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Duarte Gouveia.
Identification

Personal identification

Full name
Duarte Domingos Gouveia

Citation names

  • Gouveia, Duarte

Author identifiers

Ciência ID
411B-0349-0631
ORCID iD
0000-0001-5578-3370

Email addresses

  • duarte.gouveia2@cea.fr (Professional)
  • duartedg@hotmail.com (Personal)

Telephones

Mobile phone
  • (+351) 963511057 (Personal)

Addresses

  • 67 route de lyon, 84000, Avignon, Vaucluse, France (Personal)

Knowledge fields

  • Natural sciences - Biological Sciences - Molecular Biology
  • Natural sciences - Biological Sciences - Biochemical Research Methods
  • Natural sciences - Earth and Environmental Sciences - Environmental Sciences
  • Natural sciences - Biological Sciences - Microbiology

Languages

Language Speaking Reading Writing Listening Peer-review
Portuguese (Mother tongue)
English Advanced (C1) Advanced (C1) Advanced (C1) Proficiency (C2) Advanced (C1)
French Advanced (C1) Advanced (C1) Advanced (C1) Advanced (C1) Advanced (C1)
Education
Degree Classification
2014 - 2017
Concluded
 Ecotoxicologia molecular (Doctorat)
Université Claude Bernard Lyon 1, France
2010 - 2012
Concluded
 Bioquímica (Mestrado integrado)
Major in Métodos biomoleculares
Universidade de Aveiro, Portugal
2006 - 2010
Concluded
 Bioquímica (Licenciatura)
Universidade da Madeira, Portugal
Affiliation

Science

Category
Host institution 		Employer
2018/01 - 2020/12 Postdoc (Research) Commissariat à l’énergie atomique et aux énergies alternatives Marcoule, France
2013 - 2014 Research Trainee (Research) Université de Reims Champagne-Ardenne, France
Outputs

Publications

Journal article
  1. Gouveia, Duarte. "Quick microbial molecular phenotyping by differential shotgun proteomics.". Environmental microbiology (2020): https://doi.org/10.1111/1462-2920.14975.
    10.1111/1462-2920.14975
  2. Gouveia, Duarte. "Shotgun proteomics datasets acquired on Gammarus pulex animals sampled from the wild.". Data in brief (2019): https://europepmc.org/articles/PMC6820120.
    10.1016/j.dib.2019.104650
  3. Gouveia, Duarte. "De novo transcriptomes of 14 gammarid individuals for proteogenomic analysis of seven taxonomic groups.". Scientific data (2019): https://europepmc.org/articles/PMC6764967.
    10.1038/s41597-019-0192-5
  4. Gouveia, Duarte. "Evaluation of Sample Preparation Methods for Fast Proteotyping of Microorganisms by Tandem Mass Spectrometry.". Frontiers in Microbiology (2019): https://europepmc.org/articles/PMC6742703.
    10.3389/fmicb.2019.01985
  5. Gouveia, Duarte. "Comparative proteomics in the wild: Accounting for intrapopulation variability improves describing proteome response in a Gammarus pulex field population exposed to cadmium.". Aquatic toxicology (Amsterdam, Netherlands) (2019): https://doi.org/10.1016/j.aquatox.2019.105244.
    10.1016/j.aquatox.2019.105244
  6. Gouveia, Duarte. "On-Line Solid Phase Extraction Liquid Chromatography-Mass Spectrometry Method for Multiplexed Proteins Quantitation in an Ecotoxicology Test Specie: Gammarus fossarum". Journal of Applied Bioanalysis (2018): http://dx.doi.org/10.17145/jab.18.012.
    10.17145/jab.18.012
  7. Gouveia, D.; Almunia, C.; Cogne, Y.; Pible, O.; Degli-Esposti, D.; Salvador, A.; Cristobal, S.; et al. "Ecotoxicoproteomics: A decade of progress in our understanding of anthropogenic impact on the environment". Journal of Proteomics (2018): http://www.scopus.com/inward/record.url?eid=2-s2.0-85058405842&partnerID=MN8TOARS.
    10.1016/j.jprot.2018.12.001
  8. Trapp, J.; Gouveia, D.; Almunia, C.; Pible, O.; Esposti, D.D.; Gaillard, J.-C.; Chaumot, A.; Geffard, O.; Armengaud, J.. "Digging deeper into the pyriproxyfen-response of the amphipod Gammarus fossarum with a next-generation ultra-high-field orbitrap analyser: New perspectives for environmental toxicoproteomics". Frontiers in Environmental Science 6 JUN (2018): http://www.scopus.com/inward/record.url?eid=2-s2.0-85048799932&partnerID=MN8TOARS.
    10.3389/fenvs.2018.00054
  9. Gouveia, D.; Bonneton, F.; Almunia, C.; Armengaud, J.; Quéau, H.; Degli-Esposti, D.; Geffard, O.; Chaumot, A.. "Identification, expression, and endocrine-disruption of three ecdysone-responsive genes in the sentinel species Gammarus fossarum". Scientific Reports 8 1 (2018): http://www.scopus.com/inward/record.url?eid=2-s2.0-85043246138&partnerID=MN8TOARS.
    10.1038/s41598-018-22235-7
  10. Charnot, A.; Gouveia, D.; Armengaud, J.; Almunia, C.; Chaumot, A.; Lemoine, J.; Geffard, O.; Salvador, A.. "Multiplexed assay for protein quantitation in the invertebrate Gammarus fossarum by liquid chromatography coupled to tandem mass spectrometry". Analytical and Bioanalytical Chemistry 409 16 (2017): 3969-3991. http://www.scopus.com/inward/record.url?eid=2-s2.0-85017523605&partnerID=MN8TOARS.
    10.1007/s00216-017-0348-0
  11. Gouveia, D.; Chaumot, A.; Charnot, A.; Queau, H.; Armengaud, J.; Almunia, C.; Salvador, A.; Geffard, O.. "Assessing the relevance of a multiplexed methodology for proteomic biomarker measurement in the invertebrate species Gammarus fossarum: A physiological and ecotoxicological study". Aquatic Toxicology 190 (2017): 199-209. http://www.scopus.com/inward/record.url?eid=2-s2.0-85025668267&partnerID=MN8TOARS.
    10.1016/j.aquatox.2017.07.007
  12. Gouveia, D.; Chaumot, A.; Charnot, A.; Almunia, C.; François, A.; Navarro, L.; Armengaud, J.; Salvador, A.; Geffard, O.. "Ecotoxico-Proteomics for Aquatic Environmental Monitoring: First in Situ Application of a New Proteomics-Based Multibiomarker Assay Using Caged Amphipods". Environmental Science and Technology 51 22 (2017): 13417-13426. http://www.scopus.com/inward/record.url?eid=2-s2.0-85035331719&partnerID=MN8TOARS.
    10.1021/acs.est.7b03736
  13. Gouveia, D.D.; Silva, A.M.N.; Vitorino, R.; Domingues, M.R.M.; Domingues, P.. "Efficiency of trypsin digestion for mass-spectrometry-based identification and quantification of oxidized proteins: Evaluation of the digestion of oxidized bovine serum albumin". European Journal of Mass Spectrometry 20 3 (2014): 271-278. http://www.scopus.com/inward/record.url?eid=2-s2.0-84902484300&partnerID=MN8TOARS.
    10.1255/ejms.1279
Activities

Oral presentation

Presentation title Event name
Host (Event location)
2019/12/19 Protéomique d'animaux sentinelles pour l'écotoxicologie Protéomique/Métabolomique sur les interactions hôte-vecteur-pathogène
CIRAD (Montpellier, France)
2019/11/28 Ecotoxicoproteomics and environmental monitoring: defining robust and specific biomarkers from non-model species
FCUL (Lisboa, Portugal)
2019/11/28 A novel metaproteomics approach to better assess the dynamics and functions of microbiomes from bioindicator species
ITQB (Lisboa, Portugal)
2019/05/27 A novel metaproteomics approach to better assess the dynamics and functions of microbiomes from bioindicator species 29th Annual Meeting of SETAC-Europe
(Helsínquia, Finland)
2019/05 Phylopeptidomics: optimization for fast detection of cellular organisms in complex samples without any a priori CBRNE Research & Innovation Conference
(Nantes, France)
2018/12/06 La protéomique de nouvelle génération pour la surveillance écotoxicologique des environnements aquatiques
Universidade de Havre (Le Havre, France)
2018/06 The alliance of proteogenomics & multiplexed targeted ecotoxico-proteomics for environmental monitoring of river water quality XII European Proteomics Association (EuPA) congress – Translating genomes into biological functions
(Santiago de Compostela, Spain)
2017/06/29 Protéomique ciblée pour la quantification multiplexée de biomarqueurs protéiques chez le crustacé Gammarus fossarum : perspectives pour la surveillance environmentale Colloque de la Société Française d'Ecotoxicologie Fondamentale et Appliquée
(Lille, France)
2016/09/13 Shotgun proteogenomics & multiplexed proteomics define robust, specific protein biomarkers from non-model species for environmental monitoring SETAC/iEOS Joint Meeting - Environmental and (eco)toxicological Omics and Epigenetics: Science, Technology and Regulatory Applications
(Ghent, Belgium)
2016/09/06 Multiplexed quantitation of protein biomarkers in the invertebrate species Gammarus fossarum : new perspectives for environmental monitoring 30th Congress of the New European Society for Comparative Physiology and Biochemistry
(Barcelona, Spain)
2016/06/29 Development of biomarker genes for endocrine disruption assessment in the non-model crustacean species Gammarus fossarum Colloque de la Société Française d’Ecotoxicologie Fondamentale et Appliquée
(Reims, France)
2016/05 Application of a multiplexed quantitation of protein biomarkers in the invertebrate species Gammarus fossarum : interest to environmental monitoring. 26th Annual Meeting of SETAC-Europe
(Nantes, France)
2015/11/05 Approches moléculaires pour la découverte, le développement et l’application de biomarqueurs chez les gammaridés 2ème Colloque d’Ecophysiologie Animale
(La Rochelle, France)

Supervision

Thesis Title
Role 		Degree Subject (Type)
Institution / Organization
2016/04/01 - 2016/07/06 Evaluation de l’impact de différents pesticides sur la mue et la reproduction chez le crustacé Gammarus fossarum
Supervisor of Alice Cottereau
 Biochimie et Biotechnologies (Master)
Institut National des Sciences Appliquées de Lyon, France

Jury of academic degree

Topic
Role 		Candidate name (Type of degree)
Institution / Organization
2019/11/29 Characterization of biological and metabolic responses to pH changes in a commensal Staphylococcus epidermidis strain
(Thesis) Main arguer
 Susana Isabel Duarte dos Santos (Master)
Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal

Course / Discipline taught

Academic session Degree Subject (Type) Institution / Organization
2020/03 - 2020/04 Bioinformática Sciences de la Vie (Licence) Université de Nîmes, France

Journal scientific committee

Journal title (ISSN) Publisher
2019/01 - Current Environmental Science & Technology (1520-5851) American Chemical Society
2019/01 - Current Environmental Science and Pollution Research (1614-7499) Springer-Verlag
Distinctions

Award

2019 Médaille D'Argent Dufrenoy
Académie d'Agriculture de France, France