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Inês is a Researcher in Plant Biochemistry area. She is studying the ability of plants to adapt and resist and she wants to unveil the molecular processes behind this. She is working in the genome of cork oak tree, and in the plant microorganism interactions. To her the thematic of data sharing and knowledge exchange has become more and more important and so she is working in the development of the National and European Bioinformatics Infrastructure envisioning the open data and science. Moreover, she is collaborating in the development of controlled vocabulary (e.g. Crop Ontology) and standards (MIAPPE). Concluiu o(a) Doutoramento em Bioquímica em 2006 pelo(a) Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica. No seu currículo Ciência Vitae os termos mais frequentes na contextualização da produção científica, tecnológica e artístico-cultural são: cork oak; transcriptome; bud development; gene expression; 2-DE; Antibody production; Coffee leaf rust (CLR); Cytology; ELISA assay; MALDI-TOF/TOF MS; Plant Science; Quercus suber; Carbohydrate metabolism; Fruit; Seed; Transcriptomics; Transcription factor; Transcriptional regulators; Response to water; Statistics and Probability; Information Systems; Education; Computer Science Applications; Statistics, Probability and Uncertainty; Library and Information Sciences; PHYTOPHTHORA-CINNAMOMI; PROTEIN; GENOME; ILEX; PORTUGAL; INTERPRO; DISEASE; MARKERS; PLANTS; TOOL; .
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Identification

Personal identification

Full name
Inês Chaves

Citation names

  • Chaves, Inês

Author identifiers

Ciência ID
6B1C-FBBB-012D
ORCID iD
0000-0001-7569-3495

Email addresses

  • ichaves@itqb.unl.pt (Professional)

Knowledge fields

  • Natural sciences - Biological Sciences - Biochemistry
  • Exact Sciences - Computer and Information Sciences - Bioinformatics
  • Agrarian Sciences - Agrarian and Food Biotechnology

Languages

Language Speaking Reading Writing Listening Peer-review
Portuguese (Mother tongue)
English Advanced (C1) Advanced (C1) Advanced (C1) Advanced (C1) Upper intermediate (B2)
French Elementary (A2) Elementary (A2) Beginner (A1) Intermediate (B1)
Education
Degree Classification
2010/01/01 - 2012/11/30
Concluded
 Identification of small RNA transcriptomes of Quercus suber cork tissue (Pós-doutoramento)
Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal
2006/08/01 - 2009/05/30
Concluded
 Metabolomic and transcriptomic analysis of phenylpropanoid metabolism during water deficit and high temperature in Quercus suber (Pós-doutoramento)
Major in bioquímica vegetal
Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal
1999/09/01 - 2006/06/15
Concluded
 Bioquímica (Doutoramento)
Major in Especialidade: Bioquímica
Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal
"Protein Expression in Plant Cells During Programmed Cell Death Induced by Stress" (THESIS/DISSERTATION)
 aprovado
1992/09/06 - 1998/12/06
Concluded
 Bioquímica (Licenciatura)
Universidade de Lisboa Faculdade de Ciências, Portugal
"Metalo-proteins of Bacillus thermosphaericus - Purification and Characterization" (THESIS/DISSERTATION)
 15
Affiliation

Science

Category
Host institution 		Employer
2018/06/01 - 2023/09/30 Contracted Researcher (Research) Instituto de Biologia Experimental e Tecnológica, Portugal
Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal
2017 - 2018 Postdoc (Research) Instituto de Biologia Experimental e Tecnológica, Portugal
Instituto de Biologia Experimental e Tecnológica, Portugal
2015 - 2016 Researcher (Research) BioResources 4 Sustainability, Portugal
Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal
2013 - 2014 Postdoc (Research) Instituto de Engenharia de Sistemas e Computadores Investigação e Desenvolvimento em Lisboa, Portugal
Instituto de Engenharia de Sistemas e Computadores Investigação e Desenvolvimento em Lisboa, Portugal

Teaching in Higher Education

Category
Host institution 		Employer
2001 - 2002 Invited Assistant (University Teacher) Instituto Piaget, Portugal

Positions / Appointments

Category
Host institution 		Employer
2023/10/01 - Current Diretor Executivo BioData.pt, Portugal

Others

Category
Host institution 		Employer
2019/01/01 - Current Investigador Convidado Universidade de Lisboa Instituto de Biossistemas e Ciências Integrativas, Portugal
2019/01/01 - Current Investigador convidado Centro de Investigação das Ferrugens do Cafeeiro, Portugal
2018/06/01 - Current Investigador Convidado Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal
Projects

Grant

Designation Funders
2012/03 - 2018/09 An integrated approach to identify stress-related regulatory genes in cork oak (SuberStress)
Provided by PTCRIS: 118505
Post-doc
Fundação para a Ciência e a Tecnologia
2013/07 - 2016/06 Large-Scale Data Management in Cloud Environments
Provided by PTCRIS: 127044
Post-doc Fellow
Fundação para a Ciência e a Tecnologia
2012/03 - 2016/01 Population genomics of virulence adaptation in coffee leaf rust (Hemileia vastatrix)
Provided by PTCRIS: 119943
Post-doc
Fundação para a Ciência e a Tecnologia
2011/04 - 2014/12 Search for candidate protein biomarkers of Coffea arabica resistance to Hemileia vastatrix (leaf rust)
Provided by PTCRIS: 109990
Post-doc
Fundação para a Ciência e a Tecnologia
2010/04 - 2013/09 Gene Regulatory Networks Underlying Phellogen Activity
Provided by PTCRIS: 98369
Post-doc
Fundação para a Ciência e a Tecnologia
2009/10 - 2010/12 Cork oak ESTs consortium - Abiotic stress: Heat and cold stresses
Provided by PTCRIS: 109254
Post-doc
Fundação para a Ciência e a Tecnologia

Contract

Designation Funders
2021/06/01 - Current Increasing Plant data findability and reuse beyond ELIXIR
Increasing Plant data findability and reuse beyond ELIXIR
Principal investigator
Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal
 ELIXIR Hub
Ongoing
2020/09/01 - Current TRACE-RICE: Tracing rice and valorizing side streams along Mediterranean blockchain
1934
Post-doc
Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal
 Partnership for Research and Innovation in the Mediterranean Area
Ongoing
2020/01/01 - Current Bringing the ELIXIR plant data infrastructure to the Portuguese pulp and paper industry
xxxxx
Post-doc
Instituto de Biologia Experimental e Tecnológica, Portugal

Instituto de Engenharia de Sistemas e Computadores Investigação e Desenvolvimento em Lisboa, Portugal

RAIZ Instituto de Investigação da Floresta e Papel, Portugal
ELIXIR Hub
Ongoing
2020/01/01 - Current Strategic Implementation Study Exploiting Bioschemas Markup to Support ELIXIR communities
xxxxx
Post-doc
Instituto de Biologia Experimental e Tecnológica, Portugal

Instituto de Engenharia de Sistemas e Computadores Investigação e Desenvolvimento em Lisboa, Portugal
ELIXIR Hub
Ongoing
2018 - Current Portuguese Biological Data Network
01/SAICT/2016
Post-doc
Instituto de Biologia Experimental e Tecnológica, Portugal

Instituto Gulbenkian de Ciência, Portugal

Instituto de Engenharia de Sistemas e Computadores Investigação e Desenvolvimento em Lisboa, Portugal
Fundação para a Ciência e a Tecnologia
Ongoing
2013/12/01 - Current ELIXIR - Data for Life  European Life Sciences Infrastructure for Biological Information
info:eu-repo/grantAgreement/AKA/271642/FI
Post-doc
Ongoing
2017/01/01 - 2019/12/31 Excelerate - ELIXIR Project
H2020-INFRADEV-1-2015-1
Post-doc
Instituto de Biologia Experimental e Tecnológica, Portugal

Instituto Gulbenkian de Ciência, Portugal

Instituto de Engenharia de Sistemas e Computadores Investigação e Desenvolvimento em Lisboa, Portugal
Concluded
2012 - 2017 GenoSuber - Sequencing Cork Oak genome
CBL2015_05
Post-doc
Centro de Biotecnologia Agrícola e Agro-Alimentar do Alentejo, Portugal
 Agência de Desenvolvimento Regional do Alentejo
Concluded
2016/09/01 - 2016/10/15 SelectPinea : Development of genetic markers methodology for selected traits of interest in Pinus pinea
ALT20-03-0145-FEDER-000041
Principal investigator
Centro de Biotecnologia Agrícola e Agro-Alimentar do Alentejo, Portugal
 CCDR-A
Concluded
Outputs

Publications

Book chapter
  1. Costa, Bruno Vasques; Chaves, Inês. "Strategies and Resources for the Identification of microRNAs in Non-model Plants". In Plant microRNAs - Shaping Development and Environmental Responses, edited by Miguel, Célia M.; Dalmay, Tamas; Chaves, Inês, 45-55. Cham, Switzerland: Springer-Nature, 2020.
    Published
Conference abstract
  1. Chaves, I.; Lin, Y.-C.; Pinto-Ricardo, C.; Van de Peer, Y.; Miguel, C.. "miRNA profiling in leaf and cork tissues of Quercus suber reveals novel miRNAs and tissue-specific expression patterns". 2014.
    10.1007/s11295-014-0717-1
Conference paper
  1. Demirci, H.; Dias, Oscar; Chaves, Inês; Miguel, Célia; Rocha, Miguel; Rocha, I.. "The metabolic model of the Quercus suber (cork oak tree) leaf". 2019.
  2. Chaves, Inês. "Identification of miRNAs as Mediators of Coffea arabica Resistance to Hemileia vastatrix". 2017.
    10.6084/m9.figshare.4970351.v1
Conference poster
  1. Chaves, Inês. "sRNAworkflow: A pipeline for for analysis of large-scale plant small RNA datasets". 2016.
    10.6084/m9.figshare.3122569.v1
Edited book
  1. Chaves, Inês. Plant microRNAs Shaping Development and Environmental Responses: Shaping Development and Environmental Responses. Cham: Springer International Publishing. 2020.
    Published • 10.1007/978-3-030-35772-6 • Editor
Journal article
  1. Lopes, Susana T.; Costa, Bruno; Chaves, Inês; Costa, Augusta; Miguel, Célia M.. Corresponding author: Miguel, Célia M.. "Uncovering miRNA-Mediated Regulation in Phellem Versus Xylem Differentiation in Quercus suber L.". Journal of Plant Growth Regulation (2024): http://dx.doi.org/10.1007/s00344-024-11453-1.
    10.1007/s00344-024-11453-1
  2. Cunha, Emanuel Rodrigues; Silva, Miguel; Chaves, Inês; Demirci, Huseyin; Lagoa, Davide Rafael Santos; Lima, Diogo; Rocha, Miguel; Rocha, Isabel; Dias, Oscar. "The first multi-tissue genome-scale metabolic model of a woody plant highlights suberin biosynthesis pathways in Quercus suber". (2023): https://hdl.handle.net/1822/86827.
    10.1371/journal.pcbi.1011499
  3. Usié, Ana; Serra, Octávio; Barros, Pedro M.; Barbosa, Pedro; Leão, Célia; Capote, Tiago; Almeida, Tânia; et al. "An improved reference genome and first organelle genomes of Quercus suber". (2023): http://hdl.handle.net/10451/63447.
    10.1007/s11295-023-01624-8
  4. Pedro Perdiguero; Andreia Santos Rodrigues; Inês Chaves; Bruno Costa; Ana Alves; Nuria María; María Dolores Vélez; et al. "Comprehensive analysis of the isomiRome in the vegetative organs of the conifer Pinus pinaster under contrasting water availability". Plant, Cell & Environment (2021): https://doi.org/10.1111/pce.13976.
    10.1111/pce.13976
  5. Possa, Kátia Ferreira; Silva, Joyce Alves Goulart; Resende, Mário Lúcio Vilela; Tenente, Rita; Pinheiro, Carla; Chaves, Inês; Planchon, Sebastien; et al. "Primary Metabolism Is Distinctly Modulated by Plant Resistance Inducers in Coffea arabica Leaves Infected by Hemileia vastatrix". Frontiers in Plant Science 11 (2020): http://dx.doi.org/10.3389/fpls.2020.00309.
    10.3389/fpls.2020.00309
  6. Papoutsoglou, Evangelia A.; Faria, Daniel; Arend, Daniel; Arnaud, Elizabeth; Athanasiadis, Ioannis N.; Chaves, Inês; Coppens, Frederik; et al. "Enabling reusability of plant phenomic datasets with MIAPPE 1.1". New Phytologist (2020): http://dx.doi.org/10.1111/nph.16544.
    Accepted • 10.1111/nph.16544
  7. Arias-Baldrich, Cirenia; Silva, Marta Contreiras; Bergeretti, Filippo; Chaves, Inês; Miguel, Célia; Saibo, Nelson J M; Sobral, Daniel; Faria, Daniel; Barros, Pedro M. "CorkOakDB—The Cork Oak Genome Database Portal". Database 2020 (2020): http://dx.doi.org/10.1093/database/baaa114.
    10.1093/database/baaa114
  8. Lopes, Susana T; Sobral, Daniel; Costa, Bruno; Perdiguero, Pedro; Chaves, Inês; Costa, Augusta; Miguel, Célia M. "Phellem versus xylem: genome-wide transcriptomic analysis reveals novel regulators of cork formation in cork oak". Tree Physiology 40 2 (2019): 129-141. http://dx.doi.org/10.1093/treephys/tpz118.
    10.1093/treephys/tpz118
  9. Rodrigues, Ana Margarida; Miguel, Célia; Chaves, Inês; António, Carla. "Mass spectrometry-based forest tree metabolomics". Mass Spectrometry Reviews (2019): http://dx.doi.org/10.1002/mas.21603.
    Published • 10.1002/mas.21603
  10. Rodrigues, Andreia S.; Chaves, Inês; Costa, Bruno Vasques; Lin, Yao-Cheng; Lopes, Susana; Milhinhos, Ana; Van de Peer, Yves; Miguel, Célia M.. "Small RNA profiling in Pinus pinaster reveals the transcriptome of developing seeds and highlights differences between zygotic and somatic embryos". Scientific Reports 9 1 (2019): http://dx.doi.org/10.1038/s41598-019-47789-y.
    Published • 10.1038/s41598-019-47789-y
  11. Ramos, António Marcos; Usié, Ana; Barbosa, Pedro; Barros, Pedro M.; Capote, Tiago; Chaves, Inês; Simões, Fernanda; et al. "The draft genome sequence of cork oak". Scientific Data 5 1 (2018): http://dx.doi.org/10.1038/sdata.2018.69.
    10.1038/sdata.2018.69
  12. Meireles, B.; Usié, A.; Barbosa, P.; Fortes, A.M.; Folgado, A.; Chaves, I.; Carrasquinho, I.; et al. "Characterization of the cork formation and production transcriptome in Quercus cerris × suber hybrids". Physiology and Molecular Biology of Plants 24 4 (2018): 535-549. http://www.scopus.com/inward/record.url?eid=2-s2.0-85049758970&partnerID=MN8TOARS.
    10.1007/s12298-018-0526-3
  13. Usié, Ana; Simões, Fernanda; Barbosa, Pedro; Meireles, Brígida; Chaves, Inês; Gonçalves, Sónia; Folgado, André; et al. "Comprehensive Analysis of the Cork Oak (Quercus suber) Transcriptome Involved in the Regulation of Bud Sprouting". Forests 8 12 (2017): 486. http://dx.doi.org/10.3390/f8120486.
    10.3390/f8120486
  14. Chaves, I.; Costa, B.V.; Rodrigues, A.S.; Bohn, A.; Miguel, C.M.. "miRPursuit: pipeline for automated analyses of small RNAs in model and nonmodel plants". FEBS Letters 591 15 (2017): 2261-2268. http://www.scopus.com/inward/record.url?eid=2-s2.0-85026297551&partnerID=MN8TOARS.
    10.1002/1873-3468.12746
  15. Usié, Ana; Simões, Fernanda; Barbosa, Pedro; Meireles, Brígida; Chaves, Inês; Gonçalves, Sónia; Folgado, André; et al. "Comprehensive analysis of the cork oak (Quercus suber) transcriptome involved in the regulation of bud sprouting". Cork oaks show a high capacity of bud sprouting as a response to injury, which is important for species survival when dealing with external factors, such as drought or fires. The characterization of the cork oak transcriptome involved in the different stages of bud sprouting is essential to understanding the mechanisms involved in these processes. In this study, the transcriptional profile of diff 8 12 (2017): http://hdl.handle.net/10400.5/14613.
    Published • 10.3390/f8120486
  16. Chaves, Inês. "Protein Dynamics in the Plant Extracellular Space". Proteomes (2016): http://dx.doi.org/10.3390/proteomes4030022.
    10.3390/proteomes4030022
  17. Chaves, Inês. "Proteomic analysis of apoplastic fluid of Coffea arabica leaves highlights novel biomarkers for resistance against Hemileia vastatrix". Frontiers in Plant Science (2015): http://dx.doi.org/10.3389/fpls.2015.00478.
    10.3389/fpls.2015.00478
  18. Miguel, A.; de Vega-Bartol, J.; Marum, L.; Chaves, I.; Santo, T.; Leitão, J.; Varela, M.C.; et al. "Characterization of the cork oak transcriptome dynamics during acorn development". BMC Plant Biology 15 1 (2015): http://www.scopus.com/inward/record.url?eid=2-s2.0-84933038175&partnerID=MN8TOARS.
    Published • 10.1186/s12870-015-0534-1
  19. Chaves, Inês; Lin, Yao-Cheng; Pinto-Ricardo, C.; Van de Peer, Yves; Miguel, Célia. "Novel and conserved miRNAs in Quercus suber as potential regulatory elements during cork formation". Tree Genetics & Genomes 10 3 (2014): 721-737. http://dx.doi.org/10.1007/s11295-014-0717-1.
    Published • 10.1007/s11295-014-0717-1
  20. Guerra-Guimarães, L.; Vieira, A.; Chaves, I.; Pinheiro, C.; Queiroz, V.; Renaut, J.; Ricardo, C.P.. "Effect of greenhouse conditions on the leaf apoplastic proteome of Coffea arabica plants". Journal of Proteomics 104 (2014): 128-139. http://www.scopus.com/inward/record.url?eid=2-s2.0-84901621496&partnerID=MN8TOARS.
    10.1016/j.jprot.2014.03.024
  21. Chaves, I.; Passarinho, J.A.P.; Capitão, C.; Chaves, M.M.; Fevereiro, P.; Ricardo, C.P.P.. "Temperature stress effects in Quercus suber leaf metabolism". Journal of Plant Physiology 168 15 (2011): 1729-1734. http://www.scopus.com/inward/record.url?eid=2-s2.0-79961129014&partnerID=MN8TOARS.
    10.1016/j.jplph.2011.05.013
  22. Chaves, I.; Alves, M.; Carrilho, D.; Duque-Magalhães, M.C.; Ricardo, C.P.; Regalado, A.P.. "Protein changes during programmed cell death in tobacco". Biologia Plantarum 55 1 (2011): 153-158. http://www.scopus.com/inward/record.url?eid=2-s2.0-79251580275&partnerID=MN8TOARS.
    Published • 10.1007/s10535-011-0021-y
  23. Alves, M.; Chaves, I.; Carrilho, D.; Veloso, M.; Ricardo, C.P.. "Detection of novel trypsin inhibitors in the cotyledons of Phaseolus vulgaris seeds". Journal of Plant Physiology 167 10 (2010): 848-854. http://www.scopus.com/inward/record.url?eid=2-s2.0-77953323891&partnerID=MN8TOARS.
    Published • 10.1016/j.jplph.2010.01.007
  24. Chaves, I.; Pinheiro, C.; Paiva, J.A.P.; Planchon, S.; Sergeant, K.; Renaut, J.; Graça, J.A.; et al. "Proteomic evaluation of wound-healing processes in potato (Solanum tuberosum L.) tuber tissue". Proteomics 9 17 (2009): 4154-4175. http://www.scopus.com/inward/record.url?eid=2-s2.0-69949110850&partnerID=MN8TOARS.
    Published • 10.1002/pmic.200700649
  25. Chaves, I.; Regalado, A.P.; Chen, M.; Ricardo, C.P.; Showalter, A.M.. "Programmed cell death induced by (ß-D-galactosyl)3 Yariv reagent in Nicotiana tabacum BY-2 suspension-cultured cells". Physiologia Plantarum 116 4 (2002): 548-553. http://www.scopus.com/inward/record.url?eid=2-s2.0-0036895726&partnerID=MN8TOARS.
    Published • 10.1034/j.1399-3054.2002.1160414.x
  26. Regalado, A.P.; Pinheiro, C.; Vidal, S.; Chaves, I.; Ricardo, C.P.P.; Rodrigues-Pousada, C.. "The Lupinus albus class-III chitinase gene, IF3, is constitutively expressed in vegetative organs and developing seeds". Planta 210 4 (2000): 543-550. http://www.scopus.com/inward/record.url?eid=2-s2.0-0034072479&partnerID=MN8TOARS.
    Published
Online resource
  1. Chaves, Inês; celia michotey. Woody Plant Ontology. 2018. http://www.cropontology.org/rdf/CO_357.
Report
  1. Luisa Schmidt; João Santos Pereira; Eugenio Sequeira; Chaves, Inês. 2005. Parecer sobre os "Organismos Geneticamente Modificados". http://www.cnads.pt/index.php?option=com_docman&task=doc_download&gid=286&Itemid=84.
Website
  1. Chaves, Inês. CorkOakDB. 2020. https://corkoakdb.org.
Working paper
  1. Pommier, Cyril; Gruden, Kristina; junkers, astrid; Frederik Coppens; richard finkers; Keywan Hassani-Pak; Daniel Faria; et al. 2021. "ELIXIR Plant sciences 2020-2023 Roadmap [version 1; not peer reviewed]. F1000Research 2021, 10(ELIXIR):145". https://doi.org/10.7490/f1000research.1118482.1.

Other

Other output
  1. iEC7871 Quercus suber model: the first multi-tissue diel cycle genome-scale metabolic model of a woody tree. 2021. Emanuel Cunha; Miguel Silva; Ines Chaves; Huseyin Demirci; Davide Lagoa; Diogo Lima; Miguel Rocha; Isabel Rocha; Oscar Dias. https://doi.org/10.1101/2021.03.09.434537.
    10.1101/2021.03.09.434537
  2. A comprehensive assessment of the transcriptome of cork oak (Quercus suber) through EST sequencing. Background: Cork oak (Quercus suber) is one of the rare trees with the ability to produce cork, a material widely used to make wine bottle stoppers, flooring and insulation materials, among many other uses. The molecular mechanisms of cork formation are still poorly understood, in great part due to the difficulty in studying a species with a long life-cycle and for which there is scarce molecular/. 2014. Pereira-Leal, Jose B.; Abreu, Isabel A.; Alabca, Claudia S.; Almeida, Maria Helena; Almeida, Paulo; Almeida, Tania; Amorim, Maria Isabel; et al. http://hdl.handle.net/10773/20246.
    10.1186/1471-2164-15-371
Activities

Oral presentation

Presentation title Event name
Host (Event location)
2019/02/20 Stakeholder Directed Presentation: Storage of plant biological information for breeding in digital era - Definition of standards and ontologies O vinho e a vinha: desafios para a Bioinformática
Universidade do Minho (Braga, Portugal)
2018/09/06 Transcriptional identification and characterization of differentially expressed miRNAs involved in conifer embryogenesis IUFRO Working Party 2.09.02 - Clonal trees in the bio-economy age: opportunities and challenges
Universidade de Coimbra, Departamento de Ciências da Vida (Coimbra, Portugal)
2017/11/15 Stakeholder Directed Presentation: Genetic improvement in Pinus pinaster Industry, Producers and R&D in Pine
Centro PINUS, Universidade Católica do Porto (Porto, Portugal)

Supervision

Thesis Title
Role 		Degree Subject (Type)
Institution / Organization
2014 - 2020 Molecular regulation of Pinus pinaster embryo development: insights from the coding and non-coding transcriptomes
Co-supervisor
 PhD in Molecular Biosciences (PhD)
Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal
2019 - 2019 Phylogenetic analysis of 14-3-3 genes in Quercus suber
Supervisor
Instituto de Biologia Experimental e Tecnológica, Portugal
2014 - 2019 Bioinformatics analysis of microRNAs in plant
Supervisor
Instituto de Biologia Experimental e Tecnológica, Portugal
2016 - 2017 Proteomic analysis of wood formation
Co-supervisor
Instituto de Biologia Experimental e Tecnológica, Portugal
2015 - 2015 Linked Data in the Woody Plants Domain (2015)
Co-supervisor
 Engenharia Informática e de Computadores (Master)
Instituto de Engenharia de Sistemas e Computadores Investigação e Desenvolvimento em Lisboa, Portugal

Universidade de Lisboa Instituto Superior Técnico, Portugal
2013 - 2013 MiRNAs in Plant Embryogenis
Co-supervisor
 Biotecnologia (Engenharia Bioquímica) (Scientific initiation)
Universidade de Lisboa Instituto Superior Técnico, Portugal
2011 - 2011 Young Graduate Trainee Lic. (supervisor @ ITQB-NOVA) RNA Isolation for Plant Recalcitrant tissues (2011)
Supervisor
Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal

Event organisation

Event name
Type of event (Role) 		Institution / Organization
2019 - Current Workshop on Plant Phenotyping-Genotyping Data Management (2019/11/12 - 2019/11/12)
Workshop (President of the Organising Committee)
 Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal
2019 - 2019 Plants Fascination Day 2019 (ITQB NOVA and IBET) Palácio do Marquês de Pombal, Oeiras, Portugal (2019/05/18 - 2019/05/18)
Other (President of the Organising Committee)
 Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal

Instituto de Biologia Experimental e Tecnológica, Portugal
2016/03/29 - 2017/03/29 EMPHASIS Workshop (2017/03/29 - 2017/03/29)
Workshop
 Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal
2016/03/27 - 2017/03/28 3rd General COST Meeting "Field phenotyping technologies from woody perennials to annual crops", EU COST action ‘The quest for tolerant varieties: phenotyping at plant and cellular level (FA1306)' 27 - 28 March 2017, Oeiras, Portugal (2017/03/27 - 2027/03/28)
Meeting (Member of the Organising Committee)
2017 - 2017 Post-Doc ITQB/IBET/CEDOC/IMM retreat 2017, Cascais, Portugal (2017/11/22 - 2017/11/23)
Meeting (Member of the Organising Committee)
 Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal

Instituto de Biologia Experimental e Tecnológica, Portugal

Universidade Nova de Lisboa Centro de Estudos de Doenças Crónicas, Portugal

Instituto de Medicina Molecular João Lobo Antunes, Portugal
2017 - 2017 Job Fair: Career Opportunities for Post-Doctoral Researchers in Life Sciences, 23-24 November 2017, Cascais, Portugal (2017/11/23 - 2017/11/24)
Other (Member of the Organising Committee)
 Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal

Instituto de Biologia Experimental e Tecnológica, Portugal

Universidade Nova de Lisboa Centro de Estudos de Doenças Crónicas, Portugal

Instituto de Medicina Molecular João Lobo Antunes, Portugal
2016 - 2017 3rd General COST Meeting "Field phenotyping technologies from woody perennials to annual crops", EU COST action ‘The quest for tolerant varieties: phenotyping at plant and cellular level (FA1306)' 27 - 28 March 2017, Oeiras, Portugal (2017/03/27 - 2017/03/28)
Meeting (Member of the Scientific Committee)

Event participation

Activity description
Type of event 		Event name
Institution / Organization
2019 - 2019 Seminar “Why Is Important to Share Data? How to Do It”
Other
 ITQB International PhD Program in Plant Sciences
Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal
2018 - 2018 Seminar “The importance of oversharing in science”
Seminar
 ITQB International PhD Program in Plant Sciences
Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal
2017 - 2017 Tutorial on “FAIR data”
Workshop
 ITQB International PhD Program in Plant Sciences
Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal
2012 - 2012 Open Lecture “Dá-me o teu DNA lixo e Dir-te-ei como és - O papel dos miRNAs nas plantas”,
Symposium
 Fisiologia Molecular do Stress, Plant Biology graduation
Fundação da Faculdade de Ciências da Universidade de Lisboa, Portugal
2011 - 2011 Open Lecture in Plant Biology "A Proteomic View of a Cellular Suicide Plan" , Faculdade de Ciências da Universidade de Lisboa.
Symposium
 Disciplina Fisiologia Molecular do Stress
Universidade de Lisboa Faculdade de Ciências, Portugal
2009 - 2009 Lecture "Biochemistry of Cork Formation as a Stress Response"
Workshop
 EMBO Practical Course / Gulbenkian Biology Course on Plant Development
Instituto Gulbenkian de Ciência, Portugal

Jury of academic degree

Topic
Role 		Candidate name (Type of degree)
Institution / Organization
2018 Biomarcadores Proteicos de Resistência do Cafeeiro À Ferrugem: Validação de Anticorpos Candidatos
(Thesis) Main arguer
 Sofia Claudino Duarte (Other)
Universidade Nova de Lisboa Faculdade de Ciências e Tecnologia, Portugal
2017/11/17 Identification and real time PCR expression analysis of drought-related lipid metabolism genes in soybeanMestrado em Biologia Molecular e Genética
(Thesis) Main arguer
 Daniela Alves Jardim Sardinha Ferreira (Master)
Universidade de Lisboa Faculdade de Ciências, Portugal

Association member

Society Organization name Role
2000 - Current Sociedade Portugues da Biologia Vegetal associado
2000 - Current Sociedade Portuguesa de Bioquímica Associado

Committee member

Activity description
Role 		Institution / Organization
2018 - Current EMPHASIS supporting group
Member
 Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal

Instituto de Biologia Experimental e Tecnológica, Portugal
2019 - 2019 Elected member of the Post-Doc Association Executive Committee at ITQB NOVA and IBET
Other
 Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal

Instituto de Biologia Experimental e Tecnológica, Portugal
2018 - 2018 Elected member of the Post-Doc Association Executive Committee at ITQB NOVA and IBET
Coordinator
 Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal

Instituto de Biologia Experimental e Tecnológica, Portugal
2012 - 2014 Parent Association Executive Committee at Elementary School (EB1 António Rebelo de Andrade)
Coordinator

Conference scientific committee

Conference name Conference host
2021/01/15 - 2021/05/13 2nd Cool Tools for Science Universidade de Lisboa Instituto Superior Tecnico

Consulting

Activity description Institution / Organization
2005 - 2005 Parecer sobre os "Organismos Geneticamente Modificados" Conselho Nacional do Ambiente e do Desenvolvimento Sustentável , Portugal

Course / Discipline taught

Academic session Degree Subject (Type) Institution / Organization
2001/01/05 - 2001/06/06 Biochemistry (40 h) Educação Física e Desporto (Licenciatura) Instituto Piaget de Almada, Portugal
2001/01/04 - 2001/06/06 Lab Techniques (36 h) QUIMICA (Licenciatura) Escola Superior de Educação Jean Piaget de Almada, Portugal

Journal scientific committee

Journal title (ISSN) Publisher
2020/10/15 - Current BMC Plant Biology (1471-2229) SpringerNature
2020 - Current Revista de Ciências Agrárias (Editora Associada) SciELO Portugal
2006 - Current Journal of Plant Physiology (0176-1617) Elsevier
2006 - Current Tree Genetics & Genomes (1614-2950) Springer-Verlag
2006 - Current Journal of Plant Biotechnology (2384-1397) The Korean Society for Plant Biotechnology