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Octavio Salgueiro Paulo. Concluiu o(a) Título de Agregado em Biologia Evolutiva em 2021/11/05 pelo(a) Universidade de Lisboa Faculdade de Ciências, Licenciatura em Biologia - Recursos Faunisticos e Ambiente em 1988 pelo(a) Universidade de Lisboa Faculdade de Ciências e Doctor of Philosophy em Doutoramento em 2001/08/01 pelo(a) Queen Mary University of London. É Professor Associado no(a) Universidade de Lisboa Faculdade de Ciências. Publicou 104 artigos em revistas especializadas. Possui 21 capítulo(s) de livros e 3 livro(s). Organizou 1 evento(s). Orientou 6 tese(s) de doutoramento e coorientou 7. Orientou 20 dissertação(ões) de mestrado e coorientou 14. Recebeu 5 prémio(s) e/ou homenagens. Participa e/ou participou como Investigador em 15 projeto(s) e Investigador responsável em 5 projeto(s). Atua na(s) área(s) de Ciências Naturais com ênfase em Ciências Biológicas com ênfase em Biologia da Evolução das Espécies.
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Identification

Personal identification

Full name
Octavio Salgueiro Paulo
Date of birth
1963/12/26
Gender
Male

Citation names

  • Paulo, Octavio
  • Paulo OS
  • Paulo, Octávio Salgueiro

Author identifiers

Ciência ID
471A-1219-9C5F
ORCID iD
0000-0001-5408-5212
Google Scholar ID
https://scholar.google.pt/citations?hl=en&user=tcAFPwEAAAAJ&view_op=list_works&pagesize=100
Researcher Id
D-9921-2011
Scopus Author Id
6602677193

Knowledge fields

  • Natural sciences - Biological Sciences - Evolutionary Biology

Languages

Language Speaking Reading Writing Listening Peer-review
Portuguese Advanced (C1) Advanced (C1) Advanced (C1) Advanced (C1)
English Intermediate (B1) Advanced (C1) Intermediate (B1) Intermediate (B1)
French Intermediate (B1) Advanced (C1) Beginner (A1) Intermediate (B1)
Education
Degree Classification
2021/11/04 - 2021/11/05
Concluded
 Biologia Evolutiva (Título de Agregado)
Major in Biologia Evolutiva
Universidade de Lisboa Faculdade de Ciências, Portugal
 Aprovado
2001/08/01
Concluded
 Doutoramento (Doctor of Philosophy)
Queen Mary University of London, United Kingdom
"The phylogeography of reptiles of the Iberian Peninsula" (THESIS/DISSERTATION)
 minor changes
1988
Concluded
 Biologia - Recursos Faunisticos e Ambiente (Licenciatura)
Universidade de Lisboa Faculdade de Ciências, Portugal
"Estudo Eco-Etológico da população de Lacerta lepida (Daudin 1802) (Sauria, Lacertidae) da Ilha da Berlenga. Relatório" (THESIS/DISSERTATION)
 17
Affiliation

Teaching in Higher Education

Category
Host institution 		Employer
2020/09/09 - Current Associate Professor (University Teacher) Universidade de Lisboa Faculdade de Ciências, Portugal
Universidade de Lisboa Faculdade de Ciências, Portugal
2001/08/01 - 2020/09/09 Assistant Professor (University Teacher) Universidade de Lisboa Faculdade de Ciências, Portugal
1993 - 2001 Assistant (University Teacher) Universidade de Lisboa Faculdade de Ciências, Portugal
1989 - 1993 Trainee Assistant (University Teacher) Universidade de Lisboa Faculdade de Ciências, Portugal
1987 - 1989 Tutor (University Teacher) Universidade de Lisboa Faculdade de Ciências, Portugal
Projects

Contract

Designation Funders
2020 - Current Ecosystem services on horticulture: value of native mirid species- UMBERT-eco
PTDC/ASP-PLA/29110/2017
Researcher
Concluded
2018/10 - 2021/09 A systems approach to understand the impact of climate changes in Coffea spp.
PTDC/ASP-AGR/31257/2017
Researcher
Fundação para a Ciência e a Tecnologia
Ongoing
2018/10 - 2021/09 Exploring the aquatic resistome
PTDC/BIA-BMA/31451/2017
Researcher
Fundação para a Ciência e a Tecnologia
Ongoing
2018/09 - 2021/08 Keep Pace: Selection of trees keeping pace with fast environmental changes, a science based approach for sustainable XXI century Oak forests
PTDC/ASP-SIL/29263/2017
Principal investigator
Fundação para a Ciência e a Tecnologia
Ongoing
2018/07 - 2021/06 Effect of EUtrophication and CLimate on POllinators and ecosystem service provision
LISBOA-01-0145-FEDER-028360
Researcher
Fundação para a Ciência e a Tecnologia
Ongoing
2018/07 - 2021/06 Pathogenomics of coffee leaf rust to probe virulence mechanisms and diagnostic markers
PTDC/ASP-PLA/29189/2017
Researcher
Fundação para a Ciência e a Tecnologia
Ongoing
2016/06 - 2019/11 Characterization of cork formation and reproductive biology in a cork oak hybrids population
PTDC/AGR-FOR/3356/2014
Researcher
Fundação para a Ciência e a Tecnologia
Concluded
2016/06 - 2019/11 Macaronesian Islands as a testing ground to assess biodiversity drivers at multiple scales
PTDC/BIABIC/0054/2014
Researcher
Fundação para a Ciência e a Tecnologia
Concluded
2016/06 - 2019/11 Limonium spp. as a model for autonomous apomixis: characterization of genetic molecular factors distinguishing apomictic from sexual reproductive processes
PTDC/AGRPRO/4285/2014
Researcher
Fundação para a Ciência e a Tecnologia
Concluded
2012/03 - 2015/02 Population genomics of virulence adaptation in coffee leaf rust (Hemileia vastatrix)
Provided by PTCRIS: 119943
119943
Researcher
Fundação para a Ciência e a Tecnologia, I.P.
Concluded
2011/04 - 2014/10 CicadaCon - Testing congruence among patterns of variation in morphology, acoustics and genetic distance in the divergence of selected species of Mediterranean Cicadas (Insecta, Hemiptera).
115511
Provided by PTCRIS: 115511
Researcher
Fundação para a Ciência e a Tecnologia, I.P.
Concluded
2011/01/01 - 2013/12/31 Projecto Estratégico - UI 329 - 2011-2012
PEst-OE/BIA/UI0329/2011
Fundação da Faculdade de Ciências da Universidade de Lisboa, Portugal

Universidade de Lisboa Faculdade de Ciências, Portugal
Fundação para a Ciência e a Tecnologia
Concluded
2010/04 - 2013/09 Assessment of genetic and genomic resources of Cork Oak: the basis towards a prospective management
104966
Provided by PTCRIS: 104966
Researcher
Fundação para a Ciência e a Tecnologia, I.P.
Concluded
2010/03 - 2013/08 FLYPRED - Has tiger-fly a role in biological control of protected crops?
99723
Provided by PTCRIS: 99723
Researcher
Fundação para a Ciência e a Tecnologia, I.P.
Concluded
2010/01 - 2013/06 Adaptive significance and genetic basis of a balanced colour-polymorphism
98783
Provided by PTCRIS: 98783
Researcher
Fundação para a Ciência e a Tecnologia, I.P.
Concluded
2008/04 - 2011/09 Modelling terrestrial biodiversity in the Cape Verde islands: combining ecogeographical information with molecular markers
Provided by PTCRIS: 74288
74288
Researcher
Fundação para a Ciência e a Tecnologia, I.P.
Concluded
2009/10 - 2011/05 Cork oak ESTs Consortium - Polymorphism detection and validation
Provided by PTCRIS: 109256
109256
SOBREIRO/36/2009
SOBREIRO/36/2009
Principal investigator
Fundação da Faculdade de Ciências da Universidade de Lisboa, Portugal
 Fundação para a Ciência e a Tecnologia, I.P.

Fundação para a Ciência e a Tecnologia
Concluded
2008/01 - 2010/12 Female promiscuity: testing for genetic benefits and mechanisms of sperm choice
71390
Provided by PTCRIS: 71390
Researcher
Fundação para a Ciência e a Tecnologia, I.P.
Concluded
2005/07 - 2008/06 Process of speciation: accessing the genic view
Provided by PTCRIS: 59288
59288
Principal investigator
Fundação para a Ciência e a Tecnologia, I.P.
Concluded
2003/10 - 2006/09 Coalescent methods applied to populations' analyses with microsatellies
Provided by PTCRIS: 47999
47999
Principal investigator
Fundação para a Ciência e a Tecnologia, I.P.
Concluded
2003/10 - 2006/09 Phylogeographic patterns in the Mediterranean basin
Provided by PTCRIS: 48365
48365
Principal investigator
Fundação para a Ciência e a Tecnologia, I.P.
Concluded

Other

Designation Funders
2019/04/01 - 2022/03/01 Selection of Cynara cardunculus Genotypes for New Biotechnological Applications – the value chain improvement of cardoon, a well-adapted Mediterranean crop - MedCynaraBioTec
ALT20-03-0145-FEDER-039495
Researcher
European Regional Development Fund
Concluded
Outputs

Publications

Book
  1. Moreira PL; Almeida AP; Rosa HD; Paulo OS; Crespo, E.G.. Bases para a Conservação da Lagartixa-da-montanha (Lacerta monticola).. Lisboa, Portugal: Instituto da Conservação da Natureza.. 1999.
  2. Brito JC; Godinho MR; Paulo OS; Crespo EG. Bases para a Conservação do Lagarto-de-água (Lacerta schreiberi).. Lisboa, Portugal: Instituto da Conservação da Natureza.. 1999.
  3. Pargana JM; Paulo OS; Crespo EG. Anfíbios e Répteis do Parque Natural da Serra de S. Mamede.. LIsboa, Portugal: Instituto da Conservação da Natureza.. 1996.
Book chapter
  1. Paulo OS; Miraldo, A.. "Chamaeleo chamaeleon". In Atlas dos Anfíbios e Répteis de Portugal, 138-139. Lisboa, Portugal: Instituto da Conservação da Natureza e da Biodiversidade, 2008.
    10.1515/9783110815405.37
  2. Paulo OS. "Lacerta lepida". In Atlas dos Anfíbios e Répteis de Portugal, 144-145. Lisboa, Portugal: Instituto da Conservação da Natureza e da Biodiversidade, 2008.
  3. Paulo OS; Moreira PL. "Lacerta monticola". In Atlas dos Anfíbios e Répteis de Portugal, 148-149. Instituto da Conservação da Natureza e da Biodiversidade, 2008.
  4. Oliveira ME; Brito JC; Dellinger T; Ferrand, N.; Loureiro, A.; Martins HR; Pargana J; et al. "Acanthodactylus erythrurus Lagartixa-de-dedos-denteados". In Livro Vermelho dos Vertebrados de Portugal, 129-129. Lisboa, Portugal: Instituto da Conservação da Natureza, 2005.
  5. Oliveira ME; Brito JC; Dellinger T; Ferrand, N.; Loureiro, A.; Martins HR; Pargana J; et al. "Caretta caretta Tartaruga-comum". In Livro Vermelho dos Vertebrados de Portugal, 123-124. Lisboa, Portugal: Instituto da Conservação da Natureza, 2005.
  6. Oliveira ME; Brito JC; Dellinger T; Ferrand, N.; Loureiro, A.; Martins HR; Pargana J; et al. "Caronella austriaca Cobra-lisa-europeia". In Livro Vermelho dos Vertebrados de Portugal, 137-138. Lisboa, Portugal: Instituto da Conservação da Natureza, 2005.
  7. Oliveira ME; Brito JC; Dellinger T; Ferrand, N.; Loureiro, A.; Martins HR; Pargana J; et al. "Chioglossa lusitanica Salamandra-lusitânica". In Livro Vermelho dos Vertebrados de Portugal, 115-116. Lisboa, Portugal: Instituto da Conservação da Natureza, 2005.
  8. Oliveira ME; Brito JC; Dellinger T; Ferrand, N.; Loureiro, A.; Martins HR; Pargana J; et al. "Discoglossus galganoi Rã-de-focinho-pontiagudo". In Livro Vermelho dos Vertebrados de Portugal, 119-120. Lisboa, Portugal: Instituto da Conservação da Natureza, 2005.
  9. Oliveira ME; Brito JC; Dellinger T; Ferrand, N.; Loureiro, A.; Martins HR; Pargana J; et al. "Emys orbicularis Cágado-de-carapaça-estriada". In Livro Vermelho dos Vertebrados de Portugal, 121-122. Lisboa, Portugal: Instituto da Conservação da Natureza, 2005.
  10. Oliveira ME; Brito JC; Dellinger T; Ferrand, N.; Loureiro, A.; Martins HR; Pargana J; et al. "Hemidactylus turcicus Osga-turca". In Livro Vermelho dos Vertebrados de Portugal, 125-125. Lisboa, Portugal: Instituto da Conservação da Natureza, 2005.
  11. Oliveira ME; Brito JC; Dellinger T; Ferrand N; Loureiro, A.; Martins HR; Pargana J; et al. "Lacerta monticola Lagartixa-da-montanha". In Livro Vermelho dos Vertebrados de Portugal, 131-131. Lisboa: Instituto da Conservação da Natureza, 2005.
  12. Oliveira ME; Brito JC; Dellinger T; Ferrand N; Loureiro, A.; Martins HR; Pargana J; et al. "Podarcis carbonelli Lagartixa de Carbonell". In Livro Vermelho dos Vertebrados de Portugal, 134-135. Lisboa, Portugal: Instituto da Conservação da Natureza, 2005.
  13. Oliveira ME; Brito JC; Dellinger T; Ferrand N; Loureiro, A.; Martins HR; Pargana J; et al. "Psammodromus hispanicus Lagartixa-do-mato-ibérica". In Livro Vermelho dos Vertebrados de Portugal, 135-136. Lisboa, Portugal: Instituto da Conservação da Natureza, 2005.
  14. Oliveira ME; Brito, J.C.; Dellinger T; Ferrand, N.; Loureiro, A.; Martins HR; Pargana J; et al. "Tarentola bischoffi Osga das Selvagens". In Livro Vermelho dos Vertebrados de Portugal, 127-128. Lisboa, Portugal: Instituto da Conservação da Natureza, 2005.
  15. Oliveira ME; Brito JC; Dellinger T; Ferrand, N.; Loureiro, A.; Martins HR; Pargana J; et al. "Triturus helveticus Tritão-palmado". In Livro Vermelho dos Vertebrados de Portugal, 117-118. Lisboa, Portugal: Instituto da Conservação da Natureza, 2005.
  16. Oliveira ME; Brito, J.C.; Dellinger T; Ferrand, N.; Loureiro, A.; Martins HR; Pargana J; et al. "Vipera latasti, Víbora-cornuda". In Livro Vermelho dos Vertebrados de Portugal, 139-140. Lisboa, Portugal: Instituto da Conservação da Natureza, 2005.
  17. Paulo OS. "Vipera seoanei Víbora de Seoane". In Livro Vermelho dos Vertebrados de Portugal, 141-142. Lisboa, Portugal: Instituto da Conservação da Natureza, 2005.
  18. Paulo OS. "Recovery plan of Gallotia simonyi: an outsider view". In El Lagarto Gigante de El Hierro (Gallotia simonyi), 277-288. Las Palmas de Gran Canaria, Spain: Asociacion Herpetologica Española, 1999.
  19. Viegas-Crespo AM; Pavão MR; Santos, V.; Cruz ML; Paulo OS; Leal J; Sarmento N; et al. "Selenium status and cardiovascular risk factors in populations from different portugueses regions". In Natural antioxidants and food quality in atherosclerosis and cancer prevention, 188-194. Cambridge, United Kingdom: Royal Society of Chemistry, 1996.
  20. Crespo EG; Oliveira ME; Zuiderwijk A; Paulo OS; Rosa HD; Viegas AM; Pargana JM; et al. "Amphibian diversity in Portuguese natural parks: A study project". In Scientia Herpetologica, 303-306. Barcelona, Spain: Asociacion Herpetologica Espanola, 1995.
  21. Vicente LA; Paulo OS; Vicente, L. A.; Paulo, O.. "Behavioral and Morphological adaptations of the Lizard Lacerta lepida to particular environmental constraints". In Ethoexperimental Approaches to the Study of Behavior, Nato ASI (Advanced Science Institutes) Series D: Behavioural and Social Sciences, 640-643. Dordrech, Netherlands: Kluwer Academic Publishers, 1989.
Conference abstract
  1. Pinho, Catarina J.; Vasconcelos, Raquel; Pena, Ana; Paulo, Octavio; Emerson, Brent; Romeiras, Maria. "Biogeography and evolution of reptiles in a biodiversity hotspot.". Paper presented in Young Systematists' Forum, London, 2022.
    Published
  2. Paulino, Ana; Santos, Jacqueline; Pereira, Margarida; Bras, Teresa; Rosa, Daniela; Paulo, Octávio Salgueiro; Marum, Liliana; Fátima Duarte. "Morphological characterization of Cynara cardunculus L. (cardoon) in southern Portugal". Paper presented in VI PhD Students Meeting in Environmental and Agriculture, Évora, 2021.
    Published
Conference paper
  1. Ana Paulino; Teresa Brás; Daniela Rosa; Rita Costa Pires; Jacqueline Santos; Margarida Pereira; Octávio S. Paulo; Liliana Marum; Mª Fátima Duarte. "Chemical and Genetic Relationships of Cynara cardunculus L. (Cardoon) in Southern Portugal". 2021.
    10.3390/IECPS2021-12011
  2. Paulino, Ana; Bras, Teresa; Rosa, Daniela; Pires, Rita; Santos, Jacqueline; Pereira, Margarida; Paulo, Octávio Salgueiro; Marum, Liliana; Fátima Duarte. "Chemical and Genetic Relationship of Cynara cardunculus L. (Cardoon) in Southern Portugal". Paper presented in 2nd International Electronic Conference on Plant Sciences¿10th Anniversary of Journal Plants, Basel, 2021.
    Published
  3. Batista, Dora; Modesto, Inês; Loureiro, Andreia; Martins, Renata; Pereira, Ana Paula; Talhinhas, Pedro; Paulo, Octávio Salgueiro; Várzea, Victor. "Highly divergent alleles in a candidate gene of Hemileia vastatrix suggest a putative role of adaptive significance". 2015.
  4. Silva, D.N.; Várzea, Victor; Pereira, AP; Paulo, Octávio Salgueiro; Batista, Dora. "Population genomics of Hemileia vastatrix using RAD sequencing". Paper presented in 25th International Conference on Coffee Science, Association for Science and Information on Coffee (ASIC), Arménia, 2015.
    Published
  5. Silva, DN; Vieira, A.; Talhinhas, P.; Azinheira, Helena; Silva, MC; Fernandez, D.; Duplessis, S; Paulo, Octávio Salgueiro; Batista, Dora. "Phylogenetic analysis of Hemileia vastatrix and related taxa using a genome-scale approach.". Paper presented in 24th International Conference on Coffee Science, Association for Science and Information on Coffee (ASIC 2012, 2013.
  6. Paulo, Octavio; Costa, JS; Pina-Martins, Francisco; Modesto, I.; Matos, J.; Almeida, H.; Miguel, C.; et al. "Cork Oak genetic differentiation and diversity". Paper presented in Present and Future of Cork Oak in Portugal, Oeiras, 2012.
    Published
  7. Paulo, Octavio; Pina-Martins, Francisco; Modesto, I.; Batista, Dora. "Cork Oak ESTs Consortium - Polymorphism detection and validation.". Paper presented in Present and Future of Cork Oak in Portugal, Oeiras, 2012.
    Published
  8. Batista, Dora; Guerra-Guimarães, Leonor; Talhinhas, P.; Loureiro, Andreia; Silva, D.; Gonzalez, L.; Pereira, Ana Paula; et al. "Analysis of population genetic diversity and differentiation in Hemileia vastatrix by molecular markers". Paper presented in 23rd International Conference on Coffee Science, Association for Science and Information on Coffee (ASIC), 2010.
  9. Talhinhas, Pedro; Azinheira, Helena; Loureiro, Andreia; Batista, Dora; Vieira, A.; Pina-Martins, Francisco; Tisserant, E.; et al. "Overview of the functional virulent genome of the coffee leaf rust pathogen Hemileia vastatrix". Paper presented in 23rd International Conference on Coffee Science, Association for Science and Information on Coffee (ASIC), Bali, 2010.
  10. Silva, DN; Talhinhas, P.; Varzea, Vitor; Loureiro, Andreia; Silva, MC; Paulo, Octávio Salgueiro; Batista, Dora. "Population structure of Colletotrichum kahawae, the causal agent of coffee berry disease (CBD): Insights from a multi-locus approach". Paper presented in 23rd International Conference on Coffee Science, Association for Science and Information on Coffee (ASIC), Bali, 2010.
  11. Batista, D.; Nunes, V.L.; Gomes-Laranjo, J.; Paulo, O.S.; Costa, R.. "Segregation of SSR and AFLP loci in chestnut F1 hybrids (Castanea sativa × C. Crenata/C. mollissima)". Paper presented in 4th International Chestnut Symposium, 2009.
  12. Batista, D.; Valdiviesso, T.; Santos, L.; Costa, R.; Paulo, O.S.; Gomes-Laranjo, J.. "Genotyping castanea sativa × C. crenata and C. sativa × C. mollissima F1 hybrids using nuclear SSRs". Paper presented in Second Iberian Congress on Chestnut., Bragança, 2008.
Conference poster
  1. Galhofa, Davide; Sousa, Filipe; António Onofre Soares; Borges, Isabel; Oliveira, L.; Bielza, P.; Seabra, Sofia G.; Figueiredo, Elisabete; Paulo, Octavio. "DNA barcoding and phylogeny of Miridae specimens from the Azores, mainland Portugal and Spain, based on mithochodrial COI sequences". Paper presented in XIX ENBE Annual Meeting of the Portuguese Association for Evolutionary Biology, 2023.
  2. Silva, Maria Inês; Viegas, Mariana; Sequeira, Vera; Paulo, Octávio Salgueiro; Vieira, Ana Rita. "TUNAPRINT: Molecular identification of canned tuna in Portugal". Paper presented in Ciências Research & Innovation Day 2023, 2023.
  3. Galhofa, Davide; Viegas, Mariana; Sousa, Filipe; André Filipe Henriques; Sousa, Paulo; Pina-Martins, Francisco; Vanhove, Mathieu; et al. "Genotyping by Sequencing brings new insights into the population structure and local adaptation of Holm Oak". Paper presented in Frontiers in E3: 9th cE3c Annual Meeting, 2023.
  4. Ana Filipa Costa Paulino; Rota Pires; Fernandes, Isabel; Jacqueline O. Santos; Bras, Teresa; Rosa, Daniela; Paulo, Octavio; Maria F. Duarte. "RNA-Seq reveals differential expression profiles and functional annotation of genes involved in cynaropicrin synthesis in cardoon". Paper presented in VIII PhD Students Meeting in Environment and Agriculture, 2022.
  5. Birg, João; Paulo, Octávio Salgueiro; Batista, D. "Identification of distinctive transcriptomic profiles among Hemileia vastatrix pathotypes throughout key stages of the infection process. Selected Flash Talk". Paper presented in 28th International Conference on Coffee Science (ASIC), 28th June - 1st July 2021, Montpellier, France, 2021.
  6. Ana F.C. Paulino; Bras, Teresa; Rosa, Daniela; Rita Costa Pires; Paulo, Octávio Salgueiro; Liliana Marum; Fátima Duarte. "Genetic and chemical relationship of Cynara cardunculus populations – a natural source of cynaropicrin". Paper presented in Encontro Ciência´20, 2020.
  7. Paulo, Octávio Salgueiro; Pina-Martins, Francisco; Coelhos, Ana; Costa, Augusta; Marques, Isabel; Batista, Dora; Picó, Xavier; et al. "Keeping pace with fast environmental changes, a science-based approach for sustainable Cork Oak forests". Paper presented in The 2019 Congress of the European Society for Evolutionary Biology, 2019.
  8. Vieira, Ana; Silva, DN; Varzea, Vitor; Paulo, Octávio Salgueiro; Batista, Dora. "Novel insights on colonization routes and evolutionary potential of Colletotrichum kahawae". Paper presented in 27th International Conference on Coffee Science ¿ ASIC 2018, 2018.
  9. Vieira, A.; Silva, DN; Varzea, Vitor; Silva, MC; Paulo, Octavio; Batista, Dora. "Adaptation of Colletotrichum kahawae to Coffea arabica: a genomic approach". Paper presented in 2nd cE3c Annual Meeting: Frontiers in E3, 2016.
  10. Paulo, Octavio; Pina-Martins, Francisco; Ribeiro, C.; Batista, Dora. "SNPs vs SSRs: different tales of two markers.". Paper presented in IUFRO 2016 Genomics and Forest Tree Genetics, 2016.
  11. Silva, DN; Duplessis, S; Talhinhas, Pedro; Azinheira, Helena; Paulo, Octavio; Batista, Dora. "Phylogenomics provides insights on the adaptive evolution of rust fungi". Paper presented in 15th Congress of the European Society for Evolutionary Biology (ESEB2015), 2015.
  12. Vieira, A.; Silva, DN; Paulo, Octavio; Batista, Dora. "Genome wide approach to detect positive selection on the plant pathogen fungal genus Colletotrichum". Paper presented in 15th Congress of the European Society for Evolutionary Biology (ESEB2015), 2015.
  13. Modesto, Inês; Loureiro, Andreia; Martins, R.; Pereira, Ana Paula; Varzea, Vitor; Paulo, Octavio; Batista, Dora; Miguel, Célia. "Analysis of expression in a putative pathogenesis-related gene of coffee leaf rust". Paper presented in 15th Congress of the European Society for Evolutionary Biology (ESEB2015), 2015.
  14. Pina-Martins, Francisco; Batista, Dora; Paulo, Octavio. "Uncorking the Evolutionary history of Quercus suber: New SNPs mined from ESTs reveal an unexpected pattern of genetic structure". Paper presented in 15th Congress of the European Society for Evolutionary Biology (ESEB2015), 2015.
  15. Paulo, Octavio; Pina-Martins, Francisco; Modesto, Inês; Ribeiro, C.; Costa, J.; Miguel, Célia; Batista, Dora. "Genomic signatures of contrasting adaptation in cork oak populations across the species´ range.". Paper presented in 15th Congress of the European Society for Evolutionary Biology (ESEB2015), 2015.
  16. Fino, J.; Azinheira, Helena; Loureiro, Andreia; Talhinhas, Pedro; Varzea, Vitor; Gichuru, Elijah; Paulo, Octavio; Batista, Dora; Silva, MC. "Plant molecular responses upon the pathogen¿s switch to necrotrophy in the pathosystem coffee-Colletotrichum kahawae". Paper presented in XVI International Congress on Molecular Plant-Microbe Interactions (MPMI2014, 2014.
  17. Silva, DN; Duplessis, S; Paulo, Octavio; Batista, Dora. "Phylogenomics of Basidiomycota identifies targets for evolutionary studies of adaptation and pathogenicity in rust fungi.". Paper presented in 12th European Conference on Fungal Genetics (ECFG12), 2014.
  18. Vieira, A.; Cabral, Ana; Pires, AS; Talhinhas, Pedro; Fino, J.; Azinheira, Helena; Varzea, Vitor; et al. "Validation of RT-qPCR reference genes for expression data analysis in Colletotrichum kahawae". Paper presented in 25th International Conference on Coffee Science (ASIC2014), 2014.
  19. Fino, J.; Figueiredo, Andreia; Loureiro, Andreia; Gichuru, Elijah; Varzea, Vitor; Silva, MC; Batista, Dora; Paulo, Octavio. "Transcriptional profiling of compatible and incompatible coffee-Colletotrichum kahawae interactions through RNA-Seq analysis". Paper presented in 25th International Conference on Coffee Science (ASIC2014)., 2014.
  20. Romeiras, Maria; Duarte, Maria Cristina; Santos-Guerra, A.; Moura, M.; Batista, Dora; Vieira, A.; Paulo, Octavio. "Evolutionary and biogeographic history of the Macaronesian Beta-Patellifolia species (Amaranthaceae): combining phylogenetic and ecological studies.". Paper presented in 14th Congress of the European Society for Evolutionary Biology (ESEB2013), 2013.
  21. Fino, J.; Figueiredo, Andreia; Loureiro, Andreia; Silva, MC; Batista, Dora; Paulo, Octavio. "Analysis of Illumina RNA-seq data from a susceptible vs resistant coffee - Colletotrichum kahawae interaction". Paper presented in 14th Congress of the European Society for Evolutionary Biology (ESEB2013), 2013.
  22. Vieira, A.; Silva, DN; Varzea, Vitor; Silva, MC; Paulo, Octavio; Batista, Dora. "Unraveling the genomics of adaptation of Colletotrichum kahawae to Coffea arabica". Paper presented in 14th Congress of the European Society for Evolutionary Biology (ESEB2013), 2013.
  23. Modesto, Inês; Miguel, Célia; Pina-Martins, Francisco; Glushkova, M.; Veloso, M.; Batista, Dora; Paulo, Octavio. "Identifying signatures of natural selection in cork oak (Quercus suber L.) genes". Paper presented in 14th Congress of the European Society for Evolutionary Biology (ESEB2013, 2013.
  24. Ribeiro, C.; Almeida, MH; Rodrigues, A.; Glushkova, M.; Batista, Dora; Paulo, Octavio. "Patterns of cork oak population differentiation in candidate genes for adaptive traits". Paper presented in 14th Congress of the European Society for Evolutionary Biology (ESEB2013), 2013.
  25. Silva, DN; Vieira, A.; Talhinhas, Pedro; Azinheira, Helena; Silva, MC; Fernandez, D.; Duplessis, S; Batista, Dora; Paulo, Octavio. "Phylogenomics unravels major evolutionary trends of the Basidiomycota". Paper presented in 14th Congress of the European Society for Evolutionary Biology (ESEB2013), 2013.
  26. Batista, Dora; Silva, DN; Martins, R.; Pereira, Ana Paula; Guerra-Guimarães, Leonor; Talhinhas, Pedro; Silva, MC; Varzea, Vitor; Paulo, Octavio. "Using population genomics to uncover the genetic structure, adaptive variation and evolution of Hemileia vastatrix, the plant pathogen causing coffee leaf rust.". Paper presented in 14th Congress of the European Society for Evolutionary Biology (ESEB2013), 2013.
  27. Batista, Dora; Martins, R.; Varzea, Vitor; Paulo, Octavio. "Signs of adaptive population divergence in a virulence-related candidate gene of coffee leaf rust.". Paper presented in XIII Congresso Luso-Espanhol de Fisiologia Vegetal (FV2013), 2013.
  28. Figueiredo, Andreia; Loureiro, Andreia; Batista, Dora; Fino, J.; Varzea, Vitor; Gichuru, Elijah; Paulo, Octavio; Pais, Maria Salomé; Silva, MC. "Unravelling Coffea response to C. kahawae through Illumina RNA sequencing: establishment of reference genes and first steps on the validation of candidate genes". Paper presented in XIII Congresso Luso-Espanhol de Fisiologia Vegetal (FV2013), 2013.
  29. Ribeiro, C.; Rodrigues, A.; Miguel, Célia; Almeida, H.; Glushkova, M.; Paulo, Octavio; Batista, Dora. "Looking for molecular clues of local adaptation in cork oak through a candidate gene approach.". Paper presented in XIII Congresso Luso-Espanhol de Fisiologia Vegetal (FV2013), 2013.
  30. Modesto, Inês; Miguel, Célia; Pina-Martins, Francisco; Glushkova, M.; Veloso, M.; Paulo, Octavio; Batista, Dora. "Assessing adaptive genetic variation in cork oak (Quercus suber L.) through SNP analysis.". Paper presented in XIII Congresso Luso-Espanhol de Fisiologia Vegetal (FV2013), 2013.
  31. Pina-Martins, Francisco; Vieira, BM; Seabra, Sofia; Batista, Dora; Paulo, Octavio. "The 4Pipe4 analysis pipeline¿ how to exploit the hidden SNPs in your 454 dataset: a testcase with a Quercus suber dataset.". Paper presented in XIII Congresso Luso-Espanhol de Fisiologia Vegetal (FV2013), 2013.
  32. Modesto, IS; Miguel, Célia; Pina-Martins, Francisco; Glushkova, M.; Veloso, M.; Paulo, Octavio; Batista, Dora. "Testing associations between genetic and environmental variation in cork oak (Quercus suber L.)". Paper presented in IUFRO Tree Biotechnology 2013, 2013.
  33. Batista, Dora; Loureiro, Andreia; Modesto, Inês; Martins, R.; Talhinhas, Pedro; Varzea, Vitor; Paulo, Octávio Salgueiro. "Population genetic divergence and expression profiles in a virulence-related candidate gene of the coffee obligate pathogen, Hemileia vastatrix". Paper presented in 12th European Conference on Fungal Genetics (ECFG12), 2012.
  34. Modesto, Inês; Miguel, Célia; Pina-Martins, Francisco; Glushkova, M.; Veloso, M.; Paulo, Octavio; Batista, Dora. "Population frequency data of SNP markers in cork oak". Paper presented in IUFRO 2012 Conference ¿Genetics of Fagaceae and Nothofagaceae¿, 2012.
  35. Ribeiro, C.; Almeida, MH; Rodrigues, A.; Glushkova, M.; Simões, F.; Matos, J.; Pereira, JS; Paulo, Octavio; Batista, Dora. "Unraveling population genetic variation of a candidate gene for bud burst in cork oak.". Paper presented in IUFRO 2012 Conference ¿Genetics of Fagaceae and Nothofagaceae¿, 2012.
  36. Modesto, Inês; Pina-Martins, Francisco; Batista, Dora; Paulo, Octávio Salgueiro. "Single Nucleotide Polymorphisms validation and application as phylogeographical markers in cork oak.". Paper presented in VII Encontro Nacional de Biologia Evolutiva (ENBE), 2011.
  37. Paulo, Octavio; Vieira, A.; Talhinhas, Pedro; Silva, DN; Silva, MC; Azinheira, Helena; Fernandez, D.; Duplessis, S; Batista, Dora. "A transcriptome-based phylogenetic analysis of Pucciniales within the Basidiomycota". Paper presented in 3th Congress of the European Society for Evolutionary Biology (ESEB2011), 2011.
  38. Silva, DN; Talhinhas, Pedro; Cai, L.; Varzea, Vitor; Paulo, Octavio; Batista, Dora. "Did the pathogenic fungus Colletotrichum kahawae emerged through a very recent host-jump speciation event?". Paper presented in 13th Congress of the European Society for Evolutionary Biology (ESEB2011), 2011.
  39. Vieira, A.; Romeiras, Maria; Veloso, M.; Moura, M.; Batista, Dora; Paulo, Octavio; Duarte, Maria Cristina. "Phylogenetic patterns in Beta section (Subfamily Betoideae, Amaranthaceae) as inferred from chloroplast and nuclear DNA sequences". Paper presented in 13th Congress of the European Society for Evolutionary Biology (ESEB2011), 2011.
  40. Costa, J.; Miguel, Célia; Almeida, MH; Oliveira, MM.; Matos, J.; Simões, F.; Veloso, M.; et al. "Genetic divergence in Cork Oak based on cpDNA sequence data.". Paper presented in IUFRO (International Union of Forestry Research Organizations) Tree Biotechnology Conference 2011: From Genomes to Integration and Delivery., 2011.
  41. Romeiras, Maria; Paulo, Octávio Salgueiro; Coutrim, Helena; Pina-Martins, Francisco; Duarte, M. C.; Pais, M. S.. "Colonization and diversification patterns of Cape Verde endemic Echium L. species.". Paper presented in International Symposium FloraMac2010, 2010.
  42. Silva, DN; Talhinhas, Pedro; Loureiro, Andreia; Manuel, L.; Gichuru, Elijah; Varzea, Vitor; Paulo, Octavio; Batista, Dora. "Newly developed molecular markers reveal a potential host-shift as an alternative hypothesis for the speciation and spread of an emergent fungal pathogen on Coffea arabica.". Paper presented in II Trends in Biodiversity and Evolution - TiBE2010 (CIBIO), 2010.
  43. Costa, JS.; Simões, F.; Almeida, MH; Matos, JA.; Miguel, Célia; Oliveira, MM.; Veloso, M.; et al. "Unraveling genetic variation in Cork Oak Natural Populations". Paper presented in II Trends in Biodiversity and Evolution - TiBE2010 (CIBIO), 2010.
  44. Batista, Dora; Guerra-Guimarães, Leonor; Pereira, Ana Paula; Paulo, Octavio; Varzea, Vitor. "Screening for AFLP Markers Linked to Virulence Profiles in the Coffee Rust Hemileia vastatrix.". Paper presented in 9th Conference of the European Foundation for Plant Pathology (EFPP) & 6th Congress of the Sociedade Portuguesa de Fitopatologia (SPF), 2010.
  45. Silvia, DN; Talhinhas, Pedro; Varzea, Vitor; Paulo, Octavio; Batista, Dora. "Analysis of the molecular evolution of a Mating-type gene in species complex of the Colletotrichum genus.". Paper presented in 9th Conference of the European Foundation for Plant Pathology (EFPP) & 6th Congress of the Sociedade Portuguesa de Fitopatologia (SPF), 2010.
  46. Diniz, Inês; Talhinhas, Pedro; Loureiro, Andreia; Azinheira, Helena; Vieira, B.; Pina-Martins, Francisco; Batista, Dora; et al. "Cellular and transcriptomic analysis of host and non-host resistance of coffee to rusts (Hemileia vastatrix and Uromyces vignae).". Paper presented in 9th Conference of the European Foundation for Plant Pathology (EFPP) & 6th Congress of the Sociedade Portuguesa de Fitopatologia (SPF), 2010.
  47. Romeiras, MM; Loureiro, J.; Vieira, A.; Castro, S.; Pina-Martins, Francisco; Veloso, M.; Moura, M.; et al. "Genetic diversity of the Portuguese wild Beta-Patellaria species complex using DNA barcoding and flow cytometry.". Paper presented in International Symposium FloraMac2010, 2010.
  48. Silva, DN; Talhinhas, Pedro; Loureiro, Andreia; Silva, MC; Varzea, Vitor; Paulo, Octavio; Batista, Dora. "Insights from a multi-locus approach on the origin of Colletotrichum kahawae and phylogenetic relationship within the group species Colletotrichum gloeosporioides". Paper presented in 9th International Mycological Congress (IMC9: the Biology of Fungi), British Mycological Society,, 2010.
  49. Costa, JS.; Romeiras, MM.; Duarte, Maria Cristina; Batista, Dora; Paulo, Octavio. "DNA Barcode of Quercus species in Portuguese Forests.". Paper presented in II Conference of the European Consortium for the Barcode of Life (ECBOL2), 2010.
  50. Romeiras, Maria; Vieira, A.; Veloso, M.; Moura, M.; Batista, Dora; Pina-Martins, Francisco; Paulo, Octavio; Duarte, Maria Cristina. "Testing a DNA barcode application on the Portuguese wild relatives of Beta species.". Paper presented in II Conference of the European Consortium for the Barcode of Life (ECBOL2), 2010.
  51. Romeiras, Maria; Talhinhas, Pedro; Varzea, Vitor; Loureiro, Andreia; Paulo, Octavio; Batista, Dora. "Resolving phylogeographical patterns in Colletotrichum kahawae, the causal agent of Coffee Berry Disease.". Paper presented in XXXV Jornadas Portuguesas de Genética, 2010.
  52. Costa, JS.; Simões, F.; Almeida, MH; Matos, J.; Miguel, Célia; Oliveira, MM; Veloso, M.; et al. "First Results on the Phylogeographical Genetic Variation of Portuguese Cork Oak Populations". Paper presented in XXXV Jornadas Portuguesas de Genética, 2010.
  53. Maria Manuel Romeiras; Paulo, Octávio Salgueiro; Cotrim, HC; Duarte, M.C.; Pais, M. Salomé; Romeiras, Maria; Duarte, M. C.. "Origin and diversification of genus Echium L. in Cape Verde Islands: a phylogenetic study based on ITS (rDNA) and non-coding regions of cpDNA sequences". Paper presented in Internacional Congress: Plant GEM5, 11-14 de Outubro, Veneza, Itália., 2006.
Edited book
  1. Nico, Lurdes Pratas. Atlas dos Anfíbios e Répteis de Portugal. Lisboa, Portugal: Instituto da Conservação da Natureza e da Biodiversidade. 2008.
    10.5935/978-989-8449-05-4.2016b001 • Editor
Journal article
  1. Theissinger, Kathrin; Fernandes, Carlos; Formenti, Giulio; Bista, Iliana; Berg, Paul R.; Bleidorn, Christoph; Bombarely, Aureliano; et al. "How genomics can help biodiversity conservation". Trends in Genetics 39 7 (2023): 545-559. http://dx.doi.org/10.1016/j.tig.2023.01.005.
    10.1016/j.tig.2023.01.005
  2. Paulo de Sousa; André Henriques; Sara E. Silva; Luísa G. Carvalheiro; Guy Smagghe; Denis Michez; Thomas J. Wood; Octávio S. Paulo. "Genomic Patterns of Iberian Wild Bees Reveal Levels of Diversity, Differentiation and Population Structure, Supporting the “Refugia within Refugia” Hypothesis". Diversity (2023): https://doi.org/10.3390/d15060746.
    10.3390/d15060746
  3. Ana D. Caperta; Isabel Fernandes; Sofia I. R. Conceição; Isabel Marques; Ana S. Róis; Octávio S. Paulo. "Ovule Transcriptome Analysis Discloses Deregulation of Genes and Pathways in Sexual and Apomictic Limonium Species (Plumbaginaceae)". Genes (2023): https://doi.org/10.3390/genes14040901.
    10.3390/genes14040901
  4. Isabel Marques; Isabel Fernandes; Octávio S. Paulo; Dora Batista; Fernando C. Lidon; Fábio Partelli; Fábio M. DaMatta; Ana I. Ribeiro-Barros; José C. Ramalho. "Overexpression of Water-Responsive Genes Promoted by Elevated CO2 Reduces ROS and Enhances Drought Tolerance in Coffea Species". International Journal of Molecular Sciences (2023): https://doi.org/10.3390/ijms24043210.
    10.3390/ijms24043210
  5. Raquel Mendes; Vera L. Nunes; Eduardo Marabuto; Gonçalo J. Costa; Sara E. Silva; Octávio S. Paulo; Paula C. Simões. "Testing drivers of acoustic divergence in cicadas (Cicadidae: Tettigettalna)". Journal of Evolutionary Biology (2023): https://doi.org/10.1111/jeb.14133.
    10.1111/jeb.14133
  6. Pina-Martins, Francisco; Caperta, Ana D.; Conceição, Sofia I. R.; Nunes, Vera L.; Marques, Isabel; Paulo OS. "A first look at sea-lavenders genomics – can genome wide SNP information tip the scales of controversy in the Limonium vulgare species complex?". BMC Plant Biology 23 1 (2023): http://dx.doi.org/10.1186/s12870-022-03974-2.
    10.1186/s12870-022-03974-2
  7. Pina-Martins, Francisco; Caperta, Ana D.; Conceicao, Sofia I. R.; Nunes, Vera L.; Marques, Isabel; Paulo OS. "A first look at sea-lavenders genomics - can genome wide SNP information tip the scales of controversy in the Limonium vulgare species complex? (vol 23, Pg 34, 2023)". BMC Plant Biology (2023): https://publons.com/wos-op/publon/56759512/.
    10.1186/S12870-023-04095-0
  8. Marabuto, Eduardo; Nunes, Miguel S.; Martins, Renata; Mendes, Raquel; Moreira-Pinhal, Tatiana C.; Raimundo, Joao; Seabra, Sofia G.; Paulo, Octavio S.. "Integrative analysis reveals the divergence and speciation between sister Sooty Copper butterflies Lycaena bleusei and L. tityrus". Molecular Phylogenetics and Evolution (2023): https://publons.com/wos-op/publon/58441455/.
    10.1016/J.YMPEV.2022.107699
  9. Costa, Goncalo J.; Nunes, Vera L.; Marabuto, Eduardo; Mendes, Raquel; Silva, Diogo N.; Pons, Pere; Bas, Josep M.; et al. "The effect of the Messinian salinity crisis on the early diversification of the Tettigettalna cicadas". Zoologica Scripta (2023): https://publons.com/wos-op/publon/55433050/.
    10.1111/ZSC.12571
  10. Santangelo, James S.; Ness, Rob W.; Cohan, Beata; Fitzpatrick, Connor R.; Innes, Simon G.; Koch, Sophie; Miles, Lindsay S.; et al. "Global urban environmental change drives adaptation in white clover". Science 375 6586 (2022): 1275-1281. http://dx.doi.org/10.1126/science.abk0989.
    10.1126/science.abk0989
  11. Formenti, Giulio; Theissinger, Kathrin; Fernandes, Carlos; Bista, Iliana; Bombarely, Aureliano; Bleidorn, Christoph; Ciofi, Claudio; et al. "The era of reference genomes in conservation genomics". Trends in Ecology & Evolution 37 3 (2022): 197-202. http://dx.doi.org/10.1016/j.tree.2021.11.008.
    10.1016/j.tree.2021.11.008
  12. Fernandes, Isabel; Paulo, Octavio S.; Marques, Isabel; Sarjkar, Indrani; Sen, Arnab; Graca, Ines; Pawlowski, Katharina; Ramalho, Jose C.; Ribeiro-Barros, Ana, I. "Salt Stress Tolerance in Casuarina glauca: Insights from the Branchlets Transcriptome". Plants (2022): https://publons.com/wos-op/publon/54737970/.
    10.3390/PLANTS11212942
  13. Sousa, Filipe; Costa, Joana; Ribeiro, Carla; Varandas, Marta; Pina-Martins, Francisco; Simoes, Fernanda; Matos, Jose; et al. "Population structure in Quercus suber L. revealed by nuclear microsatellite markers". PeerJ (2022): https://publons.com/wos-op/publon/54722417/.
    10.7717/PEERJ.13565
  14. Rodrigues, Ana Sofia B.; Silva, Diogo Nuno; Varzea, Vitor; Paulo, Octavio S.; Batista, Dora. "Worldwide Population Structure of the Coffee Rust Fungus Hemileia vastatrix Is Strongly Shaped by Local Adaptation and Breeding History". Phytopathology (2022): https://publons.com/wos-op/publon/55433049/.
    10.1094/PHYTO-09-21-0376-R
  15. Malumbres-Olarte, Jagoba; Rigal, François; Girardello, Marco; Cardoso, Pedro; Crespo, Luís Carlos; Amorim, Isabel R.; Arnedo, Miquel; et al. "Habitat filtering and inferred dispersal ability condition across-scale species turnover and rarity in Macaronesian island spider assemblages". Journal of Biogeography 48 12 (2021): 3131-3144. http://dx.doi.org/10.1111/jbi.14271.
    10.1111/jbi.14271
  16. Veloso, Maria Manuela; Simões-Costa, Maria Cristina; Guimarães, Joana Bagoin; Ribeiro, Carla Marques; Evaristo, Isabel; Espírito-Santo, Dalila; Pinto-Ricardo, Cândido; Paulo OS; Duarte, Maria Cristina. "Genetic Diversity and Population Structure of Wild Beets (Beta spp.) from the Western Iberian Peninsula and the Azores and Madeira Islands". Diversity 13 11 (2021): 593. http://dx.doi.org/10.3390/d13110593.
    10.3390/d13110593
  17. Fernandes, Isabel; Marques, Isabel; Paulo OS; Batista, Dora; Partelli, Fábio L.; Lidon, Fernando C.; DaMatta, Fábio M.; Ramalho, José C.; Ribeiro-Barros, Ana I.. "Understanding the Impact of Drought in Coffea Genotypes: Transcriptomic Analysis Supports a Common High Resilience to Moderate Water Deficit but a Genotype Dependent Sensitivity to Severe Water Deficit". Agronomy 11 11 (2021): 2255. http://dx.doi.org/10.3390/agronomy11112255.
    10.3390/agronomy11112255
  18. Sofia G. SEABRA; Joana MARTINS; Patrícia BRÁS; Ana M. TAVARES; Inês FREITAS; António BARATA; Maria Teresa REBELO; et al. "PCR-based detection of prey DNA in the gut contents of the tiger-fly, Coenosia attenuata (Diptera: Muscidae), a biological control agent in Mediterranean greenhouses". European Journal of Entomology (2021): https://doi.org/10.14411/eje.2021.035.
    10.14411/eje.2021.035
  19. Seabra, Sofia G.; Rodrigues, Ana S.B.; Silva, Sara E.; Neto, Ana Carina; Pina-Martins, Francisco; Marabuto, Eduardo; Thompson, Vinton; et al. "Population structure, adaptation and divergence of the meadow spittlebug, Philaenus spumarius (Hemiptera, Aphrophoridae), revealed by genomic and morphological data". PeerJ 9 (2021): e11425-e11425. http://dx.doi.org/10.7717/peerj.11425.
    10.7717/peerj.11425
  20. Isabel Marques; Isabel Fernandes; Octávio S. Paulo; Fernando C. Lidon; Fábio M. DaMatta; José C. Ramalho; Ana I. Ribeiro-Barros. "A Transcriptomic Approach to Understanding the Combined Impacts of Supra-Optimal Temperatures and CO2 Revealed Different Responses in the Polyploid Coffea arabica and Its Diploid Progenitor C. canephora". International Journal of Molecular Sciences 22 6 (2021): 3125-3125. https://doi.org/10.3390/ijms22063125.
    10.3390/ijms22063125
  21. Vanhove, Mathieu; Pina-Martins, Francisco; Coelho, Ana Cristina; Branquinho, Cristina; Costa, Augusta; Batista, Dora; Príncipe, Adriana; et al. "Using gradient Forest to predict climate response and adaptation in Cork oak". Journal of Evolutionary Biology 34 6 (2021): 910-923. http://dx.doi.org/10.1111/jeb.13765.
    10.1111/jeb.13765
  22. Ana Rita Gonçalves; Patrick Grootaert; Rui Andrade; Octávio S. Paulo; Ximo Mengual. "Revision of the morphology, phylogenetic relationships, behaviour and diversity of the Iberian and Italian ant-like Tachydromia Meigen, 1803 (Diptera: Hybotidae)". European Journal of Taxonomy (2021): https://doi.org/10.5852/ejt.2021.732.1213.
    10.5852/ejt.2021.732.1213
  23. Ascensão, Fernando; D'Amico, Marcello; Martins, Ricardo C.; Rebelo, Rui; Barbosa, A. Márcia; Bencatel, Joana; Barrientos, Rafael; et al. "Distribution of alien tetrapods in the Iberian Peninsula". NeoBiota 64 (2021): 1-21. http://dx.doi.org/10.3897/neobiota.64.55597.
    10.3897/neobiota.64.55597
  24. Marques, Isabel; Fernandes, Isabel; David, Pedro H.C.; Paulo OS; Goulao, Luis F.; Fortunato, Ana S.; Lidon, Fernando C.; et al. "Transcriptomic Leaf Profiling Reveals Differential Responses of the Two Most Traded Coffee Species to Elevated [CO2]". International Journal of Molecular Sciences 21 23 (2020): 9211. http://dx.doi.org/10.3390/ijms21239211.
    10.3390/ijms21239211
  25. Marabuto, Eduardo; Pina-Martins, Francisco; Rebelo, Maria Teresa; Paulo OS. "Ancient divergence, a crisis of salt and another of ice shaped the evolution of the west Mediterranean butterflyEuchloe tagis". Biological Journal of the Linnean Society 131 3 (2020): 487-504. http://dx.doi.org/10.1093/biolinnean/blaa129.
    10.1093/biolinnean/blaa129
  26. Macías-Hernández, Nuria; Domènech, Marc; Cardoso, Pedro; Emerson, Brent C.; Borges, Paulo Alexandre Vieira; Lozano-Fernandez, Jesús; Paulo OS; et al. "Building a Robust, Densely-Sampled Spider Tree of Life for Ecosystem Research". Diversity 12 8 (2020): 288. http://dx.doi.org/10.3390/d12080288.
    10.3390/d12080288
  27. Neves, Ana; Vieira, Ana Rita; Sequeira, Vera; Paiva, Rafaela Barros; Gordo, Leonel Serrano; Paulo, Octávio S.. "Highly regional population structure of Spondyliosoma cantharus depicted by nuclear and mitochondrial DNA data". Scientific Reports 10 1 (2020): http://dx.doi.org/10.1038/s41598-020-61050-x.
    10.1038/s41598-020-61050-x
  28. Malumbres-Olarte, Jagoba; Boieiro, Mário; Cardoso, Pedro; Carvalho, Rui; Crespo, Luís Carlos; Gabriel, Rosalina; Macías Hernández, Nuria; et al. "Standardised inventories of spiders (Arachnida, Araneae) of Macaronesia II: The native forests and dry habitats of Madeira archipelago (Madeira and Porto Santo islands)". Biodiversity Data Journal 8 (2020): http://dx.doi.org/10.3897/bdj.8.e47502.
    10.3897/bdj.8.e47502
  29. Silva, Sara E; Seabra, Sofia G; Carvalheiro, Luísa G; Nunes, Vera L; Marabuto, Eduardo; Mendes, Raquel; Rodrigues, Ana S B; et al. "Population genomics of Bombus terrestris reveals high but unstructured genetic diversity in a potential glacial refugium". Biological Journal of the Linnean Society 129 2 (2019): 259-272. http://dx.doi.org/10.1093/biolinnean/blz182.
    10.1093/biolinnean/blz182
  30. Vieites-Blanco, Cristina; Paulo, Octávio S.; Marabuto, Eduardo; Lema, Margarita. "Genetic variability on worldwide populations of the scale insect Pulvinariella mesembryanthemi". Biological Invasions 22 2 (2019): 735-748. http://dx.doi.org/10.1007/s10530-019-02125-3.
    10.1007/s10530-019-02125-3
  31. Paulo OS. "Genome-Wide Signatures of Selection in Colletotrichum kahawae Reveal Candidate Genes Potentially Involved in Pathogenicity and Aggressiveness". Frontiers in Microbiology (2019): http://dx.doi.org/10.3389/fmicb.2019.01374.
    10.3389/fmicb.2019.01374
  32. Paulo OS. "Shortcomings of Phylogenetic Studies on Recent Radiated Insular Groups: A Meta-Analysis Using Cabo Verde Biodiversity". International Journal of Molecular Sciences (2019): http://dx.doi.org/10.3390/ijms20112782.
    10.3390/ijms20112782
  33. Paulo OS. "Genomic signatures of introgression between commercial and native bumblebees, Bombus terrestris , in western Iberian Peninsula—Implications for conservation and trade regulation". Evolutionary Applications (2019): http://dx.doi.org/10.1111/eva.12732.
    10.1111/eva.12732
  34. Francisco Pina-Martins; João Baptista; Georgios Pappas, Jr; Octávio S. Paulo. "New insights into adaptation and population structure of cork oak using genotyping by sequencing". Global Change Biology 25 1 (2019): 337-350. https://doi.org/10.1111/gcb.14497.
    10.1111/gcb.14497
  35. Paulo OS. "Novel insights on colonization routes and evolutionary potential of Colletotrichum kahawae , a severe pathogen of Coffea arabica". Molecular Plant Pathology (2018): http://dx.doi.org/10.1111/mpp.12726.
    10.1111/mpp.12726
  36. Paulo OS. "Population genomic footprints of host adaptation, introgression and recombination in coffee leaf rust". Molecular Plant Pathology (2018): http://dx.doi.org/10.1111/mpp.12657.
    10.1111/mpp.12657
  37. Paulo OS. "Genetic and Genomic Tools to Asssist Sugar Beet Improvement: The Value of the Crop Wild Relatives". Frontiers in Plant Science (2018): http://dx.doi.org/10.3389/fpls.2018.00074.
    10.3389/fpls.2018.00074
  38. Paulo OS. "New data on polymorphism of the meadow spittlebug Philaenus spumarius (L.) (Hemiptera: Aphrophoridae) from the island of São Miguel (Azores)". Zootaxa (2018): http://dx.doi.org/10.11646/zootaxa.4369.1.9.
    10.11646/zootaxa.4369.1.9
  39. Francisco Pina-Martins; Diogo N. Silva; Joana Fino; Octávio S. Paulo. "Structure_threader : An improved method for automation and parallelization of programs structure , fastStructure and MavericK on multicore CPU systems". Molecular Ecology Resources 17 6 (2017): e268-e274. https://doi.org/10.1111/1755-0998.12702.
    10.1111/1755-0998.12702
  40. Silva, S.E.; Silva, D.N.; Almeida, T.; Garcia, C.A.; Paulo, O.S.; Sim-sim, M.. "Age estimates of Frullania (Frullaniaceae, Porellales) main lineages: another example of rapid and recent diversification in liverwort evolution". Systematics and Biodiversity 15 2 (2017): 156-165. http://www.scopus.com/inward/record.url?eid=2-s2.0-84988556686&partnerID=MN8TOARS.
    10.1080/14772000.2016.1217096
  41. Costa, G.J.; Nunes, V.L.; Marabuto, E.; Mendes, R.; Laurentino, T.G.; Quartau, J.A.; Paulo, O.S.; Simoes, P.C.. "Morphology, songs and genetics identify two new cicada species from Morocco: Tettigettalna afroamissa sp. nov. and Berberigetta dimelodica gen. nov. & sp. nov. (Hemiptera: Cicadettini)". Zootaxa 4237 3 (2017): 517-544. http://www.scopus.com/inward/record.url?eid=2-s2.0-85016049342&partnerID=MN8TOARS.
    10.11646/zootaxa.4237.3.4
  42. Lopes-Lima, M.; Froufe, E.; Do, V.T.; Ghamizi, M.; Mock, K.E.; Kebapçi, Ü.; Klishko, O.; et al. "Phylogeny of the most species-rich freshwater bivalve family (Bivalvia: Unionida: Unionidae): Defining modern subfamilies and tribes". Molecular Phylogenetics and Evolution 106 (2017): 174-191. http://www.scopus.com/inward/record.url?eid=2-s2.0-84990840620&partnerID=MN8TOARS.
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  96. Paulo, O.S.; Pinto, I.; Bruford, M.W.; Jordan, W.C.; Nichols, R.A.. "The double origin of Iberian peninsular chameleons". Biological Journal of the Linnean Society 75 1 (2002): 1-7. http://www.scopus.com/inward/record.url?eid=2-s2.0-0036375982&partnerID=MN8TOARS.
    10.1046/j.1095-8312.2002.00002.x
  97. Paulo, O.S.; Dias, C.; Bruford, M.W.; Jordan, W.C.; Nichols, R.A.. "The persistence of Pliocene populations through the Pleistocene climatic cycles: Evidence from the phylogeography of an Iberian lizard". Proceedings of the Royal Society B: Biological Sciences 268 1476 (2001): 1625-1630. http://www.scopus.com/inward/record.url?eid=2-s2.0-0035822655&partnerID=MN8TOARS.
    10.1098/rspb.2001.1706
  98. Viegas-Crespo, A.M.; Pavão, M.L.; Paulo, O.; Santos, V.; Santos, M.C.; Nève, J.. "Trace element status (Se, Cu, Zn) and serum lipid profile in Portuguese subjects of San Miguel Island from Azores' archipelago". Journal of Trace Elements in Medicine and Biology 14 1 (2000): 1-5. http://www.scopus.com/inward/record.url?eid=2-s2.0-0034070132&partnerID=MN8TOARS.
  99. Brito, J.C.; Godinho, R.; Luís, C.; Paulo, O.S.; Crespo, E.G.. "Management strategies for conservation of the lizard Lacerta schreiberi in Portugal". Biological Conservation 89 3 (1999): 311-319. http://www.scopus.com/inward/record.url?eid=2-s2.0-0032924238&partnerID=MN8TOARS.
    10.1016/S0006-3207(99)00002-6
  100. Brito, J.C.; Crespo, E.G.; Paulo, O.S.. "Modelling wildlife distributions: Logistic multiple regression vs overlap analysis". Ecography 22 3 (1999): 251-260. http://www.scopus.com/inward/record.url?eid=2-s2.0-0033011940&partnerID=MN8TOARS.
  101. Brito, J.C.; Paulo, O.S.; Crespo, E.G.. "Distribution and habitats of Schreiber's green lizard (Lacerta schreiberi) in Portugal". Herpetological Journal 8 4 (1998): 187-194. http://www.scopus.com/inward/record.url?eid=2-s2.0-0031676769&partnerID=MN8TOARS.
  102. Brito, J.C.; Abreu, F.B.E.; Paulo, O.S.; Rosa, H.D.; Crespo, E.G.. "Distribution of Schreiber's green lizard (Lacerta schreiberi) in Portugal: A predictive model". Herpetological Journal 6 2 (1996): 43-47. http://www.scopus.com/inward/record.url?eid=2-s2.0-0030028092&partnerID=MN8TOARS.
  103. Brito-e-Abreu, F.; Rosa, H.D.; Paulo, O.S.; Moreira, P.L.; Almeida, A.P.; Crespo, E.G.. "Morphological distinction of Iberian midwife toads: Alytes obstetricans may have two metacarpal tubercles". Amphibia Reptilia 17 1 (1996): 67-70. http://www.scopus.com/inward/record.url?eid=2-s2.0-3242828469&partnerID=MN8TOARS.
  104. Vigas-Crespo, A.M.; Neve, J.; Monteiro, M.L.; Amorim, M.F.; Paulo, O.S.; Halpern, M.J.. "Selenium and lipid parameters in plasma of portuguese subjects". Journal of Trace Elements and Electrolytes in Health and Disease 8 2 (1994): 119-122. http://www.scopus.com/inward/record.url?eid=2-s2.0-0028075660&partnerID=MN8TOARS.
Preprint
  1. Marques, João Pedro; Alves, Paulo Célio; Amorim, Isabel R.; Lopes, Ricardo J.; Moura, Mónica; Meyers, Gene; Sim-Sim, Manuela; et al. "Building a Portuguese Coalition for Biodiversity Genomics". 2023. http://dx.doi.org/10.32942/x20w3q.
    10.32942/x20w3q
Report
  1. Neves, Ana; Vieira, Ana Rita; Gordo, Leonel Serrano; Viegas, Mariana Bray; Paulo, Octavio; Sequeira, Vera. 2023. TUNAPRINT: the tuna behind the can. Final Report. https://ulisboa-my.sharepoint.com/personal/arivieira_fc_ul_pt/_layouts/15/onedrive.aspx?id=%2Fpersonal%2Farivieira%5Ffc%5Ful%5Fpt%2FDocuments%2FAna%20Rita%20Documents%2FPROJECTOS%2FTUNAPRINT%5FOCEAN%C3%81RIO%2FTUNAPRINT%201%2E0%5F2020%2FRELAT%C3%93RIOS%2FRelat%C3%B3rio%20final%2FTUNAPRINT%5FTheTunaBeindTheCan%5FRelatorioFinal%2Epdf&parent=%2Fpersonal%2Farivieira%5Ffc%5Ful%5Fpt%2FDocuments%2FAna%20Rita%20Documents%2FPROJECTOS%2FTUNAPRINT%5FOCEAN%C3%81RIO%2FTUNAPRINT%201%2E0%5F2020%2FRELAT%C3%93RIOS%2FRelat%C3%B3rio%20final.
  2. Sousa, Francisco; Sequeira, V.; Gordo, Leonel Serrano; Paulo, Octavio; Vieira, Ana Rita. 2022. TUNAPRINT 2.0: Molecular identification of tuna species used by the Portuguese canning industry. Progress Report..
  3. Ana Neves; Gordo, Leonel Serrano; Vieira, Ana Rita; Paulo, Octavio; Sequeira, V.. 2021. Characterisation of tuna fishing in Portugal. Technical Report. https://drive.google.com/file/d/1iBl226mVFJLPS01YC10oyaba6kUL1B3S/view?usp=drive_link.
  4. Viegas, Mariana Bray; Sequeira, Vera; Neves, Ana; Gordo, Leonel Serrano; Paulo, Octavio; Vieira, Ana Rita. 2021. Molecular Identification of canned Tuna in Portugal. Technical Report. https://drive.google.com/file/d/11Wj8BAX9YQXmp2ydzvBYpazrUeguikr0/view?usp=drive_link.
  5. Ana Neves; Gordo, Leonel Serrano; Vieira, Ana Rita; Paulo, Octavio; Sequeira, V.. 2021. Characterisation of tuna fishing in Portugal. Task report.. https://drive.google.com/file/d/1iBl226mVFJLPS01YC10oyaba6kUL1B3S/view?usp=drive_link.
  6. Viegas, Mariana; Sequeira, Vera; Neves, Ana; Gordo, Leonel Serrano; Paulo, Octavio; Vieira, Ana Rita. 2021. Molecular Identification of canned Tuna in Portugal. Task Report.. https://drive.google.com/file/d/11Wj8BAX9YQXmp2ydzvBYpazrUeguikr0/view?usp=drive_link.
Thesis / Dissertation
  1. Paulo OS. "The phylogeography of reptiles of the Iberian Peninsula". PhD, Queen Mary University of London, 2001.
  2. Paulo OS. "Estudo Eco-Etológico da população de Lacerta lepida (Daudin 1802) (Sauria, Lacertidae) da Ilha da Berlenga". Degree, Universidade de Lisboa Faculdade de Ciências, 1988.

Other

Dataset
  1. Batista, Dora; Rodrigues, Ana S. B.; Diogo N. Silva; Paulo, Octávio Salgueiro; Varzea, Vitor. RAD-tag sequences of Hemileia vastatrix ENA (European Nucleotide Archive) - https://www.ebi.ac.uk/ena/data/view/PRJEB47473. European Bioinformatics Institute. https://www.ebi.ac.uk/ena/data/view/PRJEB47473.
  2. Batista, Dora; Diogo N. Silva; Paulo, Octávio Salgueiro; Varzea, Vitor. RAD-tag sequences of Hemileia vastatrix ENA (European Nucleotide Archive) - https://www.ebi.ac.uk/ena/data/view/PRJEB26843. European Bioinformatics Institute. https://www.ebi.ac.uk/ena/data/view/PRJEB26843.
Activities

Oral presentation

Presentation title Event name
Host (Event location)
2019/02/22 O mestrado de Bioinformática e Biologia Computacional da Faculdade de Ciências da Universidade de Lisboa
Universidade do Minho (Braga, Portugal)
2017/06/21 Um olhar populacional sobre a genómica de populações naturais
Universidade de Aveiro (Aveiro, Portugal)
2017/05/26 Atividade de investigação do CoBiG2 no Sobreiro. Reunião anual do Centro de Competências do Sobreiro e da Cortiça
Centro de Competências do Sobreiro e da Cortiça (Coruche, Portugal)
2016/08/04 Genómica, RADs e Associação Ambiental
Universidade Eduardo Mondelane (Maputo, Mozambique)
2016/02/23 Biologia da Bata, da Bota e do Byte IV Jornadas de Investigação em Biologia
NebFCUL. Faculdade de Ciências, Universidade de Lisboa, (Lisboa, Portugal)
2015/04/17 The Principle of Divergence Darwin's Legacy Tea Party (Symposium and public debate).
Faculdade de Ciências, Universidade de Lisboa, (Lisboa, Portugal)
2015/04/09 The Computational Biology and Population genomics Group Bioinformatics Open Day
Faculdade de Ciências, Universidade de Lisboa, (Lisboa, Portugal)
2013/07/28 Cork Oak: a new evolutionary perspective on the National tree XIII Congresso Luso-Espanhol de Fisiologia Vegetal
(Lisboa, Portugal)
2013/04/10 Cork Oak: the unknown history of the national tree. Geografia dos Paleoclimas e das Mudanças Climáticas
Faculdade de Letras da Universidade de Lisboa, Instituto de Geografia e Ordenamento do Território (Lisboa, Portugal)
2012/09/22 Phylogenetic Inference 2nd Workshop on Bio-Optimization
(Lisboa, Portugal)
2012/03/29 On the origin of the Iberian Chameleons I Congresso Internacional de Zooarquelogia em Portugal
(Lisboa, Portugal)
2011/10/21 Cork Oak genetic differentiation and diversity Present and Future of Cork Oak in Portugal
(Oeiras, Portugal)
2011/05/02 Do genoma Humano ao genoma de todos
Universidade de Aveiro (Aveiro, Portugal)
2011/04/11 Western Mediterranean Phylogeography: a perspective from several case studies Modern Biogeography - From Phylogeography and Landscape Genetics to Land-use Planning and Management
Sociedade Geográfica de Lisboa (Lisboa, Portugal)
2010/11/22 Biodiversidade e Conservação
Academia das Ciências (Lisboa, Portugal)
2010/08/31 Adaptive significance and genetic basis of a balanced colour-polymorphism 2nd UK RAD Sequencing Meeting
National e-Science Centre (Edimburgo, United Kingdom)
2010/07/05 Aplicação de metodologias genómicas na deteção de polimorfismos no sobreiro Ciência 2010 – Encontro com a Ciência e Tecnologia em Portugal
(Lisboa, Portugal)
2010/06/16 O que há de tão fantástico com a Herpetofauna Ibérica?
Universidade Lusófona (Lisboa, Portugal)
2010/06/14 MSc. Program in Bioinformatics and Computational Biology Translational Bioinformatics in Lisbon
Instituto Gulbenkian de Ciências (Oeiras, Portugal)
2010/02/10 The Computational Biology and Population Genomics Group: a general framework and a case study. Encontros Scientia
Centro de Biologia Ambiental (Lisboa, Portugal)
2009/04/22 Illustrating Evolution: Starting from Darwin’s tree of life to the present molecular phylogenetic trees. DARWIN E A ILUSTRAÇÃO CIENTÍFICA. Colóquio e workshop organizados pelo Projecto “A Imagem na Ciência e na Arte”
Centro de Filosofia das Ciências da Universidade de Lisboa, com o apoio da Ciência Viva. (Lisboa, Portugal)
2009/03/11 O legado de Darwin: as ideias que abalaram o mundo Ciclo de conferências - A rEvolução Darwiniana A rEvolução Darwiniana, session “A evolução como ideia”
Universidade Nova de Lisboa (Portugal)
2002/01/29 É a nested clade analysis eficiente na recuperação da história das populações? Encontros Scientia
Centro de Biologia Ambiental (Lisboa, Portugal)
2000/03/01 The role of Pleistocene climatic conditions on the evolutionary history of an Iberian lizard Lacerta schreiberi.
Queen Mary and Westfield College, University of London (Londres, United Kingdom)
1999/11/05 The role of Pleistocene climatic conditions on the evolutionary history of an Iberian lizard Lacerta schreiberi
University of Cardiff (Cardiff, United Kingdom)
1999/11/02 Comparative Phylogeography of two Iberian Lizards
Queen Mary and Westfield College, University of London, (Londres, United Kingdom)
1999/10/28 Comparative Phylogeography of two Iberian Lizards
Institute of Zoology (Londres, United Kingdom)
1996/03/03 Chameleons situation in southern Portugal
Grupo de conservação da Sociedade Europeia de Herpetologia (Olhão, Portugal)
1996/02/08 Conservação de Anfíbios e Répteis VII Curso de Atualização em Ecologia e Conservação da Natureza
Liga para a Protecção da Natureza (Lisboa, Portugal)

Supervision

Thesis Title
Role 		Degree Subject (Type)
Institution / Organization
2022 - Current Disentangling the Euro-scorpion: Evolution and diversification of Euscorpius sensu lato across Europe based on genomics, morphology and venom. FCT - 2021.04967.BD
Co-supervisor
Universidade de Lisboa Faculdade de Ciências, Portugal
2022 - Current Genomic prediction of Oaks response to climate change. FCT 2021.08758.BD
Supervisor
Universidade de Lisboa Faculdade de Ciências, Portugal
2020 - Current Molecular Markers associated to the cynaropicrin trait in portuguese cardoon population. SFRH/BD/145383/2019
Supervisor of Ana Filipa Paulino
Universidade de Lisboa Faculdade de Ciências, Portugal
2020 - 2021 Assessing and comparing applications of molecular clocks to phylogenetic datasets.
Supervisor
 Bioinformática e Biologia Computacional (Master)
Universidade de Lisboa Faculdade de Ciências, Portugal
2019 - 2021 RNA-Seq for the detection of differential expressed genes under several experimental conditions
Supervisor of Isabel Cristina Moniz Fernandes
 Bioinformática e Biologia Computacional (Master)
Universidade de Lisboa Faculdade de Ciências, Portugal
2019 - 2021 Impact of agricultural expansion in the neutral and adaptive genetic variability of wild bees.
Supervisor of André Filipe Ribeiro Henriques
 Biologia Evolutiva e do Desenvolvimento (Master)
Universidade de Lisboa Faculdade de Ciências, Portugal
2019 - 2021 Genetic diversity and structure of wild bee species with different life-history traits
Supervisor of Paulo Miguel Pinheiro de Sousa
 Biologia Evolutiva e do Desenvolvimento (Master)
Universidade de Lisboa Faculdade de Ciências, Portugal
2016 - 2021 Mechanisms promoting diversity and speciation of western Mediterranean cicadas: a multidisciplinar analysis using phenotypic, genetic and ecological data. PD/BD/106040/2015
Co-supervisor
Universidade de Lisboa Faculdade de Ciências, Portugal
2016 - 2021 Unravelling patterns of population structure and environmental adaptation in Iberian bumblebees: an ecological genomic approach. PD/BD/113548/2015
Supervisor
Universidade de Lisboa Faculdade de Ciências, Portugal
2015 - 2021 From the past to the future. Phylogeographical and speciation patterns in Atlanto-Mediterranean Butterflies and the definition of hotspots of biodiversity in the context of global change. SFRH/BD/102801/2014
Supervisor of Eduardo M. Marabuto
Universidade de Lisboa Faculdade de Ciências, Portugal
2019 - 2020 Recovery of cyanobacterial draft genomes from a metagenome dataset: Applications to the detection of antibiotic resistance variants.
Supervisor
 Biologia Humana e Ambiente (Master)
Universidade de Lisboa Faculdade de Ciências, Portugal
2018 - 2019 Development of a mobile application for georeferenced data collection in the field.
Supervisor
 Bioinformática e Biologia Computacional (Master)
Universidade de Lisboa Faculdade de Ciências, Portugal
2017 - 2019 Phylogenetics and morphological study of the Iberian flightless Tachydromiini (Diptera: Hybotidae) unveil overlooked diversity
Supervisor
 Biologia da Conservação (Master)
Universidade de Lisboa Faculdade de Ciências, Portugal
2017 - 2019 Understanding the differentiation process of western Mediterranean butterflies: the case studies of Lycaena and Melanargia.
Supervisor
 Biologia Evolutiva e do Desenvolvimento (Master)
Universidade de Lisboa Faculdade de Ciências, Portugal
2012 - 2018 Genome wide approach to understand the evolution of virulence in the rust pathogen Hemileia vastatrix at macro- and micro-evolutionary scales. SFRH/BD/89397/2012
Co-supervisor
Universidade de Lisboa Faculdade de Ciências, Portugal
2012 - 2018 Unraveling the genomics of adaptation of Colletotrichum kahawae to Coffea Arabica. SFRH/BD/89397/2012
Co-supervisor
Universidade de Lisboa Faculdade de Ciências, Portugal
2016 - 2017 Classificação taxonómica de procariotas com base em sequências simuladas do gene 16S rRNA.
Supervisor
 Bioinformática e Biologia Computacional (Master)
Universidade de Lisboa Faculdade de Ciências, Portugal
2016 - 2017 Comparative genomic analyses of cyanobacteria.
Supervisor
 Biologia Evolutiva e do Desenvolvimento (Master)
Universidade de Lisboa Faculdade de Ciências, Portugal
2016 - 2017 Dating evolution on island ecosystems: a case-study with the Cape Verde terrestrial biodiversity.
Co-supervisor
 Bioinformática e Biologia Computacional (Master)
Universidade de Lisboa Faculdade de Ciências, Portugal
2015 - 2017 Integrative approach unravels the evolutionary history of Western Mediterranean small cicadas (Hemiptera: Cicadettini).
Co-supervisor
 Biologia Evolutiva e do Desenvolvimento (Master)
Universidade de Lisboa Faculdade de Ciências, Portugal
2011 - 2017 Analyses of the genomic variation to study the Cork Oak evolution and adaptation: from past to future climatic changes. SFRH/BD/51411/2011
Supervisor
Universidade de Lisboa Faculdade de Ciências, Portugal
2011 - 2016 Genetic Basis of Colour Polymorphism in Philaenus species. SFRH/BD/73879/2010
Co-supervisor
Universidade de Lisboa Faculdade de Ciências, Portugal
2014 - 2015 The phylogeography of Sphoeroides testudineus (Tetraodontiformes: Tetraodontidae). Doutoramento Sanduiche BEX5551/14-5, 2014/2015. Ph.D. in the post-graduation program in Enviromental Biology, Universidade Federal do Pará.
Co-supervisor
Universidade Federal do Oeste do Pará, Brazil
2013 - 2015 Assessing the speciation continuum in Timon lepidus
Supervisor
 Biologia Evolutiva e do Desenvolvimento (Master)
Universidade de Lisboa Faculdade de Ciências, Portugal
2012 - 2015 Signatures of natural selection in the adaptive immune system of primates.
Co-supervisor
 Bioinformática e Biologia Computacional (Master)
Universidade de Lisboa Faculdade de Ciências, Portugal
2013 - 2014 Analysis of RNA-seq data from the interaction of Coffea spp. - Colletotrichum kahawae.
Supervisor
 Bioinformática e Biologia Computacional (Master)
Universidade de Lisboa Faculdade de Ciências, Portugal
2012 - 2013 Genotipagem da mutação G829A no gene da piruvato quinase em indivíduos da Guiné-Bissau e sua associação com a malária.
Supervisor
 Biologia Humana e Ambiente (Master)
Universidade de Lisboa Faculdade de Ciências, Portugal
2010 - 2011 On the evolutionary history of the Iberian Sooty Copper butterflies.
Co-supervisor
 Biologia Evolutiva e do Desenvolvimento (Master)
Universidade de Lisboa Faculdade de Ciências, Portugal
2010 - 2011 Phylogeny and phylogeography of Atlantic Islands’ Columba species.
Co-supervisor
 Biologia Humana e Ambiente (Master)
Universidade de Lisboa Faculdade de Ciências, Portugal
2010 - 2011 Contribuição para uma Estratégia de Conservação para o Camaleão-Comum Chamaeleo Chamaeleon (Linnaeus, 1758) no sul de Portugal.
Co-supervisor
 Biologia da Conservação (Master)
Universidade de Lisboa Faculdade de Ciências, Portugal
2010 - 2011 Assessing adaptive genetic variation in cork oak expressed genes.
Co-supervisor
 Biologia Evolutiva e do Desenvolvimento (Master)
Universidade de Lisboa Faculdade de Ciências, Portugal
2009 - 2011 Genetic variation in two littorinid gastropods along the East African coast:comparison with morphological data
Co-supervisor
 Biologia Evolutiva e do Desenvolvimento (Master)
Universidade de Lisboa Faculdade de Ciências, Portugal
2009 - 2011 Differentiation and genetic variability in cork oak populations (Quercus suber L.).
Co-supervisor
 Biologia Humana e Ambiente (Master)
Universidade de Lisboa Faculdade de Ciências, Portugal
2008 - 2011 Comparative analysis of 454 pyrosequencing data from coffee transcriptomes.
Co-supervisor
 Bioinformática e Biologia Computacional (Master)
Universidade de Lisboa Faculdade de Ciências, Portugal
2006 - 2011 Speciation in spatially structured populations: identifying genes responsible for local adaptation. SFRH/BD/21306/2005
Supervisor
Universidade de Lisboa Faculdade de Ciências, Portugal
2009 - 2010 Analysis of the neutral and adaptive genetic variation of Colletotrichum kahawae and its relationship with the C. gloeosporioides complex.
Co-supervisor
 Biologia Humana e Ambiente (Master)
Universidade de Lisboa Faculdade de Ciências, Portugal
2009 - 2010 Identification and expression analysis of genes putatively involved in pathogenicity of Hemileia vastatrix to Coffea Arabica.
Co-supervisor
 Biologia Humana e Ambiente (Master)
Universidade de Lisboa Faculdade de Ciências, Portugal
2009 - 2010 Estudo dos padrões filogenéticos e Filogeográficos em Philaenus spumarius (Hemiptera, Aphrophoridae) e espécies próximas
Co-supervisor
 Biologia Evolutiva e do Desenvolvimento (Master)
Universidade de Lisboa Faculdade de Ciências, Portugal
2008 - 2010 Validação da associação entre SNPs e a enfarte agudo do miocárdio.
Supervisor
 Biologia Humana e Ambiente (Master)
Universidade de Lisboa Faculdade de Ciências, Portugal
2008 - 2009 Biologia e genética da Conservação da Branca-Portuguesa, Euchloe tagis (Hübner, 1804) em Portugal (Lepidoptera: Pieridae).
Supervisor
 Biologia da Conservação (Master)
Universidade de Lisboa Faculdade de Ciências, Portugal
2008 - 2009 Caracterização de Microssatelites em espécies de ambientes humanizados
Co-supervisor
 Biologia Humana e Ambiente (Master)
Universidade de Lisboa Faculdade de Ciências, Portugal
2005 - 2009 Phylogeography and population dynamics of secondary contact zones of Lacerta lepida in the Iberian Peninsula. SFRH/BD/16996/2004
Co-supervisor
University of East Anglia, United Kingdom

Universidade de Lisboa Faculdade de Ciências, Portugal
2007 - 2008 Estudo da diferenciação de espécies Moçambicanas do Género Conus (Conidae, Gastropoda).
Supervisor
 Biologia da Conservação (Master)
Universidade de Lisboa Faculdade de Ciências, Portugal
2006 - 2007 Filogeografia da espécie Psammodromus algirus.
Supervisor
 Biologia Evolutiva e do Desenvolvimento (Master)
Universidade de Lisboa Faculdade de Ciências, Portugal
2006 - 2007 Análise da estrutura genética do Lagarto de água, Lacerta schreiberi - implicações conservacionistas de um endemismo Ibérico.
Supervisor
 Biologia da Conservação (Master)
Universidade de Lisboa Faculdade de Ciências, Portugal
2003 - 2005 Aplicações de análise multivariada para o estudo da utilização de habitats em espécies de répteis
Supervisor
Universidade de Lisboa Faculdade de Ciências, Portugal
2003 - 2005 Evaluation of Nested Clade Phylogeographical Analysis using simulated DNA sequence data with different population structures and histories
Supervisor
Universidade de Lisboa Faculdade de Ciências, Portugal

Event organisation

Event name
Type of event (Role) 		Institution / Organization
2012/03/01 - 2013/12/31 Chairman da organização do XIV Congresso da European Society for Evolutionatry Biology (2013/08/19 - 2013/08/24)
Congress (President of the Organising Committee)

Jury of academic degree

Topic
Role 		Candidate name (Type of degree)
Institution / Organization
2020 Divergent selection and reproductive isolation: an empirical study on reed buntings
(Thesis) Arguer
 Luís de Oliveira Rijo Gordinho (PhD)
Universidade do Porto Faculdade de Ciências, Portugal
2019 Rna-seq applied to the peacock blenny salaria pavo: unveiling the gene networks and signalling pathways behind phenotypic plasticity in a littoral fish
(Thesis) Main arguer
 Sara de Jesus Dias Cardoso (PhD)
Universidade do Algarve - Campus de Gambelas, Portugal
2019 Systematics and Biogeography of selected reptiles from North Africa
(Thesis) Arguer
 Luis Carlos Rodrigues Machado (PhD)
Universidade do Porto Faculdade de Ciências, Portugal
2018 Diversity, cryptic species and sexual strategies in fungi of the order Botryosphaeriales
(Thesis) Arguer
 Anabela Rodrigues Lopes (PhD)
Universidade de Aveiro, Portugal
2018 Genetic and Ecological Consequences of a shifted phenology in a forest defoliator
(Thesis) Arguer
 Susana Cristina Machado Rocha (PhD)
Universidade de Lisboa Instituto Superior de Agronomia, Portugal
2017 Unravelling mechanisms of reproductive isolation between two sister species of Iberian voles.
(Thesis) Arguer
 Margarida Alexandra Duarte (PhD)
Universidade de Lisboa Faculdade de Ciências, Portugal
2016 Tracking Evolutionary paths in colonizing events: temporal changes in life-history traits, microsatellites and invasions in Drosophila subobscura
Thesis Member
 Josiane Santos (PhD)
Universidade de Lisboa Faculdade de Ciências, Portugal
2015 Studies on the Eucalyptus Leaf Disease Complex in Portugal.
Thesis Member
 Márcia Silva (PhD)
Universidade NOVA de Lisboa Faculdade de Ciências e Tecnologia, Portugal
2014 Filoegenia e filogeografia do subgénero Narcissus L.
(Thesis) Main arguer
 João Paulo Fonseca (PhD)
Universidade de Lisboa Instituto Superior de Agronomia, Portugal
2014 Strategies for Conservation of Rare and Endemic Species: Characterization of Genetic and Epigenetic Variation and Unusual Reproductive Biology of Coastal Species from Limonium ovalifolium and Limonium binervosum Complexes (Plumbaginaceae).
(Thesis) Main arguer
 Ana Sofia Róis (PhD)
Universidade de Lisboa Instituto Superior de Agronomia, Portugal
2014 How historical and presente climate conditions affected the distribution of the mediterranean water shrew? A phylogeographical and ecological approach
Thesis Member
 Joaquim Tapisso (PhD)
Universidade de Lisboa Faculdade de Ciências, Portugal
2013 Phytochemical and genetic diversity in Mentha species: assesment, valorization and conservation
(Thesis) Main arguer
 Leandra Rodrigues (PhD)
Universidade de Lisboa Instituto Superior de Agronomia, Portugal
2013 Pyruvate kinase and glucose-6-phosphate dehydrogenase deficiencies and their association with malaria – populations genetics and proteomic studies
Thesis Member
 Patricia Machado (PhD)
Universidade Nova de Lisboa Instituto de Higiene e Medicina Tropical, Portugal
2012 Tardigrada: a study on integrative taxonomy, impacts on biodiversity and concerns with conservation
Thesis Member
 Filipe Vicente (PhD)
Universidade de Lisboa Faculdade de Ciências, Portugal
2011 Nucella lapillus: imposex transcriptome analysis and phenotypic plasticity
(Thesis) Main arguer
 Sónia Pascoal (PhD)
Universidade de Aveiro, Portugal
2010 Inference of admixture and population size changes in structured populations with applications to conservation genetics.
Thesis Member
 Vitor Sousa (PhD)
Universidade de Lisboa Faculdade de Ciências, Portugal
2008 Molecular and Acoustic Signal Evolution in Mediterranean Species of Cicada L. (Insecta: Cicadoidea).
Thesis Member
 Gabriela Juma (PhD)
Universidade de Lisboa Faculdade de Ciências, Portugal
2007 Evolutionary Dynamics in Drosophila subobscura – Analyses of the Life history Traits and Microsatellite Loci during Laboratory Adaptation
Thesis Member
 Pedro Simões (PhD)
Universidade de Lisboa Faculdade de Ciências, Portugal
2006 Patterns of Divergence of two Mediterranean Species of Genus Cicada L. (Hemiptera, Cicadidae) Based on the Microsatellite Genetic Markers and acoustic data
Thesis Member
 Sofia Seabra (PhD)
Universidade de Lisboa Faculdade de Ciências, Portugal
2005 Caracterização molecular e conservação da biodiversidade de três espécies do género Echium (E. hypertropicum, E. stenosiphon e E. vulcanorum) endémicas de Cabo Verde.
Thesis Member
 Maria Romeiras (PhD)
Universidade de Lisboa Faculdade de Ciências, Portugal
2003 História Evolutiva do Lagarto-de água, Lacerta schreiberi, Análise filogenética reconstrução os processos de expansão, contracção e miscigenação populacional, e integração no contexto da evolução biogeográfica do Noroeste da Península Ibérica
Thesis Member
 Raquel Godinho (PhD)
Universidade de Lisboa Faculdade de Ciências, Portugal

Conference scientific committee

Conference name Conference host
2019/07/29 - 2019/08/02 15º Congresso da Federação Europeia de Ecologia Faculdade de Ciências, Universidade de Lisboa,
2018/11/08 - 2018/11/09 2º Colóquio sobre a Flora e a Fauna dos Montados Grandola
2013/08/19 - 2013/08/24 XIV Congresso da European Society for Evolutionatry Biology Faculdade de Ciências, Universidade de Lisboa,
Distinctions

Other distinction

1994 Bolsa Invotan 12/A/94/PO
NATO, Belgium
1993 Ações Integradas Luso-britânicas
British Council, Portugal
1992 Financial support for participation in “The Fourth International Behavioral Ecology Congress”, University of Princepton, USA
Fundação Luso-Americana, Portugal
1989 Bolsa de Doutoramento no país
Instituto Nacional de Investigação Científica , Portugal
1986 Bolsa de Iniciação à Investigação
Instituto Nacional de Investigação Científica , Portugal