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I am a researcher in bioinformatics, protein structure analysis, and machine learning. My work focuses on extracting knowledge from large biological datasets, combining artificial intelligence and molecular modeling approaches. I have experience in applying molecular dynamics simulations to understand protein stability and function. Additionally, I develop predictive models for ligand-protein interactions. I hold two master's degrees in Medicinal Chemistry and Computational Biology, which have provided me with a strong foundation in data science, artificial intelligence, and large-scale biological data analysis.
Identification

Personal identification

Full name
Ana Beatriz Ramos Caniceiro

Citation names

  • Caniceiro, Ana B.

Author identifiers

Ciência ID
431E-AE00-8296
ORCID iD
0000-0002-4074-9142

Email addresses

  • abcaniceiro@cnc.uc.pt (Professional)

Telephones

Mobile phone
  • 967565875 (Personal)

Websites

Knowledge fields

  • Exact Sciences - Computer and Information Sciences - Bioinformatics
  • Exact Sciences - Chemical Sciences

Languages

Language Speaking Reading Writing Listening Peer-review
Portuguese (Mother tongue)
English Upper intermediate (B2) Upper intermediate (B2) Upper intermediate (B2) Upper intermediate (B2) Upper intermediate (B2)
Education
Degree Classification
2025/01/30
Concluded
Machine Learning and Data Science with Python from A to Z (Curso de Especialização Tecnológica)
Major in Machine Learning
Udemy Inc, United States
2021/10/29 - 2024
Ongoing
Programa Doutoral em Biociências (Doutoramento)
Major in Bioquímica
Universidade de Coimbra, Portugal
2020 - 2023/07/11
Concluded
Biologia Computacional (Mestrado)
Major in Biologia Computacional
Universidade de Coimbra Faculdade de Ciencias e Tecnologia, Portugal
"A big data approach to understand mutagenesis effect on the GPCR subfamily A17" (THESIS/DISSERTATION)
17 valores
2022/02/28 - 2022/03/04
Concluded
Experimental design and analysis of multivariate data (Curso de doutoramento (conclusão de unidades curriculares))
Major in Biologia
Universidade de Aveiro Centro de Estudos do Ambiente e do Mar, Portugal
19 valores
2021/02/18 - 2021/05/27
Concluded
Curso de Formação de Inglês para Fins Académicos II (nível intermédio/avançado) (Outros)
Universidade de Coimbra Centro de Línguas da Faculdade de Letras, Portugal
16 valores
2021/03/17 - 2021/05/25
Concluded
Metodologia Qualitativa de Investigação Científica (Outros)
Universidade de Coimbra, Portugal
15 valores
2021/02/22 - 2021/02/26
Concluded
Computational Biology advanced course (Curso de doutoramento (conclusão de unidades curriculares))
Universidade de Coimbra Centro de Neurociências e Biologia Celular, Portugal
18 valores
2020/09/21 - 2021/01/12
Concluded
Curso de Formação de Inglês para Fins Académicos I (Outros)
Universidade de Coimbra Centro de Línguas da Faculdade de Letras, Portugal
17 valores
2017 - 2019/09/25
Concluded
Química Medicinal (Mestrado)
Major in Química Biológica
Universidade de Coimbra Faculdade de Ciencias e Tecnologia, Portugal
"O papel dos halogénios no desenho de fármacos. O caso da ligação de pequenos ligantes à Transtirretina." (THESIS/DISSERTATION)
17 valores
2014 - 2017/07/12
Concluded
Química Medicinal (Licenciatura)
Major in Química Medicinal
Universidade de Coimbra Faculdade de Ciencias e Tecnologia, Portugal
13 valores
2017
Concluded
Curso de Formação Profissional de Inglês Pré-intermédio B1 (Outros)
Tecnisign Coimbra, Portugal
18 valores
Affiliation

Science

Category
Host institution
Employer
2022/05/01 - 2022/10/31 Researcher (Research) Universidade de Coimbra Centro de Neurociências e Biologia Celular, Portugal
Universidade de Coimbra Centro de Neurociências e Biologia Celular, Portugal
2021/04/12 - 2022/04/11 Researcher (Research) Universidade de Coimbra Centro de Neurociências e Biologia Celular, Portugal
Universidade de Coimbra Centro de Neurociências e Biologia Celular, Portugal
2019/09/01 - 2020/12/31 Researcher (Research) Universidade de Coimbra Centro de Química de Coimbra, Portugal
Universidade de Coimbra Departamento de Química, Portugal
Projects

Grant

Designation Funders
2022/05/01 - 2022/10/31 Cutting-Edge Virus-Host Interactome Discovery: A Multi-Omics AI Driven Approach
DSAIPA/DS/0118/2020
Research Fellow
Universidade de Coimbra Centro de Neurociências e Biologia Celular, Portugal
Concluded
2021/04/12 - 2022/04/11 Membrane proteins - development of new computational approaches and its application to G-Protein Coupled Receptors
PTDC/QUI-OUT/32243/2017
Research Fellow
Universidade de Coimbra Centro de Neurociências e Biologia Celular, Portugal
Concluded
2019/09/01 - 2020/12/31 Characterization of the interaction of bioactive compounds with proteins using experimental methodologies, namely nuclear magnetic resonance and isothermal titration calorimetry
UID/QUI/00313/2019
Research Fellow
Universidade de Coimbra Centro de Química de Coimbra, Portugal
Concluded

Contract

Designation Funders
2022/11/01 - Current Pluridimensional signaling of GPCR - understanding mutagenesis effect on the receptorsome
2022.12479.BD
PhD Student Fellow
Universidade de Coimbra Departamento de Ciências da Vida, Portugal
Ongoing
Outputs

Publications

Book chapter
  1. Caniceiro, Ana B.; Orzel, Urszula; Rosário-Ferreira, Nícia; Filipek, Slawomir; Moreira, Irina S.. "Leveraging Artificial Intelligence in GPCR Activation Studies: Computational Prediction Methods as Key Drivers of Knowledge". In Protein Supersecondary Structures, 183-220. Springer US, 2024.
    10.1007/978-1-0716-4213-9_10
Conference poster
  1. Preto, António J.; Caniceiro, Ana B.; Duarte, Francisco; Fernandes, Hugo; Ferreira, Lino; Mourão, Joana; Moreira, Irina S.. "A Data-Driven Approach to Enhancing Cell Penetrating Peptide Uptake Predictions". Paper presented in 2nd BioExcel Conference on Advances in Biomolecular Simulations, 2024.
  2. Preto, António J.; Caniceiro, Ana B.; Duarte, Francisco; Fernandes, Hugo; Ferreira, Lino; Mourão, Joana; Moreira, Irina S.. "Unveiling CPP Behavior Through Machine Learning". Paper presented in Innovative Therapies 4th CiBB Retreat, 2024.
  3. Caniceiro, Ana B.; Bueschbell, Beatriz; Preto, António J.; Barreto, Carlos A.V.; Moreira, Irina S.. "MUG Database: mutational landscape of GPCR subfamily A17 receptors". Paper presented in BioExcel Summer School 2023, 2023.
  4. Caniceiro, Ana B.; Bueschbell, Beatriz; A. J. Preto; Barreto, Carlos A.V.; Moreira, Irina S. "MUTPROT database: a mutation overview of GPCR sub-family A17 receptors". Paper presented in VIII Encontro de Jovens Investigadores de Biologia Computacional Estrutural, 2021.
  5. Pires, Manuel N.; Catarina Marques-Pereira; Pereira, Nádia N.; Caniceiro, Ana B.; Gouveia, Raquel P.; Rosário-Ferreira, Nicia; Moreira, Irina S.. "SARS-CoV-2 membrane protein: from genomic data to structural new insights". Paper presented in VIII Encontro de Jovens Investigadores de Biologia Computacional Estrutural, 2021.
Journal article
  1. Preto, António J.; Caniceiro, Ana B.; Duarte, Francisco; Fernandes, Hugo; Ferreira, Lino; Mourão, Joana; Moreira, Irina S.. "POSEIDON: Peptidic Objects SEquence-based Interaction with cellular DOmaiNs: a new database and predictor". Journal of Cheminformatics 16 1 (2024): http://dx.doi.org/10.1186/s13321-024-00810-7.
    10.1186/s13321-024-00810-7
  2. Caniceiro, Ana B.; Bueschbell, Beatriz; Barreto, Carlos A.V.; Preto, António J.; Moreira, Irina S.. "MUG: A mutation overview of GPCR subfamily A17 receptors". Computational and Structural Biotechnology Journal 21 (2023): 586-600. http://dx.doi.org/10.1016/j.csbj.2022.12.031.
    Published • 10.1016/j.csbj.2022.12.031
  3. Caniceiro, Ana B.; Bueschbell, Beatriz; Schiedel, Anke C.; Moreira, Irina S.. "Class A and C GPCR dimers in neurodegenerative diseases". Current Neuropharmacology 20 (2022): http://dx.doi.org/10.2174/1570159x20666220327221830.
    Published • 10.2174/1570159x20666220327221830
  4. Marques-Pereira, Catarina; Pires, Manuel N.; Gouveia, Raquel P.; Pereira, Nádia N.; Caniceiro, Ana B.; Rosário-Ferreira, Nícia; Moreira, Irina S.. "SARS-CoV-2 Membrane Protein: From Genomic Data to Structural New Insights". International Journal of Molecular Sciences 23 6 (2022): 2986. http://dx.doi.org/10.3390/ijms23062986.
    Published • 10.3390/ijms23062986
  5. Bueschbell, Beatriz; Caniceiro, Ana B.; Suzano, Pedro M.S.; Machuqueiro, Miguel; Rosário-Ferreira, Nícia; Moreira, Irina S.. "Network biology and artificial intelligence drive the understanding of the multidrug resistance phenotype in cancer". Drug Resistance Updates 60 (2022): 100811. http://dx.doi.org/10.1016/j.drup.2022.100811.
    Published • 10.1016/j.drup.2022.100811
Thesis / Dissertation
  1. "A big data approach to understand mutagenesis effect on the GPCR subfamily A17". Master, Universidade de Coimbra Departamento de Ciências da Vida, 2022.
  2. Caniceiro, Ana Beatriz Ramos. "O papel dos halogénios no desenho de fármacos. O caso da ligação de pequenos ligantes à Transtirretina.". Master, 2019. http://hdl.handle.net/10316/87875.
Activities

Oral presentation

Presentation title Event name
Host (Event location)
2023/12/18 Bridging Quantitative Database Insights with Machine Learning for CPPs 3D-BioInfo-PT Annual Meeting 2023
3D-BioInfo-PT The Portuguese Community of Structural Bioinformatics Researches (Coimbra, Portugal)
2023/03/16 MUG: A mutation overview of GPCR subfamily A17 receptors XII Bioinformatics Open Days
(Braga, Portugal)
2022/05/04 An overview of mutations distribution within GPCR sub-family A17 in one database - MUG database BioData.pt TALKS
BioData.pt (Portugal)

Event organisation

Event name
Type of event (Role)
Institution / Organization
2023/06/15 - 2023/12/19 Event consisting of three workshops and one annual meeting. One of the highlighted events is the 2nd Annual Meeting of 3D-BioInfo-PT, which builds upon the success of the previous Young Researchers Meeting in Structural Computational Biology (EJIBCE), held eight times since 2013. The first workshop is scheduled for June 15-16, followed by the second workshop in September, and concluding with the third workshop and the annual meeting in December, totaling five days of activities. (2023/12/18 - 2023/12/18)
Meeting (Member of the Organising Committee)
Universidade de Coimbra Departamento de Ciências da Vida, Portugal
2018/09/09 - 2018/09/14 Collaboration in the organization and execution of the XXVI Ibero-American Congress on Catalysis during its duration. (2018/09/09 - 2018/09/14)
Congress (Member of the Organising Committee)
Sociedade Portuguesa de Química, Portugal

Universidade de Coimbra, Portugal
2017/04/22 - 2017/04/22 Collaboration in the organization and execution of the 2017 Junior Chemistry Olympiad, during the competition day. (2017/04/22 - 2017/04/22)
Call (Member of the Organising Committee)
Sociedade Portuguesa de Química, Portugal

Universidade de Coimbra Departamento de Química, Portugal
2017/04/07 - 2017/04/10 Collaboration in the organization of the V National Meeting of Chemistry Students (V ENEQUI), organized by the Student Chemistry Association of the Academic Association of Coimbra (NEQ/AAC) in partnership with the National Association of Chemistry Students (ANEQ). (2017/04/07 - 2017/04/10)
Meeting (Co-organisor)
Universidade de Coimbra, Portugal

Event participation

Activity description
Type of event
Event name
Institution / Organization
2024/12/20 - 2024/12/20 Participation in the 3rd Annual Meeting of 3D-BioInfo-PT, in Lisbon, with the presentation of the scientific poster "Utilizing Artificial Intelligence for GPCR Activation State Prediction: A Computational Perspective".
Meeting
3rd Annual Meeting 3D-BioInfo-PT
Fundação da Faculdade de Ciências da Universidade de Lisboa, Portugal
2024/10/20 - 2024/10/24 Participation in the "2nd BioExcel Conference on Advances in Biomolecular Simulations", in Brno, Czech Republic, presenting a scientific poster ("A Data-Driven Approach to Enhancing Cell-Penetrating Peptide Uptake Predictions".)
Conference
2nd BioExcel Conference on Advances in Biomolecular Simulations
Bioexcel Publishing Limited, United Kingdom
2024/09/27 - 2024/09/27 Participation in the "Innovative Therapies 4th CiBB Retreat", presenting a scientific poster ("Unveiling CPP Behavior Through Machine Learning".)
Meeting
Innovative Therapies 4th CiBB Retreat
Universidade de Coimbra Centro de Inovação em Biomedicina e Biotecnologia, Portugal
2023/09/10 - 2023/09/15 Participation in the BioExcel Summer School 2023, presenting a scientific poster.
Other
BioExcel Summer School 2023
Sardegna Ricerche, Italy
2023/05/15 - 2023/05/15 Instructor for a workshop for students from the Department of Life Sciences at the University of Coimbra.
Workshop
Ciclo de Workshops na Área da Biologia Computacional
Universidade de Coimbra Departamento de Ciências da Vida, Portugal
2023/02/11 - 2023/02/11 Participation in MAKE IT.
Call
MAKE IT
Millennium bcp, Portugal
2022/12/20 - 2022/12/20 Instructor for an intermediate-level workshop for the 3D-BioInfo-PT community.
Workshop
3D-BioInfo-PT
Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica António Xavier, Portugal
2021/12/21 - 2021/12/22 Workshop on "Computational Structural Biology Tools": A two-day workshop that introduced a robust computational pipeline for in silico characterization of protein ligands, addressing one of the most pressing biological challenges today (SARS-CoV-2).
Workshop
Computational Structural Biology Tools workshop
BioData.pt, Portugal
2021/12/20 - 2021/12/20 Participation on "VIII Encontro de Jovens Investigadores de Biologia Computacional Estrutural".
Conference
VIII EJIBCE
BioData.pt, Portugal
2021/11/23 - 2021/11/23 Training on the use of PyMOL software.
Workshop
Formação de PyMOL
Núcleo de Bioquímica do Porto, Portugal
2021/11/17 - 2021/11/17 Webinar on how to programmatically access UniProt using Python.
Seminar
Programmatic access to UniProt using Python webinar
European Bioinformatics Institute, United Kingdom
2021/10/19 - 2021/10/19 GROMACS Workshop, focused on molecular dynamics simulations.
Workshop
GROMACS Workshop
BioData.pt, Portugal
2021/05/05 - 2021/05/08 Participation in the X Bioinformatics Open Days congress.
Congress
X Bioinformatics Open Days
Universidade do Minho, Portugal
2021/04/12 - 2021/04/14 Participation in the "4th Ernest" conference.
Conference
4th European Research Network on Signal Transduction Conference
2021/03/31 - 2021/03/31 Mini-course on computational methods for protein studies.
Symposium
I Simpósio Online Maranhense de Bioinformática
Universidade Estadual do Maranhão, Brazil
2020/11/25 - 2020/11/25 Webinar on opportunities and challenges in large biological systems, including: how atomic properties manifest in NMR spectra; how to use 19F, 13C, and 2H selective labeling to map structural features; the concepts of CSA and TROSY effects; new 19F-NMR experimental approaches for understanding biomolecular functions.
Seminar
Harnessing 19F as an agent in bio-NMR of large systems
SelectScience, United Kingdom
2019/12/18 - 2019/12/19 HADDOCK Workshop, focusing on information-driven modeling of biomolecular complexes. This was a satellite workshop of the 2019 Young Researchers Meeting in Structural Computational Biology, led by Professor Alexandre Bonvin (Utrecht University, Netherlands), including lectures and hands-on computational sessions on HADDOCK and related modeling tools.
Workshop
Workshop Haddock
Universidade de Coimbra, Portugal
2019/11/06 - 2019/11/07 Event featuring presentations from companies in the fields of Chemistry and Medicinal Chemistry, as well as lectures on: Entrepreneurship and scientific research; curriculum development and job interviews; scientific careers and motivational talks; participation as an attendee and active participant.
Congress
VII Feira de Emprego e Empreendedorismo do Departamento de Química
Núcleo de Estudantes de Química da Associação Académica de Coimbra, Portugal

Universidade de Coimbra Departamento de Química, Portugal
2019/10/18 - 2019/10/18 Lecture by Professor Hartmut Luecke (University of Oslo) on Cryo-EM and its application in studying large protein complexes. Discussion on methodological advancements in Cryo-EM, culminating in its 2017 Nobel Prize in Chemistry.
Seminar
Cryo-EM: What´s all the fuss about?
Universidade de Coimbra Departamento de Química, Portugal
2019/04/29 - 2019/04/29 Workshop on Mestrenova, a software for spectral data analysis.
Workshop
Workshop em Mestrenova
Molecular JE, Portugal
2019/02/20 - 2019/02/21 Participation in the IV Scientific Meeting of NEQ/AAC, focused on Green Chemistry. The event featured invited talks, oral presentations, plenary sessions, and motivational lectures, showcasing scientific projects from Portuguese universities and research institutes.
Meeting
IV Encontro Científico do NEQ/AAC - Química Verde: um repensar da Química
Núcleo de Estudantes de Química da Associação Académica de Coimbra, Portugal
2019/01/29 - 2019/01/29 Workshop on Drug Discovery Strategies, consisting of five lectures on different research areas in Medicinal Chemistry, showcasing ongoing research projects and results.
Workshop
Estratégias de Descoberta de Fármacos
Universidade de Coimbra Departamento de Química, Portugal
2018/11/13 - 2018/11/14 Event featuring presentations from Chemistry and Medicinal Chemistry companies, alongside lectures on patents, curriculum development, job interviews, and entrepreneurship. Participation as an attendee and active participant.
Congress
VI Feira de Emprego e Empreendedorismo do Departamento de Química
Núcleo de Estudantes de Química da Associação Académica de Coimbra, Portugal

Universidade de Coimbra Departamento de Química, Portugal
2018/04/10 - 2018/04/10 Participation in the "A Química do Empreendedorismo" event, structured into three panels featuring small and large companies, showcasing entrepreneurship case studies and providing opportunities for knowledge exchange and idea-sharing.
Conference
A Química do Empreendedorismo
Núcleo de Estudantes de Química da Associação Académica de Coimbra, Portugal

Académica Start UC, Portugal
2018/02/21 - 2018/02/22 Participation in the III Scientific Meeting of NEQ/AAC, an event featuring invited talks, oral presentations, plenary sessions, and motivational lectures, aimed at presenting scientific projects conducted in Portuguese universities and research institutes.
Meeting
III Encontro Científico do NEQ/AAC - Encontra-te com a Química!
Núcleo de Estudantes de Química da Associação Académica de Coimbra, Portugal
2017/10/25 - 2017/10/26 Event consisting of presentations from companies in the fields of Chemistry and Medicinal Chemistry, as well as lectures on entrepreneurship case studies, curriculum development, job interviews, and motivational talks. Participation as an attendee and active participant.
Congress
V Feira de Emprego e Empreendedorismo do Departamento de Química
Núcleo de Estudantes de Química da Associação Académica de Coimbra, Portugal

Universidade de Coimbra Departamento de Química, Portugal
2017/02/15 - 2017/02/16 Event featuring presentations from Chemistry and Medicinal Chemistry companies, alongside lectures on patents, curriculum development, job interviews, and entrepreneurship. Participation as an attendee and active participant.
Congress
IV Feira de Emprego e Empreendedorismo do Departamento de Química
Núcleo de Estudantes de Química da Associação Académica de Coimbra, Portugal

Universidade de Coimbra Departamento de Química, Portugal
2016/03/18 - 2016/03/20 Participation in the "IV Encontro Nacional de Estudantes de Química", held at the University of Porto.
Meeting
IV Encontro Nacional de Estudantes de Química
Universidade do Porto - Núcleo de Química do Porto, Portugal
2016/02/25 - 2016/02/26 Event featuring presentations from companies in Chemistry, Biochemistry, and Medicinal Chemistry, along with entrepreneurship case studies and motivational lectures. Participation as an attendee and active participant.
Congress
III Feira de Emprego e Empreendedorismo do Departamento de Química
Núcleo de Estudantes de Química da Associação Académica de Coimbra, Portugal

Universidade de Coimbra Departamento de Química, Portugal
2015/10/20 - 2015/10/20 Extracurricular course on ChemDraw, a software for drawing molecular structures, mechanisms, and predicting chemical properties of a wide range of compounds.
Workshop
Workshop de Chemdraw
Núcleo de Estudantes de Química da Associação Académica de Coimbra, Portugal
2015/02/25 - 2015/02/25 Event focused on lectures about the role of chemists in the business and industrial sectors, alongside knowledge-sharing and motivational sessions. Participation as an attendee and active participant.
Congress
II Feira de Emprego e Empreendedorismo do Departamento de Química
Núcleo de Estudantes de Química da Associação Académica de Coimbra, Portugal

Universidade de Coimbra Departamento de Química, Portugal
2011/04/02 - 2011/04/02 Participation in the 2011 Junior Chemistry Olympiad competition, alongside two colleagues.
Call
Olimpíadas de Química Junior
Sociedade Portuguesa de Química, Portugal

Universidade de Coimbra Departamento de Química, Portugal

Association member

Society Organization name Role
2018 - 2019 Núcleo de Estudantes de Química da Associação Académica de Coimbra Secretária da Mesa de Plenário
2016 - 2018 Núcleo de Estudantes de Química da Associação Académica de Coimbra Coordenadora do pelouro da cultura
2015 - 2016 Núcleo de Estudantes de Química da Associação Académica de Coimbra Colaboradora do pelouro da cultura
Distinctions

Award

2024 PRÉMIO UC-LIFE SCIENCES – BIOCHEMISTRY
Universidade de Coimbra Departamento de Ciências da Vida, Portugal