward/record.url?eid=2-s2.0-0347988055&partnerID=MN8TOARS.
    10.1038/ng0104-106b
  102. Beja-Pereira, A.. "Genetic Characterization of Southwestern European Bovine Breeds: A Historical and Biogeographical Reassessment With a Set of 16 Microsatellites". Journal of Heredity 94 3 (2003): 243-250.
    Published • 10.1093/jhered/esg055
  103. Jordana, J.; Alexandrino, P.; Beja-Pereira, A.; Bessa, I.; Canon, J.; Carretero, Y.; Dunner, S.; et al. "Genetic structure of eighteen local south European beef cattle breeds by comparative F-statistics analysis". Journal of Animal Breeding and Genetics 120 2 (2003): 73-87.
    Published • 10.1046/j.1439-0388.2003.00384.x
  104. Beja-Pereira, Albano; Luikart, Gordon; England, Phillip R; Bradley, Daniel G; Jann, Oliver C; Bertorelle, Giorgio; Chamberlain, Andrew T; et al. "Gene-culture coevolution between cattle milk protein genes and human lactase genes". Nature Genetics 35 4 (2003): 311-313.
    Published • 10.1038/ng1263
  105. Maudet, C.; Beja-Pereira, A.; Zeyl, E.; Nagash, H.; Kence, A.; ¿¿z¿¿t, D.; Biju-Duval, M.-P.; et al. "A standard set of polymorphic microsatellites for threatened mountain ungulates (Caprini, Artiodactyla)". Molecular Ecology Notes 4 1 (2003): 49-55.
    Published • 10.1046/j.1471-8286.2003.00563.x
  106. Beja-Pereira, A.; Erhardt, G.; Matos, C.; Gama, L.; Ferrand, N.. "Evidence for a geographical cline of casein haplotypes in Portuguese cattle breeds". Animal Genetics 33 4 (2002): 295-300.
    Published • 10.1046/j.1365-2052.2002.00871.x
  107. Beja-Pereira; Bento; Ferrand; Brenig. "Genetic polymorphism of the 17th exon at porcine RYR1 locus: a new variant in a local Portuguese pig breed demonstrated by SSCP analysis". Journal of Animal Breeding and Genetics 118 4 (2001): 271-274.
    Published • 10.1046/j.1439-0388.2001.00294.x
  108. Cañón, J.; Alexandrino, P.; Bessa, I.; Carleos, C.; Carretero, Y.; Dunner, S.; Ferran, N.; et al. "Genetic diversity measures of local European beef cattle breeds for conservation purposes". Genetics Selection Evolution 33 3 (2001): 311-332. http://www.scopus.com/inward/record.url?eid=2-s2.0-0034955749&partnerID=MN8TOARS.
Preprint
  1. Sofia Duarte-Coimbra; Giovanni Forcina; Lucía Pérez-Pardal; Albano Beja-Pereira. "First insights into nasal microbiome in wine tasters". 2023. https://doi.org/10.1101/2023.03.21.533426.
    10.1101/2023.03.21.533426

Other

Other output
  1. Phylogeny and distribution of Y-chromosomal haplotypes in domestic, ancient and wild goats. 2020. Nijman, I.J.; Rosen, B.D.; Zheng, Z.; Jiang, Y.; Cumer, T.; Daly, K.G.; Bâlteanu, V.A.; et al. http://www.scopus.com/inward/record.url?eid=2-s2.0-85098899210&partnerID=MN8TOARS.
    10.1101/2020.02.17.952051
  2. Characterization of the oral microbiome of medically controlled type-2 diabetes patients. 2020. Almeida-Santos, A.; Martins-Mendes, D.; Gayà-Vidal, M.; Pérez-Pardal, L.; Beja-Pereira, A.. http://www.scopus.com/inward/record.url?eid=2-s2.0-85098911032&partnerID=MN8TOARS.
    10.1101/2020.04.07.031070
  3. Legacies of domestication, trade and herder mobility shape extant male zebu cattle diversity in South Asia and Africa. Scientific Reports. 2018. Lucía Pérez Pardal; Alejandro Sánchez-Gracia; Isabel Alvarez; Amadou Traore; Jose Bento Sterman Ferraz; Ivan Fernandez; Vânia Costa; et al. http://www.scopus.com/inward/record.url?eid=2-s2.0-85058913255&partnerID=MN8TOARS.
    10.60692/6rz4p-dyd17
  4. Genetic diversity of Plasmodium falciparum and distribution of drug resistance haplotypes in Yemen. Malaria Journal. 2013. Salama Al-Hamidhi; Mohammed A.K. Mahdy; Zainab Al-Hashami; Hissa Al-Farsi; Abdulsalam Al-Mekhlafi; Mohamed A. Idris; Beja-Pereira A.; et al.
    10.60692/y5vvp-g1w43
Activities

Supervision

Thesis Title
Role
Degree Subject (Type)
Institution / Organization
2023 - 2023 Genomic and metagenomic characterization of Nguni cattle in Namibia
Supervisor
Biodiversidade, Genética e Evolução (PhD)
Universidade do Porto Faculdade de Ciências, Portugal
2021 - 2021 Evaluation of the impact of the oral microbiome on the sensory perception of healthy plant-based products: The genotype and microbiome as an influencer of taste perception of healthy vegetables.
Supervisor
Ciências Agrárias (PhD)
Universidade do Porto Faculdade de Ciências, Portugal
2021 - 2021 Characterization of tongue dorsum microbiome from wine tasters
Supervisor
Ciências do Consumo e Nutrição (Master)
Universidade do Porto Faculdade de Ciências, Portugal
2020 - 2020 Desenvolvimento de ferramenta de diagnóstico e benchmarking aplicada a explorações intensivas de leite
Supervisor
Engenharia Agronómica (Master)
Universidade do Porto Faculdade de Ciências, Portugal
2018 - 2018 Genetic Characterization of Cattle and Goats in Cabo Verde
Supervisor
Biodiversidade, Genética e Evolução (PhD)
Universidade do Porto Faculdade de Ciências, Portugal
2015 - 2015 Origin, Diversity and Selection Patterns of South American Chickens
Supervisor
Biodiversidade, Genética e Evolução (PhD)
Universidade do Porto Faculdade de Ciências, Portugal
2013 - 2013 Assessing phylogeographic traits and distribution patterns of Amanita ponderosa (Malençon & R. Hein) in Iberian Peninsula
Supervisor
Biodiversidade, Genética e Evolução (Master)
Universidade do Porto Faculdade de Ciências, Portugal
2013 - 2013 Population Genetics of the Tibetan wild ass (Equus kiang) and Evolution of the Equids
Supervisor
Biodiversidade, Genética e Evolução (Master)
Universidade do Porto Faculdade de Ciências, Portugal

Association member

Society Organization name Role
2008/03 - Current Society for Molecular Biology and Evolution
2003/01 - Current International Society for Animal Genetics
2003/01 - Current American Genetics Association
2003/01 - 2005/01 American Society of Human Genetics

Conference scientific committee

Conference name Conference host
2019/09/01 - 2019/09/05 2nd International Wild Equid Conference, Prague Czek University of Life Sciences, Prague
2019/04/27 - 2019/04/29 5th International MGIBR Workshop University of Tlemcen and The National Institute of Agronomic Research of Algeria (INRAA)
2016/02/23 - 2016/02/24 Regional Conference for Animal Genetic Resources Conservation Oman Plant & Animal Genetic Resources Center, The Research Council
2015/06/26 - 2015/06/27 O mundo animal na romanização da Peninsula Ibérica Laboratório de Arqueociências da Direção Geral do Património Cultural – Secretaria de Estado da Cultura

Evaluation committee

Activity description
Role
Institution / Organization Funding entity
2017 - 2018 Member of the evaluation panel for the Horizon 2020 call H2020-CP-STAGE1
Evaluator
European Commission, Belgium
2011 - 2012 Member of the evaluation panel for Animal and Veterinary Sciences Panel for the individual advancing fellowship and grant applications (Ph D. and Postdoctoral)
Evaluator
Fundação para a Ciência e a Tecnologia, Portugal
2011 - 2011 Member of the evaluation panel for the program Proyectos Cero on Threatened Species
Member
Fundación General CSIC, Spain

Journal scientific committee

Journal title (ISSN) Publisher
2020/04/01 - Current Life ( 2075-1729) MDPI
2015 - Current BMC Veterinary Research (1746-6148) Springer (Biomed Central Ltd.)
2012 - Current Frontiers in Genetics (1664-8021) Frontiers Media SA
2007/10/28 - 2013 Molecular Ecology Resources (1755-0998) Wiley (Blackwell Publishing)
Distinctions

Other distinction

2011 Alfred Töpfer International Prize for Agriculture, Forestry and Nature Protection
Alfred Töpfer foundation, Germany, Portugal
2004 Bursary to attend the African Genome Iniciative Conference, Cairo, Egypt
Human Sciences Research Council, South Africa, Portugal
2001 Justus-von-Liebig Forschungsstipendien
Alfred Toepfer Stiftung/ Fakultät der Christian-Albrechts-Universität zu Kiel, Germany, Portugal
2000 Young Researcher-Bursary to attend the 27th ISAG conference
International Society for Animal Genetics (ISAG), Portugal
1997 Prémio APEZ/ACRAL para melhor estágio curricular em zooténia
Associação Portuguesa de Engenheiros Zootécnicos, Portugal