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Margarida Gama-Carvalho is an academic researcher with ~25y experience in undergrad and post-grad training. She holds a BSc degree in Biology by the Faculty of Sciences of the University of Lisbon (1994) and an PhD in Biomedical Sciences by the Faculty of Medicine of Lisbon, where she was a faculty member between 1996 and 2010. Since 2011 she is tenured Assistant Professor at the Department of Chemistry and Biochemistry of the Faculty of Sciences, University of Lisbon and is currently the Coordinator of the MSc Program in Biochemistry and Biomedicine. She also held visiting post-doctoral scientist appointments at the Dana Farber Cancer Institute, in Boston (USA; 2003-2004), visiting Assistant Professor at the Department of Cell Biology, Harvard Medical School (2016) and Honorary Professor appointment at the School of Biomedical Engineering, University of Technology Sydney (Australia). Since 2015 Margarida Gama-Carvalho is the Principal Investigator of the RNA Systems Biology Lab at the BioSystems and Integrative Sciences Institute ¿ BioISI, a multi-disciplinary research unit of the Faculty of Sciences, where she is also a member of the executive board and coordinator of the Genomics Facility. She is also responsible for the technical direction of the Ciências Testing Center that was established during the COVID-19 pandemic. Margarida Gama-Carvalho has 52 publications in refereed journals receiving ~1000 citations in total. Since becoming established as an independent group leader in 2009 Margarida Gama-Carvalho has been the lead PI or researcher in 12 competitively funded grants, including 2 grants from the EU Commission, and one from EU Joint Programs. She received the first L¿Oreal-Portugal Honor Medal for Women in Science in 2004 and was awarded the 2023 Gilead Génese Research award for her work in virology. Margarida Gama-Carvalho has successfully supervised seven PhD students In Biomedicine and Systems Biology and am currently supervising four. She has also mentored 8 post-doctoral fellows, as well as 20 MSc students in the fields of Molecular Biology and Genetics, Microbiology/infectious diseases, Biochemistry, Neurosciences, Bioinformatics from the Faculty of Sciences and the Faculty of Medicine of the University of Lisbon as main advisor, and more than 25 MSc students as internal advisor. Her research interests focus on the study of RNA-dependent post-transcriptional regulatory networks in vertebrates, including regulation by microRNAs and other non-coding RNAs and mechanisms of regulation of splicing, stability and translation of mRNA. She is particularly interested in the mechanisms of diseases associated with RNA metabolism and in the development of RNA-based therapeutic applications, with emphasis on the immune system and host-pathogen interactions (mainly HIV infection); and on motor neuron and neurodegenerative diseases. Her major area of expertise is in the cellular and molecular biology of RNA processing and metabolism, with strong emphasis on the application of transcriptomic and bioinformatics methods, including the integrated use of large-scale data from multiple 'omics' platforms and computational modelling, as well as the development of methods and application of 3rd and 4th generation sequencing technologies for diagnostics and research. She has presented >100 communications at meetings and conferences, including invited lectures, is a member of several national and international scientific societies, and a member of the editorial board of the journal BMC Genomics.
Identification

Personal identification

Full name
Margarida Henriques da Gama Carvalho

Citation names

  • Carvalho, Margarida
  • Gama-Carvalho, Margarida

Author identifiers

Ciência ID
4710-D955-1EAB
ORCID iD
0000-0002-0365-6916
Google Scholar ID
https://scholar.google.com/citations?user=SUpE2GIAAAAJ&hl=pt-PT
Researcher Id
E-6180-2012
Scopus Author Id
6602645433

Email addresses

  • mhcarvalho@ciencias.ulisboa.pt (Professional)

Knowledge fields

  • Natural sciences - Biological Sciences - Molecular Biology
  • Exact Sciences - Computer and Information Sciences - Bioinformatics
  • Medical and Health Sciences - Basic Medicine - Immunology
  • Medical and Health Sciences - Basic Medicine - Neurosciences
  • Medical and Health Sciences - Basic Medicine - Human Genetics
  • Natural sciences - Biological Sciences - Biochemistry
  • Natural sciences - Biological Sciences - Cell Biology
  • Natural sciences - Biological Sciences - Developmental Biology
  • Natural sciences - Biological Sciences - Virology
  • Medical and Health Sciences - Medical Biotechnology - Gene-based Diagnostics and Therapeutic Interventions

Languages

Language Speaking Reading Writing Listening Peer-review
English Advanced (C1) Advanced (C1) Advanced (C1) Advanced (C1)
French Intermediate (B1) Advanced (C1) Intermediate (B1) Intermediate (B1)
Spanish; Castilian Intermediate (B1) Advanced (C1) Beginner (A1) Intermediate (B1)
Education
Degree Classification
2003
Concluded
Ciências Biomédicas (Doutoramento)
Universidade de Lisboa Faculdade de Medicina, Portugal
"Nuclear compartmentalization of splicing factors: Characterisation of molecular signals and role in alternative splicing regulation" (THESIS/DISSERTATION)
20
2000
Concluded
Provas de Aptidão Pedagógica e Capacidade Científica (Outros)
Universidade de Lisboa Faculdade de Medicina, Portugal
"Detecção de mRNAs virais por hibridação in situ com oligonucleótidos" (THESIS/DISSERTATION)
Distinção por Unanimidade
1994/07
Concluded
Biologia (Licenciatura)
Universidade de Lisboa Faculdade de Ciências, Portugal
17
Affiliation

Teaching in Higher Education

Category
Host institution
Employer
2011/07/01 - Current Assistant Professor (University Teacher) Universidade de Lisboa Faculdade de Ciências, Portugal
2003/03/30 - 2011/06/30 Assistant Professor (University Teacher) Universidade de Lisboa - Faculdade de Medicina, Portugal
2000/07/26 - 2003/03/29 Assistant (University Teacher) Universidade de Lisboa - Faculdade de Medicina, Portugal
1996/11/01 - 2000/07/25 Trainee Assistant (University Teacher) Universidade de Lisboa - Faculdade de Medicina, Portugal

Positions / Appointments

Category
Host institution
Employer
2023/07/31 - Current Coordenador do 2º Ciclo em Bioquímica e Biomedicina Universidade de Lisboa Faculdade de Ciências, Portugal

Others

Category
Host institution
Employer
1995/01/01 - 1996/10/31 Bolseira de Investigação, Programa Praxis XXI Junta Nacional de Investigação Científica e Tecnológica (JNICT), Portugal
Centro de Biologia e Patologia Molecular, Faculdade de Medicina da Universidade de Lisboa, Portugal
Projects

Grant

Designation Funders
2024/01/01 - 2025/12/31 miThic-eSwitch - MicroRNA - specific targeting of HIV latently infected cells using virus-dependent dCas9 control switches
CC1268
Principal investigator
BioISI - Instituto de Biosistemas e Ciências Integrativas, Portugal
Gilead Sciences Lda
Ongoing
2010/07/01 - 2013/06/30 AIDS and miRNAs
FP7-PEOPLE-2009-RG 256595
Supervisor
2010/11 - 2011/10 Caracterização de reguladores pós-transcricionais do gene SMN2
Bolsa Fundação MSD
Bolsa Fundação MSD
Supervisor
N/A
Concluded
2005/04 - 2008/06 Cell Bio of messenger RNA biogenesis Fundação para a Ciência e a Tecnologia, I.P.

Contract

Designation Funders
2020/09/11 - 2023/09/10 Understanding the responses of fetal muscle stem cells and myoblasts to their niche in a mouse model for LAMA2-CMD
Universidade de Lisboa Centro de Ecologia Evolução e Alterações Ambientais, Portugal

Universidade de Lisboa Faculdade de Ciências, Portugal

Universidade do Porto Instituto de Investigação e Inovação em Saúde, Portugal
AFM-Téléthon
Ongoing
2020 - 2023 REACT: Risco e Resiliência: Respostas Adaptáveis à COVID19 em Testagem
LISBOA-01-0145-FEDER-072548
Researcher
2022/01/01 - 2022/12/31 microRNA-based cell-type specific targeting of Cas9 complexes for therapeutic purposes
EXPLBTM-ORG09822021
Principal investigator
FCiênciasID Associação para a Investigação e Desenvolvimento de Ciências, Portugal

BioISI - Instituto de Biosistemas e Ciências Integrativas, Portugal
Fundação para a Ciência e a Tecnologia
Ongoing
2018 - 2022 Fire4CAST: Fitting Immunocytometry and RNA-technologies for Epidemiological Modeling of Fire Blight
PTDC/ASP-PLA/28305/2017
Researcher
Concluded
2018 - 2022 Microenvironmental effects on alternative splicing in malignant progression of colorectal tumor cells
PTDC/BIA-MOL/28386/2017
Researcher
2018/10/01 - 2021/09/30 miRiAD - Exploring the role of microRNAs in T cell function and anti-HIV defense
PTDC/BIA-CEL/29257/2017
PTDC/BIA-CEL/29257/2017
Principal investigator
BioISI - Instituto de Biosistemas e Ciências Integrativas, Portugal
Fundação para a Ciência e a Tecnologia
Ongoing
2017/02/01 - 2021/04/30 Redes sinápticas e abordagens compreensivas de medicina personalizada em doenças neurocomportamentais ao longo da vida
SAICTPAC/0010/2015
Universidade de Aveiro, Portugal

Universidade do Minho, Portugal

Universidade de Coimbra, Portugal
Fundação para a Ciência e a Tecnologia
Ongoing
2017/01/02 - 2020/12/30 LungCARD “Blood test for clinical therapy guidance of non-small cell lung cancer patients”
H2020-MSCA-RISE-2016 #734790
H2020-MSCA-RISE-2016 #734790
Researcher
N/A
Ongoing
2017/01 - 2019/12 Synaptic networks and Personalized Medicine Approaches to Understand Neurobehavioural Diseases Across the Lifespan
PAC-03/SAICT/2015
Researcher
European Commission
2016/05/01 - 2019/10/31 Nonsense-mediated mRNA decay in genetic diseases and cancer: key players, mechanisms, and a novel approach for suppression therapy
PTDC/BIM-MEC/3749/2014
PTDC/BIM-MEC/3749/2014
Researcher
N/A
Concluded
2015/05 - 2018/04 Common RNA-dependent pathways for motor-neuron degeneration in spinocerebellar muscular atrophy and amyotrophic lateral sclerosis
JPND_CD_FP-688-085
JPND_CD_FP-688-085
Principal investigator
Stichting Weten
Concluded
2011/11/08 - 2014/11/07 MODULATION OF HIV REPLICATION AND LATENCY IN HUMAN CD4 T CELLS BY REGULATORY SMALL RNAS
Merck LKR 101361
Merck LKR 101361
Principal investigator
Merck & Co Inc
2012/03 - 2014/08 Regulation of mRNA metabolism by the U2AF and PTB splicing factors - novel mechanisms for the coordination of gene expression?
PTDC/BIA-BCM/118434/2010
PTDC/BIA-BCM/118434/2010
Principal investigator
Fundação para a Ciência e a Tecnologia, I.P.
Concluded
2011/01/01 - 2013/12/31 Strategic Project - UI 4046 - 2011-2012
PEst-OE/BIA/UI4046/2011
Instituto Nacional de Saúde Doutor Ricardo Jorge, Portugal

Universidade do Minho, Portugal

Universidade do Algarve, Portugal

Fundação da Faculdade de Ciências da Universidade de Lisboa, Portugal
Fundação para a Ciência e a Tecnologia
Concluded
2010/02 - 2013/07 Searching for RNA regulators that control the segmentation clock
PTDC/BIA-BCM/101282/2008
PTDC/BIA-BCM/101282/2008
Researcher
Fundação para a Ciência e a Tecnologia, I.P.
Concluded
2009/03/01 - 2011/02/28 Characterization of post-transcriptional regulatory mechanisms of SMN2
SMA-EUROPE 2008 / PROJECT N° 13185
SMA-EUROPE 2008 / PROJECT N° 13185
Principal investigator
N/A
Concluded
2005/04 - 2008/06 EURODYNA 2004-03: Cell biology of messenger RNA biogenesis
info:eu-repo/grantAgreement/SNSF/Project funding/31DY30-108704/CH
EuroDyna Project 03-DYNA-F-03
Schweizerischer Nationalfonds zur Förderung der wissenschaftlichen Forschung
Concluded
Outputs

Publications

Book chapter
  1. Jordan, Peter; Gonçalves, Vânia; Fernandes, Sara; Marques, Tânia; Pereira, Marcelo; Gama-Carvalho, Margarida. "Networks of mRNA Processing and Alternative Splicing Regulation in Health and Disease". In Advances in Experimental Medicine and Biology, 1-27. Springer International Publishing, 2019.
    Published • 10.1007/978-3-030-19966-1_1
  2. Gama-Carvalho, Margarida. "How Can Photo Sharing Inspire Sharing Genomes?". 2017.
    10.1007/978-3-319-60816-7_10
  3. Do Souto, Laura; Gonzalez-Briones, Alfonso; Amaral, Andreia J.; Gama-Carvalho, Margarida; De Paz, Juan F.. "Large-Scale Transcriptomic Approaches for Characterization of Post-Transcriptional Control of Gene Expression". 109-119. 2016.
    10.1007/978-3-319-40126-3_12
Conference abstract
  1. Lopes, Mariana; Louzada, Sandra; Ferreira, Daniela; Torres, V.; Gama-Carvalho, Margarida; Chaves, Raquel. "Overexpressed human satellite 1A noncoding RNA is a central player in microtubule dynamics". Paper presented in EMBO/EMBL Symposia: The Non-Coding Genome, 2023.
    Published
  2. Lopes, Mariana; Sandra Louzada; Ferreira, Daniela; Gabriela Verissímo; Gama-Carvalho, Margarida; Chaves, Raquel. "Seeing is believing: transcription profiling of Human Satellite 1". Paper presented in III International Meeting of the Portuguese Society of Genetics, Évora, 2022.
    Published
Conference paper
  1. Barros, Patrícia; Amaral, Andreia; Abrantes, Leonor; Oliveira, Tiago; Louro, Henriqueta; Silva, Maria João; Jordan, Peter; Gama-Carvalho, Margarida; Matos, Paulo. "Stimulation of RAC1/PAK1 signalling upregulates DNA damage repair genes via STAT5 stimulation of BCL6 repressed loci". 2017.
  2. Barros, Patrícia; Amaral, Andreia; Abrantes, Leonor; Oliveira, Tiago; Lourio, Henriqueta; Silva, Maria João; Jordan, Peter; Gama-Carvalho, Margarida; Matos, Paulo. "Activation of RAC1/PAK1 axis potentiates transcriptional upregulation of DNA damage response genes via the BCL6/STAT5 switch". 2017.
  3. Gonçalves, Vânia; Henriques, Andreia; Pereira, Joana; Neves-Costa, Ana; Moyer, Pat; Ferreira Moita, Luís; Gama-Carvalho, Margarida; Matos, Paulo; Jordan, Peter. "Alternative splicing of tumour-related Rac1b in colorectal cells is regulated by protein phosphorylation of splicing factor SRSF1". 2014.
Conference poster
  1. Luta, Raquel; Ruivinho, Carolina; Amaral, Andreia J.; Ana Espada de Sousa; Gama-Carvalho, Margarida. Corresponding author: Luta, Raquel. "Investigating the Role of Novel Candidate HIV Viral miRNAs in Infection". Paper presented in IV International Meeting of the Portuguese Society of Genetics, 2023.
  2. Silva, Patrick; Santana, Magda M.; Pinto, Maria M.; Gaspar, Laetitia; Nobre, Rui Jorge; Duarte, Sónia; Marques, Tânia M.; et al. "Discriminating spinocerebellar ataxia type 3 ataxic mutation carriers from control and preataxic through miRNA expression profiles in plasma-derived extracellular vesicles". Paper presented in he Non- Coding Genome Symposium, 2023.
  3. Noronha-Estima, Cláudia; Marques, Madalena; Oliveira, Gil; Sousa, Ana Espada; Gama-Carvalho, Margarida. "Dissecting the role of miR-34c-5p in Human CD4+ T cells". Paper presented in XLVIII SPI Annual Meeting 2023, 2023.
  4. Noronha-Estima, Cláudia; Marques, Madalena; Oliveira, Gil; B. Farias, Guilherme; Sousa, Ana Espada; Gama-Carvalho, Margarida. "The impact of miR-34c-5p on the transcriptome of Human CD4+ T cells". Paper presented in RNA in Disease - IX ptRNA meeting, 2023.
  5. Ruivinho, Carolina; Amaral, Andreia J.; Ana Espada de Sousa; Gama-Carvalho, Margarida. "Functional characterization of putative miRNA-like sequences encoded in the HIV genome". Paper presented in 2nd Chem & Biochem Students Meeting, 2022.
  6. Estima, Cláudia; Marques, Madalena; Godinho-Santos, Ana; Conceição, Carolina M; Ribeiro, Ruy M.; Ana Espada de Sousa; Gama-Carvalho, Margarida. "Modulation of HIV-1 replication and latency by miR-34c-5p". Paper presented in III International meeting of the Portuguese Society of Genetics, 2022.
  7. Santos, Lúcia; Nascimento, Rui; Duarte, Aires; Patrick T. Harrison; Gama-Carvalho, Margarida; Carlos M. Farinha. "Transcriptomic and proteomic analysis identify changes associated with several prototypical cystic fibrosis-causing mutations". Paper presented in 17th ECFS Basic Science Conference, 2022.
  8. Magalhães, L; Alcobia, I; Proa, Vitor; Gomes, E; Gama-Carvalho, Margarida; Neves, Hélia. "Identification of key moecular players in thymus development.". Paper presented in 10ª Edição-Dia da Investigação, Faculdade de Medicina da Universidade de Lisboa, Lisboa. 15 Dez., 2021.
  9. Martins, Susana G; Gameiro dos Santos, Pedro; Cordero, G.A.; Melo, Catarina; Ribeiro, Vanessa; Antunes, Inês; Saget, Bérénice; et al. "LAMA2 congenital muscular dystrophy: the road to unravel the disease onset". Paper presented in Ciências Research Day 2021, 2021.
  10. Gibson, Mark S; Godinho-Santos, Ana; Estima, Cláudia; Marques, Tânia M; Paulo-Pedro, Margarida; Ana E Sousa; Gama-Carvalho, Margarida. "Regulation of naive CD4+ T cells by miR-34c-5p". Paper presented in 26th Annual Meeting of the RNA Society - RNA 2021, 2021.
  11. Lopes, Mariana; Escudeiro, Ana; Adega, Filomena; Gama-Carvalho, Margarida; Chaves, Raquel. "Mapping Human Satellite I, an intervenient in Robertsonian Translocations". 2020.
  12. Lopes, Mariana; Escudeiro, Ana; Adega, Filomena; Sandra Louzada; Dias, Ricardo; Gama-Carvalho, Margarida; Chaves, Raquel. "Filling the gaps: disclosure of the human centromere in Robertsonian translocated chromosomes using Nanopore sequencing". Paper presented in GenomePT symposium, 2019.
  13. Lopes M.; Escudeiro A.; Adega F.; Gama-Carvalho, Margarida; Chaves, Raquel. "Breaking down human satellite DNA and its ncRNAs in proliferative cells". Paper presented in XI Genetics and Biotechnology Conference/ I Genetics and Biotechnology Iberian Conference, 2019.
  14. Lopes, Mariana; Gama-Carvalho, Margarida; Chaves, Raquel. "High Resolution Melting ¿ HRM ¿ can be used to optimize primers for Nanopore Sequencing". Paper presented in Workshop ¿ Innovation in Genomic Technologies, 2018.
  15. Matos, Ana Margarida; Foxall, Russell B; Amaral, Andreia J.; Andrade, Jorge; Matoso, Paula; Santa-Marta, Mariana; Tendeiro, Rita; et al. "miR-34c-5p at the crossroads of human naive CD4 T-cell activation and HIV infection". Paper presented in Molecular Biology in Portugal and EMBL (and EMBL alumni meeting), 2013.
  16. Fernandes, Ana Miguel; Gomes, Ana Luísa; Oliveira, Mariana; Costa, Gonçalo; Peixeiro, Isabel; Matos, Ana Margarida; Cordeiro, Carlos; Gama-Carvalho, Margarida. "Post-transcriptional regulation of SMN2 expression by hnRNP G and LARP Family proteins". Paper presented in RNA 2013 Davos, 2013.
  17. Andrade, Jorge; Amaral, Andreia J.; Matos, Ana Margarida; Santa-Marta, M; Matoso, Paula; Soares, Rui; Foxall, Russell B; et al. "Novel species of tRNA derived small-RNAs are specifically induced in T cells in response to HIV infection". Paper presented in FEBS International Workshop, "New Developments in RNA Biology", 2012.
  18. Amaral, Andreia J.; Andrade, Jorge; Matos, Ana Margarida; Matoso, Paula; Soares, Rui; Foxall, Russell B; Tendeiro, Rita; et al. "Deep-sequencing profile of small ncRNAs in human CD4+ T cells upon TCR-mediated activation and its modulation by HIV infection". Paper presented in FEBS International Workshop, "New Developments in RNA Biology", 2012.
  19. Matos, Ana Margarida; Andrade, Jorge; Amaral, Andreia J.; Santa-Marta, M; Serra-Caetano, Ana; Foxall, Russell B; Matoso, Paula; et al. "A role for miR-34c-5p in T-cell activation and response to HIV infection". Paper presented in FEBS International Workshop, "New Developments in RNA Biology", 2012.
  20. Soares, Rui S.; Amaral, Andreia J.; Gama-Carvalho, Margarida; Ana Espada de Sousa. "Profiling the effect of cell activation in the microRnome of human CD4+ T-cells". Paper presented in The Non Coding Genome Meeting, Heidelberg, Germany, 2010.
  21. Amaral, Andreia J.; Soares, Rui S.; Gama-Carvalho, Margarida; Goncalves, Joao; Ana Espada de Sousa. "Profiling microRNA expression during human CD4+ T-cell activation". Paper presented in ESF, Next Generation Sequencing Meeting, Leiden, Netherlands, 2010.
Journal article
  1. McGuire, Daniel; Costa, Telma; Tenreiro, Ana; Cruz, Joana; Sousa, Rui; de Sousa, Miguel Leão; Martins, Carmo; et al. "Use of immuno-flow cytometry and real-time PCR disclose the epidemiological behaviour of Erwinia amylovora populations during the winter in Portuguese pear orchards". Journal of Plant Pathology (2024): http://dx.doi.org/10.1007/s42161-023-01561-4.
    Published • 10.1007/s42161-023-01561-4
  2. Garcia-Vaquero, Marina L.; Heim, Marjorie; Flix, Barbara; Pereira, Marcelo; Palin, Lucile; Marques, Tânia M.; Pinto, Francisco R.; et al. "Analysis of asymptomatic Drosophila models for ALS and SMA reveals convergent impact on functional protein complexes linked to neuro-muscular degeneration". BMC Genomics 24 1 (2023): http://dx.doi.org/10.1186/s12864-023-09562-4.
    10.1186/s12864-023-09562-4
  3. Lim, Stephanie H.; Chua, Wei; Ng, Weng; Ip, Emilia; Marques, Tania M.; Tran, Nham T.; Gama-Carvalho, Margarida; et al. "Circulating Tumour Cell Associated MicroRNA Profiles Change during Chemoradiation and Are Predictive of Response in Locally Advanced Rectal Cancer". Cancers 15 16 (2023): 4184. http://dx.doi.org/10.3390/cancers15164184.
    10.3390/cancers15164184
  4. Ruivinho, Carolina; Gama-Carvalho, Margarida. "Small non-coding RNAs encoded by RNA viruses: old controversies and new lessons from the COVID-19 pandemic". Frontiers in Genetics 14 (2023): http://dx.doi.org/10.3389/fgene.2023.1216890.
    10.3389/fgene.2023.1216890
  5. García-Moreno, Juan F.; Lacerda, Rafaela; da Costa, Paulo J.; Pereira, Marcelo; Gama-Carvalho, Margarida; Matos, Paulo; Romão, Luísa. "DIS3L2 knockdown impairs key oncogenic properties of colorectal cancer cells via the mTOR signaling pathway". Cellular and Molecular Life Sciences 80 7 (2023): http://dx.doi.org/10.1007/s00018-023-04833-5.
    10.1007/s00018-023-04833-5
  6. Ana Cruz-Silva; Gonçalo Laureano; Marcelo Pereira; Ricardo Dias; José Moreira da Silva; Nuno Oliveira; Catarina Gouveia; et al. "A New Perspective for Vineyard Terroir Identity: Looking for Microbial Indicator Species by Long Read Nanopore Sequencing". Microorganisms (2023): https://doi.org/10.3390/microorganisms11030672.
    10.3390/microorganisms11030672
  7. Lopes M; Louzada S; Ferreira D; Veríssimo G; Eleutério D; Gama-Carvalho M; Chaves R. "Human Satellite 1A analysis provides evidence of pericentromeric transcription.". BMC biology (2023): http://europepmc.org/abstract/med/36755311.
    10.1186/s12915-023-01521-5
  8. Santos L; Nascimento R; Duarte A; Railean V; Amaral MD; Harrison PT; Gama-Carvalho M; Farinha CM. "Mutation-class dependent signatures outweigh disease-associated processes in cystic fibrosis cells.". Cell & bioscience (2023): http://europepmc.org/abstract/med/36759923.
    10.1186/s13578-023-00975-y
  9. Soares F; Pimentel D; Erban A; Neves C; Reis P; Pereira M; Rego C; et al. "Virulence-related metabolism is activated in Botrytis cinerea mostly in the interaction with tolerant green grapes that remain largely unaffected in contrast with susceptible green grapes.". Horticulture research (2022): https://europepmc.org/articles/PMC9720446.
    10.1093/hr/uhac217
  10. García-Vaquero ML; Gama-Carvalho M; Pinto FR; De Las Rivas J. "Biological interacting units identified in human protein networks reveal tissue-functional diversification and its impact on disease.". Computational and structural biotechnology journal (2022): http://europepmc.org/abstract/med/35891788.
    10.1016/j.csbj.2022.07.006
  11. Tânia Monteiro Marques; Margarida Gama-Carvalho. "Network Approaches to Study Endogenous RNA Competition and Its Impact on Tissue-Specific microRNA Functions". Biomolecules (2022): https://doi.org/10.3390/biom12020332.
    10.3390/biom12020332
  12. Mark S. Gibson; Cláudia Noronha-Estima; Margarida Gama-Carvalho. "Therapeutic Metabolic Reprograming Using microRNAs: From Cancer to HIV Infection". Genes 13 2 (2022): 273-273. https://doi.org/10.3390/genes13020273.
    10.3390/genes13020273
  13. Kumar, Saumya; Fonseca, Válter R.; Ribeiro, Filipa; Basto, Afonso P.; Água-Doce, Ana; Monteiro, Marta; Elessa, Dikélélé; et al. "Developmental bifurcation of human T follicular regulatory cells". Science Immunology 6 59 (2021): http://dx.doi.org/10.1126/sciimmunol.abd8411.
    Published • 10.1126/sciimmunol.abd8411
  14. Lopes, Mariana; Louzada, Sandra; Gama-Carvalho, Margarida; Chaves, Raquel; Mariana Lopes; Sandra Louzada; Margarida Gama-Carvalho; Raquel Chaves. "Genomic Tackling of Human Satellite DNA: Breaking Barriers through Time". International Journal of Molecular Sciences 22 9 (2021): 4707. http://dx.doi.org/10.3390/ijms22094707.
    10.3390/ijms22094707
  15. Tran, Nham; Ricafrente, Alison; To, Joyce; Lund, Maria; Marques, Tania M.; Gama-Carvalho, Margarida; Cwiklinski, Krystyna; Dalton, John P.; Donnelly, Sheila. "Fasciola hepatica hijacks host macrophage miRNA machinery to modulate early innate immune responses". Scientific Reports 11 1 (2021): http://dx.doi.org/10.1038/s41598-021-86125-1.
    10.1038/s41598-021-86125-1
  16. "Machine learning modelling of blood lipid biomarkers in familial hypercholesterolaemia versus polygenic/environmental dyslipidaemia.". Scientific reports (2021): https://europepmc.org/articles/PMC7884847.
    10.1038/s41598-021-83392-w
  17. "IsomiR_Window: a system for analyzing small-RNA-seq data in an integrative and user-friendly manner.". BMC bioinformatics (2021): https://europepmc.org/articles/PMC7852101.
    10.1186/s12859-021-03955-6
  18. Sandra Louzada; Mariana Lopes; Daniela Ferreira; Filomena Adega; Ana Escudeiro; Margarida Gama-Carvalho; Raquel Chaves. "Decoding the Role of Satellite DNA in Genome Architecture and Plasticity—An Evolutionary and Clinical Affair". Genes 11 1 (2020): 72-72. https://doi.org/10.3390/genes11010072.
    10.3390/genes11010072
  19. da Costa, Paulo J.; Menezes, Juliane; Saramago, Margarida; García-Moreno, Juan F.; Santos, Hugo A.; Gama-Carvalho, Margarida; Arraiano, Cecília M.; Viegas, Sandra C.; Romão, Luísa. "Experimental supporting data on DIS3L2 over nonsense-mediated mRNA decay targets in human cells". Data in Brief 28 (2019): 104943. http://dx.doi.org/10.1016/j.dib.2019.104943.
    10.1016/j.dib.2019.104943
  20. Silva, Susana L.; Fonseca, Mariana; Pereira, Marcelo L. M.; Silva, Sara P.; Barbosa, Rita R.; Serra-Caetano, Ana; Blanco, Elena; et al. "Monozygotic Twins Concordant for Common Variable Immunodeficiency: Strikingly Similar Clinical and Immune Profile Associated With a Polygenic Burden". Frontiers in Immunology 10 (2019): http://dx.doi.org/10.3389/fimmu.2019.02503.
    Open access • Published • 10.3389/fimmu.2019.02503
  21. da Costa, Paulo J.; Menezes, Juliane; Saramago, Margarida; García-Moreno, Juan F.; Santos, Hugo A.; Gama-Carvalho, Margarida; Arraiano, Cecília M.; Viegas, Sandra C.; Romão, Luísa. "A role for DIS3L2 over natural nonsense-mediated mRNA decay targets in human cells". Biochemical and Biophysical Research Communications 518 4 (2019): 664-671. http://dx.doi.org/10.1016/j.bbrc.2019.08.105.
    10.1016/j.bbrc.2019.08.105
  22. Hill, Meredith; Mason, Dayna; Monteiro Marques, Tânia; Gama Carvalho, Margarida; Tran, Nham. "Developing a virus-microRNA interactome using cytoscape". MethodsX 7 (2019): 100700. http://dx.doi.org/10.1016/j.mex.2019.10.011.
    Open access • Published • 10.1016/j.mex.2019.10.011
  23. Gama-Carvalho, Margarida. "Skeletal muscle miR-34a/SIRT1:AMPK axis is activated in experimental and human non-alcoholic steatohepatitis.". Journal of molecular medicine (Berlin, Germany) (2019): https://doi.org/10.1007/s00109-019-01796-8.
    10.1007/s00109-019-01796-8
  24. Amaral, Andreia J.; Maria Cristina Bressan; Almeida, João Marques ; Bettencourt, Carlos; Moreira, Olga; João Sá; Gama-Carvalho, Margarida; Bessa, Rui Manuel Pereira da Silva; Luis T. Gama. "Combining genome-wide association analyses and gene interaction networks to reveal new genes associated with carcass traits, meat quality and fatty acid profiles in pigs". Livestock Science 220 (2019): 180-189. https://linkinghub.elsevier.com/retrieve/pii/S1871141318308977.
    Published
  25. Sara F. Fernandes; Rita Fior; Francisco Pinto; Margarida Gama-Carvalho; Leonor Saúde. "Fine-tuning of fgf8a expression through alternative polyadenylation has a selective impact on Fgf-associated developmental processes". Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms 1861 9 (2018): 783-793. https://doi.org/10.1016/j.bbagrm.2018.07.012.
    10.1016/j.bbagrm.2018.07.012
  26. Gama-Carvalho, Margarida. "Searching the overlap between network modules with specific betweeness (S2B) and its application to cross-disease analysis.". Scientific reports (2018): http://europepmc.org/articles/PMC6070533.
    10.1038/s41598-018-29990-7
  27. Gama-Carvalho, Margarida. "Human papillomavirus 16 E6 modulates the expression of miR-496 in oropharyngeal cancer.". Virology (2018): https://doi.org/10.1016/j.virol.2018.05.022.
    10.1016/j.virol.2018.05.022
  28. Margarida Gama-Carvalho; Marina L. Garcia-Vaquero; Francisco R. Pinto; Florence Besse; Joachim Weis; Aaron Voigt; Jörg B. Schulz; Javier De Las Rivas. "Linking amyotrophic lateral sclerosis and spinal muscular atrophy through RNA-transcriptome homeostasis: a genomics perspective". Journal of Neurochemistry (2017): https://doi.org/10.1111%2Fjnc.13945.
    10.1111/jnc.13945
  29. Amaral, Andreia J.; Andrade, Jorge; Foxall, Russell B.; Matoso, Paula; Matos, Ana M.; Soares, Rui S.; Rocha, Cheila; et al. "miRNA profiling of human naive CD4 T cells links miR-34c-5p to cell activation and HIV replication". Embo Journal 36 3 (2017): 346-360. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000394444900011&KeyUID=WOS:000394444900011.
    10.15252/embj.201694335
  30. Barros, P.; Amaral, A. J.; Abrantes, L. B.; Oliveira, T.; Louro, H.; Silva, M. J.; Jordan, P.; Gama-Carvalho, M.; Matos, P.. "Stimulation of RAC1/PAK1 signalling upregulates DNA damage repair genes via the BCL6/STAT5-switch". Annals of Oncology 28 (2017): http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000411324000071&KeyUID=WOS:000411324000071.
  31. Simao, A. L.; Afonso, M. B.; Rodrigues, P. M.; Amaral, A. J.; Gama-Carvalho, M.; Cortez-Pinto, H.; Rodrigues, C. M. P.; Castro, R. E.. "Activation of miR-34a contributes to liver and muscle insulin resistance in experimental and human non-alcoholic fatty liver disease". Journal of Hepatology 66 1 (2017): S163-S163. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000401056600340&KeyUID=WOS:000401056600340.
  32. Simao, Andre L.; Afonso, Marta B.; Rodrigues, Pedro M.; Amaral, Andreia J.; Gama-Carvalho, Margarida; Borralho, Pedro M.; Machado, Mariana V.; et al. "miRNA-339-3p is increased in human and experimental models of NAFLD and targeted by TUDCA in insulin-resistant muscle cells". Hepatology 62 (2015): 681A-681A. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000368375402284&KeyUID=WOS:000368375402284.
  33. Simao, A. L.; Afonso, M. B.; Rodrigues, P. M.; Amaral, A. J.; Gama-Carvalho, M.; Borralho, P. M.; Machado, M. V.; et al. "MODULATION OF MUSCLE MICRORNA EXPRESSION PROFILES IN PATIENTS WITH NAFLD AND IN C2C12 CELLS INCUBATED WITH PALMITIC ACID". Journal of Hepatology 62 (2015): S699-S699. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000362830900138&KeyUID=WOS:000362830900138.
  34. Santos, H. A. F.; Amaral, A.; Yokokura, T.; Van Vactor, D.; Gama-Carvalho, M.. "Characterization of Smn-dependent gene expression changes underlying motor neuron degeneration and synaptic mysfunction in SMA". Febs Journal 282 (2015): 175-176. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000362570603054&KeyUID=WOS:000362570603054.
  35. Ramos, C. G.; Andrade, J.; Gama-Carvalho, M.. "Impact of small RNA molecules derived from the 5 ' ends of tRNAs in cell function". Febs Journal 282 (2015): 217-217. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000362570604017&KeyUID=WOS:000362570604017.
  36. Amaral, A. J.; Brito, F. F.; Chobanyan, T.; Yoshikawa, S.; Yokokura, T.; Van Vactor, D.; Gama-Carvalho, M.. "Quality assessment and control of tissue specific RNA-seq libraries of Drosophila transgenic RNAi models". Front Genet 5 (2014): 43-43.
    10.3389/fgene.2014.00043
  37. Goncalves, Vania; Henriques, Andreia; Pereira, Joana; Costa, Ana Neves; Moyer, Mary Pat; Moita, Luis Ferreira; Gama-Carvalho, Margarida; et al. "Phosphorylation of SRSF1 by SRPK1 regulates alternative splicing of tumor-related Rac1b in colorectal cells". Rna-a Publication of the Rna Society 20 4 (2014): 474-482. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000333191300005&KeyUID=WOS:000333191300005.
    10.1261/rna.041376.113.
  38. Gama-Carvalho, Margarida; Andrade, Jorge; Bras-Rosario, Luis. "Regulation of Cardiac Cell Fate by microRNAs: Implications for Heart Regeneration.". Cells 3 4 (2014): 996-1026. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=MEDLINE&KeyUT=MEDLINE:25358052&KeyUID=MEDLINE:25358052.
    10.3390/cells3040996
  39. Figueiredo, N.; Chora, A.; Raquel, H.; Pejanovic, N.; Pereira, P.; Hartleben, B.; Neves-Costa, A.; et al. "Anthracyclines induce DNA damage response-mediated protection against severe sepsis". Immunity 39 5 (2013): 874-884. http://www.scopus.com/inward/record.url?eid=2-s2.0-84887559345&partnerID=MN8TOARS.
    10.1016/j.immuni.2013.08.039
  40. Brás-Rosário, L.; Matsuda, A.; Pinheiro, A.I.; Gardner, R.; Lopes, T.; Amaral, A.; Gama-Carvalho, M.. "Expression Profile of microRNAs Regulating Proliferation and Differentiation in Mouse Adult Cardiac Stem Cells". PLoS ONE 8 5 (2013): http://www.scopus.com/inward/record.url?eid=2-s2.0-84877855782&partnerID=MN8TOARS.
    10.1371/journal.pone.0063041
  41. Matsuda, Alex J.; Pinheiro, Ana I.; Amaral, Andreia; Gama-Carvalho, Margarida; Rosario, Luis; Kajstura, Jan; Anversa, Piero. "Adult Cardiac Stem Cells regulation by microRNAs". Circulation Research 113 4 (2013): http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000332063200245&KeyUID=WOS:000332063200245.
  42. Barreto-Hernadez, E.; Gama-Carvalho, M.; Sousa, L.. "Pre-processing optimization of RNA immunoprecipitation microarray data". Journal of Computational Biology 18 10 (2011): 1319-1328. http://www.scopus.com/inward/record.url?eid=2-s2.0-80053123169&partnerID=MN8TOARS.
    10.1089/cmb.2010.0020
  43. Moura-Alves, P.; Neves-Costa, A.; Raquel, H.; Pacheco, T.R.; D'Almeida, B.; Rodrigues, R.; Cadima-Couto, I.; et al. "An shRNA-based screen of splicing regulators identifies SFRS3 as a negative regulator of IL-1ß secretion". PLoS ONE 6 5 (2011): http://www.scopus.com/inward/record.url?eid=2-s2.0-79956068797&partnerID=MN8TOARS.
    10.1371/journal.pone.0019829
  44. Bras-Rosario, Luis B.; Pinheiro, Ana Isabel; MAtsuda, Alex; Gardner, Rui; Amaral, Andreia; Gama-Carvalho, Margarida. "MicroRna Profiling of Mouse Adult Cardiac Stem Cells Reveals Key Gene Expression Pathways for Differentiation and Proliferation Control". Circulation 124 21 (2011): http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000299738706324&KeyUID=WOS:000299738706324.
  45. Rosario, L. B.; Pinheiro, A. I.; Matsuda, A.; Fonseca, A. M.; Gama Carvalho, M.. "MicroRNA profiling of cardiac stem cells to unravel its biologic functions". European Heart Journal 32 (2011): 957-957. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000208702707078&KeyUID=WOS:000208702707078.
  46. Gama-Carvalho, M.; Carmo-Fonseca, M.. "Heterokaryons: An assay for nucleocytoplasmic shuttling". Cell Biology, Four-Volume Set 2 (2006): 277-283. http://www.scopus.com/inward/record.url?eid=2-s2.0-84884892292&partnerID=MN8TOARS.
    10.1016/B978-012164730-8/50109-X
  47. Gama-Carvalho, M.; Barbosa-Morais, N.L.; Brodsky, A.S.; Silver, P.A.; Carmo-Fonseca, M.. "Genome-wide identification of functionally distinct subsets of cellular mRNAs associated with two nucleocytoplasmic-shuttling mammalian splicing factors". Genome Biology 7 11 (2006): http://www.scopus.com/inward/record.url?eid=2-s2.0-33847693938&partnerID=MN8TOARS.
    10.1186/gb-2006-7-11-r113
  48. Lindberg, A; Gama-Carvalho, M; Carmo-Fonseca, M; Kreivi, JP. "A single RNA recognition motif in splicing factor ASF/SF2 directs it to nuclear sites of adenovirus transcription". Journal of General Virology 85 (2004): 603-608.
    10.1099/vir.0.19722-0
  49. Gama-Carvalho, M.; Condado, I.; Carmo-Fonseca, M.. "Regulation of adenovirus alternative RNA splicing correlates with a reorganization of splicing factors in the nucleus". Experimental Cell Research 289 1 (2003): 77-85. http://www.scopus.com/inward/record.url?eid=2-s2.0-0042663831&partnerID=MN8TOARS.
    10.1016/S0014-4827(03)00251-9
  50. Gama-Carvalho, M.; Carmo-Fonseca, M.. "The rules and roles of nucleocytoplasmic shuttling proteins". FEBS Letters 498 2-3 (2001): 157-163. http://www.scopus.com/inward/record.url?eid=2-s2.0-0035827321&partnerID=MN8TOARS.
    10.1016/S0014-5793(01)02487-5
  51. Gama-Carvalho, M.; Carvalho, M.P.; Kehlenbach, A.; Valcárcel, J.; Carmo-Fonseca, M.. "Nucleocytoplasmic Shuttling of Heterodimeric Splicing Factor U2AF". Journal of Biological Chemistry 276 16 (2001): 13104-13112. http://www.scopus.com/inward/record.url?eid=2-s2.0-0035918266&partnerID=MN8TOARS.
    10.1074/jbc.M008759200
  52. Gama-Carvalho, M.; Krauss, R.D.; Chiang, L.; Valcárcel, J.; Green, M.R.; Carmo-Fonseca, M.. "Targeting of U2AF65 to sites of active splicing in the nucleus". Journal of Cell Biology 137 5 (1997): 975-987. http://www.scopus.com/inward/record.url?eid=2-s2.0-0030612083&partnerID=MN8TOARS.
    10.1083/jcb.137.5.975
Online resource
  1. Lopes, Mariana; Louzada, Sandra; Ferreira, Daniela; Veríssimo, Gabriela; Daniel Eleutério; Gama-Carvalho, Margarida; Chaves, Raquel. 3'RACE-Seq Human Satellite 1 for transcript characterization.. 2022. http://www.ncbi.nlm.nih.gov/bioproject/PRJNA867346.
Preprint
  1. Kumar S; Basto AP; Ribeiro F; Almeida SCP; Campos P; Peres C; Al-Khalidi S; et al. "Specialized Tfh cell subsets driving type-1 and type-2 humoral responses in lymphoid tissue". 2022. http://europepmc.org/abstract/PPR/PPR525995.
    10.1101/2022.07.28.501817
  2. Marta Correia; Mafalda Bourbon; Margarida Gama-Carvalho. "Analysis of a paediatric cohort of dyslipidaemic patients using unsupervised learning methods provides insights into the biochemical phenotypes of familial hypercholesterolemia". 2022. https://doi.org/10.1101/2022.07.17.22277724.
    10.1101/2022.07.17.22277724
  3. Isabel Alcobia; Margarida Gama-Carvalho; Leonor Magalhães; Vitor Proa; Domingos Henrique; Hélia Neves. "Thymus formation in uncharted embryonic territories". 2022. https://doi.org/10.1101/2022.03.09.483697.
    10.1101/2022.03.09.483697
  4. Flávio Soares; Diana Pimentel; Alexander Erban; Catarina Neves; Pedro Reis; Marcelo Pereira; Cecilia Rego; et al. "Botrytis cinerea activates virulence-related metabolism in the interaction with tolerant green grapes". 2022. https://doi.org/10.22541/au.165276022.24615813/v1.
    10.22541/au.165276022.24615813/v1
  5. Mariana Lopes; Sandra Louzada; Daniela Ferreira; Gabriela Veríssimo; Daniel Eleutério; Margarida Gama-Carvalho; Raquel Chaves. "Human Satellite 1 (HSAT1) analysis provides novel evidence of pericentromeric transcription". 2022. https://doi.org/10.1101/2022.08.11.503625.
    10.1101/2022.08.11.503625
  6. Garcia-Vaquero M; Heim M; Flix B; Pereira M; Palin L; Marques TM; Pinto FR; et al. "Analysis of pre-symptomatic Drosophila models for ALS and SMA reveals convergent impact on functional protein complexes linked to neuro-muscular degeneration". 2022. http://europepmc.org/abstract/PPR/PPR508274.
    10.1101/2022.06.20.496821
Activities

Supervision

Thesis Title
Role
Degree Subject (Type)
Institution / Organization
2021/03/01 - Current Dissecting new regulatory mechanisms in retroviral integration and replication: The role of miR-34c-5p in HIV-1 infection
Supervisor
Bioquímica (PhD)
Universidade de Lisboa Faculdade de Ciências, Portugal
2021/01/11 - Current Deciphering the ´adaptome´ of patients with solid cancers
Co-supervisor
Bioquímica (PhD)
Universidade de Lisboa Faculdade de Ciências, Portugal
2020/09/07 - Current Exploring nanopore long reads and whole-genome sequencing data to characterize long tandem repeats and chromosome structure in mammalian genomes
Supervisor
Bioquimica e Biomedicina (Master)
Universidade de Lisboa Faculdade de Ciências, Portugal
2020/01/01 - Current Fine-tuning the Robertsonian Translocations in Evolution and Disease: Centromere deep sequencing and mechanistic insights
Co-supervisor
PhD in Molecular Genetics (PhD)
Universidade de Trás-os-Montes e Alto Douro, Portugal
2021/09/07 - 2022/12/13 Functional characterization of putative miRNA-like sequences encoded in the HIV genome
Supervisor
Biologia Humana e Ambiente (Master)
Universidade de Lisboa Faculdade de Ciências, Portugal
2020/09/01 - 2022/01/31 Evaluating the impact of 2D, 3D static and 3D microfluidic tissue culture conditions on the in vitro response of cancer cells to chemotherapeutic agents
Supervisor
Bioquímica (Master)
Universidade de Lisboa Faculdade de Ciências, Portugal
2018 - 2022 Unveiling the regulation of germinal centre responses and antibody production by follicular T cells
Co-supervisor
Programa Doutoral do Centro Académico de Medicina de Lisboa (ramo de Medicina; ramo de Ciências Biomédicas; ramo de Ciências e Tecnologias da Saúde) (PhD)
Universidade de Lisboa - Faculdade de Medicina, Portugal
2017/10/18 - 2022 A systems approach to the mechanisms of neurodegeneration
Supervisor
Biologia (PhD)
Universidade de Lisboa Faculdade de Ciências, Portugal
2017/09/01 - 2022 Identification of novel biomarkers to distinguish polygenic and monogenic dyslipidemia by a system biology approach
Supervisor
Biologia (PhD)
Universidade de Lisboa Faculdade de Ciências, Portugal
2017 - 2022 A systems approach to the mechanisms of neurodegeneration
Supervisor
Biologia (PhD)
Universidade de Lisboa Faculdade de Ciências, Portugal
2017 - 2022 Identification of novel biomarkers to distinguish polygenic and monogenic dyslipidemia by a system biology approach
Supervisor
Doutoramento em Biologia - Especialidade de Biologia de Sistemas (PhD)
Universidade de Lisboa Faculdade de Ciências, Portugal
2020/09/01 - 2021/12/14 Characterization of miR-34c-5p role in human and mouse T cell function
Supervisor
Bioquímica (Master)
Universidade de Lisboa Faculdade de Ciências, Portugal
2020/09/01 - 2021/11/26 Investigating Cellular and Molecular Neuroendocrine Signalling in the Diabetic Gut
Co-supervisor
Biologia Molecular e Genética (Master)
Universidade de Lisboa Faculdade de Ciências, Portugal
2019/09/01 - 2021/07/28 Using iPSCs-derived microglia from Alzheimer´s disease patients to assess early cell deficits and neurotoxic properties
Co-supervisor
Bioquímica (Master)
Universidade de Lisboa Faculdade de Ciências, Portugal
2019/09/01 - 2021/03/26 ACTN3 and Vitamin D receptor polymorphisms impact in muscle physical properties of Spondyoarthritis patients
Co-supervisor of Isabel Alexandra Vitorino Tendeiro Pedroso Pimenta
Biologia Molecular e Genética (Master)
Universidade de Lisboa Faculdade de Ciências, Portugal
2018/01/09 - 2020/10/27 RNA-seq analysis to unravel the molecular players involved in implantation/rejection of human tumor cells in zebrafish
Supervisor
Bioinformática e Biologia Computacional (Master)
Universidade de Lisboa Faculdade de Ciências, Portugal
2019/09/28 - 2020/06/24 Longitudinal analysis of adipocytes and liver gene expression during T. brucei infection
Co-supervisor
Bioinformática e Biologia Computacional (Master)
Universidade de Lisboa Faculdade de Ciências, Portugal
2018/09/30 - 2020/06/24 Regulation of meningeal IL-17+ immune cell homeostasis: (patho)physiological implications
Co-supervisor of Sara Alexandra da Costa Pereira
Biologia Molecular e Genética (Master)
Universidade de Lisboa Faculdade de Ciências, Portugal
2018/09 - 2019/11/29 Epitranscriptomic deregulation in bladder cancer: implications for tumour aggressiveness
Co-supervisor
Biologia Molecular e Genética (Master)
Universidade de Lisboa Faculdade de Ciências, Portugal
2018/09/01 - 2019/11/26 UNLOCKING ROBERTSONIAN TRANSLOCATED CHROMOSOMES IN ITS REPETITIVE DNA CONTENT TO TACKLE GENOMIC AND MECHANISTIC ISSUES
Co-supervisor
Genética Molecular Comparativa e Tecnológica (Master)
Universidade de Trás-os-Montes e Alto Douro Escola de Ciências da Vida e do Ambiente, Portugal
2018/09 - 2019/11/13 Single-molecule imaging of transcription dynamics
Co-supervisor
Biologia Molecular e Genética (Master)
Universidade de Lisboa Faculdade de Ciências, Portugal
2018/01/09 - 2019/09/05 Characterization of sncrnas in response to HIV
Supervisor
Biologia Molecular e Genética (Master)
Universidade de Lisboa Faculdade de Ciências, Portugal
2015/06/26 - 2018/12/10 Functional networks in which the DIS3 and DIS3L1 exosome subunits participate and their relevance in colorectal cancer
Supervisor
Biologia (PhD)
Universidade de Lisboa Faculdade de Ciências, Portugal
2017/09 - 2018/11 Development of a new pharmacogenomics system for lung cancer based in next generation sequencing
Supervisor
Bioinformática e Biologia Computacional (Master)
Universidade de Lisboa Faculdade de Ciências, Portugal
2016/09 - 2018/11 O Papel da LARP4 no Sistema nervoso central: relação com a Atrofia Muscular Espinal
Supervisor
Neurociências
Universidade de Lisboa - Faculdade de Medicina, Portugal
2013/01 - 2018/11 Post-Transcriptional Regulation in the Developing Embryo
Supervisor of Sara Maria Ferreira Fernandes
Ciências Biomédicas (PhD)
Universidade de Lisboa - Faculdade de Medicina, Portugal
2015 - 2018/10 "The human mRNA decay machinery : an unexpected role for DIS3L2 over nonsense -mediated decay targets
Supervisor
Biologia (PhD)
Universidade de Lisboa Faculdade de Ciências, Portugal
2017/09 - 2018/09/20 Influence of histone octamer core distortion on nucleosome thermal mobility
Supervisor
Bioquímica (Master)
Universidade de Lisboa Faculdade de Ciências, Portugal
2015/09 - 2016/11 Exploring the interactions between neuron degeneration and RNA homeostasis through biological network analysis
Supervisor
Bioquímica (Master)
Universidade de Lisboa Faculdade de Ciências, Portugal
2013/09 - 2014/11/17 Transcriptome profiling of spinal muscular atrophy models using RNA-Seq
Supervisor
Bioinformática e Biologia Computacional (Master)
Universidade de Lisboa Faculdade de Ciências, Portugal
2013/09 - 2014/07 Characterization of post-transcriptional control of eukaryotic gene expression programs using large-scale transcriptomic approaches
Supervisor
Bioinformática (Master)
Université de Rouen, France
2012/09 - 2013/12/20 Manipulation of cysteine cathepsins during Mycobacterium tubersulosis infection of human macrophages
Co-supervisor
Microbiologia Aplicada (Master)
Universidade de Lisboa Faculdade de Ciências, Portugal
2012/09 - 2013/12/20 Mycobacteria manipulation of host proteases and inflammatory pathways during infection within human macrophages and dendritic cells
Co-supervisor
Microbiologia Aplicada (Master)
Universidade de Lisboa Faculdade de Ciências, Portugal
2012/09 - 2013/11/22 Mycobacterium tuberculosis subversion of host vesicular traffic pathways
Co-supervisor
Microbiologia Aplicada (Master)
Universidade de Lisboa Faculdade de Ciências, Portugal
2012/09 - 2013/10 Deciphering host factors for mycobacteria internalization during phagocytosis
Co-supervisor
Microbiologia Aplicada (Master)
Universidade de Lisboa Faculdade de Ciências, Portugal
2012/06 - 2013/03/19 Characterization of differentially expressed microRNAs in HIV-1 and HIV-2 infection in human CD4-T cells. A role for miR-34c-5p in T-cell activation and response to HIV infection.
Supervisor
Doenças Infecciosas Emergentes (Master)
Universidade de Lisboa - Faculdade de Medicina, Portugal
2010/09/01 - 2011/12/10 Identification of the RNA regulators operating in the segmentation clock
Supervisor
Bioquímica (Master)
Universidade de Lisboa Faculdade de Ciências, Portugal
2009/09/01 - 2010/11/11 'Biochemical and Functional characterization of protein complexes associated with the 3' UTRs of target mRNAs'
Supervisor
Bioquímica (Master)
Universidade de Lisboa Faculdade de Ciências, Portugal
2009/09/01 - 2010/09/30 'MicroRNA and gene expression profiling of adult cardiac stem cells
Supervisor
Biologia Celular e Biotecnologia (Master)
Universidade de Lisboa Faculdade de Ciências, Portugal
2009/09 - 2010 Characterization of post-transcriptional control mechanisms regulating SMN2 gene expression'
Supervisor of Ana Luisa Gomes
Biologia Molecular e Genética (Master)
Universidade de Lisboa Faculdade de Ciências, Portugal

Jury of academic degree

Topic
Role
Candidate name (Type of degree)
Institution / Organization
2019 Role of mitochondria-targeting mirnas in non-alcoholic fatty liver disease
Thesis Member
André Daniel Lopes Simão (PhD)
Universidade de Lisboa Faculdade de Farmácia, Portugal
2019 In vitro genotoxic and epigenotoxic effects of occupational exposure to nanofibres
(Thesis) Main arguer
Célia Ventura (PhD)
Universidade Nova de Lisboa Escola Nacional de Saúde Pública, Portugal
2018 New insights on black rot of crucifers: disclosing novel virulence genes by in vivo host/pathogen transcriptomics and functional genetics
Thesis Member
Joana Costa Cardoso da Cruz, (PhD)
Universidade de Lisboa Faculdade de Ciências, Portugal
2018 Characterization of mRNA Dysfunctional Mechanisms Associated with the Genetic Disease Cystic Fibrosis
Thesis Member
Verónica Manuela Rôxo Felício (PhD)
Universidade de Lisboa Faculdade de Ciências, Portugal
2018 Molecular and Functional Characterization of a Satellite Non-Coding RNA – FA-SAT – a Key Player of Cycling Cells
(Thesis) Main arguer
Daniela Perneta Ferreira (PhD)
Universidade de Trás-os-Montes e Alto Douro Departamento de Genética, Portugal
2016 The patchwork pattern of rodent genomes: species-specific organization of orthologous DNA sequences
(Thesis) Main arguer
Ana Maria Correia Vieira da Silva (PhD)
Universidade de Trás-os-Montes e Alto Douro Departamento de Genética, Portugal
2016 The role of miR-21 and miR-499 in Head and Neck Cancer
(Thesis) Arguer
Pamela Alero Ajuyah (PhD)
University of Technology Sydney, Australia
2015 Transcription, Splicing and Chromatin Structure
(Thesis) Main arguer
João Filipe F. Curado e Silva (PhD)
Universidade do Porto Instituto de Ciências Biomédicas Abel Salazar, Portugal
2015 Genetic and Functional Analysis of the Pdb6 (10q13) Locus in Padget’s Disease of Bone
(Thesis) Main arguer
Íris Alexandra Lopes da Silva (PhD)
Universidade do Algarve Departamento de Ciências Biomédicas e Medicina, Portugal
2014 When chromatin structure meets CD6 exon 5 alternative splicing: an encounter triggered by T cell activation
(Thesis) Main arguer
Vânia Raquel Gomes Glória (PhD)
Universidade do Porto Instituto de Ciências Biomédicas Abel Salazar, Portugal
2014 Identification and molecular characterization of bone-related microRNas: functional implications
(Thesis) Main arguer
Vânia Cristina Palma Roberto (PhD)
Universidade do Algarve Departamento de Ciências Biomédicas e Medicina, Portugal
2012 The role of mRNA translation on nonsense-mediated decay inhibition of transcripts carrying a short open reading frame
Thesis Member
Isabel Cristina Ramos Peixeiro (PhD)
Universidade de Lisboa Faculdade de Ciências, Portugal
2011 Functional and molecular characterizatin of SR45, a plant-specific splicing factor involved in sugar and stress signaling in Arabidopsis thaliana
(Thesis) Main arguer
Raquel Fonseca de Carvalho (PhD)
Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal
2011 Zebrafish small RNAs: Unravelling expression and functions of novel microRNAs and tRNA fragments in a vertebrate model
(Thesis) Main arguer
Ana Raquel Santos Câlhoa Mano Soares (PhD)
Universidade de Coimbra Faculdade de Farmácia, Portugal
2011 Statistical Methodologies for the analysis and normalization of RIP-Chip data”,
Thesis Member
Emiliano Barreto Hernandez (PhD)
Universidade de Lisboa Faculdade de Ciências, Portugal
2010 Production of a genomic CFTR construct inserted into a human artificial chromosome (HAC) and characterization of its expression
Thesis Member
Carla Susana Rodrigues Braz (PhD)
Universidade de Lisboa Faculdade de Ciências, Portugal
2010 Genetic Dissection of antigen presentation pathways
Thesis Member
Catarina Sousa Ferreira Moita (PhD)
Universidade de Lisboa - Faculdade de Medicina, Portugal
2010 Identification of Splicing Factors with a Role in Interleukin-1ß Secretion
Thesis Member
Pedro Moura Alves (PhD)
Universidade de Lisboa - Faculdade de Medicina, Portugal
2010 Synthetic Pathogens for the Integrated Biophysical and Genetic Dissection of Antigen Cross-Presentation
Thesis Member
Rui Pedro Freitas (PhD)
Universidade de Lisboa - Faculdade de Medicina, Portugal
2009 Study of the Nonsense-Mediated Decay (NMD) Mechanism in the Human alfa-globin mRNA
Thesis Member
Francisco José Cabral Pereira (PhD)
Universidade de Lisboa Faculdade de Ciências, Portugal
2009 Regulation of alternative splicing of the small GTPase Rac1 Vânia Marina Cristóvão Gonçalves (PhD)
Universidade de Lisboa Faculdade de Ciências, Portugal
2009 Genome wide mining of alternative splicing in metazoan model organisms
Thesis Member
Inês Mollet (PhD)
Universidade de Lisboa - Faculdade de Medicina, Portugal
2005 Human beta-globin nonsense-mediated mRNA decay – a new positional effect of the nonsense codon
(Thesis) Main arguer
Maria Ângela Inácio (PhD)
Universidade de Lisboa Faculdade de Ciências, Portugal

Course / Discipline taught

Academic session Degree Subject (Type) Institution / Organization
2020/02 - Current Imunologia Bioquímica (Licenciatura) Universidade de Lisboa Faculdade de Ciências, Portugal
2019/02 - Current Projeto Experimental II Bioquímica (Mestrado integrado) Universidade de Lisboa Faculdade de Ciências, Portugal
2017/09 - Current Bioquímica da Neurodegeneração Bioquímica (Mestrado integrado) Universidade de Lisboa Faculdade de Ciências, Portugal
2017/09 - Current Bioquímica Experimental III Bioquímica (Licenciatura) Universidade de Lisboa Faculdade de Ciências, Portugal
2016/09 - Current Abordagens Ómicas em Biotecnologia e Biomedicina Bioquímica (Mestrado integrado) Universidade de Lisboa Faculdade de Ciências, Portugal
2014/09 - Current Tópicos em Expressão Génica Biologia (Doutoramento) Universidade de Lisboa Faculdade de Ciências, Portugal
2013/02 - Current Bioquímica Computacional Bioquímica (Doutoramento) Universidade de Lisboa Faculdade de Ciências, Portugal
2009/02 - 2018/06 Biologia Molecular Ciências da Saúde (Licenciatura) Universidade de Lisboa Faculdade de Ciências, Portugal
1996/09 - 2008/06 Biologia Molecular da Célula Estudos Básicos de Medicina (Licenciatura) Universidade de Lisboa - Faculdade de Medicina, Portugal
Distinctions

Award

2023 Programa Gilead Génese Investigação 2023
Gilead Sciences Lda, Portugal
2004 1º Prémio L’Oreal Portugal/Unesco for Women in Science