Identification
Personal identification
- Full name
- Ricardo Filipe Serrote Ramiro
Citation names
- Ramiro, Ricardo S
Author identifiers
- Ciência ID
- 4A14-602C-71EC
- ORCID iD
- 0000-0002-4834-6997
Email addresses
- ricardo.ramiro@iplantprotect.pt (Professional)
Knowledge fields
- Exact Sciences - Computer and Information Sciences - Bioinformatics
- Natural sciences - Biological Sciences - Microbiology
- Natural sciences - Biological Sciences - Evolutionary Biology
Languages
Language | Speaking | Reading | Writing | Listening | Peer-review |
---|---|---|---|---|---|
Portuguese (Mother tongue) | |||||
English | Proficiency (C2) | Advanced (C1) | Proficiency (C2) | Proficiency (C2) | Proficiency (C2) |
Spanish; Castilian | Beginner (A1) | Intermediate (B1) | Beginner (A1) | Beginner (A1) |
Education
Degree | Classification | |
---|---|---|
2008/04/01 - 2012/11/30
Concluded
|
PhD in Evolutionary Biology (Doctor of Philosophy)
Major in Evolutionary Biology
The University of Edinburgh School of Biological Sciences, United Kingdom
"Evolution and ecology of malaria parasites: from mating to mixed-species infections" (THESIS/DISSERTATION)
|
Approved |
2002/09 - 2007/08/02
Concluded
|
Licenciatura em Biologia (Licenciatura)
Major in Biology
Universidade Lusófona de Humanidades e Tecnologias, Portugal
"Evolutionary ecology of transmission in rodent malaria parasites: how social and environmental factors influence sexual reproduction?" (THESIS/DISSERTATION)
|
16 (0-20) |
Affiliation
Science
Category Host institution |
Employer | |
---|---|---|
2020/01/01 - 2020/12/31 | Postdoc (Research) | Instituto Gulbenkian de Ciência, Portugal |
2017/04/01 - 2019/12/31 | Postdoc (Research) | Instituto Gulbenkian de Ciência, Portugal |
2016/01/01 - 2017/03/31 | Postdoc (Research) | Instituto Gulbenkian de Ciência, Portugal |
2012/09/01 - 2015/12/31 | Postdoc (Research) | Instituto Gulbenkian de Ciência, Portugal |
Instituto Gulbenkian de Ciência, Portugal | ||
2007/09/01 - 2007/10/31 | Contracted Researcher (Research) | The University of Edinburgh, United Kingdom |
The University of Edinburgh Institute of Evolutionary Biology, United Kingdom | ||
2006/11/01 - 2007/05/01 | Research Trainee (Research) | The University of Edinburgh, United Kingdom |
The University of Edinburgh Institute of Evolutionary Biology, United Kingdom |
Positions / Appointments
Category Host institution |
Employer | |
---|---|---|
2021/01/01 - Current | Organic Unit Director | InnovPlantProtect CoLab, Portugal |
InnovPlantProtect CoLab, Portugal |
Projects
Grant
Designation | Funders | |
---|---|---|
2023/09/01 - 2026/08/31 | AlmondProtect: Diagnóstico, epidemiologia, monitorização e previsão das principais doenças que afetam o amendoal: Uma proposta
sustentável e integrada
PD23-00014
InnovPlantProtect CoLab, Portugal
Universidade de Évora, Portugal |
Fundação 'la Caixa' Fundação para a Ciência e Tecnologia Ongoing
|
2023/01/01 - 2025/12/31 | Pacto da Bioeconomia Azul
Researcher
|
Governo da República Portuguesa European Union Ongoing
|
2023/01/01 - 2025/12/31 | InsectERA
Researcher
|
Governo da República Portuguesa European Union Ongoing
|
2023/01/01 - 2025/12/31 | SNM_XylellaVt - Sistema Nacional de Monitorização de Insetos Vetores da Xylella fastidiosa
NA
Researcher
|
European Union Governo da República Portuguesa Ongoing
|
2022/09/01 - 2025/08/31 | AlViGen: Creation of a genomic surveillance hub for diseases in agriculture in Alentejo (Portugal)
Principal investigator
InnovPlantProtect CoLab, Portugal
Universidade de Évora, Portugal |
BPI Fundação para a Ciência e Tecnologia Ongoing
|
2023/01/01 - 2023/12/31 | MoniTREEng – Monitorização da saúde, produtividade e regeneração natural dos Quercus sp.
Researcher
InnovPlantProtect CoLab, Portugal
|
European Union
Concluded
|
2022/12/01 - 2023/12/31 | ABC - AgriBioCircular
ABC_065
Researcher
InnovPlantProtect CoLab, Portugal
|
Concluded
|
2021/09/01 - 2022/05/31 | DIMAP: A digital ecosystem for integrated disease management in pear orchards
818182
Principal investigator
InnovPlantProtect CoLab, Portugal
|
European Union
Ongoing
|
2017/01/01 - 2020/12/31 | An OMICS Network to Prevent and Control Infectious Diseases and Antimicrobial Resistance (ONEIDA)
SAICTPAC/0015/2015
Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica António Xavier, Portugal
|
Concluded
|
2017/04 - 2020/03 | Causes and consequences of high mutation rates within the gut microbiota
SFRH/BPD/119110/2016
Instituto Gulbenkian de Ciência, Portugal
|
Fundação para a Ciência e Tecnologia |
2008/04 - 2012/04 | Evolution and Ecology of Malaria Parasites: from Mating to Mixed-Species Infections
SFRH/BD/39960/2007
|
Fundação para a Ciência e Tecnologia |
Contract
Designation | Funders | |
---|---|---|
2019 - 2020 | In vivo Long Term Evolution of a commensal in the Gut Microbiota
623877
Post-doc Fellow
Fundação Calouste Gulbenkian, Portugal
|
The Global Grants for Gut Health (by Yakult and Nature Research) |
2016/01/31 - 2017/03/31 | Predictability in Evolution
CRC 1310
Post-doc Fellow
Instituto Gulbenkian de Ciência, Portugal
|
German Science Foundation: COOPERATION AGREEMENT COLOGNE; Fundação Calouste Gulbenkian/ Universidade de Colónia |
2012/09/01 - 2015/12/31 | Microbial adaptation within ecosystems
ECOADAPT-260421
Post-doc Fellow
Instituto Gulbenkian de Ciência, Portugal
|
European Research Council |
2008 - 2012 | Understanding phenotypic plasticity in the reproductive strategies of malaria parasites
WT082234MA
PhD Student Fellow
The University of Edinburgh, United Kingdom
|
Wellcome Trust |
2007/09/01 - 2007/10/31 | Evolution of mating tactics and reproductive strategies in protozoan parasites
NE/E000886/1
Researcher
The University of Edinburgh, United Kingdom
|
Natural Environment Research Council |
Outputs
Publications
Conference poster |
|
Journal article |
|
Magazine article |
|
Activities
Oral presentation
Presentation title | Event name Host (Event location) |
|
---|---|---|
2023/10/27 | Microbiome analysis as a service in agriculture: challenges and opportunities | 2nd Microbiome PT Summit
(Portugal)
|
2018 | Insisting on the error: On the emergence and maintenance of high mutation rates within the gut microbiota | Annual Meeting of the Portuguese Genetics Society
Portuguese Genetics Society (Porto, Portugal)
|
2017 | Insisting on the error: On the emergence and maintenance of high mutation rates within the gut microbiota | Post-doc seminar at Instituto Gulbenkian de Ciência
Instituto Gulbenkian de Ciência (Oeiras, Portugal)
|
2015 | Small but mighty: genetic and phenotypic basis of Escherichia coli small-colony variants | Post-doc seminar at Instituto Gulbenkian de Ciência
Instituto Gulbenkian de Ciência (Oeiras, Portugal)
|
2015 | Small but mighty: genetic and phenotypic basis of Escherichia coli small-colony variants | EMBO Workshop: Measuring intraspecies diversity using highthroughput sequencing
European Molecular Biology Organization (Oeiras, Portugal)
|
2012 | Sex and species recognition in Plasmodium | 50th Spring Meeting of the British Society for Parasitology
British Society for Parasitology (Glasgow, United Kingdom)
|
2011 | Facilitation through altered resource availability in a mixed-species rodent malaria infection | Evolution of Infectious Diseases: Integrating Empirical Data and Modeling Approaches
National Evolutionary Synthesis Center (Durham, United States)
|
2010 | Sex in Malaria Parasites: the Ecology and Evolution of Species Recognition | 12th International Congress of Parasitology
World Federation of Parasitology (Melbourne, Australia)
|
2009 | Sexual reproduction in malaria parasites: hybridization and the effects of innate immune factors | Luso-American Development Foundation Malaria Conference
Luso-American Development Foundation (Lisbon, Portugal)
|
2008 | Sexual reproduction in malaria parasites: hybridization and the effects of innate immune factors | XIV European Meeting for PhD Students in Evolutionary Biology
(Einsiedeln, Switzerland)
|
Supervision
Thesis Title Role |
Degree Subject (Type) Institution / Organization |
|
---|---|---|
2023/09/01 - 2024/06/30 | Desenvolvimento de um grafo de conhecimento para um sistema de recomendação de agentes de controle biológico contra patógenos
de plantas
Co-supervisor
|
Mestrado em Engenharia Informática (Master)
Universidade de Lisboa, Portugal
|
2021/09/01 - 2022/12/01 | Modeling the dynamics of leafhopper pest in vineyards
Supervisor
|
Mestrado em Estatística para Ciência de Dados (Master)
Universidade do Minho, Portugal
|
2018 - 2018 | Effect of phages on mutation rate | IGC Undergraduate Summer School (Specialization course)
Instituto Gulbenkian de Ciência, Portugal
|
2012 - 2013 | Macrophage adapted Escherichia coli Small Colony Variants are Genetically Diverse and Present Antagonistic Pleiotropy for
Antibiotic Resistance
Supervisor
|
Masters in Evolutionary Biology and Development (Master)
Instituto Gulbenkian de Ciência, Portugal
Universidade de Lisboa Faculdade de Ciências, Portugal |
2011 - 2011 | Competition and red blood cell preference in malaria parasites
Co-supervisor
|
Biology honors (Degree)
The University of Edinburgh, United Kingdom
|
2011 - 2011 | Competition and red blood cell preference in malaria parasites
Co-supervisor
|
Biology honors (Degree)
The University of Edinburgh, United Kingdom
|
2010 - 2010 | Competition and life-history evolution in malaria parasites
Co-supervisor
|
Biology Honors (Degree)
The University of Edinburgh, United Kingdom
|
2009 - 2009 | Effect of nitric oxide on the fertility of malaria parasites
Co-supervisor
|
Biology Honors (Degree)
The University of Edinburgh, United Kingdom
|
Event organisation
Event name Type of event (Role) |
Institution / Organization | |
---|---|---|
2017 - 2018 | IGC symposium 2018: Microbial Eco-Evolutionary Dynamics (2018/10/22 - 2018/10/24)
Conference (Co-organisor)
|
Instituto Gulbenkian de Ciência, Portugal |
2016 - 2018 | Evolution club: I organized a journal club, involving 5 research groups from Instituto Gulbenkian de Ciência that are working
in evolutionary biology (the different groups have expertise in different areas, from experimental work to the development
of theory and bioinformatics methods). (2016 - 2018)
Meeting (Co-organisor)
|
|
2014 - 2014 | X national Meeting in Evolutionary Biology (2014/12 - 2014/12)
Conference (Co-organisor)
|
Instituto Gulbenkian de Ciência, Portugal |
2013 - 2013 | IX national Meeting in Evolutionary Biology (2013/12 - 2013/12)
Conference (Co-organisor)
|
Instituto Gulbenkian de Ciência, Portugal |
2013 - 2013 | IGC Post-doctoral meeting (2013/10 - 2013/10)
Conference (Co-organisor)
|
Instituto Gulbenkian de Ciência, Portugal |
2012 - 2012 | VIII National Meeting in Evolutionary Biology (2012/12 - 2012/12)
Conference (Co-organisor)
|
Instituto Gulbenkian de Ciência, Portugal |
Event participation
Activity description Type of event |
Event name Institution / Organization |
|
---|---|---|
2018 - 2018 | ONEIDA Genomics Workshop
Workshop
|
ONEIDA Genomics Workshop
Instituto Gulbenkian de Ciência, Portugal
|
2015 - 2015 | EMBO Workshop: Measuring Intra-Species Diversity Using High-Throughput Sequencing
Workshop
|
EMBO Workshop: Measuring Intra-Species Diversity Using High-Throughput Sequencing
European Molecular Biology Organization, Germany
|
2015 - 2015 | Forecasting Evolution? conference
Conference
|
Forecasting Evolution? conference
Instituto Gulbenkian de Ciência, Portugal
|
2013 - 2013 | XIV European Society of Evolutionary Biology Meeting
Conference
|
XIV European Society of Evolutionary Biology Meeting |
2012 - 2012 | XII European Society of Evolutionary Biology Meeting
Conference
|
|
2011 - 2011 | Silwood Statistics R language Course
Workshop
|
Silwood Statistics R language Course
Imperial College London Department of Life Sciences, United Kingdom
|
2011 - 2011 | VII National Meeting in Evolutionary Biology
Conference
|
VII National Meeting in Evolutionary Biology |
2011 - 2011 | Jacques Monod Conference: Coevolutionary arms race between parasite virulence and host immune defence: challenges from state
of the art research
Conference
|
|
2011 - 2011 | VII BioMalPar: Biology and Pathology of the Malaria Parasite
Conference
|
European Molecular Biology Laboratory, Italy
|
2009 - 2009 | 47th Spring Meeting of the British Society for Parasitology | |
2009 - 2009 | Centre for Immunity, Infection and Evolution winter symposium: What limits host range?
Conference
|
Centre for Immunity, Infection and Evolution winter symposium: What limits host range?
The University of Edinburgh, United Kingdom
|
2009 - 2009 | Summer Meeting of the Association for the Study of Animal Behaviour
Conference
|
Summer Meeting of the Association for the Study of Animal Behaviour
University of Oxford, United Kingdom
|
2008/04 - 2008/04 | Animal Handling Course
Workshop
|
Animal Handling Course
The University of Edinburgh, United Kingdom
|
2008 - 2008 | Winter Meeting of the Association for the Study of Animal Behaviour
Conference
|
The University of Edinburgh, United Kingdom
|
Jury of academic degree
Topic Role |
Candidate name (Type of degree) Institution / Organization |
|
---|---|---|
2015 | Helicobacter hepaticus colonization in mice: newborn tolerance properties and distribution throughout the gut
(Thesis) Main arguer
|
Masters in Evolutionary Biology and Development (Master)
Universidade de Lisboa Faculdade de Ciências, Portugal
|
Association member
Society Organization name | Role | |
---|---|---|
2018 - Current | European Society for Evolutionary Biology | |
2012 - Current | Portuguese Association for Evolutionary Biology |
Committee member
Activity description Role |
Institution / Organization | |
---|---|---|
2012/10 - 2013/10 | Comité de pós-doutorandos do Instituto Gulbenkian de CiÊncia
Member
|
|
2008 - 2011 | “Press Gang”: a group of researchers whose aim was to help other researchers writing press releases
Member
|
The University of Edinburgh, United Kingdom |
Course / Discipline taught
Academic session | Degree Subject (Type) | Institution / Organization | |
---|---|---|---|
2018 - 2018 | Taught a class (1h) on the course: Genomics Microbiomes and Parasites | Masters in molecular Technologies in Health | Instituto Politécnico de Lisboa Escola Superior de Tecnologia da Saúde de Lisboa, Portugal |
2015 - 2015 | Taught a class (2h) on the Instituto Gulbenkian de Ciência PhD programme. | (Doutoramento) | Instituto Gulbenkian de Ciência, Portugal |
2014 - 2014 | I was involved in the development and teaching of the workshop: “Inspirar a ciência: ensinar biologia evolutiva a professores do ensino secundário”. In this workshop, we created a series of theoretical and pratical classes to demonstrate several key principles of evolutionary biology to high school biology teachers. | (Outros) | Instituto Gulbenkian de Ciência, Portugal |
2011 - 2011 | Taught a class (1.5h) on the course: Evolutionary Ecology of Hosts and Parasites (4th year biology students) | The University of Edinburgh, United Kingdom | |
2009 - 2011 | Evolution in Action | Biology (Bachelor (1st cycle)) | The University of Edinburgh, United Kingdom |
Interview (newspaper / magazine)
Activity description | Newspaper / Forum | |
---|---|---|
2016 | Resistência de bactérias aos antibióticos e ao sistema imunitário está interligada | SIC Notícias |
2016 | Ratinhos explicam por que resistem as bactérias | TVI24 |
2016 | Resistência de bactérias aos antibióticos e ao sistema imunitário está interligada | SAPO |
2016 | Resistência de bactérias aos antibióticos e ao sistema imunitário está interligada | Diário de Notícias |
2016 | Investigação confirma relação entre resistência de bactérias a antibióticos e ao sistema imunitário | Jornal do Enfermeiro |
2016 | Macrophages Induce Antibiotic Resistance | BioTechniques |
2016 | Cuando los parásitos de malaria trabajan en equipo, las consecuencias son peores | Scientific American |
Journal scientific committee
Journal title (ISSN) | Publisher | |
---|---|---|
2018 - Current | Scientific Reports (2045-2322) | Springer Nature |
2018 - Current | Nature Microbiology (2058-5276) | Springer Nature |
2018 - Current | Cell Host & Microbe (1931-3128) | Elsevier |
2016 - Current | Infectious Diseases of Poverty (2049-9957) | Springer (Biomed Central Ltd.) |
2016 - Current | Molecular and Biochemical Parasitology (0166-6851) | Elsevier |
2015 - Current | Biology Letters (1744-957X) | The Royal Society |
2013 - Current | Malaria Journal (1475-2875) | Springer (Biomed Central Ltd.) |
2012 - Current | Evolution | |
2011 - Current | Parasitology (1469-8161) | Cambridge University Press |
2011 - Current | Infection Genetics and Evolution (1567-1348) | Elsevier |
2010 - Current | Behavioral Ecology and Sociobiology (1432-0762) | Springer-Verlag |
2010 - Current | Ecological Entomology (1365-2311) | Wiley (Blackwell Publishing) |
2010 - Current | Parasitology International (1383-5769) | Elsevier |
2018 - 2018 | PLoS Biology (1545-7885) | Public Library of Science |
Other jury / evaluation
Activity description | Institution / Organization | |
---|---|---|
2020/06/01 - 2021/06/30 | Research Topic Invited Editor for Frontiers in Genetics and Frontiers in Microbiology. Topic title: Eco-evolutionary Processes within Microbial Communities |
Distinctions
Award
2011 | James Rennie Bequest Travel Grant
The University of Edinburgh, United Kingdom
|
2010 | British Society for Parasitology Travel Grant |
2010 | Silver Sponsorship
Primerdesign Ltd, United Kingdom
|