Identification
Personal identification
- Full name
- Francisca Manuel Gaspar Vieira
Citation names
- Francisca G. Vieira
Author identifiers
- Ciência ID
- 5612-F0EA-BE7E
- ORCID iD
- 0000-0002-9767-4356
- Google Scholar ID
- vOar1y4AAAAJ&hl
- Scopus Author Id
- 58246152500
Websites
- https://www.linkedin.com/in/francisca-gaspar-vieira/ (Social media)
Knowledge fields
- Exact Sciences - Computer and Information Sciences - Bioinformatics
- Exact Sciences - Mathematics - Statistics and Probability
Languages
Language | Speaking | Reading | Writing | Listening | Peer-review |
---|---|---|---|---|---|
Portuguese (Mother tongue) | |||||
English | Advanced (C1) | Advanced (C1) | Advanced (C1) | Advanced (C1) | Advanced (C1) |
French | Elementary (A2) | Elementary (A2) | Elementary (A2) | Elementary (A2) | Elementary (A2) |
German | Elementary (A2) | Elementary (A2) | Elementary (A2) | Elementary (A2) | Elementary (A2) |
Education
Degree | Classification | |
---|---|---|
2024/09 - 2027
Ongoing
|
Bioinformatics (Doktor (PhD))
Universität Heidelberg Centre for Organismal Studies, Germany
|
|
2021/09 - 2023/11/13
Concluded
|
Biologia Computacional e Bioinformática (Mestrado integrado)
Major in Biosystems Simulation for Life and Health Sciences
Universidade Nova de Lisboa, Portugal
"Unveiling Novel Glioma Biomarkers through Multi-omics Integration and Classification" (THESIS/DISSERTATION)
|
20 |
2016/09 - 2021/11
Concluded
|
Engenharia Biológica (Mestrado integrado)
Universidade de Lisboa Instituto Superior Técnico, Portugal
"Genomic Characterization of Three Novel Acidovorax Phage Genera and Their Potential in Phage Biocontrol
" (THESIS/DISSERTATION)
|
17 |
Affiliation
Science
Category Host institution |
Employer | |
---|---|---|
2024/09 - Current | Researcher (Research) | Universität Heidelberg Centre for Organismal Studies, Germany |
2023/08/01 - 2024/07/31 | Research Assistant (Research) | Universidade Nova de Lisboa Unidade de Investigação e Desenvolvimento em Engenharia Mecânica e Industrial, Portugal |
2022/07/15 - 2022/10/15 | Research Assistant (Research) | Universidade Nova Centro de Matemática e Aplicações, Portugal |
2020/03 - 2020/06 | Research Trainee (Research) | Universidade de Lisboa Computer and Robot Vision Laboratory, Portugal |
Others
Category Host institution |
Employer | |
---|---|---|
2023/06/01 - Current | Member of PerMediK Action | European Cooperation in Science and Technology, Belgium |
2023/01/01 - 2023/08/01 | Programming Teacher | Algorithmics Lisbon - Programming School, Portugal |
2022/10/01 - 2023/01/01 | Machine Learning Instructor | TreeTree2, Portugal |
Projects
Grant
Designation | Funders | |
---|---|---|
2023/08/01 - Current | OMICs approaches to reveal the anticancer properties of Virgin Olive Oil
Research Fellow
|
Fundação para a Ciência e a Tecnologia |
2022/07 - 2022/10 | ARTIFICIAL INTELLIGENCE ON THE MANAGEMENT OF THE DEGREE OF READINESS IN URBAN FIREFIGHTING
Research Fellow
Universidade Nova Centro de Matemática e Aplicações, Portugal
|
Fundação para a Ciência e a Tecnologia |
Contract
Designation | Funders | |
---|---|---|
2023/01 - 2024/02 | Multi-omic networks in gliomas
Researcher
|
Fundação para a Ciência e a Tecnologia |
Outputs
Publications
Journal article |
|
Preprint |
|
Thesis / Dissertation |
|
Other
Other output |
|
Activities
Oral presentation
Presentation title | Event name Host (Event location) |
|
---|---|---|
2023/10/12 | Classification and Survival Analysis of Multi-Omics Data for the Identification of Novel Diagnostic and Prognostic Biomarkers in Glioma | XXVI Congress of the Portuguese Statistical Society
Portuguese Statistical Society (Guimarães, Portugal)
|
2023/03/13 | Integration of Multi-omics Data for the Classification of Glioma Subtypes and Identification of Novel Biomarkers. | XII Edition of the Bioinformatics Open Days
University of Minho (Braga, Portugal)
|
Event organisation
Event name Type of event (Role) |
Institution / Organization | |
---|---|---|
2020 - 2021 | Organization of the program "CoLab Sessions": program of semiannual internships for higher education students. (2020 - 2021)
Workshop (Member of the Organising Committee)
|
IEEE-IST Engineering in Medicine and Biology Society, Portugal |
Event participation
Activity description Type of event |
Event name Institution / Organization |
|
---|---|---|
2024/10/07 - 2024/10/11 | Participation in Romberg Course by Dr. Tiangang Cui (University of Sydney): The overall aim of this course was to study matrix
computations that lie at the core of a wide variety of applications in machine learning and data science: Introduction to
the mathematical theory of computational linear algebra, including methods for solving linear systems of equations, least-squares
problems, eigenvalue problems, and other matrix decompositions.
Workshop
|
Romberg Course: Computational Linear Algebra for Machine Learning
Universität Heidelberg Graduate School of Mathematical and Computational Methods for the Sciences, Germany
|
2024/09/09 - 2024/09/11 | The HGS MathComp Annual Retreat features workshops to improve academic practice and chances for Fellows to present their current
research. Workshops attended: Effective Software Testing; Career Development, SAP Coding Interview.
Meeting
|
HGS MathComp Annual Retreat 2024
Universität Heidelberg Graduate School of Mathematical and Computational Methods for the Sciences, Germany
|
2024/02/06 - 2024/02/09 | Attendance of the international "OLISSIPO School on Mathematical modelling of inter-cell and communities interactions with
a focus on metabolism".
Lecturers: Prof. Jörg Stelling (ETH Zürich), Prof. Jürgen Zanghellini (University of Vienna), Prof. Kiran Patil (University
of Cambridge), Prof. Steffen Klamt (Max Planck Institute for Dynamics of Complex Technical Systems).
Workshop
|
OLISSIPO School on Mathematical modelling of inter-cell and communities interactions with a focus on metabolism
Instituto de Engenharia de Sistemas e Computadores Investigação e Desenvolvimento em Lisboa, Portugal
|
2023/10/11 - 2023/10/14 | Participation in the Workshop "Joint Models for Longitudinal and Survival Data" by Pedro Miranda Afonso (Erasmus Medical Center
Rotterdam): Introduction of joint analysis of longitudinal and survival data and practical examples using the R library JMbayes2.
Workshop
|
Joint Models for Longitudinal and Survival Data
Universidade do Minho, Portugal
Sociedade Portuguesa de Estatística, Portugal |
2023/09/14 - 2023/09/16 | Attendance of the international "Training School for Big Data collection, handling, Bioinformatics tools for Big data Analysis",
in Athens, Greece, with a fully funded grant/scholarship by COST (European Cooperation in Science and Technology).
Workshop
|
Training School for Big Data collection, handling, Bioinformatics tools for Big data Analysis |
2023/07/05 - 2023/07/13 | Participation in the workshop entitled "Bioinformatics tools for multi-omics analysis", by Sonia Tarazona (Universitat Politècnica
de València): Estimation of statistical power in multi-omics studies and generation of multi-omics regulatory networks for
gene expression.
Workshop
|
NOVAMATH Thematic Weeks 2023 - Mathematical Models in Health
Universidade Nova Centro de Matemática e Aplicações, Portugal
|
2023/05/11 - 2023/05/12 | Participation in the Workshop: "Single-Cell", by Donnacha Fitzgerald, Hosna Baniadam, Harald Vöhringer, Petr Smirnov (EMBL):
The aim of this workshop was to introduce single-cell (including multi-omic and spatial) methods, what can be achieved with
them and principles for their analysis.
Workshop
|
OLISSIPO Workshop - EMBL Training: Single-Cell
Instituto de Engenharia de Sistemas e Computadores Investigação e Desenvolvimento em Lisboa, Portugal
European Molecular Biology Laboratory, Germany |
2023/05/10 - 2023/05/10 | Participation in the Workshop: "Drug Synergy", by Petr Smirnov (EMBL): Introduced the fundamental concepts behind analysing
drug combination experiments on immortalised cancer cell lines; discussed common models for assessing drug synergy, and introduced
R/Bioconductor tools implementing these methods. A hands-on analysing public drug combination data was included.
Workshop
|
OLISSIPO Workshop - EMBL Training: Drug Synergy
Instituto de Engenharia de Sistemas e Computadores Investigação e Desenvolvimento em Lisboa, Portugal
European Molecular Biology Laboratory, Germany |
2023/04/27 - 2023/04/27 | Participation in the OLISSIPO Workshop: "Decoding the genome with deep learning", Bernardo Almeida (University of Vienna):
Training and interpretation of deep learning models to predict regulatory activities and gene expression from DNA sequences.
Workshop
|
OLISSIPO Workshop: Decoding the genome with deep learning
Instituto de Engenharia de Sistemas e Computadores Investigação e Desenvolvimento em Lisboa, Portugal
|
2023/03/18 - 2023/03/18 | Participation in the Workshop: "The Importance of Machine Learning in Structural Biology", by Irina Moreira, Catarina Marques-Pereira
and Luana Afonso (University of Coimbra): Training and evaluating different machine learning and deep learning models with
structural biology data.
Workshop
|
The Importance of Machine Learning in Structural Biology
Universidade do Minho, Portugal
|
2022/09/14 - 2022/09/14 | Attendance of the Workshop in Statistics for Health, Public Health and Surveillance Problems.
Conference
|
II Workshop in Statistics for Health, Public Health and Surveillance Problems
Universidade Nova Centro de Matemática e Aplicações, Portugal
|
Distinctions
Award
2024 | Academic Merit Scholarship for Higher Education Students
Universidade Nova de Lisboa, Portugal
|
2024 | Best Student Award in MSc. in Computational Biology and Bioinformatics 2022/2023
Universidade Nova de Lisboa Faculdade de Ciências e Tecnologia, Portugal
|
2024 | Best Science Student Award 2022/2023
Universidade Nova de Lisboa Faculdade de Ciências e Tecnologia, Portugal
|
2024 | Best Faculty Student Award 2022/2023
Universidade Nova de Lisboa Faculdade de Ciências e Tecnologia, Portugal
|
2023 | Congress Participation Grant
Sociedade Portuguesa de Estatística, Portugal
|
2022 | Huawei Merit Scholarship
Huawei Portugal, Portugal
|
2022 | IST Mention of Academic Excellence
Universidade de Lisboa Instituto Superior Técnico, Portugal
|
2021 | IST Mention of Academic Merit
Universidade de Lisboa Instituto Superior Técnico, Portugal
|
2019 | IST Mention of Academic Merit
Universidade de Lisboa Instituto Superior Técnico, Portugal
|
2019 | Best in Class BCG
Boston Consulting Group, United States
Universidade de Lisboa Instituto Superior Técnico, Portugal |
2019 | EDP-Best of Class
EDP, Portugal
|