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Jorge Manuel de Sousa Basto Vieira completed the PhD in Ciências Biomédicas in 1997 at the Universidade do Porto Instituto de Ciências Biomédicas Abel Salazar. He is Principal Investigator at the Universidade do Porto - Instituto de Biologia Molecular e Celular and i3S - Instituto de Investigação e Inovação em Saúde. As of February 2022, his 95 scientific contributions indexed in Scopus hold 1441 citations from 992 different documents (h-index = 22). He is an expert in Population Genetics, Genomics, Transcriptomics, and Bioinformatics. He has developed several bioinformatic tools for efficient retrieval and processing of large amounts of sequence data, large scale analysis of positively selected amino acid sites, web application tools to compare protein interactions, and Docker images for bioinformatics software.
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Identification

Personal identification

Full name
Jorge Manuel de Sousa Basto Vieira

Citation names

  • Vieira, Jorge
  • Vieira J
  • Vieira JB
  • Vieira, J

Author identifiers

Ciência ID
4115-3270-5BE8
ORCID iD
0000-0001-7032-5220
Scopus Author Id
7202312456

Email addresses

  • jbvieira@ibmc.up.pt (Professional)

Telephones

Telephone
  • 226074933 (Professional)

Addresses

  • Rua Alfredo Allen 208, 4200-135, Porto, Porto, Portugal (Professional)

Websites

Knowledge fields

  • Natural sciences - Biological Sciences - Evolutionary Biology

Languages

Language Speaking Reading Writing Listening Peer-review
Portuguese (Mother tongue)
English Advanced (C1) Advanced (C1) Advanced (C1) Advanced (C1) Advanced (C1)
Education
Degree Classification
1994 - 1997
Concluded
 Ciências Biomédicas (Doutoramento)
Universidade do Porto Instituto de Ciências Biomédicas Abel Salazar, Portugal
"Genome rearrangements in the Drosophila genome " (THESIS/DISSERTATION)
 Aproved with distinction
1992 - 1994
Concluded
 Ecologia Aplicada (Mestrado)
Universidade do Porto Faculdade de Ciências, Portugal
"The use of genetic markers on the characterization and certification of domestic and wild rabbit (Oryctolagus cuniculus) populations " (THESIS/DISSERTATION)
 Unanimous classification of very good
1987 - 1991
Concluded
 Biologia (Licenciatura)
Universidade do Porto Faculdade de Ciências, Portugal
 14
Affiliation

Science

Category
Host institution 		Employer
2003/01/01 - Current Principal Investigator (Research) Universidade do Porto Instituto de Biologia Molecular e Celular, Portugal
Universidade do Porto Instituto de Biologia Molecular e Celular, Portugal
1998/01/01 - 2000/12/01 Postdoc (Research) Fundação para a Ciência e a Tecnologia, Portugal
The University of Edinburgh, United Kingdom
Projects

Grant

Designation Funders
2023/01/01 - 2025/12/31 TARGET: Translating Acomys Regenerative Capacity
Santa Casa
Researcher
Universidade do Porto Instituto de Investigação e Inovação em Saúde, Portugal
 Santa Casa da Misericórdia de Lisboa
Ongoing
2023/02/01 - 2024/07/31 Finding and validating the molecular map that enables axon regeneration in mammals
2022.06613.PTDC
Researcher
Universidade do Porto Instituto de Investigação e Inovação em Saúde, Portugal
 Fundação para a Ciência e a Tecnologia
Ongoing
2018 - 2020 Biodata.pt - Infraestrutura Portuguesa de Dados Biológicos (candidatura 022231 – Portugal 2020)
candidatura 022231 – Portugal 2020
 Fundação para a Ciência e a Tecnologia
2016 - 2019 Porto Neurosciences and Neurologic Disease Research Initiative at i3S
Norte-01-0145-FEDER-00008
 Comissao de Coordenacao e Desenvolvimento Regional do Norte
2015 - 2018 European Drosophila Population Genomics Network (DrosEU). ESEB Special Topic Networks
ESEB_001
 European Society for Evolutionary Biology
2014 - 2015 Evolution of eye and head size and shape between Drosophila novamexicana and Drosophila americana
VW 85 983
 VolkswagenStiftung
2013/05/01 - 2015 Co-evolution of the S-RNase and multiple SFBB genes in Pyrinae gametophytic self-incompatibility
info:eu-repo/grantAgreement/FCT/COMPETE/130383/PT
 Fundação para a Ciência e a Tecnologia
2010/06/01 - 2013 Can polymorphism in the same set of genes explain within-species variation in life-history traits in divergent species?
info:eu-repo/grantAgreement/FCT/5876-PPCDTI/99933/PT
Principal investigator
Fundação para a Ciência e a Tecnologia
2010 - 2013 RNase gametophytic self-incompatibility evolution: characterization of the S-RNase gene in Fabaceae, Malvaceae, Rhamnaceae and Rubiaceae
PTDC/BIA-BEC/100616/2008
 Fundação para a Ciência e a Tecnologia
2008/06/01 - 2011 THE GENETICS OF CD8+ T LYMPHOCYTE HOMEOSTASIS: implications in the clinical expression of Hereditary Hemochromatosis
info:eu-repo/grantAgreement/FCT/5876-PPCDTI/67868/PT
 Fundação para a Ciência e a Tecnologia
2008/04/01 - 2011 The evolution of ecologically relevant genes
info:eu-repo/grantAgreement/FCT/5876-PPCDTI/66765/PT
Principal investigator
Fundação para a Ciência e a Tecnologia
2008 - 2011 ILP-Web-Service:Um Serviço Web baseado num Sistema de Indução de Programas em Lógica
PTDC/EIA/70841/2006
Fundação para a Ciência e a Tecnologia
2005/04/01 - 2008 Determining the rate of adaptive evolution in Drosophila: the X/4 fusion of D. americana
info:eu-repo/grantAgreement/FCT/POCI/59399/PT
Principal investigator
Fundação para a Ciência e a Tecnologia
2005/04/01 - 2008 Gametophytic self-incompatibility: a model system to study molecular co-evolution
info:eu-repo/grantAgreement/FCT/POCI/59887/PT
 Fundação para a Ciência e a Tecnologia
2003/10/01 - 2007 Gametophytic self-incompatibility: Molecular population genetics and evolutionary analyses of Prunus spinosa (Rosaceae)
info:eu-repo/grantAgreement/FCT/POCI/44800/PT
 Universidade do Algarve Faculdade de Ciências e Tecnologia
2002/04/01 - 2005 Identification and Characterization of the Regulatory Elements of WINGLESS, the Drosophila homologue of the proto-oncogene Wnt-1.
info:eu-repo/grantAgreement/FCT/POCI/37402/PT
 Universidade do Algarve Faculdade de Ciências e Tecnologia
2002/01/01 - 2005 Molecular evolution of behavioural genes in the virilis group of Drosophila
info:eu-repo/grantAgreement/FCT/POCI/37421/PT
Principal investigator
Universidade do Algarve Faculdade de Ciências e Tecnologia
2002 - 2005 Genetic analysis of complex co-evolved traits
RTN2-2001-00049
Principal investigator
European Commission
2004 - 2004 The development of molecular markers along the D. virilis X chromosome: applications in population genetics and molecular evolution
2004-0001
Principal investigator
Universidade do Porto

Contract

Designation Funders
2011/01/01 - 2012/12/31 Projecto Estratégico - LA 2 - 2011-2012
PEst-C/SAU/LA0002/2011
Universidade do Porto Instituto de Biologia Molecular e Celular, Portugal

Instituto Nacional de Engenharia Biomédica, Portugal
Fundação para a Ciência e a Tecnologia
Concluded
2009/04/01 - 2012/09/30 MODIFIERS OF EXPRESSION OF HEMOCHROMATOSIS: looking for new markers of disease prognosis
PIC/IC/82785/2007
Hospital Geral de Santo António SA, Portugal

Universidade do Porto Instituto de Biologia Molecular e Celular, Portugal

European Molecular Biology Laboratory, Germany
Fundação para a Ciência e a Tecnologia
Concluded
2008/04/01 - 2011/09/30 A evolução de genes ecologicamente relevantes
PTDC/BIA-BDE/66765/2006
Universidade do Porto Instituto de Biologia Molecular e Celular, Portugal
 Fundação para a Ciência e a Tecnologia
Concluded
Outputs

Publications

Book
  1. Vázquez, N.; Rocha, S.; López-Fernández, H.; Torres, A.; Camacho, R.; Fdez-Riverola, F.; Vieira, J.; Vieira, C.P.; Reboiro-Jato, M.. EvoPPI: A web application to compare protein-protein interactions (PPIs) from different databases and species. 2019.
    10.1007/978-3-319-98702-6_18
  2. López-Fernández, H.; Duque, P.; Henriques, S.; Vázquez, N.; Fdez-Riverola, F.; Vieira, C.P.; Reboiro-Jato, M.; Vieira, J.. A bioinformatics protocol for quickly creating large-scale phylogenetic trees. 2019.
    10.1007/978-3-319-98702-6_11
  3. Vázquez, N.; Vieira, C.P.; Amorim, B.S.R.; Torres, A.; López-Fernández, H.; Fdez-Riverola, F.; Sousa, J.L.R.; Reboiro-Jato, M.; Vieira, J.. Automated collection and sharing of adaptive amino acid changes data. 2017.
    10.1007/978-3-319-60816-7_3
  4. Loureiro, T.; Camacho, R.; Vieira, J.; Fonseca, N.A.. Boosting the Detection of Transposable Elements Using Machine Learning. 2013.
    10.1007/978-3-319-00578-2_12
  5. Reboiro-Jato, D.; Reboiro-Jato, M.; Fdez-Riverola, F.; Fonseca, N.A.; Vieira, J.. On the development of a pipeline for the automatic detection of positively selected sites. 2012.
    10.1007/978-3-642-28839-5_26
  6. Fonseca, N.A.; Costa, V.S.; Camacho, R.; Vieira, C.; Vieira, J.. Partitional clustering of protein sequences - An inductive logic programming approach. 2009.
    10.1007/978-3-642-02481-8_152
Book chapter
  1. Reboiro-Jato, Miguel; Vieira, Jorge; Rocha, Sara; Sousa, André D.; López-Fernández, Hugo; Vieira, Cristina P.. "EvoPPI 2: A Web and Local Platform for the Comparison of Protein–Protein Interaction Data from Multiple Sources from the Same and Distinct Species". In Practical Applications of Computational Biology and Bioinformatics, 16th International Conference (PACBB 2022), 101-110. Springer International Publishing, 2022.
    10.1007/978-3-031-17024-9_10
  2. López-Fernández, Hugo; Ferreira, Pedro; Reboiro-Jato, Miguel; Vieira, Cristina P.; Vieira, Jorge. "The pegi3s Bioinformatics Docker Images Project". In Practical Applications of Computational Biology & Bioinformatics, 15th International Conference (PACBB 2021), 31-40. Cham, Switzerland: Springer International Publishing, 2021.
    Published • 10.1007/978-3-030-86258-9_4
  3. López-Fernández, Hugo; Vieira, Cristina P.; Fdez-Riverola, Florentino; Reboiro-Jato, Miguel; Vieira, Jorge. "Inferences on Mycobacterium Leprae Host Immune Response Escape and Antibiotic Resistance Using Genomic Data and GenomeFastScreen". In Practical Applications of Computational Biology & Bioinformatics, 14th International Conference (PACBB 2020), 42-50. Springer International Publishing, 2020.
    10.1007/978-3-030-54568-0_5
  4. López-Fernández, Hugo; Duque, Pedro; Vázquez, Noé; Fdez-Riverola, Florentino; Reboiro-Jato, Miguel; Vieira, Cristina P.; Vieira, Jorge. "Inferring Positive Selection in Large Viral Datasets". In Practical Applications of Computational Biology and Bioinformatics, 13th International Conference, 61-69. Springer International Publishing, 2019.
    10.1007/978-3-030-23873-5_8
Conference abstract
  1. Ferreira, P; López-Fernández, H; Duque, P; Vieira, C. P; Fdez-Riverola, F; Reboiro-Jato, M; Vieira, J. "Positively selected sites (PSS) found in Coronaviridae species using Auto-PSS-Genome". Paper presented in II International Meeting of the Portuguese Society of Genetics (IMPSG 2021), Vila Real, 2021.
    Published
  2. Sousa, André; Sousa e Silva, Rita; Catarina Vandervoordt; Vieira, Jorge; Cristina P. Vieira. "Drosophila as a SCA3 model: inferences on the Josephin domain role". Paper presented in II INTERNATIONAL MEETING OF THE PORTUGUESE SOCIETY OF GENETICS, Vila Real, 2021.
    Published
  3. Sousa e Silva, Rita; Sousa, André; Catarina Vandervoordt; Vieira, Jorge; Cristina P. Vieira. "The role of the Josephin domain in the ATXN3 protein interactions". Paper presented in IJUP2021 - 14º Encontro de Investigação Jovem da Universidade do Porto, Porto, 2021.
    Published
Conference poster
  1. Ferreira, P; Soares, R; López-Fernández, H; Vieira, C. P; Vieira, J. "Inferring positively selected amino acid sites (PSS) in Coronavirus species using Auto-PSS-Genome". Paper presented in III Encontro Doutoramento em Ciências Biomédicas do ICBAS, 2023.
  2. Pissarra, João; Roque, Jéssica; Brito, Ângela; Mota, Rita; Oliveira, Paulo; Vieira, Jorge; Vieira, Cristina; et al. Corresponding author: Pissarra, João. "Green rehabilitation system for burned soils based on the inoculation of native cyanobacteria and microalgae". Paper presented in 17th International Symposium on Phototrophic Prokaryotes, 2022.
  3. Miguel Reboiro-Jato; Jorge Vieira; Sara Rocha; André D. Sousa; Hugo López-Fernández; Cristina P. Vieira. "EvoPPI 2: an updated version of a powerful Protein-Protein Interaction database aggregator and analysis platform.". Paper presented in V CINBIO Annual Meeting 2022, 2022.
  4. Brito, Ângela; Martins, Teresa; Vieira, Jorge; Vieira, Cristina P; Zhu, Tao; Ramos, Vitor; Lu, Xuefeng; et al. "An integrated genomic mining and metabolomic approach to uncover the biosynthetic potential of the marine cyanobacterium Hyella patelloides". Paper presented in 11th European Workshop on the Biology of Cyanobacteria - Online Event, 2020.
  5. Brito, Ângela; Vieira, Jorge; Vieira, Cristina P; Zhu, Tao; Leão, Pedro; Ramos, Vitor; Martins, Teresa; et al. "Hyella patelloides, a marine cyanobacterium with a unique biosynthetic potential". Paper presented in XVI International Symposium on Marine Natural Products/XI European Conference on Marine Natural Products, 2019.
  6. Vieira, Jorge; FERREIRA P.; López-Fernández, H.; Duque, P.; Vieira CP; Reboiro-Jato M; Fdez-Riverola F; Vieira, J.. "Bioinformatics Docker Images". Paper presented in VIII Bioinformatic Open days, University of Braga, Braga, Portugal, 2019.
  7. Reis, M.; Vieira CP; LATA R; SALAMANCA-DÌAZ D; Vieira, Jorge; POSNIEN N. "Evolution of eye size and head morphology between Drosophila americana and D. novamexicana". Paper presented in II Joint Congress on Evolutionary Biology 2018. Montpellier, France, 2018.
  8. López-Fernández H; Reboiro-Jato M; VÁZQUEZ M; Duque, P.; Fdez-Riverola F; Vieira CP; Vieira, Jorge. "Developing a standalone toolbox for processing FASTA files". Paper presented in Portuguese Society of Genetics Annual meeting 2018, Porto, Portugal, 2018.
  9. Brito, Ângela; Leão, Pedro; Martins, Teresa; Ramos, Vitor; Vieira, Jorge; Vieira, Cristina P.; Vasconcelos, Vitor; Gugger, Muriel; Tamagnini, Paula. "Discovery of natural products from cyanobacteria isolated from the Portuguese coast". Paper presented in Young Researchers in Life Sciences (YRLS); Paris, France, 2018.
  10. Costa, Inês Maria; Rocha, S.; López-Fernández, H.; Guterres de Carvalho, I.; Macedo-Ribeiro, S.; Camacho, R.; Vieira, J; Vieira C. P.. "Comparative evolutionary analysis of the protein-protein interactions of the wild-type polyQ proteins ataxin-2 and androgen receptor, associated with neurodegenerative disorders in Homo sapiens.". Paper presented in IJUP¿18 ¿ Encontro de Investigação Jovem da Universidade do Porto, 2018.
  11. Brito, Ângela; Leão, Pedro; Ramos, Vitor; Vieira, Jorge; Vieira, Cristina P; Vasconcelos, Vitor; Gugger, Muriel; Tamagnini, Paula. "Genomic and metabolomic characterization of a new species of a marine cyanobacterium Hyella patelloides". Paper presented in 10th European Conference on Marine Natural Products; Kolymbari, Crete, Greece, 2017.
  12. Rocha, S.; COSTA I.; GUTERRES DE CARVALHO I; Camacho, R.; Vieira, Jorge; Vieira CP. "Evolution of the polyglutamine (polyQ) wild-type (non-expanded form) protein networks, associated to human neurodegenerative diseases". Paper presented in ESEB 2017. Groningen, Netherlands, 2017.
  13. Reis, M.; Vieira CP; POSNIEN N; Vieira, Jorge. "Ectopic recombination between DAIBAM elements is the prevalent mode generating inversions in the virilis phylad". Paper presented in ESEB 2017. Groningen, Netherlands, 2017.
  14. Vieira CP; Vieira, Jorge; Aguiar B; Pratas MI; Nunes V; TEIXEIRA V.; Iezzoni A; van Nocker S. "Malus domestica gametophytic self-incompatibility system: players and features of the pollen component determining specificity recognition". Paper presented in ESEB 2017. Groningen, Netherlands, 2017.
  15. Teixeira, Vanessa; Vieira, Jorge; Vieira, Cristina P.. "Evolution of the Gametophytic self-incompatibility system in Rosidae". Paper presented in 10º Encontro de Investigação Júnior da Universidade do Porto (IJUP) (10th Meeting of Junior Research from University of Porto), 2017.
  16. Vieira, Jorge; Aguiar B; PRATAS I; NUNES V.; IEZONNI A; van Nocker S; Vieira CP. "The players of the "collaborative non-self recognition" Malus self-incompatibility system". Paper presented in 8th International Rosaceae Genomics Conference (RGC8), Angers, France, 2016.
  17. SOUSA J.; BASTOS HN; OSÓRIO NS; VEIGA MI; MACHADO H.; CARDOSO F.; GAIFEM J; et al. "Host and Mycobacterium tuberculosis determinants of immune cells activation.". Paper presented in XLII Reunião Anual da Sociedade Portuguesa de Imunologia, Oeiras, Portugal, 2016.
  18. Brito, Ângela; Mota, Rita; Ramos, Vitor; Lima, Steeve; Santos, Arlete; Vieira, Jorge; Vieira, Cristina P; Vasconcelos, Vitor; Tamagnini, Paula. "Isolation of cyanobacterial strains from the Portuguese Atlantic coast disclosures novel diversity". Paper presented in 15th International Symposium on Phototrophic Prokaryotes; Tübingen, Germany, 2015.
  19. Reis, M.; Vieira CP; LATA R; POSNIEN N.; Vieira, Jorge. "Evolution of eye size and head morphology between Drosophila americana and D. novamexicana". Paper presented in SMBE, Vienna, Autria, 2015.
  20. Vieira, Jorge; Aguiar B; PRATAS I.; NUNES V.; Vieira CP. "The players of the "collaborative non-self recognition" Malus self-incompatibility system". Paper presented in SMBE, Vienna, Autria, 2015.
  21. Vieira, Jorge; Aguiar B; CUNHA AE.; TEIXEIRA V.; Vieira CP. "Fabaceae Gametophytic self-incompatibility is not determined by Rosaceae, Solanaceae, and Plantaginaceae S-RNase lineage genes". Paper presented in SMBE, Vienna, Autria, 2015.
  22. Vieira, Jorge; Aguiar, Bruno; Cunha, Ana E; Teixeira, Vanessa; Vieira, Cristina P.. "No evidence for S-RNase lineage genes determining Fabaceae Gametophytic self-incompatibility". Paper presented in Annual Meeting of the Society for Molecular Biology and Evolution in Vienna, Austria, 2015.
  23. Reis, M.; VALER FB; Vieira CP; Vieira, Jorge. "Drosophila americana diapausing females show features typical of young flies.". Paper presented in 16th Portugaliae Genetica, Porto, Portugal, 2014.
  24. Aguiar B; Vieira, Jorge; CUNHA AE.; FONSECA NA.; Iezzoni A; van Nocker S; Vieira CP. "Genes from distinct lineages determine gametophytic self-incompatibility in Malus and Prunus.". Paper presented in 16th Portugaliae Genetica, Porto, Portugal, 2014.
  25. Aguiar B; Vieira, Jorge; CUNHA AE.; Vieira CP. "Pyrinae and Asteridae S-lineage genes in Fabaceae species: is gametophytic self incompatibility S-RNase based in Cytisus striatus?". Paper presented in 16th Portugaliae Genetica, Porto, Portugal, 2014.
  26. Vieira, Jorge; Reis, M.; Páscoa, I.; ROCHA I.; Aguiar B; Vieira CP. "Polymorphism at Frost gene explains developmental time variability in Drosophila americana". Paper presented in Congress of the European Society for Evolutionary Biology, Lisbon, Portugal, 2013.
  27. Morales-Hojas, R.; Sillero, N.; Reis, M.; Vieira CP; Vieira, Jorge. "Ecological niche evolution, phylogeography and thermal adaptation studies in Drosophila americana suggest it is a plastic species.". Paper presented in Congress of the European Society for Evolutionary Biology, Lisbon, 2013.
  28. Aguiar B; Vieira, Jorge; CUNHA AE; FONSECA NA.; Reboiro-Jato, D.; Reboiro-Jato, M.; Fdez-Riverola, F.; Raspé, O.; Vieira CP. "The inhibition of the S-RNase cytoxicity in Rosaceae: the Prunus 'one Spollen gene' model and the Pyrinae ‘non-self recognition by multiple Spollen factors’ model". Paper presented in XXXVI Jornadas Portuguesas de Genética, Porto, 2013.
  29. Reis, M.; Morales-Hojas, R.; Vieira CP; Vieira, Jorge. "The evolution of cold tolerance in Drosophila: from phylogenetics to gene expression". Paper presented in XXXVI Jornadas Portuguesas de Genética, Porto, 2013.
  30. Reboiro-Jato, D.; Reboiro-Jato, M.; Fdez-Riverola, F.; Vieira CP; FONSECA NA.; Vieira, Jorge. "ADOPS, a pipeline for phylogenetic analyses and detection of positively selected sites.". Paper presented in Trends In Biodiversity and Evolution- TIBE 2012, CIBIO, Vairão, 2012.
  31. Aguiar B; Vieira, Jorge; CUNHA A.; FONSECA N.; Vieira CP. "A working model for GSI evolution in Rosaceae". Paper presented in Trends In Biodiversity and Evolution- TIBE 2012, CIBIO, Vairão, 2012.
  32. Aguiar B; Vieira, Jorge; Fonseca, N.A.; Raspé, O.; Vieira CP. "The inhibition of the S-RNase cytoxicity in Rosaceae: the Prunus 'one S-pollen gene' model and the Pyrinae 'non-self recognition by multiple S-pollen factors' model". Paper presented in Society for Molecular Biology and Evolution, SMBE 2012, Dublin, 2012.
  33. Morales-Hojas, R.; Reis, M.; Vieira CP; Vieira, Jorge. "The evolution of cold tolerance in Drosophila: from phylogenetics to gene expression". Paper presented in Society for Molecular Biology and Evolution, SMBE 2012, Dublin., 2012.
  34. Reis, M.; ARAÚJO AR.; Aguiar B; Rocha, H.; Vieira CP; Vieira, Jorge. "Amino acid polymorphism at Drosophila methuselah-like genes is associated with lifespan differences.". Paper presented in Society for Molecular Biology and Evolution, SMBE 2012, Dublin., 2012.
  35. Aguiar B; Vieira, Jorge; CUNHA A.; FONSECA N.; Vieira CP. "The fate of S-RNase gene duplications in Rosaceae.". Paper presented in Society for Molecular Biology and Evolution, SMBE 2012, Dublin., 2012.
  36. Rocha, H.; Reis, M.; Vieira CP; Vieira, Jorge. "Assessing natural variation in Drosophila longevity.". Paper presented in Trends In Biodiversity and Evolution-TIBE 2011; CIBIO- Vairão, 2011.
  37. Reis, M.; Vieira CP; Morales-Hojas, R.; Aguiar B; Rocha, H.; Schlötterer, C.; Vieira, Jorge. "The genetic basis of cold tolerance within and between Drosophila species.". Paper presented in Trends In Biodiversity and Evolution-TIBE 2011; CIBIO- Vairão, 2011.
  38. Aguiar B; Vieira, Jorge; Vieira CP. "The fate of S-RNase gene duplications across 120 million years of evolution.". Paper presented in Trends In Biodiversity and Evolution-TIBE 2011; CIBIO- Vairão, 2011.
  39. Aguiar B; Vieira, Jorge; FONSECA NA.; Raspé, O.; Vieira CP. "How the gamethophytic self-incompatibility system works with multiple pollen genes.". Paper presented in 13th Congress of the European Society for Evolutionary Biology, Tübingen, Germany, 2011.
  40. Reis, M.; ARAÚJO AR.; Aguiar B; Rocha, H.; Vieira CP; Vieira, Jorge. "Amino acid polymorphism at Drosophila methuselah-like genes is associated with lifespan differences". Paper presented in 13th Congress of the European Society for Evolutionary Biology, Tubingen, 2011.
  41. Rocha, H.; Reis, M.; Vieira CP; Vieira, Jorge. "Drosophila lifespan evolution". Paper presented in XXXVI Jornadas Portuguesas de Genética, Coimbra, 2011.
  42. Aguiar B; Vieira, Jorge; Vieira CP. "The fate of an S-RNase duplicated genes in Medicago truncatula.". Paper presented in XXXVI Jornadas Portuguesas de Genética, Coimbra, 2011.
  43. Reis M.; Araújo AR.; Aguiar B; Rocha H.; Vieira C. P.; Vieira J. "Mathuselah-like variability explains lifespan differences in divergent insect species". Paper presented in XXXVI Jornadas Portuguesas de Genética, Coimbra, 2011.
  44. Morales-Hojas, R.; Vieira, Jorge. "Diversification patterns in the Drosophila subgenus.". Paper presented in 13th Congress of the European Society for Evolutionary Biology, Tübingen, Germany, 2010.
  45. Aguiar B; Vieira, Jorge; FONSECA NA.; Raspé, O.; Vieira CP. "Multiple pollen gametophytic self-incompatibility genes in Sorbus aucuparia (Maloideae): evidence and implications.". Paper presented in International Congress on Sexual Plant Reproduction, Bristol, 2010.
  46. Morales-Hojas, R.; Reis, M.; Vieira CP; Vieira, Jorge. "Is the virilis-repleta radiation of Drosophila associated with an increase in the speciation rate?". Paper presented in Annual Meeting of the Society for Molecular Biology and Evolution. Lyon, 2010.
  47. Reis, M.; Vieira CP; Morales-Hojas, R.; Aguiar B; Schlötterer, C.; Vieira, Jorge. "The molecular basis of cold resistance is partially conserved in the distantly related Drosophila species". Paper presented in SMBE 2010. Lyon, 2010.
  48. Reis, M.; Vieira CP; Morales-Hojas, R.; Aguiar B; Schlötterer, C.; Vieira, Jorge. "The molecular basis of cold resistance variation is partially conserved in the distantly related species D. melanogaster and D. americana". Paper presented in . XXXV Jornadas Portuguesas de Genética, Braga, 2010.
  49. Aguiar B; Vieira, Jorge; FONSECA NA.; Raspé, O.; Vieira CP. "Models of pollen rejection for the inhibition of the S-RNase cytoxicity in Prunus and Maloideae.". Paper presented in XXXV Jornadas Portuguesas de Genética, Braga, 2010.
  50. COSTA D.; Vieira CP; Vieira, Jorge; FONSECA NA.. "Identifying exclusive patterns in unaligned sets of sequences.". Paper presented in 13th Portugaliae Genetica. Porto .Portugal, 2010.
  51. MORALES-HOJAS R,; Vieira CP; Reis, M.; Vieira, Jorge. "Comparative analysis of five immunity-related genes reveals different levels of adaptive evolution in the virilis and melanogaster. groups of Drosophila.". Paper presented in XII Congress of the European Society of Evolutionary Biology, Torino, 2009.
  52. FONSECA NA.; Vieira CP; HOLLAND PW; Vieira, Jorge. "Chemical evolution of ANTP and PRD homeobox genes". Paper presented in SMBE 2008, Barcelona, Spain, 2008.
  53. Vieira, Jorge; Vieira CP. "Recombination at Prunus S-locus region SLFL1 gene". Paper presented in SMBE 2008, Barcelona, Spain, 2008.
  54. Morales-Hojas, R.; Reis, M.; Vieira CP; Vieira, Jorge. "The fixation of a bilbo-like non-LTR retroelement in the virilis phylad of the Drosophila virilis group of species.". Paper presented in SMBE 2008, Barcelona, Spain, 2008.
  55. Vieira, Jorge; Vieira CP. "Patterns of self-incompatibility in Prunus spinosa (Rosaceae).". Paper presented in 11th Congress of the European Society of Evolutionary Biology, Uppsala, 2007.
  56. Morales-Hojas, R.; Vieira CP; Vieira, Jorge. "A multilocus approach to the molecular systematics of the D. virilis group of species.". Paper presented in 11th Congress of the European Society of Evolutionary Biology, Uppsala, 2007.
  57. SANTOS RAM; NUNES MDS; FERREIRA SM; Vieira, Jorge; Vieira CP. "Variability patterns at the gametophytic self-incompatibility pollen gene in Prunus spinosa (Rosaceae): how they fit the theoretical predictions.". Paper presented in XVth National Congress of Biochemistry, Aveiro, Portugal, 2006.
  58. Vieira, C.P.; Vieira, Jorge. "Choromosomal evolution in Drosophila americana: the role of selectio, population stucture and genetic drift". Paper presented in ESEBX, Kraków, 2005.
  59. NUNES M. D; Vieira, Jorge; SANTOS RA.; Vieira, C.P.. "Self-incompatibility in an allotetraploid Prunus spinosa (Rosaceae) natural population: characterization of the S-locus (s-RNase and SFB genes).". Paper presented in ESEBX, Kraków, 2005.
  60. Vieira, C.P.; Charlesworth, D.; Vieira, Jorge. "What is the role of recombination in the generation of new S-locus specificities?". Paper presented in ESEB IX Congress, Leeds, 2003.
  61. Vieira, C.P.; Vieira, Jorge. "On the evolutionary history of the X/4 fusion of the Drosophila americana". Paper presented in ESEB IX Congress, Leeds, 2003.
  62. Costas, J.; Vieira CP; Casares, F.; Vieira, Jorge. "Molecular evolution of introns with regulatory function in Drosophila.". Paper presented in Molecular Evolution, Sorrento, 2002.
  63. Vieira, C.P.; Vieira, Jorge. "On the forces that created and maintain the genetic differenciation between D. americana “americana” and “texana” chromosomal races at the base of the X chromosome.". Paper presented in Molecular Evolution, Sorrento, 2002.
  64. Vieira, Jorge; Vieira, C.P.; Charlesworth, D.. "The evolution of the cycloidea gene family in Scrophulariaceae". Paper presented in 32nd Annual Meeting of the population Genetics Group, Cambridge, 1999.
  65. Vieira, Jorge; Vieira CP; HARTL DL; LOZOVSKAYA ER. "Patterns of genome evolution". Paper presented in 38th Annual Drosophila Research Conference. Chicago, 1997.
  66. Vieira, Jorge; Vieira CP; HARTL DL; LOZOVSKAYA ER. "A Drosophila virilis physical map as a resource for analyzing patterns of genome evolution". Paper presented in Eastern Great Lakes, Molecular Evolution Meeting. Cornell University, 1996.
Journal article
  1. Sousa e Silva, Rita; Sousa, André Dias; Vieira, Jorge; Vieira, Cristina P.. "The Josephin domain (JD) containing proteins are predicted to bind to the same interactors: Implications for spinocerebellar ataxia type 3 (SCA3) studies using Drosophila melanogaster mutants". Frontiers in Molecular Neuroscience 16 (2023): http://dx.doi.org/10.3389/fnmol.2023.1140719.
    10.3389/fnmol.2023.1140719
  2. Sousa, André; Rocha, Sara; Vieira, Jorge; Reboiro-Jato, Miguel; López-Fernández, Hugo; Vieira, Cristina P.. "On the identification of potential novel therapeutic targets for spinocerebellar ataxia type 1 (SCA1) neurodegenerative disease using EvoPPI3". Journal of Integrative Bioinformatics 0 0 (2023): http://dx.doi.org/10.1515/jib-2022-0056.
    10.1515/jib-2022-0056
  3. Roque, J; Brito, A; Rocha, M; Pissarra, J; Nunes, T; Bessa, M; Vieira, J; et al. "Isolation and characterization of soil cyanobacteria and microalgae and evaluation of their potential as plant biostimulants". PLANT AND SOIL (2023):
    10.1007/s11104-023-06217
  4. Duque, Pedro; Vieira, Cristina P.; Vieira, Jorge. "Advances in Novel Animal Vitamin C Biosynthesis Pathways and the Role of Prokaryote-Based Inferences to Understand Their Origin". Genes 13 10 (2022): 1917. http://dx.doi.org/10.3390/genes13101917.
    10.3390/genes13101917
  5. Soares, Ricardo; Vieira, Cristina P.; Vieira, Jorge. "Predictive Models of within- and between-Species SARS-CoV-2 Transmissibility". Viruses 14 7 (2022): 1565. http://dx.doi.org/10.3390/v14071565.
    10.3390/v14071565
  6. Duque, Pedro; Vieira, Cristina P.; Bastos, Bárbara; Vieira, Jorge. "The evolution of vitamin C biosynthesis and transport in animals". BMC Ecology and Evolution 22 1 (2022): http://dx.doi.org/10.1186/s12862-022-02040-7.
    10.1186/s12862-022-02040-7
  7. Brito, Ângela; Rocha, Mariana; Kaštovský, Jan; Vieira, Jorge; Vieira, Cristina P.; Ramos, Vitor; Correia, Manuel; et al. "A new cyanobacterial species with a protective effect on lettuce grown under salinity stress: Envisaging sustainable agriculture practices". Journal of Applied Phycology (2022): http://dx.doi.org/10.1007/s10811-022-02692-4.
    10.1007/s10811-022-02692-4
  8. Nogueira-Rodrigues, Joana; Leite, Sérgio C.; Pinto-Costa, Rita; Sousa, Sara C.; Luz, Liliana L.; Sintra, Maria A.; Oliveira, Raquel; et al. "Rewired glycosylation activity promotes scarless regeneration and functional recovery in spiny mice after complete spinal cord transection". Developmental Cell 57 4 (2022): 440-450.e7. http://dx.doi.org/10.1016/j.devcel.2021.12.008.
    10.1016/j.devcel.2021.12.008
  9. Kapun, Martin; Nunez, Joaquin C B; Bogaerts-Márquez, María; Murga-Moreno, Jesús; Paris, Margot; Outten, Joseph; Coronado-Zamora, Marta; et al. "Drosophila Evolution over Space and Time (DEST): A New Population Genomics Resource". Molecular Biology and Evolution 38 12 (2021): 5782-5805. http://dx.doi.org/10.1093/molbev/msab259.
    10.1093/molbev/msab259
  10. López-Fernández, Hugo; Vieira, Cristina P.; Ferreira, Pedro; Gouveia, Paula; Fdez-Riverola, Florentino; Reboiro-Jato, Miguel; Vieira, Jorge. "On the Identification of Clinically Relevant Bacterial Amino Acid Changes at the Whole Genome Level Using Auto-PSS-Genome". Interdisciplinary Sciences: Computational Life Sciences 13 2 (2021): 334-343. http://dx.doi.org/10.1007/s12539-021-00439-2.
    Open access • Published • 10.1007/s12539-021-00439-2
  11. Wallace, Megan A; Coffman, Kelsey A; Gilbert, Clément; Ravindran, Sanjana; Albery, Gregory F; Abbott, Jessica; Argyridou, Eliza; et al. "The discovery, distribution, and diversity of DNA viruses associated with Drosophila melanogaster in Europe". Virus Evolution 7 1 (2021): 1-23. http://dx.doi.org/10.1093/ve/veab031.
    Open access • Published • 10.1093/ve/veab031
  12. Vieira, J.; Pimenta, J.; Gomes, A.; Laia, J.; Rocha, S.; Heitzler, P.; Vieira, C. P.. "The identification of the Rosa S-locus and implications on the evolution of the Rosaceae gametophytic self-incompatibility systems". Scientific Reports 11 1 (2021): http://dx.doi.org/10.1038/s41598-021-83243-8.
    10.1038/s41598-021-83243-8
  13. Reis, Micael; Wiegleb, Gordon; Claude, Julien; Lata, Rodrigo; Horchler, Britta; Ha, Ngoc-Thuy; Reimer, Christian; et al. "Multiple loci linked to inversions are associated with eye size variation in species of the Drosophila virilis phylad". Scientific Reports 10 1 (2020): http://dx.doi.org/10.1038/s41598-020-69719-z.
    10.1038/s41598-020-69719-z
  14. Brito, Ângela; Vieira, Jorge; Vieira, Cristina P.; Zhu, Tao; Leão, Pedro N.; Ramos, Vitor; Lu, Xuefeng; et al. "Comparative Genomics Discloses the Uniqueness and the Biosynthetic Potential of the Marine Cyanobacterium Hyella patelloides". Frontiers in Microbiology 11 (2020): http://dx.doi.org/10.3389/fmicb.2020.01527.
    10.3389/fmicb.2020.01527
  15. Kapun, Martin; Barrón, Maite G; Staubach, Fabian; Obbard, Darren J; Wiberg, R Axel W; Vieira, Jorge; Goubert, Clément; et al. "Genomic Analysis of European Drosophila melanogaster Populations Reveals Longitudinal Structure, Continent-Wide Selection, and Previously Unknown DNA Viruses". Molecular Biology and Evolution 37 9 (2020): 2661-2678. http://dx.doi.org/10.1093/molbev/msaa120.
    10.1093/molbev/msaa120
  16. Sousa, Jeremy; Cá, Baltazar; Maceiras, Ana Raquel; Simões-Costa, Luisa; Fonseca, Kaori L.; Fernandes, Ana Isabel; Ramos, Angélica; et al. "Mycobacterium tuberculosis associated with severe tuberculosis evades cytosolic surveillance systems and modulates IL-1ß production". Nature Communications 11 1 (2020): http://dx.doi.org/10.1038/s41467-020-15832-6.
    10.1038/s41467-020-15832-6
  17. Lopez-Fernandez, Hugo; Duque, Pedro; Vazquez, Noe; Fdez-Riverola, Florentino; Reboiro-Jato, Miguel; Vieira, Cristina P.; Vieira, Jorge. "SEDA: a Desktop Tool Suite for FASTA Files Processing". IEEE/ACM Transactions on Computational Biology and Bioinformatics (2020): 1-1. http://dx.doi.org/10.1109/tcbb.2020.3040383.
    10.1109/tcbb.2020.3040383
  18. Rocha, Sara; Vieira, Jorge; Vázquez, Noé; López-Fernández, Hugo; Fdez-Riverola, Florentino; Reboiro-Jato, Miguel; Sousa, André D.; Vieira, Cristina P.. "ATXN1 N-terminal region explains the binding differences of wild-type and expanded forms". BMC Medical Genomics 12 1 (2019): http://dx.doi.org/10.1186/s12920-019-0594-4.
    10.1186/s12920-019-0594-4
  19. Musasa, Stephen T.; Mashingaidze, Arnold B.; Musundire, Robert; Aguiar, Ana A. R. M.; Vieira, Jorge; Vieira, Cristina P.. "Fruit fly identification, population dynamics and fruit damage during fruiting seasons of sweet oranges in Rusitu Valley, Zimbabwe". Scientific Reports 9 1 (2019): http://dx.doi.org/10.1038/s41598-019-50001-w.
    10.1038/s41598-019-50001-w
  20. Vieira, Jorge; Rocha, Sara; Vázquez, Noé; López-Fernández, Hugo; Fdez-Riverola, Florentino; Reboiro-Jato, Miguel; Vieira, Cristina P.. "Predicting Specificities Under the Non-self Gametophytic Self-Incompatibility Recognition Model". Frontiers in Plant Science 10 (2019): http://dx.doi.org/10.3389/fpls.2019.00879.
    10.3389/fpls.2019.00879
  21. Henriques, Sílvia F.; Duque, Pedro; López-Fernández, Hugo; Vázquez, Noé; Fdez-Riverola, Florentino; Reboiro-Jato, Miguel; Vieira, Cristina P.; Vieira, Jorge. "Multiple independent L-gulonolactone oxidase (GULO) gene losses and vitamin C synthesis reacquisition events in non-Deuterostomian animal species". BMC Evolutionary Biology 19 1 (2019): http://dx.doi.org/10.1186/s12862-019-1454-8.
    10.1186/s12862-019-1454-8
  22. Mota, Rita; Alves, Marianne; Vieira, Cristina P.; Vieira, Jorge; Tamagnini, Paula; Saraiva, Aurélia. "Didymozoids in Muscle of Atlantic Chub Mackerel (Scomber colias)". Acta Parasitologica 64 2 (2019): 308-315. http://dx.doi.org/10.2478/s11686-019-00049-5.
    10.2478/s11686-019-00049-5
  23. Vázquez, Noé; López-Fernández, Hugo; Vieira, Cristina P.; Fdez-Riverola, Florentino; Vieira, Jorge; Reboiro-Jato, Miguel. "BDBM 1.0: A Desktop Application for Efficient Retrieval and Processing of High-Quality Sequence Data and Application to the Identification of the Putative Coffea S-Locus". Interdisciplinary Sciences: Computational Life Sciences 11 1 (2019): 57-67. http://dx.doi.org/10.1007/s12539-019-00320-3.
    10.1007/s12539-019-00320-3
  24. Vázquez, Noé; Rocha, Sara; López-Fernández, Hugo; Torres, André; Camacho, Rui; Fdez-Riverola, Florentino; Vieira, Jorge; Vieira, Cristina P.; Reboiro-Jato, Miguel. "EvoPPI 1.0: a Web Platform for Within- and Between-Species Multiple Interactome Comparisons and Application to Nine PolyQ Proteins Determining Neurodegenerative Diseases". Interdisciplinary Sciences: Computational Life Sciences 11 1 (2019): 45-56. http://dx.doi.org/10.1007/s12539-019-00317-y.
    10.1007/s12539-019-00317-y
  25. López-Fernández, Hugo; Duque, Pedro; Henriques, Sílvia; Vázquez, Noé; Fdez-Riverola, Florentino; Vieira, Cristina P.; Reboiro-Jato, Miguel; Vieira, Jorge. "Bioinformatics Protocols for Quickly Obtaining Large-Scale Data Sets for Phylogenetic Inferences". Interdisciplinary Sciences: Computational Life Sciences 11 1 (2018): 1-9. http://dx.doi.org/10.1007/s12539-018-0312-5.
    10.1007/s12539-018-0312-5
  26. Reis, Micael; Vieira, Cristina P; Lata, Rodrigo; Posnien, Nico; Vieira, Jorge. "Origin and Consequences of Chromosomal Inversions in thevirilisGroup ofDrosophila". Genome Biology and Evolution 10 12 (2018): 3152-3166. http://dx.doi.org/10.1093/gbe/evy239.
    10.1093/gbe/evy239
  27. Pratas MI; Aguiar B; Vieira J; Nunes V; Teixeira V; Fonseca NA; Iezzoni A; van Nocker S; Vieira CP. "Inferences on specificity recognition at the Malus×domestica gametophytic self-incompatibility system.". Scientific reports (2018): http://europepmc.org/abstract/med/29379047.
    10.1038/s41598-018-19820-1
  28. Vázquez N; Vieira CP; Amorim BSR; Torres A; López-Fernández H; Fdez-Riverola F; Sousa JLR; Reboiro-Jato M; Vieira J. "Large Scale Analyses and Visualization of Adaptive Amino Acid Changes Projects.". Interdisciplinary sciences, computational life sciences (2018): http://europepmc.org/abstract/med/29383564.
    10.1007/s12539-018-0282-7
  29. Brito, Â.; Ramos, V.; Mota, R.; Lima, S.; Santos, A.; Vieira, J.; Vieira, C.P.; et al. "Description of new genera and species of marine cyanobacteria from the Portuguese Atlantic coast". Molecular Phylogenetics and Evolution 111 (2017): 18-34. http://www.scopus.com/inward/record.url?eid=2-s2.0-85015948750&partnerID=MN8TOARS.
    10.1016/j.ympev.2017.03.006
  30. Reis, M.; Silva, A.C.; Vieira, C.P.; Vieira, J.. "The Drosophila melanogaster Muc68E mucin gene influences adult size, starvation tolerance, and cold recovery". G3: Genes, Genomes, Genetics 6 7 (2016): 1841-1851. http://www.scopus.com/inward/record.url?eid=2-s2.0-84978388450&partnerID=MN8TOARS.
    10.1534/g3.116.029934
  31. Reis, M.; Valer, F.B.; Vieira, C.P.; Vieira, J.. "Drosophila Americana diapausing females show features typical of young flies". PLoS ONE 10 9 (2015): http://www.scopus.com/inward/record.url?eid=2-s2.0-84946949500&partnerID=MN8TOARS.
    10.1371/journal.pone.0138758
  32. Aguiar, B.; Vieira, J.; Cunha, A.E.; Fonseca, N.A.; Iezzoni, A.; Van Nocker, S.; Vieira, C.P.. "Convergent evolution at the gametophytic self-incompatibility system in Malus and Prunus". PLoS ONE 10 5 (2015): http://www.scopus.com/inward/record.url?eid=2-s2.0-84930639901&partnerID=MN8TOARS.
    10.1371/journal.pone.0126138
  33. Aguiar, B.; Vieira, J.; Cunha, A.E.; Vieira, C.P.. "No evidence for Fabaceae Gametophytic self-incompatibility being determined by Rosaceae, Solanaceae, and Plantaginaceae S-RNase lineage genes". BMC Plant Biology 15 1 (2015): http://www.scopus.com/inward/record.url?eid=2-s2.0-84930079488&partnerID=MN8TOARS.
    10.1186/s12870-015-0497-2
  34. Pereira, S.B.; Mota, R.; Vieira, C.P.; Vieira, J.; Tamagnini, P.. "Phylum-wide analysis of genes/proteins related to the last steps of assembly and export of extracellular polymeric substances (EPS) in cyanobacteria". Scientific Reports 5 (2015): http://www.scopus.com/inward/record.url?eid=2-s2.0-84943302918&partnerID=MN8TOARS.
    10.1038/srep14835
  35. Sillero, N.; Reis, M.; Vieira, C.P.; Vieira, J.; Morales-Hojas, R.. "Niche evolution and thermal adaptation in the temperate species Drosophila americana". Journal of Evolutionary Biology 27 8 (2014): 1549-1561. http://www.scopus.com/inward/record.url?eid=2-s2.0-84904423388&partnerID=MN8TOARS.
    10.1111/jeb.12400
  36. Reis, M.; Páscoa, I.; Rocha, H.; Aguiar, B.; Vieira, C.P.; Vieira, J.. "Genes belonging to the insulin and ecdysone signaling pathways can contribute to developmental time, lifespan and abdominal size variation in Drosophila americana". PLoS ONE 9 1 (2014): http://www.scopus.com/inward/record.url?eid=2-s2.0-84900325167&partnerID=MN8TOARS.
    10.1371/journal.pone.0086690
  37. Aguiar, B.; Vieira, J.; Cunha, A.E.; Fonseca, N.A.; Reboiro-Jato, D.; Reboiro-Jato, M.; Fdez-Riverola, F.; Raspé, O.; Vieira, C.P.. "Patterns of evolution at the gametophytic self-incompatibility Sorbus aucuparia (Pyrinae) S pollen genes support the non-self recognition by multiple factors model". Journal of Experimental Botany 64 8 (2013): 2423-2434. http://www.scopus.com/inward/record.url?eid=2-s2.0-84877995131&partnerID=MN8TOARS.
    10.1093/jxb/ert098
  38. Araújo, A.R.; Reis, M.; Rocha, H.; Aguiar, B.; Morales-Hojas, R.; Macedo-Ribeiro, S.; Fonseca, N.A.; et al. "The Drosophila melanogaster methuselah Gene: A Novel Gene with Ancient Functions". PLoS ONE 8 5 (2013): http://www.scopus.com/inward/record.url?eid=2-s2.0-84877819189&partnerID=MN8TOARS.
    10.1371/journal.pone.0063747
  39. Costa, M.; Cruz, E.; Barton, J.C.; Thorstensen, K.; Morais, S.; Da Silva, B.M.; Pinto, J.P.; et al. "Effects of highly conserved major histocompatibility complex (MHC) extended haplotypes on iron and low CD8+T lymphocyte phenotypes in HFE C282Y homozygous hemochromatosis patients from three geographically distant areas". PLoS ONE 8 11 (2013): http://www.scopus.com/inward/record.url?eid=2-s2.0-84891891855&partnerID=MN8TOARS.
    10.1371/journal.pone.0079990
  40. Fonseca, N.A.; Morales-Hojas, R.; Reis, M.; Rocha, H.; Vieira, C.P.; Nolte, V.; Schlötterer, C.; Vieira, J.. "Drosophila americana as a model species for comparative studies on the molecular basis of phenotypic variation". Genome Biology and Evolution 5 4 (2013): 661-679. http://www.scopus.com/inward/record.url?eid=2-s2.0-84876523283&partnerID=MN8TOARS.
    10.1093/gbe/evt037
  41. Morales-Hojas, R.; Vieira, J.. "Correction: Phylogenetic patterns of geographical and ecological diversification in the subgenus Drosophila (PLoS ONE)". PLoS ONE 8 5 (2013): http://www.scopus.com/inward/record.url?eid=2-s2.0-84895508955&partnerID=MN8TOARS.
    10.1371/annotation/28ac6052-4f87-4b88-a817-0cd5743e83d6
  42. Loureiro, T.; Camacho, R.; Vieira, J.; Fonseca, N.A.. "Improving the performance of Transposable Elements detection tools.". Journal of integrative bioinformatics 10 3 (2013): http://www.scopus.com/inward/record.url?eid=2-s2.0-84902891691&partnerID=MN8TOARS.
  43. Fonseca, N.A.; Vieira, C.P.; Schlötterer, C.; Vieira, J.. "The DAIBAM MITE element is involved in the origin of one fixed and two polymorphic Drosophila virilis phylad inversions". Fly 6 2 (2012): 71-74. http://www.scopus.com/inward/record.url?eid=2-s2.0-84862502852&partnerID=MN8TOARS.
    10.4161/fly.19423
  44. Lagisz, M.; Wen, S.-Y.; Routtu, J.; Klappert, K.; Mazzi, D.; Morales-Hojas, R.; Schäfer, M.A.; et al. "Two distinct genomic regions, harbouring the period and fruitless genes, affect male courtship song in Drosophila montana". Heredity 108 6 (2012): 602-608. http://www.scopus.com/inward/record.url?eid=2-s2.0-84861344330&partnerID=MN8TOARS.
    10.1038/hdy.2011.129
  45. Morales-Hojas, R.; Vieira, J.. "Phylogenetic Patterns of Geographical and Ecological Diversification in the Subgenus Drosophila". PLoS ONE 7 11 (2012): http://www.scopus.com/inward/record.url?eid=2-s2.0-84869012897&partnerID=MN8TOARS.
    10.1371/journal.pone.0049552
  46. Reboiro-Jato, D.; Reboiro-Jato, M.; Fdez-Riverola, F.; Vieira, C.P.; Fonseca, N.A.; Vieira, J.. "ADOPS--Automatic Detection Of Positively Selected Sites.". Journal of integrative bioinformatics 9 3 (2012): http://www.scopus.com/inward/record.url?eid=2-s2.0-84875034333&partnerID=MN8TOARS.
  47. Morales-Hojas, R.; Reis, M.; Vieira, C.P.; Vieira, J.. "Resolving the phylogenetic relationships and evolutionary history of the Drosophila virilis group using multilocus data". Molecular Phylogenetics and Evolution 60 2 (2011): 249-258. http://www.scopus.com/inward/record.url?eid=2-s2.0-79957916794&partnerID=MN8TOARS.
    10.1016/j.ympev.2011.04.022
  48. Schäfer, M.A.; Routtu, J.; Vieira, J.; Hoikkala, A.; Ritchie, M.G.; Schlötterer, C.. "Multiple quantitative trait loci influence intra-specific variation in genital morphology between phylogenetically distinct lines of Drosophila montana". Journal of Evolutionary Biology 24 9 (2011): 1879-1886. http://www.scopus.com/inward/record.url?eid=2-s2.0-80051667448&partnerID=MN8TOARS.
    10.1111/j.1420-9101.2011.02316.x
  49. Reis, M.; Sousa-Guimarães, S.; Vieira, C.P.; Sunkel, C.E.; Vieira, J.. "Drosophila genes that affect meiosis duration are among the meiosis related genes that are more often found duplicated". PLoS ONE 6 3 (2011): http://www.scopus.com/inward/record.url?eid=2-s2.0-79952523294&partnerID=MN8TOARS.
    10.1371/journal.pone.0017512
  50. Reis, M.; Vieira, C.P.; Morales-Hojas, R.; Aguiar, B.; Rocha, H.; Schlötterer, C.; Vieira, J.. "A comparative study of the short term cold resistance response in distantly related Drosophila species: The role of regucalcin and Frost". PLoS ONE 6 10 (2011): http://www.scopus.com/inward/record.url?eid=2-s2.0-80053451103&partnerID=MN8TOARS.
    10.1371/journal.pone.0025520
  51. Vieira, J.; Vieira, C.P.. "On the identification of human selected loci in grapevines". Heredity 104 4 (2010): 327-328. http://www.scopus.com/inward/record.url?eid=2-s2.0-77950069146&partnerID=MN8TOARS.
    10.1038/hdy.2009.178
  52. Santos, J.S.; Fonseca, N.A.; Vieira, C.P.; Vieira, J.; Casares, F.. "Phylogeny of the teashirt-related zinc finger (tshz) gene family and analysis of the developmental expression of tshz2 and tshz3b in the zebrafish". Developmental Dynamics 239 3 (2010): 1010-1018. http://www.scopus.com/inward/record.url?eid=2-s2.0-77149154313&partnerID=MN8TOARS.
    10.1002/dvdy.22228
  53. Vieira, J.; Ferreira, P.G.; Aguiar, B.; Fonseca, N.A.; Vieira, C.P.. "Evolutionary patterns at the RNase based gametophytic self - Incompatibility system in two divergent Rosaceae groups (Maloideae and Prunus)". BMC Evolutionary Biology 10 1 (2010): http://www.scopus.com/inward/record.url?eid=2-s2.0-77953954949&partnerID=MN8TOARS.
    10.1186/1471-2148-10-200
  54. Schäfer, M.A.; Mazzi, D.; Klappert, K.; Kauranen, H.; Vieira, J.; Hoikkala, A.; Ritchie, M.G.; Schlötterer, C.. "A microsatellite linkage map for Drosophila montana shows large variation in recombination rates, and a courtship song trait maps to an area of low recombination". Journal of Evolutionary Biology 23 3 (2010): 518-527. http://www.scopus.com/inward/record.url?eid=2-s2.0-77749264551&partnerID=MN8TOARS.
    10.1111/j.1420-9101.2009.01916.x
  55. Vieira, J.; Fonseca, N.A.; Vieira, C.P.. "RNase-based gametophytic self-incompatibility evolution: Questioning the hypothesis of multiple independent recruitments of the s-pollen gene". Journal of Molecular Evolution 69 1 (2009): 32-41. http://www.scopus.com/inward/record.url?eid=2-s2.0-67650330593&partnerID=MN8TOARS.
    10.1007/s00239-009-9249-y
  56. Fonseca, N.A.; Vieira, C.P.; Vieira, J.. "Gene classification based on amino acid motifs and residues: The DLX (distal-less) test case". PLoS ONE 4 6 (2009): http://www.scopus.com/inward/record.url?eid=2-s2.0-66749114304&partnerID=MN8TOARS.
    10.1371/journal.pone.0005748
  57. Morales-Hojas, R.; Vieira, C.P.; Reis, M.; Vieira, J.. "Comparative analysis of five immunity-related genes reveals different levels of adaptive evolution in the virilis and melanogaster groups of Drosophila". Heredity 102 6 (2009): 573-578. http://www.scopus.com/inward/record.url?eid=2-s2.0-67349177764&partnerID=MN8TOARS.
    10.1038/hdy.2009.11
  58. Morales-Hojas, R.; Vieira, C.P.; Vieira, J.. "Inferring the evolutionary history of Drosophila americana and Drosophila novamexicana using a multilocus approach and the influence of chromosomal rearrangements in single gene analyses". Molecular Ecology 17 12 (2008): 2910-2926. http://www.scopus.com/inward/record.url?eid=2-s2.0-44849084772&partnerID=MN8TOARS.
    10.1111/j.1365-294X.2008.03796.x
  59. Vieira, J.; Fonseca, N.A.; Santos, R.A.M.; Habu, T.; Tao, R.; Vieira, C.P.. "The number, age, sharing and relatedness of S-locus specificities in Prunus". Genetics Research 90 1 (2008): 17-26. http://www.scopus.com/inward/record.url?eid=2-s2.0-39749108886&partnerID=MN8TOARS.
    10.1017/S0016672307009044
  60. Vieira, J.; Fonseca, N.A.; Vieira, C.P.. "An S-RNase-based gametophytic self-incompatibility system evolved only once in eudicots". Journal of Molecular Evolution 67 2 (2008): 179-190. http://www.scopus.com/inward/record.url?eid=2-s2.0-50249127125&partnerID=MN8TOARS.
    10.1007/s00239-008-9137-x
  61. Tsukamoto, T.; Potter, D.; Tao, R.; Vieira, C.P.; Vieira, J.; Iezzoni, A.F.. "Genetic and molecular characterization of three novel S-haplotypes in sour cherry (Prunus cerasus L.)". Journal of Experimental Botany 59 11 (2008): 3169-3185. http://www.scopus.com/inward/record.url?eid=2-s2.0-49449094798&partnerID=MN8TOARS.
    10.1093/jxb/ern172
  62. Cruz, E.; Whittington, C.; Krikler, S.H.; Mascarenhas, C.; Lacerda, R.; Vieira, J.; Porto, G.. "A new 500 kb haplotype associated with high CD8+ T-lymphocyte numbers predicts a less severe expression of hereditary hemochromatosis.". BMC medical genetics 9 (2008): http://www.scopus.com/inward/record.url?eid=2-s2.0-59649091028&partnerID=MN8TOARS.
    10.1186/1471-2350-9-97
  63. Reis, M.; Vieira, C.P.; Morales-Hojas, R.; Vieira, J.. "An old bilbo-like non-LTR retroelement insertion provides insight into the relationship of species of the virilis group". Gene 425 1-2 (2008): 48-55. http://www.scopus.com/inward/record.url?eid=2-s2.0-53149089756&partnerID=MN8TOARS.
    10.1016/j.gene.2008.08.010
  64. Vieira, J.; Teles, E.; Santos, R.A.M.; Vieira, C.P.. "Recombination at prunus S-locus region SLFL1 gene". Genetics 180 1 (2008): 483-491. http://www.scopus.com/inward/record.url?eid=2-s2.0-52549100538&partnerID=MN8TOARS.
    10.1534/genetics.108.087825
  65. Fonseca, N.A.; Vieira, C.P.; Holland, P.W.H.; Vieira, J.. "Protein evolution of ANTP and PRD homeobox genes". BMC Evolutionary Biology 8 1 (2008): http://www.scopus.com/inward/record.url?eid=2-s2.0-48449098788&partnerID=MN8TOARS.
    10.1186/1471-2148-8-200
  66. Vieira, J.; Santos, R.A.M.; Habu, T.; Tao, R.; Vieira, C.P.. "The Prunus self-incompatibility locus (S locus) is seldom rearranged". Journal of Heredity 99 6 (2008): 657-660. http://www.scopus.com/inward/record.url?eid=2-s2.0-54249133436&partnerID=MN8TOARS.
    10.1093/jhered/esn063
  67. Vieira, J.; Santos, R.A.M.; Ferreira, S.M.; Vieira, C.P.. "Inferences on the number and frequency of S-pollen gene (SFB) specificities in the polyploid Prunus spinosa". Heredity 101 4 (2008): 351-358. http://www.scopus.com/inward/record.url?eid=2-s2.0-52549097774&partnerID=MN8TOARS.
    10.1038/hdy.2008.60
  68. Morales-Hojas, R.; Päällysaho, S.; Vieira, C.P.; Hoikkala, A.; Vieira, J.. "Comparative polytene chromosome maps of D. montana and D. virilis". Chromosoma 116 1 (2007): 21-27. http://www.scopus.com/inward/record.url?eid=2-s2.0-33846589303&partnerID=MN8TOARS.
    10.1007/s00412-006-0075-3
  69. Vieira, J.; Morales-Hojas, R.; Santos, R.A.M.; Vieira, C.P.. "Different positively selected sites at the gametophytic self-incompatibility pistil S-RNase gene in the Solanaceae and Rosaceae (Prunus, Pyrus, and Malus)". Journal of Molecular Evolution 65 2 (2007): 175-185. http://www.scopus.com/inward/record.url?eid=2-s2.0-34548587710&partnerID=MN8TOARS.
    10.1007/s00239-006-0285-6
  70. Vieira, J.; Cardoso, C.S.; Pinto, J.; Patil, K.; Brazdil, P.; Cruz, E.; Mascarenhas, C.; et al. "A putative gene located at the MHC class I region around the D6S105 marker contributes to the setting of CD8+ T-lymphocyte numbers in humans". International Journal of Immunogenetics 34 5 (2007): 359-367. http://www.scopus.com/inward/record.url?eid=2-s2.0-34548525072&partnerID=MN8TOARS.
    10.1111/j.1744-313X.2007.00700.x
  71. Cruz, E.; Vieira, J.; Almeida, S.; Lacerda, R.; Gartner, A.; Cardoso, C.S.; Alves, H.; Porto, G.. "A study of 82 extended HLA haplotypes in HFE-C282Y homozygous hemochromatosis subjects: Relationship to the genetic control of CD8+ T-lymphocyte numbers and severity of iron overload". BMC Medical Genetics 7 (2006): http://www.scopus.com/inward/record.url?eid=2-s2.0-33645218398&partnerID=MN8TOARS.
    10.1186/1471-2350-7-16
  72. Nunes, M.D.S.; Santos, R.A.M.; Ferreira, S.M.; Vieira, J.; Vieira, C.P.. "Variability patterns and positively selected sites at the gametophytic self-incompatibility pollen SFB gene in a wild self-incompatible Prunus spinosa (Rosaceae) population". New Phytologist 172 3 (2006): 577-587. http://www.scopus.com/inward/record.url?eid=2-s2.0-33750012104&partnerID=MN8TOARS.
    10.1111/j.1469-8137.2006.01838.x
  73. Morales-Hojas, R.; Vieira, C.P.; Vieira, J.. "The evolutionary history of the transposable element Penelope in the Drosophila virilis group of species". Journal of Molecular Evolution 63 2 (2006): 262-273. http://www.scopus.com/inward/record.url?eid=2-s2.0-33746404630&partnerID=MN8TOARS.
    10.1007/s00239-005-0213-1
  74. Vieira, C.P.; Almeida, A.; Dias, J.D.; Vieira, J.. "On the location of the gene(s) harbouring the advantageous variant that maintains the X/4 fusion of Drosophila americana". Genetical Research 87 3 (2006): 163-174. http://www.scopus.com/inward/record.url?eid=2-s2.0-33745615839&partnerID=MN8TOARS.
    10.1017/S0016672306008147
  75. Päällysaho, S.; Vieira, C.P.; Hoikkala, A.; Vieira, J.. "Evidence for introgression in differentiated North-American and Finnish Drosophila montana populations". Genetica 123 3 (2005): 285-293. http://www.scopus.com/inward/record.url?eid=2-s2.0-18144416228&partnerID=MN8TOARS.
    10.1007/s10709-004-5090-9
  76. Costas, J.; Pereira, P.S.; Vieira, C.P.; Pinho, S.; Vieira, J.; Casares, F.. "Dynamics and function of intron sequences of the wingless gene during the evolution of the Drosophila genus". Evolution and Development 6 5 (2004): 325-335. http://www.scopus.com/inward/record.url?eid=2-s2.0-4644220375&partnerID=MN8TOARS.
    10.1111/j.1525-142X.2004.04040.x
  77. Cruz, E.; Vieira, J.; Gonçalves, R.; Alves, H.; Almeida, S.; Rodrigues, P.; Lacerda, R.; Porto, G.. "Involvement of the Major Histocompatibility Complex region in the regulation regulation of circulating CD8+ T-cell numbers in humans". Tissue Antigens 64 1 (2004): 25-34. http://www.scopus.com/inward/record.url?eid=2-s2.0-3042826686&partnerID=MN8TOARS.
    10.1111/j.1399-0039.2004.00245.x
  78. Costas, J.; Vieira, C.P.; Casares, F.; Vieira, J.. "Genomic characterization of a repetititve motif strongly associated with developmental genes in Drosophila". BMC Genomics 4 (2003): http://www.scopus.com/inward/record.url?eid=2-s2.0-9144233713&partnerID=MN8TOARS.
    10.1186/1471-2164-4-52
  79. Costas, J.; Casares, F.; Vieira, J.. "Turnover of binding sites for transcription factors involved in early Drosophila development". Gene 310 1-2 (2003): 215-220. http://www.scopus.com/inward/record.url?eid=2-s2.0-0037498017&partnerID=MN8TOARS.
    10.1016/S0378-1119(03)00556-0
  80. Vieira, C.P.; Charlesworth, D.; Vieira, J.. "Evidence for rare recombination at the gametophytic self-incompatibility locus". Heredity 91 3 (2003): 262-267. http://www.scopus.com/inward/record.url?eid=2-s2.0-0141789721&partnerID=MN8TOARS.
    10.1038/sj.hdy.6800326
  81. Vieira, C.P.; Coelho, P.A.; Vieira, J.. "Inferences on the evolutionary history of the Drosophila americana polymorphic X/4 fusion from patterns of polymorphism at the X-linked paralytic and elav genes". Genetics 164 4 (2003): 1459-1469. http://www.scopus.com/inward/record.url?eid=2-s2.0-0041817599&partnerID=MN8TOARS.
  82. Huttunen, S.; Vieira, J.; Hoikkala, A.. "Nucleotide and repeat length variation at the nonA gene of the Drosophila virilis group species and its effects on male courtship song". Genetica 115 2 (2002): 159-167. http://www.scopus.com/inward/record.url?eid=2-s2.0-0036623399&partnerID=MN8TOARS.
    10.1023/A:1020102602268
  83. Vieira, J.. "Two divergent species of the virilis group, Drosophila littoralis and Drosophila virilis, share a replacement polymorphism at the fused locus [3]". Molecular Biology and Evolution 19 4 (2002): 579-581. http://www.scopus.com/inward/record.url?eid=2-s2.0-0036215197&partnerID=MN8TOARS.
  84. Vieira, J.; Hoikkala, A.. "Variability levels, population size and structure of American and European Drosophila montana populations". Heredity 86 4 (2001): 506-511. http://www.scopus.com/inward/record.url?eid=2-s2.0-0034893034&partnerID=MN8TOARS.
    10.1046/j.1365-2540.2001.00863.x
  85. Vieira, J.; McAllister, B.F.; Charlesworth, B.. "Evidence for selection at the fused1 locus of Drosophila americana". Genetics 158 1 (2001): 279-290. http://www.scopus.com/inward/record.url?eid=2-s2.0-0035020912&partnerID=MN8TOARS.
  86. McVean, G.A.T.; Vieira, J.. "Inferring parameters of mutation, selection and demography from patterns of synonymous site evolution in Drosophila". Genetics 157 1 (2001): 245-257. http://www.scopus.com/inward/record.url?eid=2-s2.0-0035157374&partnerID=MN8TOARS.
  87. Vieira, J.; Charlesworth, B.. "Evidence for selection at the fused locus of Drosophila virilis". Genetics 155 4 (2000): 1701-1709. http://www.scopus.com/inward/record.url?eid=2-s2.0-0033890775&partnerID=MN8TOARS.
  88. McVean, G.A.T.; Vieira, J.. "The evolution of codon preferences in Drosophila: A maximum-likelihood approach to parameter estimation and hypothesis testing". Journal of Molecular Evolution 49 1 (1999): 63-75. http://www.scopus.com/inward/record.url?eid=2-s2.0-0032974731&partnerID=MN8TOARS.
    10.1007/PL00006535
  89. Vieira, J.; Charlesworth, B.. "X chromosome DNA variation in Drosophila virilis". Proceedings of the Royal Society B: Biological Sciences 266 1431 (1999): 1905-1912. http://www.scopus.com/inward/record.url?eid=2-s2.0-0033595547&partnerID=MN8TOARS.
    10.1098/rspb.1999.0865
  90. Vieira, C.P.; Vieira, J.; Charlesworth, D.. "Evolution of the cycloidea gene family in Antirrhinum and Misopates". Molecular Biology and Evolution 16 11 (1999): 1474-1483. http://www.scopus.com/inward/record.url?eid=2-s2.0-0032733828&partnerID=MN8TOARS.
    10.1093/oxfordjournals.molbev.a026059
  91. Vieira, J.; Vieira, C.P.; Hartl, D.L.; Lozovskaya, E.R.. "Factors contributing to the hybrid dysgenesis syndrome in Drosophila virilis". Genetical Research 71 2 (1998): 109-117. http://www.scopus.com/inward/record.url?eid=2-s2.0-0031873152&partnerID=MN8TOARS.
    10.1017/S001667239800322X
  92. Vieira, J.; Vieira, C.P.; Hartl, D.L.; Lozovskaya, E.R.. "A framework physical map of Drosophila virilis based on P1 clones: Applications in genome evolution". Chromosoma 106 2 (1997): 99-107. http://www.scopus.com/inward/record.url?eid=2-s2.0-0030809663&partnerID=MN8TOARS.
    10.1007/s004120050229
  93. Vieira, J.; Vieira, C.P.; Hartl, D.L.; Lozovskaya, E.R.. "Discordant rates of chromosome evolution in the Drosophila virilis species group". Genetics 147 1 (1997): 223-230. http://www.scopus.com/inward/record.url?eid=2-s2.0-0030964030&partnerID=MN8TOARS.
  94. Vieira, C.P.; Vieira, J.; Hartl, D.L.. "The evolution of small gene clusters: Evidence for an independent origin of the maltase gene cluster in Drosophila virilis and Drosophila melanogaster". Molecular Biology and Evolution 14 10 (1997): 985-993. http://www.scopus.com/inward/record.url?eid=2-s2.0-0030920456&partnerID=MN8TOARS.
    10.1093/oxfordjournals.molbev.a025715
  95. Vieira, J.; Ferrand, N.. "Four new alleles at the mannose-6-phosphate isomerase locus in rabbit". Animal Genetics 26 1 (1995): 37-38. http://www.scopus.com/inward/record.url?eid=2-s2.0-0029240499&partnerID=MN8TOARS.
    10.1111/j.1365-2052.1995.tb02617.x
Activities

Oral presentation

Presentation title Event name
Host (Event location)
2021/07/01 Drosophila as a SCA3 model: inferences on the Josephin domain role, by Sousa A, Silva R, Vandervoordt C, Vieira J, and Vieira CP II International Meeting of the Portuguese Society of Genetics
Universidade de Trás os Montes e Alto Douro (Vila Real, Portugal)
2021/07/01 On the novel Drosophila melanogaster ascorbic acid synthesis pathway, by Duque P, Marques I, Vieira CP, Vieira J. II International Meeting of the Portuguese Society of Genetics
Universidade de Trás os Montes e Alto Douro (Vila Real, Portugal)
2021/07/01 Positively selected sites (PSS) found in Coronaviridae species using Auto-PSS-Genome, by Ferreira P, López-Fernández H, Vieira CP, Vieira J. II International Meeting of the Portuguese Society of Genetics
Universidade de Trás os Montes e Alto Douro (Vila Real, Portugal)
2019/06/26 Inferring positive selection in large viral datasets. 13th International Conference on Practical Applications of Computational Biology & Bioinformatics: PACBB 2019
(Ávila, Spain)
2019/02/20 EvoPPI 1.0: a Web Platform for Within and Between Species Multiple Interactome Comparisons and Application to Nine polyQ Proteins Determining Neurodegenerative Diseases VIII Bioinformatic Open days, University of Braga, Braga, Portugal
(Braga, Portugal)
2018/07/20 A bioinformatics protocol for quickly creating large-scale phylogenetic trees 12th International Conference on Practical Applications of Computational Biology & Bioinformatics: PACBB 2018
(Toledo, Spain)
2018/06/20 EvoPPI: a web application to compare protein-protein interactions (PPIs) from different databases and species. 12th International Conference on Practical Applications of Computational Biology & Bioinformatics: PACBB 2018
(Toledo, Spain)
2018/06/14 Bioinformatic tools to study Solanaceae S-pollen gametophytic self-incompatibility evolution: BDBM, ADOPS and B+ database Portuguese Society of Genetics Annual meeting 2018
(Porto, Portugal)
2018/06/14 Vitamin C biosynthesis in D. melanogaster: alternatives to GULO and influence of microbiome Portuguese Society of Genetics Annual meeting 2018
(Porto, Portugal)
2018/06/14 New in-silico approach to infer binding surfaces in wild-type and mutant Ataxin-1 Portuguese Society of Genetics Annual meeting 2018
(Porto, Portugal)
2017/08/20 Evolution of eye size and head morphology between Drosophila americana and D. novamexicana ESEB 2017
(Groningen, Netherlands)
2017/06/08 Differences in wing size and shape between Drosophila novamexicana and Drosophila Americana XLI Jornadas Portuguesas de Genética, University of Aveiro
(Aveiro, Portugal)
2017/06/08 Is Fabaceae Gametophytic Self-Incompatibility system S-RNase based? XLI Jornadas Portuguesas de Genética, University of Aveiro
(Aveiro, Portugal)
2016/03/17 Chromosomal inversions and natural selection. 17 th meeting Portugaliae Genetica Portuguese
(Porto, Portugal)
2015/05/25 Genes from distinct lineages determine gametophytic self-incompatibility in Malus and Prunus XXXIX Jornadas Portuguesas de Genética
(Braga, Portugal)
2015/05/25 Drosophila americana diapausing females show features typical of young flies XXXIX Jornadas Portuguesas de Genética
(Braga, Portugal)
2013/08/19 The paradigma of irreversibility in gametophytic self-incompatibility: the Malus and Prunus systems. Congress of the European Society for Evolutionary Biology
(Lisboa, Portugal)
2012/12/06 Polymorphism at Frost gene explains developmental time variability in Drosophila americana Trends In Biodiversity and Evolution- TIBE 2012
(Vairão, Portugal)
2012/05/28 Are all mth-like genes involved in lifespan determination? XXXVII Jornadas Portuguesas de Genética, Lisboa
(Lisboa, Portugal)
2012/03/28 On the Development of a Pipeline for the Automatic Detection of Positively Selected Sites 10th International Conference on Practical Applications of Agents and Multi-Agent Systems, University of Salamanca
(Salamanca, Spain)
2011/12/02 The genetic basis of Drosophila lifespan differences Trends In Biodiversity and Evolution-TIBE 2011; CIBIO
(Vairão, Portugal)
2011/05/30 Mathuselah-like variability esplains lifespan differences in divergent insect species XXXVI Jornadas Portuguesas de Genética
(Coimbra, Portugal)
2002/01/02 Variability levels and patterns at the D. virilis eyless gene Population Genetics Group. 35th Annual Meeting, University of Leeds
(Leeds, United Kingdom)
1999/08/23 DNA polymorphism studies on the fused gene of Drosophila virilis VII ESEB Congress
(Barcelona, Spain)

Supervision

Thesis Title
Role 		Degree Subject (Type)
Institution / Organization
2021 - 2025 Predicting the behavior of COVID19 pandemics
Co-supervisor
 Biomedical Sciences Doctoral Degree (PhD)
Universidade do Porto Instituto de Ciências Biomédicas Abel Salazar, Portugal
2020 - 2021 A Docker-oriented Pipeline for the analysis of Protein- Protein Interactions
Supervisor
Universidade do Porto Faculdade de Ciências, Portugal
2020 - 2021 A lesson from Coronaviridae: Predictive models for SARS-CoV-2 infection evolution and identification of potential future threats
Supervisor
 Cell and Molecular Biology Master’s Degree (Master)
Universidade do Porto Faculdade de Ciências, Portugal
2020 - 2021 Drosophila melanogaster as a model for the identification of the ataxin-3 interaction regions
Co-supervisor
 Cell and Molecular Biology Master’s Degree (Master)
Universidade do Porto Faculdade de Ciências, Portugal
2020 - 2021 S-Locus Finder: An automated pipeline tool for the identification of S-locus genes
Supervisor
 Bioinformatics and Computation Biology (Master)
Universidade do Porto Faculdade de Ciências, Portugal
2020 - 2021 Insights on the Heat Resistance of Drosophila melanogaster
Supervisor
Universidade de Aveiro, Portugal
2018 - 2019 An evolutionary approach to understand how interactomes change when expansions of the polyglutamine (polyQ) tracts occur: implications for the human polyQ diseases
Co-supervisor
 Biologia Celular e Molecular (Master)
Universidade do Porto Faculdade de Ciências, Portugal
2018 - 2019 Regucalcin Evolution and Gene Function
Supervisor
 Biologia Molecular e Celular (Master)
Universidade de Aveiro, Portugal
2017 - 2019 Silvía Henriques Postdoctoral Research Fellow - Norte2020NEURO-BPD, Norte-01-0145-FEDER-000008 - Porto Neurosciences and Neurologic Disease Research Initiative at I3S 2018-2019
Supervisor
2016 - 2019 Sara Rocha Postdoctoral Research Fellow - Norte2020NEURO-BPD39, Norte-01-0145-FEDER-000008 - Porto Neurosciences and Neurologic Disease Research Initiative at I3S 2017-19
Co-supervisor
2017/07/01 - 2018/06/29 Hugo López Fernández Postdoctoral Research Fellow - XUNTA DE GALICIA, ED481B 2016/068 – 0, Axudas de apoio á etapa de formación posdoutoral nas universidades do SUG, nos organismos públicos de investigación de Galicia e noutras entidades do Sistema galego de I+D+i
Supervisor
2018 - 2018 Evolution of the vitamin C biosynthetic pathway and transport mechanism: from the global perspective to a Drosophila melanogaster case study
Supervisor
 Biologia Celular e Molecular (Master)
Universidade do Porto Faculdade de Ciências, Portugal
2017 - 2018 Rosaceae S-locus Evolution
Supervisor
 Biologia Funcional e Biotecnologia de Plantas (Master)
Universidade do Porto Faculdade de Ciências, Portugal
2017 - 2017 Candidate Genes Related with Development Time Variation in Drosophila americana and D. novamexicana
Supervisor
 Biologia Celular e Molecular (Master)
Universidade do Porto Faculdade de Ciências, Portugal
2016 - 2017 Automatic comparison of interactomes
Supervisor
 Engenharia Informática e Computação (Master)
Universidade do Porto Faculdade de Engenharia, Portugal
2016 - 2017 Gametophytic Self-incompatibility in Eudicots
Co-supervisor
 Genética Molecular (Master)
Universidade do Minho, Portugal
2016 - 2017 Differences in wing size and shape between Drosophila novamexicana and D. americana
Supervisor
 Genética Molecular (Master)
Universidade do Minho, Portugal
2012 - 2015 Characterization of the S-locus in Rosidae (Rosaceae and Fabaceae)
Co-supervisor
 Biodiversidade, Genética e Evolução (PhD)
Universidade do Porto Faculdade de Ciências, Portugal
2013 - 2014 Molecular basis of cold resistance: the role of Frost and Muc68E
Supervisor
 Biologia Celular e Molecular (Master)
Universidade do Porto Faculdade de Ciências, Portugal
2010 - 2014 On the identification and evolution of ecologically relevant genes in Drosophila americana
Supervisor
 Biodiversidade, Genética e Evolução (PhD)
Universidade do Porto Faculdade de Ciências, Portugal
2011 - 2012 Are all mth-like genes involved in lifespan determination?
Supervisor
Universidade do Minho, Portugal
2011 - 2012 The genetic basis of lifespan in Drosophila americana
Supervisor
Universidade de Aveiro, Portugal
2008 - 2009 Comparative molecular evolutionary analyses in the virilis and melanogaster groups of Drosophila
Supervisor
Universidade do Minho, Portugal
2002 - 2006 Genetic Control of Lymphocyte Numbers: Hemochromatosis as a Model
Co-supervisor
 Ciências Biomédicas (PhD)
Universidade do Porto Instituto de Ciências Biomédicas Abel Salazar, Portugal

Event organisation

Event name
Type of event (Role) 		Institution / Organization
2013 - 2013 In charge of the organization of the XXXVIII Jornadas Portuguesas de Genética (2013 - 2013)

Conference scientific committee

Conference name Conference host
2011 - 2020 Member of the scientific committee of the 5th (2011), 6th (2012) 7th (2013), 8th (2014), 9th (2015), 10th (2016), 11th (2017), 12th (2018), 13th (2019) and 14th (2020) International Conference on Practical Applications of Computational Biology & Bioinformatics (PACBB).
2012 - 2012 Member of the scientific committee of the XXXVII Jornadas Portuguesas de Genética

Course / Discipline taught

Academic session Degree Subject (Type) Institution / Organization
2018 - Current Co-regent of the classes in Molecular Evolution Bioinfarmática e Biologia Computacional (Mestrado) Universidade do Porto Faculdade de Ciências, Portugal
2013 - Current Co-regent of the classes in Bioinfromatics Biologia Molecular e Celular (Doutoramento) Universidade do Porto Faculdade de Ciências, Portugal
2012 - Current Co-regent of the classes in Molecular Evolution Biologia Celular e Molecular (Mestrado integrado) Universidade do Porto Faculdade de Ciências, Portugal
2006 - Current Co-regent of the Bioinformatics course from Mestrado Integrado em Bioengenharia Bioengenharia (Mestrado integrado) Universidade do Porto Instituto de Ciências Biomédicas Abel Salazar, Portugal

Other jury / evaluation

Activity description Institution / Organization
2019/01/01 - 2019/12/31 Evaluator of research projects for the German Research Foundation (DFG) in 2019 German Research Foundation (DFG), Germany
2005 - 2015 Member of the panel Molecular and Structural Biology evaluating PhD and PostDoc grants for the Portuguese Foundation for Science and Thecnology; FCT) in 2005, 2006, 2007, 2008, 2009, 2010 and 2011, 2015. Fundação para a Ciência e a Tecnologia, Portugal
2006 - 2006 Evaluator of Research projects for the Austrian Science Foundation
Distinctions

Award

2018 Co-authorship work Inês Costa awarded the Honorable Mention-Communications By Poster-Biological Sciences at the IJUP-Faculdade de Medicina da Universidade do Porto
2002 Burgen Scholar Award Academia Europaea