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Lounas Chikhi completed his PhD in Population Genetics from Université de Paris VI (Pierre et Marie Curie) in 1995. He is Principal Investigator (PI) of the Population and Conservation Genetics group, at Instituto Gulbenkian de Ciência (IGC, Portugal), since 2005 and Directeur de Recherche (1st class) at the Evolution & Diversité Biologique lab (CNRS and Université de Toulouse 3, France) since 2002. L. Chikhi has published over 100 articles in international peer-reviewed journals and 19 book chapters, and is Editor for the Journal Heredity since 2016. He has organised, attended, and delivered presentations at several national and international conferences, workshops, and courses. He has supervised 40 students, one of which is a current PhD candidate at IGC. His current research interests include the population-level genetic consequences of events such as population collapses, expansions, and admixture, as well as changes in population structure and connectivity. L. Chikhi performs thus both theoretical work and applied research, for instance on populations of lemurs inhabiting increasingly fragmented forest mosaics in Madagascar.
Identification

Personal identification

Full name
Lounès Chikhi

Citation names

  • CHIKHI, Lounès

Author identifiers

Ciência ID
561D-E394-2580

Websites

Languages

Language Speaking Reading Writing Listening Peer-review
French (Mother tongue)
English Proficiency (C2) Proficiency (C2) Proficiency (C2) Proficiency (C2) Proficiency (C2)
Portuguese Proficiency (C2) Proficiency (C2) Proficiency (C2) Proficiency (C2) Proficiency (C2)
Italian Proficiency (C2) Proficiency (C2) Proficiency (C2) Proficiency (C2) Proficiency (C2)
Education
Degree Classification
1991 - 1995
Concluded
Population Genetics (Docteur)
Universite de Paris VI (Pierre et Marie Curie), France
"Genetic differentiation in Sardinella aurita and S. maderensis, allozymes and mitochondrial DNA" (THESIS/DISSERTATION)
1990 - 1991
Concluded
Population Biology and Eco-ethology (DEA)
Université de Tours, France
1988 - 1991
Concluded
Diplôme d'Ingénieur de l'Institut National Agronomique Paris-Gignon (Diplôme d´études supérieures)
AgroParisTech, France
Affiliation

Science

Category
Host institution
Employer
2005 - Current Principal Investigator (Research) Instituto Gulbenkian de Ciência, Portugal
2002 - Current Coordinating Researcher (Research) Centre National de la Recherche Scientifique, France
2001 - 2002 Postdoc (Research) University College London Division of Biosciences, United Kingdom
University College London Division of Biosciences, United Kingdom
2001/01 - 2001/03 Researcher (Research) Cardiff University, United Kingdom
Cardiff University, United Kingdom
1999 - 2000 Postdoc (Research) Queen Mary University of London, United Kingdom
Queen Mary University of London, United Kingdom
1997 - 1999 Postdoc (Research) Institute of Zoology of the Zoological Society of London, United Kingdom
Institute of Zoology of the Zoological Society of London, United Kingdom
1996 - 1997 Researcher (Research) Università degli Studi di Padova, Italy
Università degli Studi di Padova, Italy
Projects

Grant

Designation Funders
2018/10/01 - Current Demographic Inference in Structured Populations - DISPO
Principal investigator
Instituto Gulbenkian de Ciência, Portugal
Fundação para a Ciência e a Tecnologia
Ongoing
2017/01/01 - 2020/05/31 INFRAGECO (Inference, Fragmentation, Genomics and Conservation) - ERA-NET Biodiversa2005
Principal investigator
Instituto Gulbenkian de Ciência, Portugal

Stiftung Tierärztliche Hochschule Hannover, Germany

Evolution et Diversité Biologique, France

Institut de Mathématiques de Toulouse, France
Ongoing
2013/05/01 - 2016/02/29 Perda e fragmentação de habitat ao longo do tempo e do espaço do ponto de vista de vertebrados em Madagáscar
PTDC/BIA-BIC/4476/2012
Principal investigator
Concluded
2010/03/01 - 2013/05/31 Efeitos genéticos da perda e fragmentação do habitat: análise comparativa de várias espécies de lémures em duas regiões adjacentes de Madgáscar.
PTDC/BIA-BEC/100176/2008
Principal investigator
Concluded
2008/01/02 - 2011/12/31 Respostas demográficas e genéticas à fragmentação e perda de habitat em dois grandes mamíferos florestais
PTDC/BIA-BDE/71299/2006
Principal investigator
Concluded
2008/01/01 - 2010/12/31 conservation, phylogéographie et génétique de lémuriens des habitats fragmentés de madagascar et de l'archiipel des comores
CD-AOOI07003
Principal investigator
Evolution et Diversité Biologique, France
Agence Française pour la Biodiversité
Concluded

Contract

Designation Funders
2023/03/01 - 2026/02/28 The variation of Iberian sheep under domestication: an archaeogenetics study
2022.04843.PTDC
Universidade de Lisboa Centro de Investigação Interdisciplinar em Sanidade Animal, Portugal

Centro de Biotecnologia Agrícola e Agro-Alimentar do Alentejo, Portugal

Universidade de Lisboa Centro de Arqueologia, Portugal

Instituto Nacional de Investigação Agrária e Veterinária, Portugal
Fundação para a Ciência e a Tecnologia
Ongoing
2023/03/01 - 2026/02/28 The variation of Iberian sheep under domestication: an archaeogenetics study
2022.04843.PTDC
Universidade de Lisboa Centro de Investigação Interdisciplinar em Sanidade Animal, Portugal

Centro de Biotecnologia Agrícola e Agro-Alimentar do Alentejo, Portugal

Universidade de Lisboa Centro de Arqueologia, Portugal

Instituto Nacional de Investigação Agrária e Veterinária, Portugal
Fundação para a Ciência e a Tecnologia
Ongoing
2023/03/01 - 2026/02/28 The variation of Iberian sheep under domestication: an archaeogenetics study
2022.04843.PTDC
Universidade de Lisboa Centro de Investigação Interdisciplinar em Sanidade Animal, Portugal

Centro de Biotecnologia Agrícola e Agro-Alimentar do Alentejo, Portugal

Universidade de Lisboa Centro de Arqueologia, Portugal

Instituto Nacional de Investigação Agrária e Veterinária, Portugal
Fundação para a Ciência e a Tecnologia
Ongoing
2021/01/01 - 2025/12/31 Life Sciences for a Healthy and Sustainable Future
LA/P/0087/2020
Universidade Nova de Lisboa, Portugal

Universidade Nova de Lisboa Microbiologia Molecular Estrutural e Celular, Portugal

Universidade de Trás-os-Montes e Alto Douro Centro de Investigação e de Tecnologias Agro-Ambientais e Biologicas, Portugal

Instituto de Biologia Experimental e Tecnológica, Portugal

Instituto Gulbenkian de Ciência, Portugal

Instituto Português de Oncologia de Lisboa Francisco Gentil EPE, Portugal

Universidade de Lisboa Centro de Estudos Comparatistas, Portugal

BioResources 4 Sustainability, Portugal
Fundação para a Ciência e a Tecnologia
Ongoing
2021/01/01 - 2025/12/31 Life Sciences for a Healthy and Sustainable Future
LA/P/0087/2020
Universidade Nova de Lisboa, Portugal

Universidade Nova de Lisboa Microbiologia Molecular Estrutural e Celular, Portugal

Universidade de Trás-os-Montes e Alto Douro Centro de Investigação e de Tecnologias Agro-Ambientais e Biologicas, Portugal

Instituto de Biologia Experimental e Tecnológica, Portugal

Instituto Gulbenkian de Ciência, Portugal

Instituto Português de Oncologia de Lisboa Francisco Gentil EPE, Portugal

Universidade de Lisboa Centro de Estudos Comparatistas, Portugal

BioResources 4 Sustainability, Portugal
Fundação para a Ciência e a Tecnologia
Ongoing
2021/01/01 - 2025/12/31 Life Sciences for a Healthy and Sustainable Future
LA/P/0087/2020
Universidade Nova de Lisboa, Portugal

Universidade Nova de Lisboa Microbiologia Molecular Estrutural e Celular, Portugal

Universidade de Trás-os-Montes e Alto Douro Centro de Investigação e de Tecnologias Agro-Ambientais e Biologicas, Portugal

Instituto de Biologia Experimental e Tecnológica, Portugal

Instituto Gulbenkian de Ciência, Portugal

Instituto Português de Oncologia de Lisboa Francisco Gentil EPE, Portugal

Universidade de Lisboa Centro de Estudos Comparatistas, Portugal

BioResources 4 Sustainability, Portugal
Fundação para a Ciência e a Tecnologia
Ongoing
2018/10/01 - 2022/06/30 Demographic Inference in Structured Populations
PTDC/BIA-EVL/30815/2017
Universidade de Trás-os-Montes e Alto Douro Centro de Investigação e de Tecnologias Agro-Ambientais e Biologicas, Portugal
Fundação para a Ciência e a Tecnologia
Concluded
2018/10/01 - 2022/06/30 Demographic Inference in Structured Populations
PTDC/BIA-EVL/30815/2017
Universidade de Trás-os-Montes e Alto Douro Centro de Investigação e de Tecnologias Agro-Ambientais e Biologicas, Portugal
Fundação para a Ciência e a Tecnologia
Concluded
2018/10/01 - 2022/06/30 Demographic Inference in Structured Populations
PTDC/BIA-EVL/30815/2017
Universidade de Trás-os-Montes e Alto Douro Centro de Investigação e de Tecnologias Agro-Ambientais e Biologicas, Portugal
Fundação para a Ciência e a Tecnologia
Concluded
2017/01/01 - 2020/11/30 Inference, fragmentation, genomics and conservation
BIODIVERSA/0003/2015
Universidade de Trás-os-Montes e Alto Douro Centro de Investigação e de Tecnologias Agro-Ambientais e Biologicas, Portugal

Instituto Gulbenkian de Ciência, Portugal
Fundação para a Ciência e a Tecnologia
Concluded
2017/01/01 - 2020/11/30 Inference, fragmentation, genomics and conservation
BIODIVERSA/0003/2015
Universidade de Trás-os-Montes e Alto Douro Centro de Investigação e de Tecnologias Agro-Ambientais e Biologicas, Portugal

Instituto Gulbenkian de Ciência, Portugal
Fundação para a Ciência e a Tecnologia
Concluded
2017/01/01 - 2020/11/30 Inference, fragmentation, genomics and conservation
BIODIVERSA/0003/2015
Universidade de Trás-os-Montes e Alto Douro Centro de Investigação e de Tecnologias Agro-Ambientais e Biologicas, Portugal

Instituto Gulbenkian de Ciência, Portugal
Fundação para a Ciência e a Tecnologia
Concluded
2019/01/01 - 2019/12/31 Instituto Gulbenkian de Ciência
UID/Multi/04555/2019
Universidade de Trás-os-Montes e Alto Douro Centro de Investigação e de Tecnologias Agro-Ambientais e Biologicas, Portugal

Instituto Gulbenkian de Ciência, Portugal
Fundação para a Ciência e a Tecnologia
Concluded
2019/01/01 - 2019/12/31 Instituto Gulbenkian de Ciência
UID/Multi/04555/2019
Universidade de Trás-os-Montes e Alto Douro Centro de Investigação e de Tecnologias Agro-Ambientais e Biologicas, Portugal

Instituto Gulbenkian de Ciência, Portugal
Fundação para a Ciência e a Tecnologia
Concluded
2019/01/01 - 2019/12/31 Instituto Gulbenkian de Ciência
UID/Multi/04555/2019
Universidade de Trás-os-Montes e Alto Douro Centro de Investigação e de Tecnologias Agro-Ambientais e Biologicas, Portugal

Instituto Gulbenkian de Ciência, Portugal
Fundação para a Ciência e a Tecnologia
Concluded
2016/06/01 - 2019/11/30 Comparative landscape evolutionary genomics of West-African primates: a contribution of the anthropological biology to their conservation plan
PTDC/IVC-ANT/3058/2014
Universidade de Trás-os-Montes e Alto Douro Centro de Investigação e de Tecnologias Agro-Ambientais e Biologicas, Portugal

Instituto Gulbenkian de Ciência, Portugal

Universidade de Lisboa Instituto Superior de Ciências Sociais e Políticas, Portugal

Universidade do Porto Instituto de Ciências Tecnologias e Agroambiente, Portugal
Fundação para a Ciência e a Tecnologia
Concluded
2016/06/01 - 2019/11/30 Comparative landscape evolutionary genomics of West-African primates: a contribution of the anthropological biology to their conservation plan
PTDC/IVC-ANT/3058/2014
Universidade de Trás-os-Montes e Alto Douro Centro de Investigação e de Tecnologias Agro-Ambientais e Biologicas, Portugal

Instituto Gulbenkian de Ciência, Portugal

Universidade de Lisboa Instituto Superior de Ciências Sociais e Políticas, Portugal

Universidade do Porto Instituto de Ciências Tecnologias e Agroambiente, Portugal
Fundação para a Ciência e a Tecnologia
Concluded
2016/06/01 - 2019/11/30 Comparative landscape evolutionary genomics of West-African primates: a contribution of the anthropological biology to their conservation plan
PTDC/IVC-ANT/3058/2014
Universidade de Trás-os-Montes e Alto Douro Centro de Investigação e de Tecnologias Agro-Ambientais e Biologicas, Portugal

Instituto Gulbenkian de Ciência, Portugal

Universidade de Lisboa Instituto Superior de Ciências Sociais e Políticas, Portugal

Universidade do Porto Instituto de Ciências Tecnologias e Agroambiente, Portugal
Fundação para a Ciência e a Tecnologia
Concluded
2013/05/01 - 2016/02/29 A vertebrate's eye view on habitat loss and fragmentation across time and space in Madagascar
PTDC/BIA-BIC/4476/2012
Fundação Calouste Gulbenkian, Portugal

Evolution et diversité biologique, France

Instituto Gulbenkian de Ciência, Portugal
Fundação para a Ciência e a Tecnologia
Concluded
2013/05/01 - 2016/02/29 A vertebrate's eye view on habitat loss and fragmentation across time and space in Madagascar
PTDC/BIA-BIC/4476/2012
Fundação Calouste Gulbenkian, Portugal

Evolution et diversité biologique, France

Instituto Gulbenkian de Ciência, Portugal
Fundação para a Ciência e a Tecnologia
Concluded
2013/05/01 - 2016/02/29 A vertebrate's eye view on habitat loss and fragmentation across time and space in Madagascar
PTDC/BIA-BIC/4476/2012
Fundação Calouste Gulbenkian, Portugal

Evolution et diversité biologique, France

Instituto Gulbenkian de Ciência, Portugal
Fundação para a Ciência e a Tecnologia
Concluded
2010/02/01 - 2013/07/31 Tracing back animal domestication in Iberia: Clues from zooarchaeology and DNA analysis
PTDC/HIS-ARQ/100225/2008
Fundação da Faculdade de Ciências da Universidade de Lisboa, Portugal

Uppsala Universitet, Sweden

University of California Davis, United States

Universidade de Trás-os-Montes e Alto Douro Centro de Investigação e de Tecnologias Agro-Ambientais e Biologicas, Portugal

Instituto Gestao do Patrimonio Arquitectonico e Aqueologico, Portugal

Max-Planck-Institut fur Dynamik komplexer technischer Systeme, Germany

Instituto Nacional de Investigação Agrária e Veterinária, Portugal
Fundação para a Ciência e a Tecnologia
Concluded
2010/02/01 - 2013/07/31 Tracing back animal domestication in Iberia: Clues from zooarchaeology and DNA analysis
PTDC/HIS-ARQ/100225/2008
Fundação da Faculdade de Ciências da Universidade de Lisboa, Portugal

Uppsala Universitet, Sweden

University of California Davis, United States

Universidade de Trás-os-Montes e Alto Douro Centro de Investigação e de Tecnologias Agro-Ambientais e Biologicas, Portugal

Instituto Gestao do Patrimonio Arquitectonico e Aqueologico, Portugal

Max-Planck-Institut fur Dynamik komplexer technischer Systeme, Germany

Instituto Nacional de Investigação Agrária e Veterinária, Portugal
Fundação para a Ciência e a Tecnologia
Concluded
2010/02/01 - 2013/07/31 Tracing back animal domestication in Iberia: Clues from zooarchaeology and DNA analysis
PTDC/HIS-ARQ/100225/2008
Fundação da Faculdade de Ciências da Universidade de Lisboa, Portugal

Uppsala Universitet, Sweden

University of California Davis, United States

Universidade de Trás-os-Montes e Alto Douro Centro de Investigação e de Tecnologias Agro-Ambientais e Biologicas, Portugal

Instituto Gestao do Patrimonio Arquitectonico e Aqueologico, Portugal

Max-Planck-Institut fur Dynamik komplexer technischer Systeme, Germany

Instituto Nacional de Investigação Agrária e Veterinária, Portugal
Fundação para a Ciência e a Tecnologia
Concluded
2010/03/01 - 2013/05/31 Genetic effects of habitat loss and fragmentation: comparative analysis of several lemur species in two neighbouring regions of Madagascar.
PTDC/BIA-BEC/100176/2008
Universidade de Trás-os-Montes e Alto Douro Centro de Investigação e de Tecnologias Agro-Ambientais e Biologicas, Portugal

Evolution et diversité biologique, France

Instituto Gulbenkian de Ciência, Portugal

University of Reading, United Kingdom
Fundação para a Ciência e a Tecnologia
Concluded
2010/03/01 - 2013/05/31 Genetic effects of habitat loss and fragmentation: comparative analysis of several lemur species in two neighbouring regions of Madagascar.
PTDC/BIA-BEC/100176/2008
Universidade de Trás-os-Montes e Alto Douro Centro de Investigação e de Tecnologias Agro-Ambientais e Biologicas, Portugal

Evolution et diversité biologique, France

Instituto Gulbenkian de Ciência, Portugal

University of Reading, United Kingdom
Fundação para a Ciência e a Tecnologia
Concluded
2010/03/01 - 2013/05/31 Genetic effects of habitat loss and fragmentation: comparative analysis of several lemur species in two neighbouring regions of Madagascar.
PTDC/BIA-BEC/100176/2008
Universidade de Trás-os-Montes e Alto Douro Centro de Investigação e de Tecnologias Agro-Ambientais e Biologicas, Portugal

Evolution et diversité biologique, France

Instituto Gulbenkian de Ciência, Portugal

University of Reading, United Kingdom
Fundação para a Ciência e a Tecnologia
Concluded
2010/02/01 - 2013/01/31 Exploring pathogen diversity in disease epidemiology and vaccine research
PTDC/BIA-BEC/103484/2008
Fundação Calouste Gulbenkian, Portugal

Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica António Xavier, Portugal

Fundação Oswaldo Cruz, Brazil

Instituto Gulbenkian de Ciência, Portugal
Fundação para a Ciência e a Tecnologia
Concluded
2010/02/01 - 2013/01/31 Exploring pathogen diversity in disease epidemiology and vaccine research
PTDC/BIA-BEC/103484/2008
Fundação Calouste Gulbenkian, Portugal

Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica António Xavier, Portugal

Fundação Oswaldo Cruz, Brazil

Instituto Gulbenkian de Ciência, Portugal
Fundação para a Ciência e a Tecnologia
Concluded
2010/02/01 - 2013/01/31 Exploring pathogen diversity in disease epidemiology and vaccine research
PTDC/BIA-BEC/103484/2008
Fundação Calouste Gulbenkian, Portugal

Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica António Xavier, Portugal

Fundação Oswaldo Cruz, Brazil

Instituto Gulbenkian de Ciência, Portugal
Fundação para a Ciência e a Tecnologia
Concluded
2008/01/02 - 2011/12/31 Demographic and genetic responses to habitat fragmentation and habitat loss in large forest mammals
PTDC/BIA-BDE/71299/2006
Fundação Calouste Gulbenkian, Portugal

Instituto Gulbenkian de Ciência, Portugal

Evolution et diversité biologique, France
Fundação para a Ciência e a Tecnologia
Concluded
2008/01/02 - 2011/12/31 Demographic and genetic responses to habitat fragmentation and habitat loss in large forest mammals
PTDC/BIA-BDE/71299/2006
Fundação Calouste Gulbenkian, Portugal

Instituto Gulbenkian de Ciência, Portugal

Evolution et diversité biologique, France
Fundação para a Ciência e a Tecnologia
Concluded
2008/01/02 - 2011/12/31 Demographic and genetic responses to habitat fragmentation and habitat loss in large forest mammals
PTDC/BIA-BDE/71299/2006
Fundação Calouste Gulbenkian, Portugal

Instituto Gulbenkian de Ciência, Portugal

Evolution et diversité biologique, France
Fundação para a Ciência e a Tecnologia
Concluded
Outputs

Publications

Book chapter
  1. Salgado-Lynn, Milena; Jalil, Mohammad Fairus B.; CHIKHI, Lounès ; Ancrenaz, Marc; Ambu, Laurentius N.; Bruford, Michael W.; Goossens, Benoît. "Landscape Genetics Applied to the Conservation of Primates in Flooded Forests: A Case Study of Orangutans in the Lower Kinabatangan Wildlife Sanctuary". In Primates in Flooded Habitats, edited by Nowak, K.; Barnett; Matsuda, I., 297-303. Cambridge, United Kingdom: Cambridge University Press, 2019.
    10.1017/9781316466780.039
  2. Banks, M.A.; Patel, E.R.; CHIKHI, Lounès ; Salmona, J.. "Perrier’s Sifaka Propithecus perrieri Lavauden, 1931: Madagascar (2000, 2002, 2004, 2014, 2016)". In Primates in peril : the world's 25 most endangered primates, 2016-2018, edited by Schwitzer, C.; Mittermeier, R.A.; Rylands, A.B.; Chiozza, F.; Williamson, E.A.; Macfie, E.J.; Wallis, J.; Cotton, A.. IUCN SSC Primate Specialist Group (PSG), International Primatological Society (IPS), Conservation International (CI), Bristol Zoological Society (BZS), 2017.
    Published
  3. Lynn, Milena Salgado; Sechi, Pierfrancesco; CHIKHI, Lounès ; Goossens, Benoit. "Primate conservation genetics at the dawn of conservation genomics". In An Introduction to Primate Conservation, 53-78. Oxford University Press, 2016.
    10.1093/acprof:oso/9780198703389.003.0005
  4. Banks, M.A.; Patel, E.R.; CHIKHI, Lounès ; Salmona, Jordi. "Perrier’s Sifaka Propithecus perrieri Lavauden, 1931: Madagascar (2000, 2002, 2004, 2014, 2016)". In Primates in peril : the world's 25 most endangered primates, 2014-2016, edited by Schwitzer, C.; Mittermeier, R.A.; Rylands, A.B.; Chiozza, F.; Williamson, E.A.; Wallis, J.; Cotton, A., 38-41. UCN SSC Primate Specialist Group (PSG), International Primatological Society (IPS), Conservation International (CI), Bristol Zoological Society (BZS), 2015.
    Published
  5. Arenas, M.; Mona, S.; Trochet, A.; Hanulova, A.S.; Ray, N.; CHIKHI, Lounès ; Rasteiro, R.; Schmeller, D.S.; Excoffier, L.. "The scaling of genetic diversity in a changing and fragmented world". In Scaling in Ecology and Biodiversity Conservation, edited by Henle, K.; Potts, S.; Kunin, W.; Matsinos, Y.G.; Simila, J.; Pantis, J.; Grobelnik,; Penev, L.; Settele, J.. 2014.
    Published
  6. Thomas, M.G.; Kivisild, T.; CHIKHI, Lounès ; Burger, J.. "Europe and Western Asia: genetics and population history". In The Encyclopedia of Global Human Migration, edited by Ness, I.; Bellwood, P., 146-156. Wiley-Blackwell, 2013.
    Published
  7. Rakotoarisoa, G.; Radespiel, U.; CHIKHI, Lounès. "Anjiamangirana and Marosely". In Lemurs of Madagascar: A Strategy for their Conservation 2013-2016, edited by Schwitzer, C.; Mittermeier, R.A.; Davies, N.; Johnson, S.; Ratsimbazafy, J.; Razfindramanana, J.; Louis Jr., E.E.; Rajaobelina, S.. IUCN SSC Primate Specialist Group; Bristol Conservation and Science Foundation; Conservation International, 2013.
    Published
  8. CHIKHI, Lounès; Goossens, B.; Jalil, M. F.; James, S. S.; Lackman-Ancrenaz, I.; Bruford, M.W.; Chikhi, L.; et al. "Taxonomy, geographic variation and population genetics of the Bornean and Sumatran orangutans". In Orangutans: geographic variation in behavioural ecology and conservation, 1-14. Reino Unido, United Kingdom: Oxford University Press, 2009.
    Published • 10.1093/acprof:oso/9780199213276.003.0001
  9. CHIKHI, Lounès; Barbujani, G.; Chikhi, L.. "Human genetic diversity and its history". In Handbook of Statistical Genetics, 0-0. Reino Unido, United Kingdom: Wiley, 2007.
    Published • 10.1002/9780470061619.ch31
  10. Wheeler, J.C.; CHIKHI, Lounès ; Bruford, M.W.. "Genetic analysis of the origins of domestic South American camelids". In Documenting domestication: new genetic and archaeological paradigms, edited by Zeder, M.A.; Bradley, D.; Emshwiller, E.; Smith, B.D., 329-334. University California Press, 2006.
    Published
  11. Garnier-Géré, P.; CHIKHI, Lounès. "Genetics of large populations and association studies". In Encyclopedia of the Human Genome. 2006.
    Published
  12. CHIKHI, Lounès; Wheeler, J.; Bruford, M.W.. "Case study in genetics of animal domestication: South American camelids". In Documenting Domestication: New Genetic and Archaeological Paradigms, 329-334. Califórnia, United States: University of California Press, 2005.
    Published
  13. CHIKHI, Lounès; Bruford, M.W.; Chikhi, L.; Bruford, M. W.; Bruford, M.. "Mammalian population genetics and genomics". In Mammalian population genetics and genomics, 539-583. Reino Unido, United Kingdom: CABI Publishers, 2005.
    Published
  14. CHIKHI, Lounès; Beaumont, M.A.. "Modelling Human Genetic History". In Encyclopaedia of Genetics, Genomics, Proteomics & Bioinformatics, 0-0. Reino Unido, United Kingdom: Wiley, 2005.
    Published
  15. CHIKHI, Lounès; Cierco-Ayrolles, C.; Abdallah, J.; Boitard, S.; Tsitrone, A.; Veyrieras, J.-B.; Mangin, B.; de Rochambeau, H.. "On linkage disequilibrium measures: methods and aplications studies". In Research Signpost. Recent Research Developments in Genetics and Breeding, 151-180. xxxx, United Kingdom: xxxx, 2004.
    Published
  16. CHIKHI, Lounès; Garnier-Géré, P.. "Genetics of large populations and association studies". In Encyclopedia of the Human Genome. Londres, United Kingdom: Nature Publishing Group, 2003.
    Published • 10.1002/9780470015902.a0005446.pub2
  17. CHIKHI, Lounès; Barbujani, G.. "Estimating the contribution of Palaeolithic and Neolithic groups to the European gene pool.". In Genes, Fossils and behaviour: an integrated approach to human evolution, 189-204. United Kingdom, United Kingdom: IOS Press, 2001.
    Published
  18. CHIKHI, Lounès; Barbujani, G.. "Genetic population structure of Europeans, inferred from nuclear and mitochondrial AND polymorphism.". In Genetic population structure of Europeans, inferred from nuclear and mitochondrial DNA polymorphisms, 119-129. Londres, United Kingdom: Oxford, 2000.
    Published
  19. CHIKHI, Lounès; Bonhomme, F.; Agnese, J. F.. "The search for genetic differentiation of two sardine species (Sardinella aurita and S. maderensis)". In Dynamics and use of sardinella resources from upwelling off Ghana and Ivory Coast, 152-168. França, France: l`ORSTOM, 1994.
    Published
Conference paper
  1. CHIKHI, Lounès. "Admixture in Europe Y chromosome data support the Demic Diffusion model". 2002.
    Published
Journal article
  1. Balboa, Renzo F.; Bertola, Laura D.; Brüniche-Olsen, A.; Rasmussen, Malthe Sebro; Liu, Xiaodong; Besnard, Guillaume; Salmona, Jordi; et al. "African bushpigs exhibit porous species boundaries and appeared in Madagascar concurrently with human arrival". Nature Communications 15 1 (2024): https://doi.org/10.1038/s41467-023-44105-1.
    Open access • Published • 10.1038/s41467-023-44105-1
  2. Sgarlata, Gabriele Maria; Rasolondraibe, Emmanuel; Salmona, Jordi; Le Pors, Barbara; Ralantoharijaona, Tantely; Rakotonanahary, Ando; Jan, Fabien; et al. "The genomic diversity of the Eliurus genus in northern Madagascar with a putative new species". Molecular Phylogenetics and Evolution 193 (2023): https://doi.org/10.1016/j.ympev.2023.107997.
    Open access • Published • 10.1016/j.ympev.2023.107997
  3. Ramsay, M.S.; Sgarlata, G.M.; Barratt, C.D.; Salmona, J.; Andriatsitohaina, B.; Kiene, F.; Manzi, S.; et al. "Effects of Forest Fragmentation on Connectivity and Genetic Diversity in an Endemic and an Invasive Rodent in Northwestern Madagascar". Genes 14 7 (2023): https://doi.org/10.3390/genes14071451.
    Published • 10.3390/genes14071451
  4. Minhós, T; Borges, F; Parreira, B; Oliveira, R; Aleixo-Pais, I; Calvignac, S; Leendertz, F; et al. "The importance of well protected forests for the conservation genetics of West African colobine monkeys". American Journal of Primatology 85 1 (2023):
    Open access • Published • 10.1002/ajp.23453
  5. Tiley, G. P.; van Elst, T.; Teixeira, H.; Schüßler, D.; Salmona, J.; Blanco, M.B.; Ralison, J.M.; et al. "Population genomic structure in Goodman's mouse lemur reveals long-standing separation of Madagascar's Central Highlands and eastern rainforests". Molecular Ecology 31 19 (2022): 4901-4918. https://doi.org/10.1111/mec.16632.
    Published • 10.1111/mec.16632
  6. Armando Arredondo; Beatriz Mourato; Khoa Nguyen; Simon Boitard; Willy Rodríguez; Olivier Mazet; Lounès Chikhi. "Correction: Inferring number of populations and changes in connectivity under the n-island model". Heredity (2022): https://doi.org/10.1038/s41437-022-00511-7.
    10.1038/s41437-022-00511-7
  7. Boitard, Simon; Arredondo, Armando; Chikhi, Lounès; Mazet, Olivier. "Heterogeneity in effective size across the genome: effects on the inverse instantaneous coalescence rate (IICR) and implications for demographic inference under linked selection". Genetics 220 3 (2022): http://dx.doi.org/10.1093/genetics/iyac008.
    10.1093/genetics/iyac008
  8. Teixeira, Helena; Salmona, Jordi; Arredondo, Armando; Mourato, Beatriz; Manzi, Sophie; Rakotondravony, Romule; Mazet, Olivier; et al. "Impact of model assumptions on demographic inferences: the case study of two sympatric mouse lemurs in northwestern Madagascar". BMC Ecology and Evolution 21 1 (2021): http://dx.doi.org/10.1186/s12862-021-01929-z.
    10.1186/s12862-021-01929-z
  9. CHIKHI, Lounès ; Barbujani, Guido. "Luca Cavalli-Sforza, 100 years after his birth". Human Population Genetics and Genomics 1 1 (2021): 1-4. https://doi.org/10.47248/hpgg2101010001.
    Open access • Published • 10.47248/hpgg2101010001
  10. Teixeira, Helena; Montade, Vincent; Salmona, Jordi; Metzger, Julia; Bremond, Laurent; Kasper, Thomas; Daut, Gerhard; et al. "Past environmental changes affected lemur population dynamics prior to human impact in Madagascar". Communications Biology 4 1 (2021): http://dx.doi.org/10.1038/s42003-021-02620-1.
    10.1038/s42003-021-02620-1
  11. Schlebusch, Carina M.; Loog, Liisa; Groucutt, Huw S.; King, Turi; Rutherford, Adam; Barbieri, Chiara; Barbujani, Guido; et al. "Human origins in Southern African palaeo-wetlands? Strong claims from weak evidence". Journal of Archaeological Science 130 (2021): 105374. http://dx.doi.org/10.1016/j.jas.2021.105374.
    10.1016/j.jas.2021.105374
  12. Armando Arredondo; Beatriz Mourato; Khoa Nguyen; Simon Boitard; Willy Rodríguez; Olivier Mazet; Lounès Chikhi. "Inferring number of populations and changes in connectivity under the n-island model". Heredity 126 6 (2021): 896-912. https://doi.org/10.1038/s41437-021-00426-9.
    10.1038/s41437-021-00426-9
  13. Rasmus Heller; Casia Nursyifa; Genís Garcia-Erill; Jordi Salmona; Lounes Chikhi; Jonas Meisner; Thorfinn Sand Korneliussen; Anders Albrechtsen. "A reference-free approach to analyse RADseq data using standard next generation sequencing toolkits". Molecular Ecology Resources (2021): https://doi.org/10.1111/1755-0998.13324.
    10.1111/1755-0998.13324
  14. Parreira, Bárbara; Quéméré, Erwan; Vanpé, Cécile; Carvalho, Inês; Chikhi, Lounès. "Genetic consequences of social structure in the golden-crowned sifaka". Heredity 125 5 (2020): 328-339. http://dx.doi.org/10.1038/s41437-020-0345-5.
    Published • 10.1038/s41437-020-0345-5
  15. Schüßler, Dominik; Blanco, Marina B.; Salmona, Jordi; Poelstra, Jelmer; Andriambeloson, Jean B.; Miller, Alex; Randrianambinina, Blanchard; et al. "Ecology and morphology of mouse lemurs ( Microcebus spp.) in a hotspot of microendemism in northeastern Madagascar, with the description of a new species". American Journal of Primatology 82 9 (2020): http://dx.doi.org/10.1002/ajp.23180.
    Published • 10.1002/ajp.23180
  16. Poelstra, Jelmer W; Salmona, Jordi; Tiley, George P; Schüßler, Dominik; Blanco, Marina B; Andriambeloson, Jean B; Bouchez, Olivier; et al. "Cryptic Patterns of Speciation in Cryptic Primates: Microendemic Mouse Lemurs and the Multispecies Coalescent". Systematic Biology (2020): http://dx.doi.org/10.1093/sysbio/syaa053.
    Published • 10.1093/sysbio/syaa053
  17. Hending, Daniel; Sgarlata, Gabriele M; Le Pors, Barbara; Rasolondraibe, Emmanuel; Jan, Fabien; Rakotonanahary, Ando N; Ralantoharijaona, Tantely N; et al. "Distribution and conservation status of the endangered Montagne d’Ambre fork-marked lemur (Phaner electromontis)". Journal of Mammalogy 101 4 (2020): 1049-1060. http://dx.doi.org/10.1093/jmammal/gyaa065.
    Published • 10.1093/jmammal/gyaa065
  18. Le Pors, Barbara; Sgarlata, Gabriele Maria; Salmona, Jordi; Rasolondraibe, Emmanuel; Ralantoharijaona, Tantely; Randriamaroson, Jacquis; Rasoloharijaona, Solofonirina; Andriaholinirina, Nicole Volasoa; CHIKHI, Lounès. "Lemur inventory of the Analabe forest, SAVA region, and observation of an albino Eulemur". Lemur News 22 (2020): 56-63.
    Published
  19. Sgarlata, Gabriele Maria; Salmona, Jordi; Le Pors, Barbara; Rasolondraibe, Emmanuel; Jan, Fabien; Ralantoharijaona, Tantely; Rakotonanahary, Ando; et al. "Genetic and morphological diversity of mouse lemurs ( Microcebus spp.) in northern Madagascar: The discovery of a putative new species?". American Journal of Primatology 81 12 (2019): http://dx.doi.org/10.1002/ajp.23070.
    Published • 10.1002/ajp.23070
  20. Scerri, Eleanor M. L.; Chikhi, Lounès; Thomas, Mark G.. "Beyond multiregional and simple out-of-Africa models of human evolution". Nature Ecology & Evolution 3 10 (2019): 1370-1372. http://dx.doi.org/10.1038/s41559-019-0992-1.
    10.1038/s41559-019-0992-1
  21. da Fonseca, Rute R.; Ureña, Irene; Afonso, Sandra; Pires, Ana Elisabete; Jørsboe, Emil; Chikhi, Lounès; Ginja, Catarina. "Consequences of breed formation on patterns of genomic diversity and differentiation: the case of highly diverse peripheral Iberian cattle". BMC Genomics 20 1 (2019): http://dx.doi.org/10.1186/s12864-019-5685-2.
    10.1186/s12864-019-5685-2
  22. Pires, Ana Elisabete; Detry, Cleia; CHIKHI, Lounès ; Rasteiro, Rita; Amorim, Isabel R.; Simões, Fernanda; Matos, José; et al. "The curious case of the Mesolithic Iberian dogs: An archaeogenetic study". Journal of Archaeological Science 105 (2019): 116-129.
    Published
  23. Aleixo-Pais, Isa; Salmona, Jordi; Sgarlata, Gabriele Maria; Rakotonanahary, Ando; Sousa, Ana Priscilla; Parreira, Bárbara; Kun-Rodrigues, Célia; et al. "The genetic structure of a mouse lemur living in a fragmented habitat in Northern Madagascar". Conservation Genetics 20 2 (2018): 229-243. http://dx.doi.org/10.1007/s10592-018-1126-z.
    10.1007/s10592-018-1126-z
  24. Scerri, Eleanor M.L.; Thomas, Mark G.; Manica, Andrea; Gunz, Philipp; Stock, Jay T.; Stringer, Chris; Grove, Matt; et al. "Did Our Species Evolve in Subdivided Populations across Africa, and Why Does It Matter?". Trends in Ecology & Evolution 33 8 (2018): 582-594. http://dx.doi.org/10.1016/j.tree.2018.05.005.
    10.1016/j.tree.2018.05.005
  25. Miller, Alex; Mills, Harriet; Ralantoharijaona, Tantely; Volasoa, Nicole Andriaholinirina; Misandeau, Chantal; Chikhi, Lounès; Bencini, Roberta; Salmona, Jordi. "Forest Type Influences Population Densities of Nocturnal Lemurs in Manompana, Northeastern Madagascar". International Journal of Primatology 39 4 (2018): 646-669. http://dx.doi.org/10.1007/s10764-018-0055-5.
    10.1007/s10764-018-0055-5
  26. Grusea, Simona; Rodríguez, Willy; Pinchon, Didier; Chikhi, Lounès; Boitard, Simon; Mazet, Olivier. "Coalescence times for three genes provide sufficient information to distinguish population structure from population size changes". Journal of Mathematical Biology 78 1-2 (2018): 189-224. http://dx.doi.org/10.1007/s00285-018-1272-4.
    10.1007/s00285-018-1272-4
  27. Anania, Alessio; Salmona, Jordi; Rasolondraibe, Emmanuel; Jan, Fabien; Chikhi, Lounès; Fichtel, Claudia; Kappeler, Peter M.; Rasoloarison, Rodin. "Taboo adherence and presence of Perrier’s sifaka (Propithecus perrieri) in Andrafiamena forest". Madagascar Conservation & Development 13 1 (2018): 6. http://dx.doi.org/10.4314/mcd.v13i1.1.
    10.4314/mcd.v13i1.1
  28. Sgarlata, Gabriele Maria; Salmona, Jordi; Aleixo-Pais, Isa; Rakotonanahary, Ando; Sousa, Ana Priscila; Kun-Rodrigues, Célia; Ralantoharijaona, Tantely; et al. "Genetic Differentiation and Demographic History of the Northern Rufous Mouse Lemur (Microcebus tavaratra) Across a Fragmented Landscape in Northern Madagascar". International Journal of Primatology 39 1 (2018): 65-89. http://dx.doi.org/10.1007/s10764-018-0015-0.
    10.1007/s10764-018-0015-0
  29. Pedersen, Casper-Emil T.; Albrechtsen, Anders; Etter, Paul D.; Johnson, Eric A.; Orlando, Ludovic; Chikhi, Lounes; Siegismund, Hans R.; Heller, Rasmus. "A southern African origin and cryptic structure in the highly mobile plains zebra". Nature Ecology & Evolution 2 3 (2018): 491-498. http://dx.doi.org/10.1038/s41559-017-0453-7.
    10.1038/s41559-017-0453-7
  30. Sharma, Reeta; Goossens, Benoit; Heller, Rasmus; Rasteiro, Rita; Othman, Nurzhafarina; Bruford, Michael W.; Chikhi, Lounès. "Genetic analyses favour an ancient and natural origin of elephants on Borneo". Scientific Reports 8 1 (2018): http://dx.doi.org/10.1038/s41598-017-17042-5.
    10.1038/s41598-017-17042-5
  31. Chikhi, L.; Rodríguez, W.; Grusea, S.; Santos, P.; Boitard, S.; Mazet, O.. "The IICR (inverse instantaneous coalescence rate) as a summary of genomic diversity: Insights into demographic inference and model choice". Heredity 120 1 (2018): 13-24. http://www.scopus.com/inward/record.url?eid=2-s2.0-85037727450&partnerID=MN8TOARS.
    10.1038/s41437-017-0005-6
  32. Knoop, Simon Benjamin; CHIKHI, Lounès ; Salmona, Jordi. "Mouse lemurs’ use of degraded habitat: a review of the literature". Lemur news 21 (2018): http://static1.1.sqspcdn.com/static/f/1200343/27923521/1528375088833/LN21.pdf?token=TiwILptZcE2X6JhGbHkekHQJi1k%3D.
    Open access • Published
  33. Salmona, Jordi; Rasolondraibe, Emmanuel; Jan, Fabien; Rakotonanahary, Ando; Ralantoharijaona, Tantely; Le Pors, Barbara; Ousseni, Dhurham Said Ali; et al. "The unique and isolated Phaner population of Analafiana (Vohémar, SAVA)". Lemur news 21 (2018): http://static1.1.sqspcdn.com/static/f/1200343/27923521/1528375088833/LN21.pdf?token=ULSsco7NUMYieHOxrXbNYa%2FBOVQ%3D.
    Published
  34. Salmona, J.; Rasolondraibe, E.; Jan, F.; Rakotonanahary, A.N.; Ralantoharijaona, T.; Le Pors, B.; Ousseni, D.S.; et al. "Re-discovering the forgotten Phaner population of the small and isolated Analafiana forest (Vohémar, SAVA)". Lemur News 21 (2018): 31-36.
    Published
  35. Salmona, J.; Heller, R.; Quéméré, E.; Chikhi, L.. "Climate change and human colonization triggered habitat loss and fragmentation in Madagascar". Molecular Ecology 26 19 (2017): 5203-5222. http://www.scopus.com/inward/record.url?eid=2-s2.0-85021444039&partnerID=MN8TOARS.
    10.1111/mec.14173
  36. López, S.; Thomas, M.G.; van Dorp, L.; Ansari-Pour, N.; Stewart, S.; Jones, A.L.; Jelinek, E.; et al. "The Genetic Legacy of Zoroastrianism in Iran and India: Insights into Population Structure, Gene Flow, and Selection". American Journal of Human Genetics 101 3 (2017): 353-368. http://www.scopus.com/inward/record.url?eid=2-s2.0-85028026843&partnerID=MN8TOARS.
    10.1016/j.ajhg.2017.07.013
  37. Prunier, J.G.; Dubut, V.; Chikhi, L.; Blanchet, S.. "Contribution of spatial heterogeneity in effective population sizes to the variance in pairwise measures of genetic differentiation". Methods in Ecology and Evolution 8 12 (2017): 1866-1877. http://www.scopus.com/inward/record.url?eid=2-s2.0-85022335273&partnerID=MN8TOARS.
    10.1111/2041-210X.12820
  38. Minhós, T.; Chikhi, L.; Sousa, C.; Vicente, L.M.; Ferreira da Silva, M.; Heller, R.; Casanova, C.; Bruford, M.W.. "Genetic consequences of human forest exploitation in two colobus monkeys in Guinea Bissau". Biological Conservation 194 (2016): 194-208. http://www.scopus.com/inward/record.url?eid=2-s2.0-84960928793&partnerID=MN8TOARS.
    10.1016/j.biocon.2015.12.019
  39. Ottoni, C.; Rasteiro, R.; Willet, R.; Claeys, J.; Talloen, P.; Van de Vijver, K.; Chikhi, L.; Poblome, J.; Decorte, R.. "Comparing maternal genetic variation across two millennia reveals the demographic history of an ancient human population in southwest Turkey". Royal Society Open Science 3 2 (2016): http://www.scopus.com/inward/record.url?eid=2-s2.0-84959422332&partnerID=MN8TOARS.
    10.1098/rsos.150250
  40. Mazet, O.; Rodríguez, W.; Grusea, S.; Boitard, S.; Chikhi, L.. "On the importance of being structured: Instantaneous coalescence rates and human evolution-lessons for ancestral population size inference?". Heredity 116 4 (2016): 362-371. http://www.scopus.com/inward/record.url?eid=2-s2.0-84960388143&partnerID=MN8TOARS.
    10.1038/hdy.2015.104
  41. Goossens, B.; Sharma, R.; Othman, N.; Kun-Rodrigues, C.; Sakong, R.; Ancrenaz, M.; Ambu, L.N.; et al. "Habitat fragmentation and genetic diversity in natural populations of the Bornean elephant: Implications for conservation". Biological Conservation 196 (2016): 80-92. http://www.scopus.com/inward/record.url?eid=2-s2.0-84958811362&partnerID=MN8TOARS.
    10.1016/j.biocon.2016.02.008
  42. Sgarlata, G.M.; Salmona, J.; Razanaparany, T.P.; Rabarivola, C.J.; Jan, F.; Rasolondraibe, E.; Andriaholinirina, N.V.; et al. "Mitochondrial genetic diversity in the crowned sifaka (Propithecus coronatus) in a fragmented landscape". Primate Conservation 30 1 (2016): 39-57. http://www.scopus.com/inward/record.url?eid=2-s2.0-85031747480&partnerID=MN8TOARS.
  43. J Salmona; M Banks; TN Ralantoharijaona; E Rasolondraibe; R Zaranaina; A Rakotonanahary; S Wohlhauser; BJ Sewall; L Chikhi. "The value of the spineless monkey orange tree (Strychnos madagascariensis) for conservation of northern sportive lemurs (Lepilemur milanoii and L. ankaranensis)". Madagascar Conservation & Development 10 2 (2015): 53-53. https://doi.org/10.4314%2Fmcd.v10i2.3.
    10.4314/mcd.v10i2.3
  44. Salmona, J.; Teixeira, H.; Rasolondraibe, E.; Aleixo-Pais, I.; Kun-Rodrigues, C.; Rakotonanahary, A.N.; Jan, F.; et al. "Genetic Diversity, Population Size, and Conservation of the Critically Endangered Perrier’s Sifaka (Propithecus perrieri)". International Journal of Primatology 36 6 (2015): 1132-1153. http://www.scopus.com/inward/record.url?eid=2-s2.0-84953636884&partnerID=MN8TOARS.
    10.1007/s10764-015-9881-x
  45. Parreira, B.R.; Chikhi, L.. "On some genetic consequences of social structure, mating systems, dispersal, and sampling". Proceedings of the National Academy of Sciences of the United States of America 112 26 (2015): E3318-E3326. http://www.scopus.com/inward/record.url?eid=2-s2.0-84937832635&partnerID=MN8TOARS.
    10.1073/pnas.1414463112
  46. Mazet, O.; Rodríguez, W.; Chikhi, L.. "Demographic inference using genetic data from a single individual: Separating population size variation from population structure". Theoretical Population Biology 104 (2015): 46-58. http://www.scopus.com/inward/record.url?eid=2-s2.0-84938719094&partnerID=MN8TOARS.
    10.1016/j.tpb.2015.06.003
  47. Amir, N.; Sahnoune, M.; Chikhi, L.; Atmani, D.. "STR-based genetic structure of the Berber population of Bejaia (Northern Algeria) and its relationships to various ethnic groups". Gene 574 1 (2015): 140-148. http://www.scopus.com/inward/record.url?eid=2-s2.0-84943581825&partnerID=MN8TOARS.
    10.1016/j.gene.2015.08.002
  48. Alves, J.M.; Lima, A.C.; Pais, I.A.; Amir, N.; Celestino, R.; Piras, G.; Monne, M.; et al. "Reassessing the evolutionary history of the 17q21 inversion polymorphism". Genome Biology and Evolution 7 12 (2015): 3239-3248. http://www.scopus.com/inward/record.url?eid=2-s2.0-84982128086&partnerID=MN8TOARS.
    10.1093/gbe/evv214
  49. Miller, A.; Ralantoharijaona, T.; Misandeau, C.; Andriaholinirina, Nicole Volasoa; Mills, H.; Bencini, R; CHIKHI, Lounès ; Salmona, J.. "A biological survey of Antsahanadraitry forest (Alan'Antanetivy corridor, Manompana) reveals the presence of the hairy-eared dwarf lemur (Allocebus trichotis)". Lemur news 19 (2015):
    Published
  50. J. M. Alves; L. Chikhi; A. Amorim; A. M. Lopes. "The 8p23 Inversion Polymorphism Determines Local Recombination Heterogeneity across Human Populations". Genome Biology and Evolution 6 4 (2014): 921-930. http://dx.doi.org/10.1093/gbe/evu064.
    10.1093/gbe/evu064
  51. Razafindramanana, J.; King, T.; Chikhi, L.; Schwitzer, C.; Ratsimbazafy, J.. "Special section on the crowned sifaka propithecus coronatus: Introduction". Primate Conservation 28 1 (2014): 39-42. http://www.scopus.com/inward/record.url?eid=2-s2.0-84926489885&partnerID=MN8TOARS.
    10.1896/052.028.0115
  52. Salmona, J.; Rasolondraibe, E.; Jan, F.; Besolo, A.; Rakotoarisoa, H.; Meyler, S.V.; Wohlhauser, S.; Rabarivola, C.; Chikhi, L.. "Conservation status and abundance of the crowned sifaka (Propithecus coronatus)". Primate Conservation 28 1 (2014): 73-83. http://www.scopus.com/inward/record.url?eid=2-s2.0-84926453641&partnerID=MN8TOARS.
    10.1896/052.028.0122
  53. Maja P Greminger; Kai N Stölting; Alexander Nater; Benoit Goossens; Natasha Arora; Rémy Bruggmann; Andrea Patrignani; et al. "Generation of SNP datasets for orangutan population genomics using improved reduced-representation sequencing and direct comparisons of SNP calling algorithms". BMC Genomics 15 1 (2014): 16-16. http://dx.doi.org/10.1186/1471-2164-15-16.
    10.1186/1471-2164-15-16
  54. Kun-Rodrigues, C.; Salmona, J.; Besolo, A.; Rasolondraibe, E.; Rabarivola, C.; Marques, T.A.; Chikhi, L.. "New density estimates of a threatened sifaka species (propithecus coquereli) in ankarafantsika national park". American Journal of Primatology 76 6 (2014): 515-528. http://www.scopus.com/inward/record.url?eid=2-s2.0-84899976653&partnerID=MN8TOARS.
    10.1002/ajp.22243
  55. Schwitzer, C.; Mittermeier, R.A.; Johnson, S.E.; Donati, G.; Irwin, M.; Peacock, H.; Ratsimbazafy, J.; et al. "Averting lemur extinctions amid Madagascar's political crisis". Science 343 6173 (2014): 842-843. http://www.scopus.com/inward/record.url?eid=2-s2.0-84894278452&partnerID=MN8TOARS.
    10.1126/science.1245783
  56. Besnard, G.; Dupuy, J.; Larter, M.; Cuneo, P.; Cooke, D.; Chikhi, L.. "History of the invasive African olive tree in Australia and Hawaii: Evidence for sequential bottlenecks and hybridization with the Mediterranean olive". Evolutionary Applications 7 2 (2014): 195-211. http://www.scopus.com/inward/record.url?eid=2-s2.0-84892978146&partnerID=MN8TOARS.
    10.1111/eva.12110
  57. Schwitzer, C.; Chikhi, L.; Donati, G.; Irwin, M.; Johnson, S.E.; Mittermeier, R.A.; Peacock, H.; et al. "Protecting lemurs: Response". Science 344 6182 (2014): 358-360. http://www.scopus.com/inward/record.url?eid=2-s2.0-84899516361&partnerID=MN8TOARS.
    10.1126/science.344.6182.358-c
  58. Salmona, J.; Jan, F.; Rasolondraibe, E.; Besolo, A.; Ousseni, D.S.; Beck, A.; Zaranaina, R.; et al. "Extensive survey of the endangered coquerel's sifaka Propithecus coquereli". Endangered Species Research 25 2 (2014): 175-183. http://www.scopus.com/inward/record.url?eid=2-s2.0-84940376832&partnerID=MN8TOARS.
    10.3354/esr00622
  59. Salmona, J.; Rakotonanahary, A.N.; Thani, I.M.; Zaranaina, R.; Ralantoharijaona, T.; Jan, F.; Rasolondraibe, E.; et al. "Estimation des densités et tailles de population du Microcèbe Roux du Nord de (Microcebus tavaratra) dans la région Loky-Manambato (Daraina)". Lemur news 18 (2014):
  60. Salmona, J.; Ralantoharijaona, T.; Thani, I.M.; Rakotonanahary, A.N.; Zaranaina, R.; Jan, F.; Rasolondraibe, E.; et al. "Daraina sportive lemur (Lepilemur milanoii) density and population size estimates in most of its distribution range: the Loky-Manambato region". Lemur news 18 (2014):
  61. Sharma, R.; Goossens, B.; Kun-Rodrigues, C.; Teixeira, T.; Othman, N.; Boone, J.Q.; Jue, N.K.; et al. "Erratum: Two different high throughput sequencing approaches identify thousands of de novo genomic markers for the genetically depleted bornean elephant". PLoS ONE 8 7 (2013): http://www.scopus.com/inward/record.url?eid=2-s2.0-84898745951&partnerID=MN8TOARS.
    10.1371/annotation/8aaa2a9c-9c15-4214-808d-db8b0bd8ab88
  62. Vanpé, C.; Salmona, J.; Pais, I.; Kun-Rodrigues, C.; Pichon, C.; Meyler, S.V.; Rabarivola, C.; et al. "Noninvasive molecular sexing: An evaluation and validation of the SRY- and amelogenin-based method in three new lemur species". American Journal of Physical Anthropology 150 3 (2013): 492-503. http://www.scopus.com/inward/record.url?eid=2-s2.0-84874420680&partnerID=MN8TOARS.
    10.1002/ajpa.22222
  63. Quéméré, E.; Hibert, F.; Miquel, C.; Lhuillier, E.; Rasolondraibe, E.; Champeau, J.; Rabarivola, C.; et al. "A DNA Metabarcoding Study of a Primate Dietary Diversity and Plasticity across Its Entire Fragmented Range". PLoS ONE 8 3 (2013): http://www.scopus.com/inward/record.url?eid=2-s2.0-84875104888&partnerID=MN8TOARS.
    10.1371/journal.pone.0058971
  64. Rasteiro, R.; Chikhi, L.. "Female and Male Perspectives on the Neolithic Transition in Europe: Clues from Ancient and Modern Genetic Data". PLoS ONE 8 4 (2013): http://www.scopus.com/inward/record.url?eid=2-s2.0-84876262517&partnerID=MN8TOARS.
    10.1371/journal.pone.0060944
  65. Heller, R.; Chikhi, L.; Siegismund, H.R.. "The Confounding Effect of Population Structure on Bayesian Skyline Plot Inferences of Demographic History". PLoS ONE 8 5 (2013): http://www.scopus.com/inward/record.url?eid=2-s2.0-84877134593&partnerID=MN8TOARS.
    10.1371/journal.pone.0062992
  66. Paz-Vinas, I.; Quéméré, E.; Chikhi, L.; Loot, G.; Blanchet, S.. "The demographic history of populations experiencing asymmetric gene flow: Combining simulated and empirical data". Molecular Ecology 22 12 (2013): 3279-3291. http://www.scopus.com/inward/record.url?eid=2-s2.0-84879016166&partnerID=MN8TOARS.
    10.1111/mec.12321
  67. Salmona, J.; Jan, F.; Rasolondraibe, E.; Zaranaina, R.; Ousseni, D.S.; Mohamed-Thani, I.; Rakotonanahary, A.N.; et al. "Survey of the Critically Endangered Perrier's sifaka (Propithecus perrieri) across most of its distribution range". Lemur news 17 (2013): 9-12.
  68. Sabin, E.; Delarue, C.; Misandeau, C.; Besse, P.; Salmona, J.; CHIKHI, Lounès. "Taille de la population d'Avahi laniger dans la réserve d'Ambodiriana-Manompana, Nord-est de Madagascar". Lemur news 17 (2013): 70-72.
    Published
  69. Garnier-Géré, P.; CHIKHI, Lounès. "Population Subdivision, Hardy–Weinberg Equilibrium and the Wahlund Effect". eLS (2013): https://onlinelibrary.wiley.com/doi/full/10.1002/9780470015902.a0005446.pub3.
    Published
  70. Gamba, C.; FernÚndez, E.; Tirado, M.; Deguilloux, M.F.; Pemonge, M.H.; Utrilla, P.; Edo, M.; et al. "Ancient DNA from an Early Neolithic Iberian population supports a pioneer colonization by first farmers". Molecular Ecology 21 1 (2012): 45-56. http://www.scopus.com/inward/record.url?eid=2-s2.0-84155160700&partnerID=MN8TOARS.
    10.1111/j.1365-294X.2011.05361.x
  71. Sousa, V.C.; Beaumont, M.A.; Fernandes, P.; Coelho, M.M.; Chikhi, L.. "Population divergence with or without admixture: Selecting models using an ABC approach". Heredity 108 5 (2012): 521-530. http://www.scopus.com/inward/record.url?eid=2-s2.0-84859974526&partnerID=MN8TOARS.
    10.1038/hdy.2011.116
  72. Meyler, S.V.; Salmona, J.; Ibouroi, M.T.; Besolo, A.; Rasolondraibe, E.; Radespiel, U.; Rabarivola, C.; Chikhi, L.. "Density Estimates of Two Endangered Nocturnal Lemur Species From Northern Madagascar: New Results and a Comparison of Commonly Used Methods". American Journal of Primatology 74 5 (2012): 414-422. http://www.scopus.com/inward/record.url?eid=2-s2.0-84859898614&partnerID=MN8TOARS.
    10.1002/ajp.21997
  73. Rasteiro, R.; Bouttier, P.A.; Sousa, V.C.; Chikhi, L.. "Investigating sex-biased migration during the Neolithic transition in Europe, using an explicit spatial simulation framework.". Proceedings. Biological sciences / The Royal Society 279 1737 (2012): 2409-2416. http://www.scopus.com/inward/record.url?eid=2-s2.0-84862232165&partnerID=MN8TOARS.
    10.1098/rspb.2011.2323
  74. Quéméré, E.; Amelot, X.; Pierson, J.; Crouau-Roy, B.; Chikhi, L.. "Genetic data suggest a natural prehuman origin of open habitats in northern Madagascar and question the deforestation narrative in this region". Proceedings of the National Academy of Sciences of the United States of America 109 32 (2012): 13028-13033. http://www.scopus.com/inward/record.url?eid=2-s2.0-84864703849&partnerID=MN8TOARS.
    10.1073/pnas.1200153109
  75. Salmona, J.; Salamolard, M.; Fouillot, D.; Ghestemme, T.; Larose, J.; Centon, J.-F.; Sousa, V.; et al. "Signature of a pre-human population decline in the critically endangered reunion island endemic forest bird coracina newtoni". PLoS ONE 7 8 (2012): http://www.scopus.com/inward/record.url?eid=2-s2.0-84865173885&partnerID=MN8TOARS.
    10.1371/journal.pone.0043524
  76. Sharma, R.; Arora, N.; Goossens, B.; Nater, A.; Morf, N.; Salmona, J.; Bruford, M.W.; et al. "Effective Population Size Dynamics and the Demographic Collapse of Bornean Orang-Utans". PLoS ONE 7 11 (2012): http://www.scopus.com/inward/record.url?eid=2-s2.0-84869234346&partnerID=MN8TOARS.
    10.1371/journal.pone.0049429
  77. Sharma, R.; Goossens, B.; Kun-Rodrigues, C.; Teixeira, T.; Othman, N.; Boone, J.Q.; Jue, N.K.; et al. "Two Different High Throughput Sequencing Approaches Identify Thousands of De Novo Genomic Markers for the Genetically Depleted Bornean Elephant". PLoS ONE 7 11 (2012): http://www.scopus.com/inward/record.url?eid=2-s2.0-84869784350&partnerID=MN8TOARS.
    10.1371/journal.pone.0049533
  78. Alves, J.M.; Lopes, A.M.; Chikhi, L.; Amorim, A.. "On the structural plasticity of the human genome: Chromosomal inversions revisited". Current Genomics 13 8 (2012): 623-632. http://www.scopus.com/inward/record.url?eid=2-s2.0-84870196858&partnerID=MN8TOARS.
    10.2174/138920212803759703
  79. Sousa, V.; Penha, F.; Pala, I.; CHIKHI, Lounès ; Coelho, M. M.; Sousa, V. C.; Chikhi, L.. "Conservation genetics of a critically endangered Iberian minnow: evidence of population decline and extirpations". Animal Conservation 13 2 (2010): 162-171. http://dx.doi.org/10.1111/j.1469-1795.2009.00317.x.
    Published • 10.1111/j.1469-1795.2009.00317.x
  80. Beaumont, M. A.; Nielsen, R.; Robert, C.; Hey, J.; Gaggiotti, O.; Knowles, L.; Estoup, A.; et al. "In defence of model-based inference in phylogeography REPLY". Molecular Ecology 19 3 (2010): 436-446.
    Published • 10.1111/j.1365-294X.2009.04515.x
  81. Bray, T. C.; Sousa, V. C.; Parreira, B.; Bruford, M. W.; Chikhi, L.. "2BAD: an application to estimate the parental contributions during two independent admixture events". Molecular Ecology Resources 10 3 (2010): 538-541.
    Published • 10.1111/j.1755-0998.2009.02766.x
  82. Quemere, E.; Champeau, J.; Besolo, A.; Rasolondraibe, E.; Rabarivola, C.; Crouau-Roy, B.; Chikhi, L.. "Spatial Variation in Density and Total Size Estimates in Fragmented Primate Populations: The Golden-Crowned Sifaka (Propithecus tattersalli)". American Journal of Primatology 72 1 (2010): 72-80.
    Published • 10.1002/ajp.20754
  83. Quemere, E.; Crouau-Roy, B.; Rabarivola, C.; Louis, E. E.; Chikhi, L.. "Landscape genetics of an endangered lemur (Propithecus tattersalli) within its entire fragmented range". Molecular Ecology 19 8 (2010): 1606-1621.
    Published • 10.1111/j.1365-294X.2010.04581.x
  84. Bruford, M.W.; Ancrenaz, M.; Chikhi, L.; Lackman-Ancrenaz, I.; Andau, M.; Ambu, L.; Goossens, B.. "Projecting genetic diversity and population viability for the fragmented orang-utan population in the Kinabatangan floodplain, Sabah, Malaysia". Endangered Species Research 12 3 (2010): 249-261. http://www.scopus.com/inward/record.url?eid=2-s2.0-78449287751&partnerID=MN8TOARS.
    10.3354/esr00295
  85. Schneider, N.; Chikhi, L.; Currat, M.; Radespiel, U.. "Signals of recent spatial expansions in the grey mouse lemur (Microcebus murinus)". BMC Evolutionary Biology 10 1 (2010): http://www.scopus.com/inward/record.url?eid=2-s2.0-77951028543&partnerID=MN8TOARS.
    10.1186/1471-2148-10-105
  86. Salmona, J.; Dawson, D.A.; Fouillot, D.; Ghestemme, T.; Thebaud, C.; Chikhi, L.; Salamolard, M.. "The utility of existing passerine microsatellite markers for genetic studies in endangered species: As demonstrated for a critically endangered forest bird endemic to réunion island, the réunion cuckooshrike (Coracina newtoni)". Conservation Genetics Resources 2 SUPPL.1 (2010): 361-364. http://www.scopus.com/inward/record.url?eid=2-s2.0-84859938085&partnerID=MN8TOARS.
    10.1007/s12686-010-9254-x
  87. Chikhi, L.; Sousa, V.C.; Luisi, P.; Goossens, B.; Beaumont, M.A.. "The confounding effects of population structure, genetic diversity and the sampling scheme on the detection and quantification of population size changes". Genetics 186 3 (2010): 983-995. http://www.scopus.com/inward/record.url?eid=2-s2.0-78951476873&partnerID=MN8TOARS.
    10.1534/genetics.110.118661
  88. Quéméré, Erwan; Louis, Edward E.; Ribéron, Alexandre; CHIKHI, Lounès ; Crouau-Roy, Brigitte; Quéméré, E.; Louis Jr., E.E.; et al. "Non-invasive conservation genetics of the critically endangered golden-crowned sifaka (Propithecus tattersalli): high diversity and significant genetic differentiation over a small range". Conservation Genetics 11 3 (2009): 675-687. http://dx.doi.org/10.1007/s10592-009-9837-9.
    10.1007/s10592-009-9837-9
  89. Bray, T. C.; Chikhi, L.; Sheppy, A. J.; Bruford, M. W.. "The population genetic effects of ancestry and admixture in a subdivided cattle breed". Animal Genetics 40 4 (2009): 393-400.
    Published • 10.1111/j.1365-2052.2009.01850.x
  90. Craul, M.; Chikhi, L.; Sousa, V. C.; Olivieri, G. L.; Rabesandratana, A.; Zimmermann, E.; Radespiel, U.. "Influence of forest fragmentation on an endangered large-bodied lemur in northwestern Madagascar". Biological Conservation 142 12 (2009): 2862-2871.
    Published • 10.1016/j.biocon.2009.05.026
  91. Giovannini, A.; Zanghirati, G.; Beaumont, M. A.; Chikhi, L.; Barbujani, G.. "A novel parallel approach to the likelihood-based estimation of admixture in population genetics". Bioinformatics 25 11 (2009): 1440-1441.
    Published • 10.1093/bioinformatics/btp136
  92. Parreira, B.; Trussart, M.; Sousa, V. C.; Hudson, R.; Chikhi, L.. "SPAms: A user-friendly software to simulate population genetics data under complex demographic models". Molecular Ecology Resources 9 3 (2009): 749-753.
    Published • 10.1111/j.1755-0998.2009.02533.x
  93. Rasteiro, R.; Chikhi, L.. "Revisiting the peopling of Japan: an admixture perspective". Journal of Human Genetics 54 6 (2009): 349-354.
    Published • 10.1038/jhg.2009.39
  94. Sousa, V. C.; Fritz, M.; Beaumont, M. A.; Chikhi, L.. "Approximate Bayesian Computation Without Summary Statistics: The Case of Admixture". Genetics 181 4 (2009): 1507-1519.
    Published • 10.1534/genetics.108.098129
  95. Chikhi, L.; Destro-Bisol, G.; Pascali, V.; Baravelli, V.; Dobosz, M.; Barbujani, G.; CHIKHI, Lounès. "Clinal variation in the nuclear DNA of Europeans". Human Biology 81 5-6 (2009): 625-638. http://www.scopus.com/inward/record.url?eid=2-s2.0-77952948124&partnerID=MN8TOARS.
    10.3378/027.081.0611
  96. Chikhi, L.. "Update to Chikhi et al.'s "clinal variation in the nuclear DNA of Europeans" (1998): Genetic data and storytelling - From archaeogenetics to astrologenetics?". Human Biology 81 5-6 (2009): 639-643. http://www.scopus.com/inward/record.url?eid=2-s2.0-77952910924&partnerID=MN8TOARS.
    10.3378/027.081.0612
  97. Bonhomme, M.; Blancher, A.; Cuartero, S.; Chikhi, L.; Crouau-Roy, B.. "Origin and number of founders in an introduced insular primate: estimation from nuclear genetic data". Molecular Ecology 17 4 (2008): 1009-1019.
    Published • 10.1111/j.1365-294X.2007.03645.x
  98. Chikhi, L.. "Genetic markers: How accurate can genetic data be?". Heredity 101 6 (2008): 471-472.
    Published • 10.1038/hdy.2008.106
  99. Olivieri, G. L.; Sousa, V. C.; Chikhi, L.; Radespiel, U.; Olivieri, Gillian L.; Sousa, Vitor; Chikhi, Lounès; Radespiel, Ute. "From genetic diversity and structure to conservation: Genetic signature of recent population declines in three mouse lemur species (Microcebus spp.)". Biological Conservation 141 5 (2008): 1257-1271. http://dx.doi.org/10.1016/j.biocon.2008.02.025.
    Published • 10.1016/j.biocon.2008.02.025
  100. Radespiel, U.; Rakotondravony, R.; Chikhi, L.. "Natural and anthropogenic determinants of genetic structure in the largest remaining population of the endangered golden-brown mouse lemur, Microcebus ravelobensis". American Journal of Primatology 70 9 (2008): 860-870.
    Published • 10.1002/ajp.20574
  101. Sousa, V. C.; Penha, F.; Collares-Pereira, M. J.; Chikhi, L.; Coelho, M. M.. "Genetic structure and signature of population decrease in the critically endangered freshwater cyprinid Chondrostoma lusitanicum". Conservation Genetics 9 4 (2008): 791-805.
    Published • 10.1007/s10592-007-9399-7
  102. Amaral, A. J.; Silva, A. B.; Grosso, A. R.; Chikhi, L.; Bastos-Silveira, C.; Dias, D.; Amaral, A.J.; Silva, A.B.; Grosso, A.R.. "Detection of hybridization and species identification in domesticated and wild quails using genetic markers". Folia Zoologica 56 56 (2007): 285-300. http://www.scopus.com/inward/record.url?eid=2-s2.0-36048956045&partnerID=MN8TOARS.
    Published
  103. Adepo-Gourène, B.; Chikhi, L.; Agnèse, J.-F.; Gourène, G.; Hervé, A.. "A preliminary study of allozyme differences amongst Carcharhinus sharks from the continental slope near Abidjan, Côte d'Ivoire". African Journal of Aquatic Science 32 3 (2007): 305-310. http://www.scopus.com/inward/record.url?eid=2-s2.0-37149035996&partnerID=MN8TOARS.
    10.2989/AJAS.2007.32.3.11.310
  104. Goossens, B.; Chikhi, L.; Ancrenaz, M.; Lackman-Ancrenaz, I.; Andau, P.; Bruford, M. W.. "Genetic signature of anthropogenic population collapse in orang-utans". Plos Biology 4 e25 (2006): 285-291.
    Published • 10.1371/journal.pbio.0040025
  105. Goossens, B.; Setchell, J. M.; James, S. S.; Funk, S. M.; Chikhi, L.; Abulani, A.; Ancrenaz, M.; Lackman-Ancrenaz, I.; Bruford, M. W.. "Philopatry and reproductive success in Bornean orang-utans (Pongo pygmaeus)". Molecular Ecology 15 9 (2006): 2577-2588.
    Published • 10.1111/j.1365-294X.2006.02952.x
  106. Barbujani, G.; Chikhi, L.. "Population genetics: DNAs from the European Neolithic". Heredity 97 2 (2006): 84-85. http://www.scopus.com/inward/record.url?eid=2-s2.0-33748419800&partnerID=MN8TOARS.
    10.1038/sj.hdy.6800852
  107. Altunok, V.; Koban, E.; Chikhi, L.; Schaffer, A.; Pedersen, N. C.; Nizamlioglu, M.; Togan, I.; Pedersen, N.C.. "Genetic evidence for the distinctness of Kangal dogs". Bulletin of the Veterinary Institute in Pulawy 49 2 (2005): 249-254. http://www.scopus.com/inward/record.url?eid=2-s2.0-23644450394&partnerID=MN8TOARS.
    Published
  108. Goossens, B.; Chikhi, L.; Jalil, M. F.; Ancrenaz, M.; Lackman-Ancrenaz, I.; Mohamed, M.; Andau, P.; et al. "Patterns of genetic diversity and migration in increasingly fragmented and declining orang-utan (Pongo pygmaeus) populations from Sabah, Malaysia". Molecular Ecology 14 2 (2005): 441-456. http://www.scopus.com/inward/record.url?eid=2-s2.0-13444283975&partnerID=MN8TOARS.
    Published • 10.1111/j.1365-294X.02421.x
  109. Bortolini, M. C.; Thomas, M. G.; Chikhi, L.; Aguilar, J. A.; Castro-De-Guerra, D.; Salzano, F. M.; Ruiz-Linares, A.; et al. "Ribeiro's typology, genomes, and Spanish colonialism, as viewed from Gran Canaria and Colombia". Genetics and Molecular Biology 27 1 (2004): 1-8. http://www.scopus.com/inward/record.url?eid=2-s2.0-2342622132&partnerID=MN8TOARS.
    Published
  110. Chikhi, L.; Goossens, B.; Treanor, A.; Bruford, M. W.. "Population genetic structure of and inbreeding in an insular cattle breed, the Jersey, and its implications for genetic resource management". Heredity 92 5 (2004): 396-401.
    Published • 10.1038/sj.hdy.6800433
  111. Dupanloup, I.; Bertorelle, G.; Chikhi, L.; Barbujani, G.. "Estimating the impact of prehistoric admixture on the genome of Europeans". Molecular Biology and Evolution 21 7 (2004): 1361-1372.
    Published • 10.1093/molbev/msh135
  112. Laitung, B.; Chauvet, E.; Feau, N.; Feve, K.; Chikhi, L.; Gardes, M.; Beryl Laitung; et al. "Genetic diversity in Tetrachaetum elegans, a mitosporic aquatic fungus". Molecular Ecology 13 6 (2004): 1679-1692. http://dx.doi.org/10.1111/j.1365-294x.2004.02135.x.
    Published • 10.1111/j.1365-294X.2004.02135.x
  113. Bentley, R. A.; Chikhi, L.; Price, T. D.; Bentley, R.A.; Price, T.D.. "The Neolithic transition in Europe: Comparing broad scale genetic and local scale isotopic evidence". Antiquity 77 295 (2003): 63-66. http://www.scopus.com/inward/record.url?eid=2-s2.0-0037367518&partnerID=MN8TOARS.
    Published
  114. Chikhi, Lounès. "Postdocs face hardship across mainland Europe". Nature 415 6869 (2002): 259-259. http://dx.doi.org/10.1038/415259a.
    10.1038/415259a
  115. Chikhi, L.; Nichols, R. A.; Barbujani, G.; Beaumont, M. A.. "Y genetic data support the Neolithic demic diffusion model". Proceedings of the National Academy of Sciences of the United States of America 99 17 (2002): 11008-11013.
    Published • 10.1073/pnas.162158799
  116. Goldstein, D. B.; Chikhi, L.. "Human migrations and population structure: What we know and why it matters". Annual Review of Genomics and Human Genetics 3 0 (2002): 129-152.
    Published • 10.1146/annurev.genom.3.022502.103200
  117. Chikhi, L.. "Postdocs face hardship across mainland europe: Those who follow the funding and work abroad may not find a job when they go home [1] [multiple letters]". Nature 415 6869 (2002): http://www.scopus.com/inward/record.url?eid=2-s2.0-0037122802&partnerID=MN8TOARS.
  118. Langella, O.; Chikhi, L.; Beaumont, M. A.; Beaumont, M.A.. "LEA (likelihood-based estimation of admixture): a program to estimate simultaneously admixture and time since the admixture event". Molecular Ecology Notes 1 4 (2001): 357-358. http://www.scopus.com/inward/record.url?eid=2-s2.0-0346906674&partnerID=MN8TOARS.
    Published • 10.1046/j.1471-8278
  119. Chikhi, L.; Bruford, M.W.; Beaumont, M.A.; Bruford, M. W.; Beaumont, M. A.. "Estimation of admixture proportions: A likelihood-based approach using Markov Chain Monte Carlo". Genetics 158 3 (2001): 1347-1362. http://www.scopus.com/inward/record.url?eid=2-s2.0-0034918729&partnerID=MN8TOARS.
    Published
  120. Goossens, B.; Chikhi, L.; Taberlet, P.; Waits, L.P.; Allainé, D.; Waits, L. P.; Allaine, D.. "Microsatellite analysis of genetic variation among and within Alpine marmot populations in the French Alps". Molecular Ecology 10 1 (2001): 41-52. http://www.scopus.com/inward/record.url?eid=2-s2.0-0035143965&partnerID=MN8TOARS.
    Published • 10.1046/j.1365-294X.2001.01192.x
  121. Goossens, B.; Chikhi, L.; Utami, S.S.; De Ruiter, J.; Bruford, M.W.. "A multi-samples, multi-extracts approach for microsatellite analysis of faecal samples in an arboreal ape". Conservation Genetics 1 2 (2000): 157-162. http://www.scopus.com/inward/record.url?eid=2-s2.0-0000762468&partnerID=MN8TOARS.
  122. Bickham, J.W.; Sandhu, S.; Hebert, P.D.N.; Chikhi, L.; Athwal, R.; Bickham, J. W.; Hebert, P. D. N.. "Effects of chemical contaminants on genetic diversity in natural populations: Implications for biomonitoring and ecotoxicology". Mutation Research - Reviews in Mutation Research 463 1 (2000): 33-51. http://www.scopus.com/inward/record.url?eid=2-s2.0-0034214289&partnerID=MN8TOARS.
    Published • 10.1016/S1383-5742(00)00004-1
  123. Chikhi, L.; Bonhomme, F.; Agnese, J. F.; Agnèse, J.-F.. "Low genetic variability in a widely distributed and abundant clupeid species, Sardinella aurita. New empirical results and interpretations". Journal of Fish Biology 52 5 (1998): 861-878. http://www.scopus.com/inward/record.url?eid=2-s2.0-0032078703&partnerID=MN8TOARS.
    Published • 10.1006/jfbi.1997.0637
  124. Chikhi, L.; Destro-Bisol, G.; Bertorelle, G.; Pascali, V.; Barbujani, G.. "Clines of nuclear DNA markers suggest a largely Neolithic ancestry of the European gene pool". Proceedings of the National Academy of Sciences of the United States of America 95 15 (1998): 9053-9058. http://www.scopus.com/inward/record.url?eid=2-s2.0-0032555227&partnerID=MN8TOARS.
    Published • 10.1073/pnas.95.15.9053
  125. Barbujani, G.; Bertorelle, G.; Chikhi, L.; Richards, M.; Sykes, B.; Mackey, D.; Oostra, R.-J.; et al. "Evidence for Paleolithic and Neolithic gene flow in Europe [2] (multiple letters)". American Journal of Human Genetics 62 2 (1998): 488-491. http://www.scopus.com/inward/record.url?eid=2-s2.0-0031889484&partnerID=MN8TOARS.
    10.1086/301719
  126. Lounès Chikhi; Jean-François Agnèse; François Bonhomme. "Fortes différences des ADN mitochonclriaux de populations de Sardinella aurita de la mer Méditerranée et de l'Atlantique Est". Comptes Rendus de l'Académie des Sciences - Series III - Sciences de la Vie 320 4 (1997): 289-297. http://dx.doi.org/10.1016/s0764-4469(97)82770-9.
    10.1016/s0764-4469(97)82770-9
  127. De García León, F.J.; Chikhi, L.; Bonhomme, F.; DeLeon, F. J. G.. "Microsatellite polymorphism and population subdivision in natural populations of European sea bass Dicentrarchus labrax (Linnaeus, 1758)". Molecular Ecology 6 1 (1997): 51-62. http://www.scopus.com/inward/record.url?eid=2-s2.0-0031051940&partnerID=MN8TOARS.
    Published
  128. Chikhi, L.; Agnèse, J.-F.; Bonhomme, F.; Agnese, J. F.. "Marked mitochondrial DNA differences between Mediterranean and Eastern Atlantic populations of the round sardinella, Sardinella aurita | Fortes differences des ADN mitochondriaux de populations de Sardinella aurita de la mer Mediterranee et de l'Atlantique Est". Comptes Rendus de l'Academie des Sciences - Serie III 320 4 (1997): 289-297. http://www.scopus.com/inward/record.url?eid=2-s2.0-0031112487&partnerID=MN8TOARS.
    Published • 10.1016/S0764-4469(97)82770-9
  129. Borsa, P.; Naciri, M.; Bahri, L.; Chikhi, L.; Garcia de Leon, F.J.; Kotoulas, G.; Bonhomme, F.. "Infraspecific zoogeography of the Mediterranean: population genetic analysis on sixteen Atlanto-Mediterranean species (fishes and invertebrates) | Zoogeographie infra-specifique de la Mer Mediterranee: analyse des donnees genetiques populationnelles sur seize especes atlanto-mediterraneennes (poissons et invertebres)". Vie et Milieu 47 4 (1997): 295-305. http://www.scopus.com/inward/record.url?eid=2-s2.0-0031403021&partnerID=MN8TOARS.
  130. Borsa, P.; Naciri, M.; CHIKHI, Lounès ; Garcia de Leon, F.J.; Kotoulas, G.; Bonhomme, F.. "Zoogéographie infraspécifique de la mer Méditerranée". Vie et Milieu 47 4 (1997): 295-305.
    Published
  131. Richard-Yris, Marie-Annick; CHIKHI, Lounès. "Maternal behaviour in domestic hens (Gallus gallus domesticus): cues from chicks and maintenance of maternal responsiveness". International Journal of Comparative Psychology 4 4 (1991): 275-286. https://escholarship.org/uc/item/0623f4f0.
    Open access • Published
Magazine article
  1. "Un berceau à l’échelle du continent africain", La Recherche, 2020
  2. CHIKHI, Lounès ; d'Errico, F.. "Vers une origine graduelle et composite de l’humanité et des cultures modernes", La Recherche, 2020
  3. d'Errico, F.; CHIKHI, Lounès. "La nascita delle culture umane", Le Scienze, 2019
  4. d'Errico, F.; CHIKHI, Lounès. "Ni d’Eve ni d’Adam : les origines Homo sapiens", Archéologia, 2018
  5. Besolo, C.J.; Rasolondraibe, E.; Quéméré, E.; Rabarivola, C.; Crouau-Roy, B.; CHIKHI, Lounès. "Le propithèque de Tattersall conservation dune espèce de lémurien menacée", CEPA (Conservation des Espèces et des Populations Animales) Magazine, 2009
  6. CHIKHI, Lounès. "Nos ancêtres dans nos gènes", La Recherche, 2008
  7. CHIKHI, Lounès ; Quéméré, E.; Crouau-Roy, B.. "L'Or de Daraina", CEPA (Conservation des Espèces et des Populations Animales) Magazine, 2006
Newspaper article
  1. CHIKHI, Lounès. "Diversité génétique et évolution humaine", Journal de l Université Paul Sabatier, 2009
  2. Dionísio, F.; Gordo, I.; CHIKHI, Lounès ; Bettencourt Dias, M.; Martinho, R.; Magalhães, S.. "Será que existem raças humanas?", Público, 2007, https://www.publico.pt/2007/11/03/jornal/sera-que-existem-racas-humanas-236150.
  3. Goossens, B.; CHIKHI, Lounès ; Bruford, M.W.. "Jersey cattle what the genes tell us", The Journal of the Royal Jersey Agricultural Horticultural Society, 2001
  4. CHIKHI, Lounès ; Goossens, B.; Bruford, M.W.. "A study of the genes of Jersey cattle", The Journal of the Royal Jersey Agricultural Horticultural Society, 1999
Preprint
  1. Rémi Tournebize; Lounès Chikhi. "Questioning Neanderthal admixture: on models, robustness and consensus in human evolution". 2023. https://doi.org/10.1101/2023.04.05.535686.
    10.1101/2023.04.05.535686
  2. Gabriele Maria Sgarlata; Tiago Maié; Tiago de Zoeten; Rita Rasteiro; Lounès Chikhi. "The effect of habitat loss and fragmentation on isolation-by-distance and time". 2022. https://doi.org/10.1101/2022.10.26.513874.
    10.1101/2022.10.26.513874
  3. Gabriele Maria Sgarlata; Tiago Maié; Tiago de Zoeten; Rita Rasteiro; Lounès Chikhi. "On the genetic consequences of habitat contraction: edge effects and habitat loss". 2022. https://doi.org/10.1101/2022.10.25.513679.
    10.1101/2022.10.25.513679
Report
  1. Andriaholinirina, N.V.; Baden, A.; Blanco, M.; CHIKHI, Lounès ; Cooke, A.; Davies, N.; Dolch, R.; et al. 2014. Eulemur macaco. The IUCN Red List of Threatened Species 2014.

Other

Other output
  1. Heterogeneity in effective size across the genome: effects on the Inverse Instantaneous Coalescence Rate (IICR) and implications for demographic inference under linked selection. 2021. Simon Boitard; Armando Arredondo; Camille Noûs; Lounès Chikhi; Olivier Mazet. https://doi.org/10.1101/2021.06.11.448122.
    10.1101/2021.06.11.448122
  2. Inferring number of populations and changes in connectivity under the n-island model. 2020. Armando Arredondo; Beatriz Mourato; Khoa Nguyen; Simon Boitard; Willy Rodríguez; Camille Noûs; Olivier Mazet; Lounès Chikhi. https://doi.org/10.1101/2020.09.03.282251.
    10.1101/2020.09.03.282251
  3. Consequences of breed formation on patterns of genomic diversity and differentiation: the case of highly diverse peripheral Iberian cattle. 2018. Rute R. da Fonseca; Irene Ureña; Sandra Afonso; Ana Elisabete Pires; Emil Jørsboe; Lounes Chikhi; Catarina Ginja. https://doi.org/10.1101/466821.
    10.1101/466821
  4. The IICR and the non-stationary structured coalescent: demographic inference with arbitrary changes in population structure. 2018. Willy Rodríguez; Olivier Mazet; Simona Grusea; Simon Boitard; Lounès Chikhi. https://doi.org/10.1101/341750.
    10.1101/341750
  5. 18 Europe and western Asia: genetics and population history. 2013. Mark G. Thomas; Toomas Kivisild; Lounes Chikhi; Joachim Burger.
    10.1002/9781444351071.wbeghm818
  6. Software SPAms (A user-friendly software to simulate population genetics data under complex demographic models). Described in the paper Parreira et al. (2009, Molecular Ecology Resources). 2009. Parreira, B.; Trussart, M.; Sousa, V.; Hudson, R.; CHIKHI, Lounès.
  7. Software 2BAD (an application to estimate the parental contributions during two independent admixture events). Described in Bray et al. (2009, Molecular Ecology Resources).. 2009. Bray, T. C.; Sousa, V.; Parreira, B.; Bruford, Michael W.; CHIKHI, Lounès.
  8. Software parLEA (a novel parallel approach to the likelihood-based estimation of admixture in population genetics). Described in Giovannini et al. (2009, Bioinformatics).. 2009. Giovannini, A.; Zanghirati, G.; Beaumont, M. A.; CHIKHI, Lounès ; Barbujani, G..
  9. Population Subdivision, Hardy-Weinberg Equilibrium and the Wahlund Effect. 2001. Pauline Garnier-Géré; Lounès Chikhi.
    10.1002/9780470015902.a0005446.pub3
  10. Software LEA (Likelihood-based estimation of admixture). Software based on the admixture method developed in the paper Chikhi et al. (2001, Genetics). Site http://www.cnrs gif.fr/pge/bioinfo/lea/index.php?lang=en. 2001. Langella, O.; CHIKHI, Lounès ; Beaumont, M.A..
  11. Software GENETIX 3.0. Logiciel d'analyse de données de génétique des populations.. 1999. Belkhir, K.; Borsa, P.; Goudet, J.; CHIKHI, Lounès ; Bonhomme, F..
Activities

Oral presentation

Presentation title Event name
Host (Event location)
2019/11/28 Dados genéticos, espécies ameaçadas e evolução humana Dia Aberto do Instituto Gulbenkian de Ciência
Instituto Gulbenkian de Ciência (Oeiras, Portugal)
2019/07/29 Genomics, population structure and fragmentation: importance for mouse lemurs and other endangered species Mouse Lemur Workshop
University of Antananarivo (Madagascar)
2019/07/10 Genetic data to reconstruct the recent evolutionary past of species FCT Ciência 2019
(Lisboa, Portugal)
2019/07/03 Genética e historia evolutiva humana (based on a true story)
Laboratório de Arqueociências (Lisboa, Portugal)
2019/06/11 On the importance of inferring structure and on the recent evolutionary history of species
Institute For Advanced Study in Toulouse (Toulouse, France)
2019/05/02 Genética de Populações e da Conservação
Escola Secundária Fernando Namora (Lisboa, Portugal)
2019/04/30 Population structure, the IICR and the recent evolutionary history of species Evolution Club
Instituto Gulbenkian de Ciência (Oeiras, Portugal)
2019/03/27 Genética de Populações e da Conservação
Escola Secundária de Miraflores (Lisboa, Portugal)
2019/03/20 Population structure, the IICR and the recent evolutionary history of species INFRAGECO meeting
(Hanover, Germany)
2019/02/26 On the importance of inferring structure and on the recent evolutionary history of species
Instituto Gulbenkian de Ciência (Oeiras, Portugal)
2019/02/08 The IICR (inverse instantaneous coalescence rate) as a summary of genomic diversity: insights into demographic inference and model choice
McGill University (Montréal, Canada)
2019/02/07 Des génomes à remonter le temps
Coeur des Sciences, Université du Québec à Montréal (Montréal, Canada)
2019/02/07 Génétique des populations et histoire démographique
Collège international Marie de France (Montréal, Canada)
2000/05 European human population genetics Human Evolution Meeting
University of Ferrara (Italy)
1997/09 Effects of chemical contaminants on genetic diversity in natural populations VIIème International Conference on Environmental Mutagens
(France)

Supervision

Thesis Title
Role
Degree Subject (Type)
Institution / Organization
2016 - Current Habitat loss and fragmentation: effects on genetic diversity and differentiation
Supervisor
Instituto Gulbenkian de Ciência, Portugal
2019 - 2020 Estimation de la présence/absence, de la densité et la distribution de Lepilemur spp dans les fragments de forêts de la partie Nord-est de Madagascar
Co-supervisor
Université de Mahajanga, Madagascar
2018 - 2019 Morphologie, Distribution et Densité de Microcebus arnholdi (Louis et al. 2008) dans les trois sites Andravory, Maladialina et Ambalasoa, dans le Corridor forestier Marojejy-Anjanaharibe-Sud-Tsaratanana (COMATSA), au Nord-Est de Madagascar
Co-supervisor
Université de Mahajanga, Madagascar
2018 - 2019 Estimation de la densité et variabilité morphologique de Microcebus spp dans le corridor forestier de COMATSA et les fragments forestiers voisins
Co-supervisor
Université de Mahajanga, Madagascar
2016 - 2017 Distribution et Abondance des Populations de Microcebus spp dans les Forêts d'Ampiho, d'Orangia et de Montagne d'Ambre, Nord Madagascar
Co-supervisor
Université de Mahajanga, Madagascar
2008 - 2016 Patterns of genetic diversity in socially structured populations: an individual-based approach
Supervisor
Instituto Gulbenkian de Ciência, Portugal
2010/11 - 2015/12 Comparative conservation genetics of several threatened lemur species living in fragmented environments. A glimpse through natural history of northern Madagascar lemurs
Supervisor
Instituto Gulbenkian de Ciência, Portugal
2014 - 2015 Estimation de la densité, diversité morphologique et identification du dortoir chez Lepilemur ankaranensis (Rumpler et Albignac 1975) dans le PN Ankarana, RS Analamerana et au fragment forestier d’Ankarongana au Nord de Madagascar
Co-supervisor
Université de Mahajanga, Madagascar
2013 - 2014 Présence, répartition, estimation de densité et diversité morphologique des populations du genre Lepilemur dans des fragments forestiers des régions du Nord de Madagascar (Ankarana, Andrafiamena et Andavakoera)
Co-supervisor
Université de Mahajanga, Madagascar
2012 - 2013 Etude de la diversité morphologique et estimation de la densité chez Microcebus tavaratra (Rasoloarison et al., 2000) dans la région Loky-Manambato
Co-supervisor
2012 - 2013 Contribution à l'Etude sur l’estimation de la Densité et les Niveaux des Strates Utilisées chez Propithecus coronatus (Edwards, 1871) dans la Partie Ouest de Madagascar
Co-supervisor
Université de Mahajanga, Madagascar
2011 - 2012 Application des différent méthodes d’estimation de densité, diversité morphologique et caractéristiques du dortoir de populations chez Lepilemur milanoii (Louis et al., 2006) dans les fragments agments forestiers de la Loky-Manambato Loky au Nord de Madagascar
Co-supervisor
Université de Mahajanga, Madagascar
2011 - 2012 Impacts des différents facteurs (naturels et anthropiques) sur la diversité morphologique et estimation de la densité des populations de Microcebus sp. (E. Geoffroy, 1828) et Lepilemur sp. (E. Geoffroy, 1851) du Nord de Madagascar
Co-supervisor
Université de Mahajanga, Madagascar
2006/01 - 2010/04 Inference of admixture and population size changes in structured populations with applications to conservation genetics
Supervisor
2009 - 2010 Distribution spatiale des ressources alimentaires chez Propithecus tattersalli (SIMONS, 1988) , P. coquereli (GRANDIDIER, 1867) et P. coronatus (MILNE – EDWARDS, 1871) ainsi que certains aspects de sa distribution
Co-supervisor
Université de Mahajanga, Madagascar
2009 - 2010 Estimation de la densité de Propithecus Tattersalli (Simons, 1988) au Nord-Est, de Propithecus Coquereli (Grandidier, 1867) et Propithecus Coronatus (Edwards, 1871) au Nord-Ouest de Madagascar
Co-supervisor
Université de Mahajanga, Madagascar

Event organisation

Event name
Type of event (Role)
Institution / Organization
2006 - Current Workshop on the Coalescent Theory (2006)
Workshop (Co-organisor)
Instituto Gulbenkian de Ciência, Portugal
2019/07/29 - 2019/08/03 Symposium in conference - The challenges of connectivity in a fragmented world: insights from Malagasy forests (ATBC2019, Antananarivo, Madagascar) (2019/07/29 - 2019/08/03)
Symposium (Co-organisor)
2019/06/20 - 2019/06/21 Open conference - On models and modelling in biology: from ecology and evolution to epidemiology and gene networks (2019/06/20 - 2019/06/21)
Conference
INSA Toulouse, France
2003 - 2019 5-day course in Population Genetics and Demographic History (The Gulbenkian Training Programme in Bioinformatics) (2003 - 2019)
Workshop (Co-organisor)
Instituto Gulbenkian de Ciência, Portugal

Association member

Society Organization name Role
2012 - Current Associação Portuguesa de Biologia Evolutiva (APBE)

Course / Discipline taught

Academic session Degree Subject (Type) Institution / Organization
2019/05/20 - 2019/05/24 Demography and Approximate Bayesian Simulation Universidade do Porto Centro de Investigação em Biodiversidade e Recursos Genéticos, Portugal
2005 - 2017 Population Genetics (Doutoramento) Instituto Gulbenkian de Ciência, Portugal
2003 - 2017 Population and Conservation Genetics (Master) Université Toulouse III Paul Sabatier, France

Evaluation committee

Activity description
Role
Institution / Organization Funding entity
2005 - 2005 Member of the VolkswagenStifung Jury 2005 VolkswagenStiftung, Germany

Journal scientific committee

Journal title (ISSN) Publisher
2016 - Current Heredity (0018-067X) Springer Science and Business Media LLC
2000 - 2010 Molecular Ecology (1365-294X) Wiley (Blackwell Publishing)
1998 - 1998 Italian Journal of Zoology (1748-5851) Informa UK (Taylor & Francis)
Distinctions

Award

2006 "One of the promising French scientists" by the Journal Marianne
Journal Marianne, France
1998 Gabriel Lasker Prize for the best article published in "Human Biology"
1996 Marie Currie Fellow 1996-1997
1994 Christiane Doré Prize for "the best scientific contribution of an ORSTOM student"

Other distinction

2009 "Special Issue of Human Biology" on Gabriel Lasker Prize Holders