Book |
- Sousa, JC; Machado, E; Novais, Carla; Peixe, L; Amorim, JM; Monteiro, N. Antibióticos - Volume I. Portugal. 2016.
Published
|
Book chapter |
- Antunes, P; Novais, Carla; Peixe, Luísa. "Food-to-Humans Bacterial Transmission". In Microbial Transmission, edited
by American Society of Microbiology. ASM Press, 2019.
Published • 10.1128/9781555819743
- Freitas, Ana R.; Novais, Carla; Peixe, Luísa; Coque, Teresa M.; Freitas, AR; Novais, Carla; Peixe, L; Coque, TM. "Isolation
and Visualization of Plasmids from Gram-Positive Bacteria of Interest in Public Health". In Methods in Molecular Biology,
21-38. Springer US, 2019.
10.1007/978-1-4939-9877-7_2
- Luís Meirinho-Soares; Peixe, L. "Fundamentos de Microbiologia. Esterilização, desinfeção e antissepsia.". In MICROBIOLOGIA
MÉDICA, 83-89. Portugal: LIDEL, 2014.
Published
- Coque, TM; Freitas, AR; Novais, Carla; Peixe, L; Baquero, F. "Mobile Genetic Elements and Lateral Genetic Transfer in Enterococci.
In: Enterococcus and Safety". In Advances in Food Safety and Food Microbiology. Brasil: Nova Publishers, 2011.
Published
- João Carlos Figueiredo Sousa; Peixe, Luísa. "Antibióticos anti-bacterianos". In Microbiologia. Portugal: Lidel, Edições
Técnicas, 2010.
Published
- Peixe, L. "Esterilização, antisepsia e desinfecção". In Microbiologia, 221-231. Portugal: Lidel, 1998.
Published
- Maria São José Nascimento; João Carlos Sousa; Maria Isaura Sousa; Miguel Cabral; Eugénia Pinto; Helena Ferreira; Peixe, L.
"Antimicrobianos". In Microbiologia. Portugal: Lidel, 1998.
Published
|
Conference abstract |
- Antunes, Beatriz; Ana C. Almeida-Santos; Read, Antónia; Alves, Valquíria; Novais, Carla; Luísa Maria Vieira Peixe; Ana R.
Freitas. Corresponding author: Antunes, Beatriz. "In-depth characterization of vancomycin-resistant Enterococcus faecium from
hospitalized patients at a Portuguese hospital, 2022-2023". Paper presented in 17.º Encontro de Investigação Jovem da Universidade
do Porto, 2024.
Published
- Ana C. Almeida-Santos; Ana P. Tedim; Bárbara Duarte; Michael Brilhante; Teresa M. Coque; Carla Novais; Ana Raquel Pinho Freitas;
Luísa Maria Vieira Peixe. "Bacteriocin Dynamics in Enterococcus faecium and Enterococcus lactis: Implications for Clinical
and Commensal Strain Interactions". Paper presented in III 1H-TOXRUN INTERNATIONAL CONGRESS 2024, Porto, 2024.
Published
- Ana C. Almeida-Santos; Ana P. Tedim; Duarte, Bárbara; Luís M. Silva; Júlio Teixeira; Ana P. Castro; Carla Novais; Luísa Maria
Vieira Peixe; Ana Raquel Pinho Freitas. "A challenge in antibiotic stewardship: detection of Vancomycin-Variable Enterococcus
faecium (VVE) in human clinical and commensal samples (2009-2022)". Paper presented in III 1H-TOXRUN INTERNATIONAL CONGRESS
2024, Porto, 2024.
Published
- Luís M. Sampaio; Cláudia-Ferreira, Ana; Prata, Joana C.; Rui M.S. Azevedo; Pacheco, Patricia ; Carla Campos; Novais, Carla;
et al. "Nasal colonization by Staphylococcus aureus in Health Sciences students and analysis of risk factors under a One Health
perspective. Scientific Letters. Vol. 1 No. Sup 1 (2023). https://doi.org/10.48797/sl.2023.79". Paper presented in II TOXRUN
International Congress 2023, 2023.
Published
- Ana C. Almeida-Santos; Duarte, Bárbara; Maria J. Teixeira; Ana P. Tedim; Novais, Carla; Luísa Maria Vieira Peixe; Freitas,
Ana R. "Novel insights into healthy humans’ faecal carriage of enterococci: Enterococcus lactis as a dominant highly bacteriocinogenic
species. Scientific Letters: Vol. 1 No. Sup 1 (2023). https://doi.org/10.48797/sl.2023.51". Paper presented in II TOXRUN
International Congress 2023, 2023.
Published
- Ana C. Almeida-Santos; Duarte, Bárbara; Ana P. Tedim; Miguel D. Fernández-de-Bobadilla; Luís M Silva; Helena Ramos; Teresa
M. Coque; et al. "Vancomycin-resistant Enterococcus faecium circulating in a Portuguese hospital (2009-2021) challenges classical
infection control. Scientific Letters. Vol. 1 No. Sup 1 (2023). https://doi.org/10.48797/sl.2023.78". Paper presented in II
TOXRUN International Congress 2023, 2023.
Published
- Ana C. Almeida-Santos; Maria J. Teixeira; Duarte, Bárbara; Novais, Carla; Luísa Maria Vieira Peixe; Freitas, Ana R. "Diferenciação
precisa de Enterococcus faecium e Enterococcus lactis em fezes de humanos saudáveis indica E. lactis como espécie predominante".
Paper presented in Congresso Internacional de Microbiologia em Língua Portuguesa, 2022.
- Mafalda Magalhães; Marisa Ribeiro-Almeida; Andreia Rebelo; Diana Lopes; Sofia Paiva; Luísa Maria Vieira Peixe; Ângela Novais;
Novais, Carla; Antunes, Patrícia. "Da quinta ao prato: diversidade e persistência de Klebsiella pneumoniae em sistemas de
produção intensiva de frango". Paper presented in Microbiologia 2022 ¿ Congresso internacional de microbiologia em língua
Portuguesa, 2022.
Published
- Magalhães, Mafalda; Ribeiro-Almeida, M; Paiva, Sofia; Andreia Rebelo; Luísa Maria Vieira Peixe; Novais, Ângela; Novais, Carla;
Antunes, Patrícia. "Diversity of copper tolerant and antibiotic resistant Klebsiella pneumoniae clones in poultry production
using inorganic or organic copper feed formulations.". Paper presented in 15th Meeting of Younger Researchers of University
of Porto (IJUP 2022), Porto, 2022.
Published
- Teixeira, M. J.; Almeida-Santos, Ana C.; Duarte, B.; Novais, Carla; Dinis-Oliveira, Ricardo Jorge; Peixe, L; Freitas, Ana
R. "Faecal carriage of enterococci by Portuguese healthy humans: preliminary data towards accurate species identification.
RevSALUS - Revista Científica Internacional Da Rede Académica Das Ciências Da Saúde Da Lusofonia, 4(Sup), 125. (doi: https://doi.org/10.51126/revsalus.v4iSup.355)".
Paper presented in I Congresso Internacional da TOXRUN, V Congresso da Associação Portuguesa de Ciências Forenses, XIX
Jornadas Científicas de Ciências do Instituto Universitário de Ciências da Saúde, Porto, 2022.
Published
- Maria J. Teixeira; Ana C. Almeida-Santos; Duarte, Bárbara; Novais, Carla; Dinis-Oliveira, Ricardo Jorge; Luísa Maria Vieira
Peixe; Freitas, Ana R. "Faecal carriage of enterococci by Portuguese healthy humans: preliminary data towards accurate species
identification. RevSALUS - Revista Científica Internacional Da Rede Académica Das Ciências Da Saúde Da Lusofonia". Paper presented
in Congresso Internacional da TOXRUN, V Congresso da Associação Portuguesa de Ciências Forenses, XIX Jornadas Científicas
de Ciências do Instituto Universitário de Ciências da Saúde, 2022.
- Ribeiro-Almeida, M; Monteiro, E; Ribeiro, S; Rebelo, Andreia; Pereira, B; Baptista, C; Peixe, L; Novais, Carla; Antunes, Patrícia.
"Occurrence of colistin resistant and copper tolerant Enterobacteriaceae in 2-year colistin-free chicken farms using feed
formula with inorganic or organic copper". Paper presented in 31st European Congress of Clinical Microbiology & Infectious
Diseases (ECCMID), 2021.
- Andreia Rebelo; Duarte, Bárbara; Carina Baptista; Ribeiro-Almeida, M; Eulália Monteiro; Beatriz Pereira; Ribeiro, Sofia; et
al. "Impact of organic and inorganic copper feed formulation in the selection of copper-tolerant and multidrug-resistant Enterococcus
faecium from poultry farms and meat available to consumers". Paper presented in 31st European Congress of Clinical Microbiology
and Infectious Diseases (ECCMID), Vienna, 2021.
Published
- Ribeiro-Almeida, M; Magalhães, Mafalda; Paiva, Sofia; Andreia Rebelo; Luísa Maria Vieira Peixe; Novais, Carla; Novais, Ângela;
Antunes, Patrícia. "From farm to fork: studying the diversity and persistence of colistin resistant Klebsiella pneumoniae
in colistin-free chicken farms". Paper presented in Congress of Microbiology and Biotechnology (MICROBIOTEC 21 Webconference),
2021.
Published
- Rebelo, Andreia; Duarte, Bárbara; Freitas, Ana R; Callejón, Ana; Peixe, L; Novais, Carla; Antunes, Patrícia. "Activity of
peracetic acid against MDR Enterococcus faecium and non-typhoidal Salmonella from diverse epidemiological and genetic backgrounds".
Paper presented in 30th European Congress of Clinical Microbiology and Infectious Diseases, Paris, 2020.
Published
- Ribeiro-Almeida, M; Joana Freitas da Silva; Ribeiro, Sofia; Perovic, SU; Novais, Ângela; Peixe, L; Martins da Costa, Paulo;
Antunes, Patrícia. "Emergence of mcr-1 among diverse multidrug-resistant Escherichia coli in gulls from a coastal city uncovers
potentially underestimated transmission routes". Paper presented in 30th European Congress of Clinical Microbiology and
Infectious Diseases, Paris, 2020.
Accepted
- Finisterra, L; Novais, Carla; Duarte, Bárbara; Peixe, L; Freitas, Ana R. "Detection of linezolid-resistant enterococci carrying
optrA and/or poxtA in raw-frozen dog foods commercialized in EU: trend or threath? Work selected for a Press Release". Paper
presented in 30th European Congress of Clinical Microbiology and Infectious Diseases (ECCMID), 2020.
- Pereira, Ana Paula; Duarte, Bárbara; Antunes, Patrícia; Peixe, L; Freitas, Ana R; Novais, Carla. "Intact EfrEF operons seem
essential for chlorohexidine tolerance among Enterococcus faecalis from different hosts and genetic backgrounds". Paper presented
in 30th European Congress of Clinical Microbiology and Infectious Diseases (ECCMID), 2020.
Accepted
- Elghaieb, Houyem; Novais, Carla; Duarte, Bárbara; Abbassi, M.S; Peixe, L. "Genomic characterisation of clinical Enterococcus
faecium from Tunisia: remarkable identity with ampicillin-resistant strains obtained from animals/meat in the same area".
Paper presented in 30th European Congress of Clinical Microbiology and Infectious Diseases (ECCMID), 2020.
Accepted
- Perovic, SU; Ksiezarek, M; Rocha, J; Vale, L; Silva, C; Dinis, P; Antunes Lopes, T; Peixe, L. "Time to change microbiological
approach to overactive bladder". Paper presented in 34th Annual EAU Congress, Barcelona, 2019.
Published • DOI: https://doi.org/10.1016/S1569-9056(19)30077-6
- Andreia Rebelo; Mourão, Joana; Freitas, Ana R; Campos, Joana; Luísa Maria Vieira Peixe; Antunes, Patrícia; Novais, Carla.
"Assess of acid tolerance of non-typhoidal Salmonella and Enterococcus faecium from different epidemiological and genetic
backgrounds". Paper presented in Congress of Microbiology and Biotechnology (MICROBIOTEC 2019), Coimbra, 2019.
Published
- Andreia Rebelo; Duarte, Bárbara; Ana Callejón; Luísa Maria Vieira Peixe; Novais, Carla; Antunes, Patrícia. "Peracetic Acid
tolerance of MDR non-typhoidal Salmonella and Enterococcus faecium with diverse epidemiological and genetic background". Paper
presented in Congress of Microbiology and Biotechnology (MICROBIOTEC 2019), Coimbra, 2019.
Published
- Novais, Carla; Freitas, Ana R; Andreia Rebelo; Ferreira, Carolina; Duarte, Bárbara; Ribeiro, Sofia; Mourão, Joana; et al.
"Raw chicken meat is a vehicle of ampicillin-multidrug-resistant Enterococcus faecium: is it a one health problem?". Paper
presented in 1º Simpósio INIAV para a Segurança Alimentar - Rumo à Alimentação do Futuro, Vila do Conde, 2019.
Published
- Antunes, Patrícia; Novais, Carla; Novais, Ângela; Grosso, Filipa; Ribeiro, Teresa G; Mourão, Joana; Perovic, Svetlana; et
al. "Implementation of Micromundo@UPorto: an educacional project based on service-learning promoting antimicrobial resistance
awareness among university and school students". Paper presented in Congress of Microbiology and Biotechnology (MICROBIOTEC
2019), Coimbra, 2019.
Published
- Novais, Carla; Freitas, Ana R; Carina Ferreira; Christopher Scholes; Duarte, Bárbara; Ribeiro, Sofia; Mourão, Joana; et al.
"High rates of ampicillin multidrug-resistant Enterococcus faecium in chicken meat from Portugal". Paper presented in 29th
European Congress of Clinical Microbiology and Infectious Diseases, Amsterdam, 2019.
- Antunes, Patrícia; Novais, Carla; Freitas, Ana R; Ângela Novais; Grosso, Filipa; Ribeiro, Teresa G; Perovic, Svetlana; et
al. "Implementation of MicroMundo@UPorto: a Pedagogical Project of Service-Learning for Education in Microbiology and Antimicrobial
Resistance Awareness". Paper presented in 8th Congress of European Microbiologists - FEMS 2019, Glasgow, 2019.
Published
- Carina Ferreira; Novais, Carla; Freitas, Ana R; Christopher Scholes; Duarte, Bárbara; Ribeiro, Sofia; Mourão, Joana; et al.
"Widespread of ampicillin-multidrug-resistant Enterococcus faecium in raw chicken meat, Portugal". Paper presented in 12th
Meeting of Younger Researchers of University of Porto, Porto, 2019.
Published
- Ribeiro, Sofia; Mourão, Joana; Andreia Rebelo; Novais, Carla; Luísa Maria Vieira Peixe; Antunes, Patrícia. "Non-typhoidal
Salmonella serotypes adapted to diverse stresses in a poultry meat processing unit in Portugal". Paper presented in 12th
Meeting of Younger Researchers of University of Porto, Porto, 2019.
Published
- Antunes, Patrícia; Mourão, Joana; Alves, Tatiana; Campos, Joana; Novais, Carla; Peixe, L. "Biocides and multi-drug resistance
associated with the first extended-spectrum beta-lactamase-producing nontyphoidal Salmonella strain isolated in Portugal".
Paper presented in 22nd European Congress of Clinical Microbiology and Infectious Diseases, London, 2012.
Published
- Campos, Joana; Peixe, L; Mourão, Joana; Pires, João; Silva, Ana Cristina; Costa, Carmen; Nunes, Heloísa; et al. "Are ready-to-eat
salads an important vehicle of pathogenic and commensal bacteria resistant to antibiotics?". Paper presented in 21st European
Congress of Clinical Microbiology and Infectious Diseases, Milan, 2011.
Published
- Antunes, Patrícia; Mourão, Joana; Dias, Laura; Ferreira, Liliana; Peixe, L. "Genetic dynamics of the emerging Salmonella enterica
serotype 4,5,12:i- (monophasic variant of S. Typhimurium) in Portugal". Paper presented in 21st European Congress of Clinical
Microbiology and Infectious Diseases, Milan, 2011.
Published
|
Conference poster |
- Sousa, Márcia; Grosso, Filipa; Gonçalves Ribeiro, T; Peixe, L. "Genomic and phenotypic heterogeneity of Gardnerella genus
– implications for women’s urogenital health". Paper presented in III 1H-TOXRUN INTERNATIONAL CONGRESS 2024, 2024.
- Ana C. Almeida-Santos; Ana P. Tedim; Bárbara Duarte; Luís M. Silva; Júlio Teixeira; Ana P. Castro; Carla Novais; Luísa Maria
Vieira Peixe; Ana Raquel Pinho Freitas. "Vancomycin Variable Enterococcus faecium (VVE) in human clinical and commensal samples:
a challenge in antibiotic stewardship". Paper presented in 34rd European Congress of Clinical Microbiology and Infectious
Diseases (ECCMID), Barcelona, Spain, 2024.
- Ana C. Almeida-Santos; Ana P. Tedim; Bárbara Duarte; Michael Brilhante; Teresa M. Coque; Carla Novais; Ana Raquel Pinho Freitas;
Luísa Maria Vieira Peixe. "Beyond Antimicrobial Resistance: Competitive interactions and bacteriocin diversity in Enterococcus
faecium and Enterococcus lactis". Paper presented in 34rd European Congress of Clinical Microbiology and Infectious Diseases
(ECCMID), Barcelona, Spain, 2024.
- Sousa, Márcia; Grosso, Filipa; Gonçalves Ribeiro, T; Peixe, L. "Gardnerella Genomic and Phenotypic Insights into Female Urogenital
Health Complexity". Paper presented in ESCMID Global 2024 (the 34th Congress of the European Society of Clinical Microbiology
and Infectious Diseases), 2024.
- Ana R. Freitas; Ana C. Almeida-Santos; Bárbara Duarte; Antunes, Beatriz; Cabral, Maria; Read, Antónia; Alves, Valquíria; Novais,
Carla; Luísa Maria Vieira Peixe. "Are you choosing the right colony? Exploring phenotypic and genotypic variations in clinical
Enterococcus pure cultures". Paper presented in 34nd European Congress of Clinical Microbiology and Infectious Diseases
(ECCMID) Barcelona, 2024.
- Ana Beatriz Gonçalves; Read, Antónia; Isabel Neves; Alves, Valquíria; Luísa Maria Vieira Peixe; Novais, Ângela. "Rising prevalence
of ST15-KL19 carbapenemase-producing Klebsiella pneumoniae in post-COVID-19 in Portugal". Paper presented in 34nd European
Congress of Clinical Microbiology and Infectious Diseases (ECCMID) Barcelona, 2024.
- Ana Beatriz Gonçalves; Alves, Valquíria; Read, Antónia; Senjuti Saha; Kathryn E Holt; Luísa Maria Vieira Peixe; Novais, Ângela.
"Accelerating diagnosis by streamlining Klebsiella pneumoniae typing from blood culture bottles with Fourier transform infrared
spectroscopy". Paper presented in 34nd European Congress of Clinical Microbiology and Infectious Diseases (ECCMID) Barcelona,
2024.
- Ribeiro-Almeida, M; de Carvalho, André Pinto; Mourão, Joana; da Costa, Paulo Martins; Peixe, L; Antunes, Patrícia. "Long-term
persistence of mcr-1 carrying Escherichia coli in intensive rabbit farms after colistin ban". Paper presented in MICROBIOTEC´23
- Portuguese Congress of Microbiology and Biotechnology, 2023.
- Teixera, Pedro; Sousa, Márcia; Grosso, Filipa; Ribeiro, Teresa; Peixe, L. "Gardnerella pangenome analysis: Insights into the
phylogeny, resistome, virulome and host adaptation". Paper presented in Microbiotec, 2023.
- Mourão, Joana; Ribeiro-Almeida, M; Magalhães, Mafalda; Rebelo, Andreia; Novais, Carla; Peixe, L; Novais, Ângela; Antunes,
Patrícia. "Genomic Diversity of Klebsiella pneumoniae in Chicken Production Chain: Antibiotic Resistance and Metal Tolerance
Interplay". Paper presented in MICROBIOTEC´23 - Portuguese Congress of Microbiology and Biotechnology, 2023.
- Matos, Cátia; António Magalhães; Francisca Pereira; Duarte, Bárbara; Ana R. Freitas; Margarida Valente; Carolina Tavares;
et al. "Uncovering seasonal variations in antimicrobial-resistant enterococcus diversity within Porto region's surface waters".
Paper presented in XVIII Congresso Científico AEFFUP. Porto. Portugal, 2023.
- Andreia Rebelo; Duarte, Bárbara; Freitas, Ana R.; Agostinho Almeida; Rui Azevedo; Edgar Pinto; Luísa Maria Vieira Peixe; Antunes,
Patrícia; Novais, Carla. "Uncovering the Effects of Copper Feed Supplementation on the Emergence of Copper-Tolerant and Antibiotic-Resistant
Enterococcus in Poultry Production for Sustainable Environmental Practices". Paper presented in 6th International Conference
on Enterococci (ICE-6), 2023.
- Ana C. Almeida-Santos; Duarte, Bárbara; Maria J. Teixeira; Ana P. Tedim; Novais, Carla; Luísa Maria Vieira Peixe; Freitas,
Ana R. "Enterococcus lactis steals the spotlight: a predominant and highly bacteriocinogenic enterococci species obtained
from contemporary faecal samples of healthy humans in Portugal". Paper presented in 6th International Conference on Enterococci,
2023.
- Ana C. Almeida-Santos; Novais, Carla; J. A. Paganini; Malbert R. C. Rogers; Weizhen Xu; Rob JL Willems; Corander, Jukka; et
al. "Genomic Insights into Enterococcus faecalis: A Comprehensive Study of Population Structure, Plasmid Distribution, and
Source Associations in Portugal". Paper presented in 6th International Conference on Enterococci. Porto, Portugal,
2023.
- Pereira, Ana P.; Antunes, Patrícia; Bierge, Paula; Willems, Rob J.L.; Corander, Jukka; Coque, Teresa M.; Pich, Oscar Q.; et
al. "Unraveling Enterococcus Susceptibility to Quaternary Ammonium Compounds: genes, phenotypes, and the impact of environmental
conditions". Paper presented in 6th International Conference on Enterococci. Porto, Portugal, 2023.
- Bierge, Paula; Miquel Sánchez-Osuna; Pereira, Ana P.; Ana R. Freitas; Antonio Casabella; Luísa Maria Vieira Peixe; Mateu Espasa;
et al. "Unraveling the Enigma of Cephalosporin Susceptibility in Clinical Isolates of Enterococcus faecium: Genomic and Phenotypic
Characterization of Unique Strains". Paper presented in 6th International Conference on Enterococci. Porto, Portugal,
2023.
- Rebelo, Andreia; Duarte, Bárbara; Marisa Almeida; Freitas, Ana R; Agostinho Almeida; Azevedo, Rui; Pinto, Edgar; et al. "Uncovering
the Effects of Copper Feed Supplementation on the selection of Copper-Tolerant and Antibiotic-Resistant Enterococcus in Poultry
Production for Sustainable Environmental Practices". Paper presented in 6th International Conference on Enterococci. Porto,
Portugal, 2023.
- Ribeiro-Almeida, M; Carvalho, AP; Martins da Costa, Paulo; Luísa Maria Vieira Peixe; Antunes, Patrícia. Corresponding author:
Ribeiro-Almeida, M. "Colistin resistant Klebsiella pneumoniae in intensive rabbit farms after colistin ban". Paper presented
in FEMS 2023 ¿ Federation of European Microbiological Societies,, 2023.
- Matos, Cátia; Duarte, Bárbara; Rebelo, Andreia; Diana Lopes; Freitas, Ana R; Margarida Valente; Carolina Tavares; et al. "Occurrence
and Diversity of Antimicrobial Resistance Bacteria in Rivers of Northern Portugal.". Paper presented in II Jornadas do
Mestrado em Controlo de Qualidade. Porto, Portugal, 2023.
- Grosso, Filipa; Botelho, João; Silva, Liliana; Lood, Cédric; van Noort, Vera; Lavigne, Rob; Luísa Vieira Peixe. "Unraveling
the Genetic Mechanisms of blaIMP-5 Dissemination in Acinetobacter Species: Insights and Unanswered Questions". Paper presented
in 13th International Symposium on the Biology of Acinetobacter, 2023.
- Bierge, Paula; Miquel Sánchez-Osuna; Pereira, Ana P.; Rabanal, P.; Antonio Casabella; Mateu Espasa; Pérez D.; et al. "Genes
de resistencia a ampicilina en movimiento: caracterización de un plásmido, similar al pRE25, de un aislado de Enterococcus
faecium del torrente circulatório". Paper presented in XXVI Congreso Nacional de la Sociedad Española de Enfermedades Infecciosas
y Microbiología Clínica. Santiago de Compostela, Spain, 2023.
- Miquel Sánchez-Osuna; Bierge, Paula; Pereira, Ana P.; Antonio Casabella; Espasa, M.; Luísa Maria Vieira Peixe; Oriol Gasch;
et al. "Genomas de Enterococcus con genes pbp5 redundantes: una perspectiva evolutiva de la diseminación de la resistencia
a ampicilina". Paper presented in XXVI Congreso Nacional de la Sociedad Española de Enfermedades Infecciosas y Microbiología
Clínica. Santiago de Compostela, Spain, 2023.
- Mafalda Magalhães; Marisa Ribeiro-Almeida; Mourão, Joana; Andreia Rebelo; Diana Lopes; Sofia Paiva; Luísa Maria Vieira Peixe;
Novais, Carla; Antunes, Patrícia. "From farm-to-fork: occurrence of persistent multidrug-resistant and copper-tolerant Klebsiella
pneumoniae clone in poultry farms". Paper presented in 16ª Edição Encontro de Investigação Jovem da Universidade do Porto,
2023.
- Magalhães, Mafalda; Ribeiro-Almeida, M; Mourão, Joana; Rebelo, Andreia; Lopes, D; Peixe, L; Novais, Ângela; Novais, Carla;
Antunes, Patrícia. "From farm-to-fork: occurrence of persistent multidrug-resistant and copper tolerant Klebsiella pneumoniae
clones in poultry farms". Paper presented in 16th Meeting of Younger Researchers of the University of Porto (IJUP 2023),
2023.
- Cátia Matos; Duarte, Bárbara; Rebelo, Andreia; Diana Lopes; Freitas, Ana R; Margarida Valente; Carolina Tavares; et al. "Assessment
of Antimicrobial Resistance Spread in Surface Aquatic Systems: A Study of Four Rivers in North Portugal". Paper presented
in IJUP 2023 ¿ Encontro de Investigação Jovem, Porto, Portugal, 2023.
- Ana Beatriz Gonçalves; Alves, Valquíria; Isabel Neves; Read, Antónia; Luísa Maria Vieira Peixe; Novais, Ângela. "Emergence
of carbapenem-resistant Klebsiella pneumoniae strains with variable mechanisms of resistance to ceftazidime-avibactam and
imipenem-relebactam". Paper presented in 28º SIMPÓSIO DE INFECÇÃO E SÉPSIS - PORTO, 2023.
- Ana C. Almeida-Santos; Duarte, Bárbara; Maria J. Teixeira; Ana P. Tedim; Novais, Carla; Luísa Maria Vieira Peixe; Freitas,
Ana R. "Novel insights into healthy humans faecal carriage of enterococci: Enterococcus lactis is as a dominant highly bacteriocinogenic
species". Paper presented in II TOXRUN International Congress 2023, 2023.
- Andreia Rebelo; Duarte, Bárbara; Marisa Ribeiro-Almeida; Ana R. Freitas; Agostinho Almeida; Rui Azevedo; Edgar Pinto; et al.
"Impact of organic and inorganic copper feed in the expansion of tcrB+ multidrug-resistant Enterococcus from poultry production".
Paper presented in 33rd European Congress of Clinical Microbiology and Infectious Diseases, 2023.
- Ana C. Almeida-Santos; Duarte, Bárbara; Maria João Teixeira ; Ana P. Tedim; Novais, Carla; Luísa Maria Vieira Peixe; Freitas,
Ana R. Corresponding author: Maria João Teixeira. "An update on faecal carriage of Enterococcus species by healthy humans
unveils E. lactis as a predominant highly bacteriocinogenic species that can harbor optrA". Paper presented in 33rd European
Congress of Clinical Microbiology and Infectious Diseases, 2023.
- Mourão, Joana; Ribeiro-Almeida, M; Magalhães, Mafalda; Rebelo, Andreia; Novais, Carla; Peixe, L; Novais, Ângela; Antunes,
Patrícia. "In-depth genomic analysis of Klebsiella pneumoniae from intensive poultry production: an understudied non-clinical
setting". Paper presented in 33rd ECCMID European Congress of Clinical Microbiology and Infectious Diseases, 2023.
- Magalhães, Mafalda; Ribeiro-Almeida, M; Mourão, Joana; Rebelo, Andreia; Lopes, D; Paiva, S; Peixe, L; et al. "From farm-to-fork:
occurrence of multidrug-resistant and copper-tolerant Klebsiella pneumoniae successful clones in poultry farms". Paper presented
in 33rd ECCMID European Congress of Clinical Microbiology and Infectious Diseases, 2023.
- Ana C. Almeida-Santos; Duarte, Bárbara; Tedim, Ana P.; Miguel D. Fernández-de-Bobadilla; Silva, L.M.; Ramos, H.; Coque, Teresa
M; et al. "Vancomycin-resistant Enterococcus faecium circulating in a Portuguese hospital (2009-2021) challenges classical
infection control". Paper presented in II Toxrun International Congress 2023. Porto, Portugal, 2023.
- Luís M. Sampaio; Cláudia-Ferreira, Ana; Prata, Joana C.; Rui M.S. Azevedo; Pacheco, Patricia ; Carla Campos; Novais, Carla;
et al. "Nasal colonization by Staphylococcus aureus in Health Sciences students and analysis of risk factors under a One Health
perspective". Paper presented in II Toxrun International Congress 2023. Porto, Portugal, 2023.
- Ana C. Almeida-Santos; Duarte, Bárbara; Maria João Teixeira ; Ana P. Tedim; Novais, Carla; Luísa Maria Vieira Peixe; Ana R.
Freitas. "An update on faecal carriage of Enterococcus species by healthy humans unveils E. lactis as a predominant highly
bacteriocinogenic species that can harbor optrA. ePoster flash presentation.". Paper presented in 33rd European Congress
of Clinical Microbiology and Infectious Diseases (ECCMID), Copenhagen, Denmark, 2023.
- Louise Roer; Hülya Kaya; Ana P. Tedim; Novais, Carla; Coque, Teresa M; Luísa Maria Vieira Peixe; Hasman, Henrik; Hammerum,
Anette M.; Freitas, Ana R. "In silico extended virulence profiling of Enterococcus faecium and Enterococcus lactis isolates
by use of whole-genome sequencing data". Paper presented in 33rd European Congress of Clinical Microbiology and Infectious
Diseases (ECCMID), Copenhagen, Denmark, 2023.
- Bierge, Paula; Miquel Sánchez-Osuna; Pereira, Ana P.; Rabanal, P.; Antonio Casabella; Mateu Espasa; Daniel Pérez; et al. "Ampicillin
resistance genes on the move: characterization of a pRE25-like::pbp5 plasmid from a bloodstream Enterococcus faecium". Paper
presented in 33rd European Congress of Clinical Microbiology and Infectious Diseases (ECCMID), Copenhaga, Dinamarca,
2023.
- Ana C. Almeida-Santos; Duarte, Bárbara; Ana P. Tedim; Fernández-De-Bobadilla MD; Luís M Silva; Helena Ramos; Coque, Teresa
M.; et al. "Characterization of vancomycin-resistant Enterococcus faecium from a central hospital over the last decade: fluctuating
clones, plasmids and bacteriocins challenge classical infection control". Paper presented in 33rd European Congress of
Clinical Microbiology and Infectious Diseases (ECCMID), Copenhagen, Denmark, 2023.
- Pereira, Ana P.; Antunes, Patrícia; Luísa Maria Vieira Peixe; Freitas, Ana R; Novais, Carla. "Different growth conditions
occurring in the environment affect Enterococcus spp. susceptibility to quaternary ammonium compounds". Paper presented in
33rd European Congress of Clinical Microbiology and Infectious Diseases (ECCMID), Copenhagen, Denmark, 2023.
- Miquel Sánchez-Osuna; Bierge, Paula; Pereira, Ana P.; Antonio Casabella; Mateu Espasa; Luísa Maria Vieira Peixe; Oriol Gasch;
et al. "Enterococcus genomes with redundant pbp5 genes: evolutionary insights into the ampicillin resistance dissemination".
Paper presented in 33rd European Congress of Clinical Microbiology and Infectious Diseases (ECCMID), Copenhagen, Denmark,
2023.
- Ana C. Almeida-Santos; Duarte, Bárbara; Ana P. Tedim; Fernández-De-Bobadilla MD; Luís M Silva; Helena Ramos; Coque, Teresa
M.; et al. "Characterization of vancomycin-resistant Enterococcus faecium from a central hospital over the last decade: fluctuating
clones, plasmids and bacteriocins challenge classical infection control. ePoster flash presentation.". Paper presented in
33rd European Congress of Clinical Microbiology and Infectious Diseases (ECCMID), Copenhagen, Denmark, 2023.
- Ana Beatriz Gonçalves; Alves, Valquíria; Isabel Neves; Read, Antónia; Natália Pinheiro ; Gema Mendez ; Luis Mancera ; et
al. "FT-IR ATR supporting infection control of carbapenemase-producing Klebsiella pneumoniae in real-time". Paper presented
in 33nd European Congress of Clinical Microbiology and Infectious Diseases (ECCMID) Copenhaga, 2023.
- Ribeiro TG; Furlan, JPR; Mendez, Gema; Mancera, Luis; Novais, Ângela; Peixe, L. "FT-IR ATR spectroscopy for rapid and low-cost
identification of clinically relevant Citrobacter species". Paper presented in 33rd European Congress of Clinical Microbiology
& Infectious Diseases, 2023.
- Garcia, Andreia; Guimarães, António Mesquita; Ribeiro TG; Grosso, Filipa; Peixe, L. "Why bacteriocin-producing Lactobacillaceae
do not protect women in the same manner?". Paper presented in 33rd European Congress of Clinical Microbiology & Infectious
Diseases, 2023.
- Andreia Garcia; Ribeiro TG; Grosso, Filipa; Luísa Maria Vieira Peixe. "A novel Limosilactobacillus mucosae subspecies isolated
from the female urinary microbiota". Paper presented in Microbiotec23 - Congress of Microbiology and Biotechnology 2023,
2023.
- Ana C. Almeida-Santos; Maria J. Teixeira; Duarte, Bárbara; Novais, Carla; Luísa Maria Vieira Peixe; Ana R. Freitas. "Update
on the faecal carriage of enterococci by Portuguese healthy humans unveils Enterococcus lactis as a predominant species".
Paper presented in Dia do laboratório de Microbiologia 2022, FFUP, 2022.
- Pereira, Ana P.; Antunes, Patrícia; Willems, R.J.; Corander, Jukka; Luísa Maria Vieira Peixe; Freitas, Ana R; Novais, Carla.
"Enterococcus spp. are susceptible to Quaternary Ammonium Compounds used in disinfection and share tolerance genes with multiple
bacterial taxa". Paper presented in Dia do laboratório de Microbiologia 2022, FFUP, 2022.
- Rebelo, Andreia; Duarte, Bárbara; Ferreira, Carolina; Mourão, Joana; Ribeiro, Sofia; Freitas, AR; Coque, TM; et al. "Chicken
meat associated Enterococcus spp from 20 years apart overcomes multiple stresses of poultry production chain: antibiotics,
copper and acids". Paper presented in Dia do Laboratório de Microbiologia, 2022.
- Pereira, Ana Paula; Antunes, Patrícia; Peixe, L; Freitas, Ana R; Novais, Carla. "Quaternary ammonium compounds tolerance genes
found among Enterococcus spp. are shared with multiple bacterial taxa". Paper presented in 13th International Meeting on
Microbial Epidemiological Markers (IMMEM XIII), 2022.
- Gomes, Anicia; Mourão, Joana; Santos, Conceição; Peixe, L; Antunes, Patrícia. "Manure-amended soils is a major source of greenhouses
contamination with Escherichia coli carrying antibiotic resistance mcr and blaCTX-M genes of highest priority for public health".
Paper presented in 13th IMMEM International Meeting on Microbial Epidemiological Markers, 2022.
- Almeida-Santos, Ana C.; Duarte, B.; Tedim, Ana P; Silva, L.M.; Ramos, H.; Coque, T.M.; Novais, C.; Peixe, L; Freitas, A.R..
"Clonal and plasmid dynamics of vancomycin-resistant Enterococcus faecium obtained from a single hospital institution over
the last 20 years". Paper presented in 13th International Meeting on Microbial Epidemiological Markers (IMMEM XIII),
2022.
- Bierge, Paula; Pereira, Ana Paula; Rabanal, Patricia; Casabella, Antonio; Espasa, Mateu; Garcia de la Mària, Cristina; Peixe,
L; et al. "Genomic characterization of Enterococcus faecium isolates with atypical antibiotic resistance and virulence profiles
causing bloodstream infections.". Paper presented in 32nd European Congress of Clinical Microbiology & Infectious Diseases
(Lisbon, Portugal), 2022.
- Ribeiro-Almeida, M; Magalhães, Tatiana Mafalda; Mourão, Joana; Paiva, Sofia; Freitas, Ana R; Novais, Carla; Peixe, L; Antunes,
Patrícia. "Raw pet food: new human transmission route for Salmonella 1,4,[5],12:i:- and mcr-1 genes in Europe". Paper presented
in 32nd ECCMID European Congress of Clinical Microbiology and Infectious Diseases, 2022.
- Ribeiro-Almeida, M; Pinto de Carvalho, A; Ribeiro, R; da Costa, PM; Peixe, L; Antunes, Patrícia. "Occurrence of Escherichia
coli carrying mcr in intensive rabbit farms after colistin ban". Paper presented in One Health EJP Annual Scientific Meeting,
2022.
- Pereira, A. P.; Antunes, P.; Peixe, L; Freitas, A.R.; Novais, C.. "Good activity of quaternary ammonium compounds against
multidrug-resistant Enterococcus faecium of different clonal lineages and origins". Paper presented in 32nd European Congress
of Clinical Microbiology and Infectious Diseases, 2022.
- Ana Beatriz Gonçalves; Ribeiro TG; Novais, Ângela; Peixe, L. "Affiliation of ACT, MIR and CMH ß-lactamases clarifies Enterobacter
taxonomy and dispersion of these enzymes". Paper presented in 32nd European Congress of Clinical Microbiology and Infectious
Diseases (ECCMID), 2022.
- Cappelli, Elisabete Alves; Ksiezarek, M; Perovic, SU; Ribeiro TG; Peixe, L. "Genomic, virulence and antimicrobial resistance
features of putative new species of the genus Corynebacterium in the female urogenital microbiota". Paper presented in 32nd
European Congress of Clinical Microbiology and Infectious Diseases (ECCMID), 2022.
- Sousa, Márcia; Ksiezarek, M; Perovic, SU; Ribeiro TG; Grosso, Filipa; Peixe, L. "Gardnerella in the urine microbiota of healthy
women and patients diagnosed with overactive bladder: relevance insights by whole genome sequencing". Paper presented in 32nd
European Congress of Clinical Microbiology and Infectious Diseases (ECCMID), 2022.
- Garcia, Andreia; Ribeiro TG; Grosso, Filipa; Peixe, L. "Bacteriocin diversity, antimicrobial resistance genes and prophages
repertoire in Lactobacillaceae from the female urinary microbiota". Paper presented in International Union of Microbiological
Societies (IUMS 2022), 2022.
- Teixeira, M. J.; Almeida-Santos, Ana C.; Duarte, B.; Novais, C.; Dinis-Oliveira, Ricardo Jorge; Peixe, L; Freitas, Ana R.
"Faecal carriage of enterococci by Portuguese healthy humans: preliminary data towards accurate species identification for
forensic applications". Paper presented in I Congresso Internacional da TOXRUN & V Congresso Internacional da Associação
Portuguesa, 2022.
- Pereira, Ana Paula; Antunes, Patrícia; Willems, Rob; Corander, Jukka; Peixe, L; Freitas, Ana R; Novais, Carla. "Quaternary
Ammonium Compounds' activity and occurrence of tolerance associated genes among Enterococcus faecalis and Enterococcus faecium
from diverse origins and timespans.". Paper presented in Microbiotec¿21 ¿ Congress of Microbiology and Biotecnology,
2021.
- Ribeiro, Sofia; Mourão, Joana; Novais, Ângela; Campos, Joana; Peixe, L; Antunes, Patrícia. "Do prado ao prato: retirada da
colistina em explorações avícolas portuguesas resulta na redução de bactérias resistentes em carne de frango". Paper presented
in 13th Annual Meeting PortFIR, 2021.
- Rebelo, Andreia; Duarte, Bárbara; Baptista, Carina; Ribeiro-Almeida, M; Monteiro, Eulália; Pereira, Beatriz; Ribeiro, Sofia;
et al. "Impact of organic and inorganic copper feed formulations in the selection of copper tolerant and multidrug resistant
Enterococcus faecium from poultry farms and meat available to consumers". Paper presented in 31st European Congress of
Clinical Microbiology and Infectious Diseases, 2021.
- Ugarcina-Perovic, Svetlana; Ksiezarek, M; Gonçalves-Ribeiro, Teresa; Rocha, Joana; Cappelli Alves, Elisabete; Sousa, Márcia;
Grosso, F; et al. "Effectiveness of MALDI-TOF MS for bacterial identification in the urogenital microbiome studies". Paper
presented in World Microbe Forum, 2021.
- Sousa, Márcia; Ksiezarek, M; Ugarcina-Perovic, Svetlana; Grosso, Filipa; Gonçalves-Ribeiro, Teresa; Peixe, L. "Diversity and
Dynamics of Gardnerella Species in Healthy Female Urogenital Microbiota". Paper presented in World Microbe Forum, 2021.
- Ribeiro-Almeida, M; Novais, Ângela; Monteiro, E; Ribeiro, S; Rebelo, Andreia; Baptista, C; Peixe, L; Novais, Carla; Antunes,
Patrícia. "Diverse colistin resistant and copper tolerant Klebsiella pneumoniae global high-risk clones in poultry farms".
Paper presented in World Microbe Forum / the FEMS2021 Congress, 2021.
- Ribeiro-Almeida, M; Novais, Ângela; Mourão, Joana; Pereira, Sofia; Freitas-Silva, Joana; Ribeiro, Sofia; Ugarcina-Perovic,
Svetlana; et al. "MCR-1 in gulls is associated with diverse emerging zoonotic E. coli clonal lineages and plasmids enriched
in antibiotic resistance genes, metal operons and virulence factors". Paper presented in World Microbe Forum 2021 (an ASM
and FEMS collaboration), 2021.
- Ksiezarek, M; Ugarcina-Perovic, S; Rocha, J; Grosso, F; Peixe, L. "Long-term dynamics of the urinary microbiota of healthy
European women". Paper presented in 1st Microbiome PT Summit, 2021.
- Ugarcina-Perovic, Svetlana; Ksiezarek, Magdalena; Rocha, Joana; Sousa, Márcia; Ribeiro TG; Grosso, Filipa; Peixe, L. "Urinary
microbiome structure of healthy women: a comprehensive description supported in culturomics and amplicon sequencing". Paper
presented in 1st Microbiome PT Summit, 2021.
- Sousa, Márcia; Ksiezarek, Magdalena; Grosso, Filipa; Gonçalves Ribeiro, Teresa; Peixe, L. "Gardnerella species in the healthy
female urinary microbiome - a step forward in understanding their diversity and interactions". Paper presented in 1st Microbiome
PT Summit, 2021.
- Ribeiro TG; Rocha, J; Ksiezarec, M; Grosso, F; Perovic, SU; Peixe, L. "Lactobacillus Species Combinations and Shifts Overtime
in the Healthy Female Urogenital Tract". Paper presented in World Microbe Forum, 2021.
- Perovic, SU; Ksiezarec, M; Ribeiro TG; Grosso, F; Sousa, Márcia; Peixe, L. "Effectiveness of MALDI-TOF Mass Spectrometry for
Bacterial Identification in the Urogenital Microbiome Studies". Paper presented in WORLD MICROBE FORUM, 2021.
- Grosso, F; Antunes, Patrícia; Freitas, Ana R; Ribeiro TG; Novais, Carla; Novais, Â; Peixe, L. "Communication strategies: Explaining
the Antibiotics Resistance to High School Students in a One Health Perspective". Paper presented in Simposio MicroMundo
2021, 2021.
- Sousa, Márcia; Ksiezarek, Magdalena; Ugarcina-Perovic, Svetlana; Grosso, Filipa; Ribeiro TG; Peixe, L. "Occurrence and diversity
of Gardnerella spp. in the midstream urine and vaginal swabs of asymptomatic women". Paper presented in 31st European Congress
of Clinical Microbiology & Infectious Diseases (ECCMID 2021), 2021.
- Cappelli, Elisabete Alves; Ksiezarek, Magdalena; Ugarcina-Perovic, Svetlana; Ribeiro TG; Peixe, L. "Insights into Corynebacterium
species diversity and stability in healthy urogenital microbiome". Paper presented in 31st European Congress of Clinical
Microbiology & Infectious Diseases (ECCMID 2021), 2021.
- Sousa, Márcia; Ksiezarek, M; Perovic, Svetlana Ugarcina; Grosso, Filipa; Ribeiro TG; Peixe, L. "Two novel Gardnerella species
isolated from urine of women". Paper presented in MICROBIOTEC21, 2021.
- Rebelo, Andreia; Duarte, Bárbara; Ferreira, C; Freitas, Ana R; Peixe, L; Antunes, Patrícia; Novais, Carla. "Exploring Enterococcus
susceptibility to co-occurring stresses in the poultry meat production chain: antibiotics, copper, acidic pH and peracetic
acid". Paper presented in Microbiotec21 - Congress of Microbiology and Biotechnology 2021 (online), 2021.
- Pereira, Ana Paula; Duarte, Bárbara; Antunes, Patrícia; Willems, R; Corander, J; Peixe, L; Freitas, Ana R; Novais, Carla.
"Chlorhexidine and quaternary ammonium compounds activity against Enterococcus faecalis from diverse sources, timespans and
clonal lineages". Paper presented in World Microbe Forum (online), 2021.
- Ana Beatriz Gonçalves; Ribeiro TG; Novais, Ângela; Luísa Maria Vieira Peixe. "Reconstruction of ACT/MIR/CMH phylogeny reveals
species-specific Evolution Within Enterobacter spp.". Paper presented in World Microbe Forum, 2021.
- Ksiezarek, M; Goncalves, T; Rocha, J; Grosso, F; Ugarcina-Perovic, S; Peixe, L. "Unveilling novel Limosilactobacillus species
in the urogenital tract of healthy women". Paper presented in FEMS Online Conference on Microbiology 2020, 2020.
- Rebelo, Andreia; Mourão, Joana; Freitas, Ana R; Coque, Teresa M; Almeida, Agostinho; Peixe, L; Antunes, Patrícia; Novais,
Carla. "Redundancy in ArsA proteins among enterococci makes this bacterial group a potential sentinel of arsenic pollution".
Paper presented in One Health EJP Annual Scientific Meeting 2020 (OHEJP ASM 2020), 2020.
- Rebelo, Andreia; Mourão, Joana; Freitas, Ana R; Campos, Joana; Peixe, L; Antunes, Patrícia; Novais, Carla. "Assess of acid
tolerance of non-typhoidal Salmonella and Enterococcus faecium from different sources and genetic backgrounds.". Paper presented
in 19th Congress of Microbiology and Biotechnology 2019, University of Coimbra, Portugal., 2019.
- Novais, Carla; Freitas, Ana R; Rebelo, Andreia; Ferreira, Carolina; Duarte, Bárbara; Ribeiro, Sofia; Mourão, Joana; Antunes,
Patrícia; Peixe, L. "Raw chicken meat is a vehicle of ampicillin-multidrug-resistant Enterococcus faecium: is it One Health
problem?". Paper presented in 1º Simpósio INIAV para a Segurança Alimentar: ¿RUMO À ALIMENTAÇÃO DO FUTURO, 2019.
- Ribeiro, Sofia; Mourão, Joana; Campos, Joana; Ugarcina-Perovic, Svetlana; Novais, Ângela; Peixe, L; Antunes, Patrícia. "Widespread
of colistin-resistant mcr-positive Enterobacteriaceae in fresh chicken meat, new food safety challenges and threats for one
health". Paper presented in 1º Simpósio INIAV para a Segurança Alimentar: RUMO À ALIMENTAÇÃO DO FUTURO¿, 2019.
- Rebelo, Andreia; Mourão, Joana; Freitas, Ana R; Campos, Joana; Peixe, L; Antunes, Patrícia; Novais, Carla. "Comprehensive
assessment of the ability of non-typhoidal Salmonella and Enterococcus faecium to survive acidic environments.". Paper presented
in 8th Congress of European Microbiologists - FEMS 2019, Glasgow, Scotland., 2019.
- Ribeiro, Sofia; Rebelo, Andreia; Mourão, Joana; Novais, Carla; Peixe, L; Antunes, Patrícia. "Presence of non-typhoidal Salmonella
adapted to diverse stresses in raw chicken meat, Portugal.". Paper presented in 8th Congress of European Microbiologists
- FEMS 2019, Glasgow, Scotland., 2019.
- Botelho, João; Rocha J; Lood, Cédric; Carriço JA; Ribeiro TG; van Noort, Vera; Lavigne, Rob; Grosso, F; Peixe, L. Corresponding
author: Botelho, João. "Pseudomonas catumbelensis sp. nov. is a novel species within the Pseudomonas putida phylogenetic group
isolated from a septic tank in Angola and carrying several antimicrobial resistance genes". Paper presented in 8th Congress
of European Microbiologists (FEMS 2019), 2019.
- Botelho, João; Rocha J; Lood, Cédric; Partridge, Sally R.; Carriço JA; Ribeiro TG; van Noort, Vera; et al. "Characterization
of a large blaVIM-2-carrying plasmid in Pseudomonas portuensis sp. nov., a novel species within the Pseudomonas putida phylogenetic
group". Paper presented in 8th Congress of European Microbiologists (FEMS 2019), 2019.
- Botelho, João; Roberts, AP; Mourão, Joana; Grosso, F; Peixe, L. Corresponding author: Botelho, João. "Integrative and conjugative
elements, the neglected drivers of carbapenemase-encoding genes". Paper presented in ASM Microbe, 2019.
- Ribeiro, Sofia; Mourão, Joana; Rebelo, Andreia; Novais, Carla; Peixe, L; Antunes, Patrícia. "Detection of Salmonella serotypes
adapted to diverse stresses in poultry meat at processing level in Portugal.". Paper presented in 29th European Congress
of Clinical Microbiology and Infectious Diseases, Amsterdam, Netherlands., 2019.
- Antunes, Patrícia; Ribeiro, Sofia; Mourão, Joana; Rebelo, Andreia; Novais, Carla; Peixe, L. "Detection of Salmonella serotypes
adapted to diverse stresses in poultry meat at the processing level in Portugal". Paper presented in 29th ECCMID European
Congress of Clinical Microbiology and Infectious Diseases, 2019.
- Ribeiro, Sofia; Mourão, Joana; Campos, Joana; Perovic, Svetlana U; Novais, Ângela; Peixe, L; Antunes, Patrícia. "High occurrence
of mcr-1 among diverse Enterobacteriaceae clones and plasmids in chicken meat alert for potential foodborne transmission of
mcr-1 to humans". Paper presented in 29th ECCMID European Congress of Clinical Microbiology and Infectious Diseases,
2019.
- Botelho, João; Lood, Cédric; Partridge, Sally R.; van Noort, Vera; Lavigne, Rob; Grosso, F; Peixe, L. Corresponding author:
Botelho, João. "Megaplasmids on the rise: combining sequencing approaches to fully resolve a carbapenemase-encoding plasmid
in a novel Pseudomonas species". Paper presented in 29th European Congress of Clinical Microbiology and Infectious Diseases
(ECCMID), 2019.
- Grosso, F; Botelho, João; Lira, A; Lameirão, A; Selaru, A; Abreu, G; Lopes, P; Mota, M; Peixe, L. Corresponding author: Grosso,
F. "GES-6 Pseudomonas aeruginosa producers more common than expected questioning ceftolozane/tazobactam efficacy". Paper presented
in 29th European Congress of Clinical Microbiology and Infectious Diseases (ECCMID), 2019.
- Rocha, Joana; Botelho, João Francisco Tomaz Santos; Ksiezarek, Magdalena; Ribeiro, Teresa Goncalves; Machado, Miguel Paulo;
Carrico, Joao Andre; Peixe, Luisa Maria Vieira; et al. "Lactobacillus femina sp. nov., a new species of lactobacillus delbrueckii
group". 2019.
- Ksiezarek, M; Perovic, SU; Rocha, J; Grosso, F; Peixe, L. "Female urinary microbiota: who´s coming, who´s going, and who´s
staying". Paper presented in MicroBiotec 2019, 2019.
- Ksiezarek, M; Perovic, SU; Rocha, J; Grosso, F; Peixe, L. "Culturomics in Action – Advances in the Profiling of the Complex
Healthy Female Urinary Microbiota". Paper presented in ASM Microbe 2019, 2019.
- Ksiezarek, M; Perovic, SU; Rocha, J; Moreira, M; Grosso, F; Peixe, L. "Vaginal and urinary microbiota in healthy women of
reproductive age: greater pathogens sharing than previously thought". Paper presented in 29th European Congress of Clinical
Microbiology & Infectious Diseases, 2019.
- Peixoto, B; Rodrigues, C; Ksiezarek, M; Perovic, SU; Rocha , J; Novais, Â; Peixe, L. "Escherichia coli and Klebsiella pneumoniae
from urinary and intestinal microbiota: friends or foes?". Paper presented in Investigação Jovem da Universidade do Porto
(IJUP 2019), 2019.
- Botelho, João; Roberts, AP; León-Sampedro, R; Grosso, F; Peixe, L. Corresponding author: Botelho, João. "An in silico approach
to explore the link between carbapenemase-producing Pseudomonas spp. and ICE". Paper presented in Antimicrobial Resistance
¿ Genomes, Big Data and Emerging Technologies, 2018.
- Botelho, João; Roberts, AP; León-Sampedro, R; Grosso, F; Peixe, L. Corresponding author: Botelho, João. "Carbapenemases on
the move: it¿s good to be on ICE". Paper presented in Copenhagen Bioscience Conference 15 - Averting the post-antibiotic
era, 2018.
- Ribeiro, Sofia; Mourão, Joana; Rebelo, Andreia; Novais, Carla; Peixe, L; Antunes, Patrícia. "Low detection of Salmonella in
a poultry meat processing unit in the north of Portugal". Paper presented in 5º Simpósio Nacional - Promoção de uma Alimentação
Saudável e Segura ¿ SPASS 2018, 2018.
- Mourão, Joana; Andreia Rebelo; Ribeiro, Sofia; Peixe, L; Novais, Carla; Antunes, Patrícia. "Successful multidrug-resistant
and copper-tolerant Salmonella clones are enriched in arsenic tolerance genes". Paper presented in International Symposium
Salmonella and Salmonellosis (I3S), 2018.
- Mourão, Joana; Campos, Joana; Ribeiro, Sofia; Peixe, L; Antunes, Patrícia. "Ongoing dissemination of mcr-1 genes in successful
multidrug-resistant and copper-tolerant Salmonella clones". Paper presented in International Symposium Salmonella and Salmonellosis
(I3S), 2018.
- Rebelo, Andreia; Mourão, Joana; Freitas, Ana R; Silveira, Eduarda; Coque, Teresa; Peixe, L; Antunes, Patrícia; et al. "Widespread
copper, mercury and arsenic tolerance genes among multidrug-resistant Enterococcus spp. from human, animal and environmental
origins.". Paper presented in 28th European Congress of Clinical Microbiology and Infectious Diseases, Madrid, Spain.,
2018.
- Campos, Joana; Ribeiro, Sofia; Mourão, Joana; Peixe, L; Antunes, Patrícia. "Screening of novel plasmid-mediated colistin resistance
genes mcr-3, mcr-4 and mcr-5". Paper presented in 28th ECCMID European Congress of Clinical Microbiology and Infectious
Diseases, 2018.
- Botelho, João; Roberts, AP; Grosso, F; Peixe, L. "A wide array of integrative conjugative elements associated with carbapenemase-encoding
genes in Pseudomonas genomes is disclosed by in silico analysis". Paper presented in 28th European Congress of Clinical
Microbiology and Infectious Diseases (ECCMID), 2018.
- Perovic, SU; Rocha, J; Ksiezarek, M; Silva, I.; Martins, V; Grosso, F; Peixe, L. "Capturing the diversity of the female urinary
microbiota through improved culturomic and metagenomic analysis". Paper presented in 28th European Congress of Clinical
Microbiology and Infectious Diseases, 2018.
- Ksiezarek, M; Grosso, F; Martins, V; Silva, I.; Rocha, J; Perovic, SU; Peixe, L. "Urinary microbiota from healthy women as
a reservoir of neonates´ pathogens". Paper presented in 28th European Congress of Clinical Microbiology and Infectious
Diseases, 2018.
- Perovic, SU; Rocha, J; Ksiezarek, M; Grosso, F; Peixe, L. "Capturing the healthy female urinary microbiome diversity by improved
metagenomic protocol". Paper presented in EMBL Symposium - The Human Microbiome, 2018.
- Mourão, Joana; Campos, Joana; Ribeiro, Sofia; Peixe, L; Antunes, Patrícia. "Colistin resistance mediated by mcr-1 in Salmonella:
a new threat in the food chain". Paper presented in 5º Simpósio Nacional - Promoção de uma Alimentação Saudável e Segura
¿ SPASS 2018, 2018.
- Rebelo, Andreia; Mourão, Joana; Freitas, Ana R; Coque, Teresa; Almeida, Agostinho; Peixe, L; Antunes, Patrícia; Novais, Carla.
"Distribution of Arsenic Tolerance Genes (arsA) among Enterococcus spp. from different sources, continents and timeframes
(<1906-2015).". Paper presented in Congress of Microbiology and Biotechnology - MICROBIOTEC17, Porto, Portugal, 2017.
- Botelho, João; Grosso, F; Ribeiro TG; Peixe, L. Corresponding author: Botelho, João. "Whole-genome sequencing of a potentially
new Pseudomonas species from a non-clinical niche in Angola uncovers a wide array of antimicrobial resistance genes and mobile
genetic elements". Paper presented in MicroBiotec 17, 2017.
- Botelho, João; Grosso, F; Peixe, L. Corresponding author: Botelho, João. "Unraveling the genome of a Pseudomonas aeruginosa
isolate belonging to the high-risk clone ST235 exposes a putative integrative conjugative element housing a blaGES-6 carbapenemase".
Paper presented in 16th International Conference on Pseudomonas, 2017.
- Botelho, João; Grosso, F; Peixe, L. Corresponding author: Botelho, João. "Two decades of relentless blaVIM-2 producing Pseudomonas
aeruginosa dissemination: the decisive role of mobile genetic elements and successful clones". Paper presented in 16th
International Conference on Pseudomonas, 2017.
- Mourão, Joana; Rebelo, Andreia; Freitas, Ana R; Coque, Teresa; Almeida, Agostinho; Peixe, L; Antunes, Patrícia; Novais, Carla.
"Spread of variable arsenic tolerance genes among Enterococcus spp. from different hosts, environments and geographical regions
(<1906-2015).". Paper presented in 7th Congress of European Microbiologists - FEMS 2017, Valencia, Spain., 2017.
- Mourão, Joana; Rebelo, Andreia; Machado, Joana; Almeida, Agostinho; Peixe, L; Novais, Carla; Antunes, Patrícia. "Arsenic tolerance
genes are frequent among Salmonella pig-associated clinically-relevant clones.". Paper presented in 7th Congress of European
Microbiologists - FEMS 2017, Valencia, Spain., 2017.
- Botelho, João; Grosso, F; Peixe, L. Corresponding author: Botelho, João. "Whole-genome sequencing unveils a potentially new
Pseudomonas species associated with Tn6372, a novel blaVIM-2-transposable element". Paper presented in 7th Congress of
European Microbiologists (FEMS 2017), 2017.
- Botelho, João; Grosso, F; Mabrouk, Aymen; Peixe, L. Corresponding author: Botelho, João. "Complete nucleotide sequence of
pJB58, a blaVIM-2-harboring plasmid from Pseudomonas aeruginosa". Paper presented in 7th Congress of European Microbiologists
(FEMS 2017), 2017.
- Botelho, João; Grosso, F; Mabrouk, Aymen; Peixe, L. Corresponding author: Botelho, João. "Complete nucleotide sequence of
an IncP-2 blaVIM-2-harboring megaplasmid from Pseudomonas aeruginosa". Paper presented in 27th European Congress of Clinical
Microbiology and Infectious Diseases (ECCMID), 2017.
- Mabrouk, Aymen; Grosso, F; Botelho, João; Silva, Liliana; Achour, Wafa; Ben Hassen, Assia; Peixe, L. Corresponding author:
Mabrouk, Aymen. "Regional clones and carbapenemases associated with carbapenem-resistant Acinetobacter baumannii in nosocomial
settings in Tunis, Tunisia". Paper presented in 27th European Congress of Clinical Microbiology and Infectious Diseases
(ECCMID), 2017.
- Rocha, J; Ksiezarek, M; Grosso, F; Perovic, SU; Peixe, L; Carriço, JA. "Methodological improvements on urine sample analysis:
towards comprehensive understanding of urinary microbiome". Paper presented in ASM Microbe 2017, 2017.
- Silva, Liliana; Ksiezarek M; Grosso, F.; Peixe, L. "Carbapenem-resistant Acinetobacter baumannii in Portugal - clonal dynamics
explained by WGS". Paper presented in MICROBIOTEC17 - Congress of Microbiology and Biotechnology 2017, 2017.
- Silva, Liliana; Ksiezarek M; Grosso, F.; Peixe, L. "Explaining the carbapenem-resistant Acinetobacter baumannii lineages dynamics
by whole-genome and phenotypic analyses". Paper presented in Acinetobacter 2017 - 11th International Symposium on the biology
of Acinetobacter, 2017.
- Silva, Liliana; Mourão, Joana; Ksiezarek M; Sousa C.; Grosso, F.; Peixe, L. "OXA-23 and OXA-58-encoding plasmids in emerging
carbapenem-resistant Acinetobacter pittii". Paper presented in American Society for Microbiology, ASM Microbe 2017,
2017.
- Ana R. Freitas; Novais, Carla; Read, Antónia; Alves, Valquíria; Luísa Maria Vieira Peixe. "Emergence of linezolid-resistant
Enterococcus faecium in Portugal: a patient co-infected with three ST117 isolates with variable antibiotic resistance profiles".
Paper presented in 26th European Congress of Clinical Microbiology and Infectious Diseases (ECCMID), Amsterdam, 2016.
- Silva, Liliana; Rodrigues C.; Sousa, C.; Lira A.; Leão M.; Mota M.; Lopes P.; et al. "Real-time identification of carbapenem-resistant
Klebsiella pneumoniae outbreak isolates by Fourier transform infrared (FTIR) spectroscopy". Paper presented in Science
and Technology in Portugal Meeting, Ciência 2016, 2016.
- Freitas, Ana R; Sousa, C.; Bavlovic J; Silva, Liliana; Novais, Carla; Coque TM; Lopes, J.; Peixe, L. "Discrimination of vancomycin-resistant
Enterococcus faecium clones by MLST (EBURST/BAPS) and spectroscopic techniques (MALDI-TOF and FTIR-ATR)". Paper presented
in 11th International Meeting on Microbial Epidemiological Markers, IMMEM 2016, 2016.
- Mabrouk A; Grosso, F.; Silva, Liliana; Sousa, C.; Achour W; Hassen AB; Peixe, L. "Characterization of uncommon clones of carbapenemase-producing
Acinetobacter baumannii from nosocomial settings in Tunis (Tunisia)". Paper presented in 11th International Meeting on
Microbial Epidemiological Markers, IMMEM 2016, 2016.
- Botelho, João; Grosso, F; Rocha, C; Brilhante, M; Sousa, Clara; Peixe, L. Corresponding author: Botelho, João. "High-risk
clones among carbapenemase-producing Pseudomonas aeruginosa in a Portuguese hospital". Paper presented in 25th European
Congress of Clinical Microbiology and Infectious Diseases (ECCMID), 2015.
- Silva, Liliana; Grosso, F.; Gonçalves Ribeiro T; Branquinho R; Sousa, C.; Peixe, L. "Environmental reservoirs of Acinetobacter
producing carbapenem-hydrolysing class D-ß-lactamases in Angola with evidence of human exposure". Paper presented in European
Congress of Clinical Microbiology and Infectious Diseases, ECCMID 2015, 2015.
- Silva, Liliana; Grosso F.; Gonçalves Ribeiro T; Branquinho R; Sousa, C.; Peixe, L. "Diversity of non-clinical Acinetobacter
species in a sub-saharan Africa region: evidence of carbapenem-hydrolysing class D-ß-lactamase producers". Paper presented
in 14º Congresso Nacional de Microbiologia e Biotecnologia, MICROBIOTEC14, 2015.
- Pires, J; Novais, Ângela; Silva, Liliana; Campos, Joana; Botelho, João; Czobor, I; Gheorghe, I; Peixe, L. "Further validation
of Blue-Carba, a recently described quick and reliable method for carbapenemase detection". Paper presented in 24th European
Congress of Clinical Microbiology and Infectious Diseases (ECCMID), 2014.
- Sousa, Clara; Botelho, João; Silva, Liliana; Grosso, F; Lopes, João; Peixe, L. "MALDI-TOF MS and FTIR-ATR: Different Biomolecules
and Distinct Outputs in Acinetobacter baumannii Typing". Paper presented in 24th European Congress of Clinical Microbiology
and Infectious Diseases (ECCMID), 2014.
- Grosso, F.; Quinteira S.; Sousa, C.; Silva, Liliana; Ramos H.; Peixe, L. "IMP-5-producing multidrug- resistant Acinetobacter
bereziniae: environmental or pathogen?". Paper presented in European Congress of Clinical Microbiology and Infectious Diseases,
ECCMID2014, 2014.
- Silva, Liliana; Grosso, F.; Ramos H.; Sousa, C.; Peixe, L. "First description of Acinetobacter pittii clinical isolates harboring
blaOXA-58 and blaOXA-23 in Portugal". Paper presented in European Congress of Clinical Microbiology and Infectious Diseases,
ECCMID2014, 2014.
- Botelho, João; Sousa, Clara; Silva, Liliana; Grosso, F; Nemec, A.; Lopes, João; Peixe, L. Corresponding author: Botelho, João.
"Acinetobacter calcoaceticus-Acinetobacter baumannii complex species depicted by MALDI-TOF MS and multivariate data analysis".
Paper presented in MicroBiotec 13, 2013.
- Sousa, Clara; Botelho, João; Silva, Liliana; Grosso, F; Nemec, A.; Lopes, João; Peixe, L. "Improvement on the discrimination
of the Acinetobacter calcoaceticus-Acinetobacter baumannii complex species by a combined MALDI-TOF MS and chemometric approach".
Paper presented in 10th International Meeting on Microbial Epidemiological Markers (IMMEM-10), 2013.
- Sousa, C.; Botelho J.; Silva, Liliana; Grosso, F.; Nemec, Alexandr; Lopes A.; Peixe, L. "Improvement on the discrimination
of the Acinetobacter calcoaceticus-Acinetobacter baumannii complex species Curriculum Vitae ¿ Liliana Silva 16 Curriculum
Vitae ¿ Liliana Silva by a combined MALDI-TOF MS and chemometric approach". Paper presented in 10th International Meeting
on Microbial Epidemiological Markers (IMMEM-10), 2013.
- Sousa, C.; Silva, Liliana; Grosso, F.; Lopes, J.; Peixe, L. "Fast Identification of clinically relevant Acinetobacter baumannii
clones by Fourier Transform Infrared Spectroscopy". Paper presented in Acinetobacter 2013, 2013.
- Sousa, C.; Silva, Liliana; Alexandr Nemec; Lopes, J.; Peixe, L. "Rapid and accurate identification of the species of Acinetobacter
calcoaceticus-Acinetobacter baumannii complex spp. by Fourier Transform Infrared Spectroscopy (FTIR)". Paper presented in
European Congress of Clinical Microbiology and Infectious Diseases, ECCMID2013, 2013.
- Silva, Liliana; Sousa, C.; Grosso, F.; Peixe, L. "First description of Acinetobacter pittii clinical isolates harboring blaOXA-58
and blaOXA-23 in a Portuguese Hospital". Paper presented in 13º Congresso Nacional de Microbiologia e Biotecnologia, MICROBIOTEC13,
2013.
- Antunes, Patrícia; Mourão, Joana; Novais, Carla; Peixe, L. "Occurrence of pcoD, a gene conferring copper resistance in multidrug
resistant Salmonella". Paper presented in 4th FEMS Congress of European Microbiologists, 2011.
|
Journal article |
- Mourão, Joana; Magalhães, Mafalda; Ribeiro-Almeida, M; Rebelo, Andreia; Novais, Carla; Peixe, L; Novais, Ângela; Antunes,
Patrícia. "Decoding Klebsiella pneumoniae in Poultry Chain: Unveiling Genetic Landscape, Antibiotic Resistance, and Biocide
Tolerance in Non-Clinical Reservoirs". Frontiers in Microbiology (2024): https://doi.org/10.3389/fmicb.2024.1365011.
In press • https://doi.org/10.3389/fmicb.2024.1365011
- Ribeiro-Almeida, M; Mourão, Joana; Magalhães, Mafalda; Freitas, Ana R; Novais, Carla; Peixe, L; Antunes, Patrícia. "Raw meat-based
diet for pets: a neglected source of human exposure to Salmonella and mcr-carrying Escherichia coli in Europe". Eurosurveillance
(2024):
In press
- Márcia Sousa; Magdalena Ksiezarek; Svetlana Ugarcina Perovic; Tiago Antunes-Lopes; Filipa Grosso; Teresa Gonçalves Ribeiro;
Luísa Peixe. "Gardnerella pickettii sp. nov. (formerly Gardnerella genomic species 3) and Gardnerella greenwoodii sp. nov.
(formerly Gardnerella genomic species 8) isolated from female urinary microbiome". International Journal of Systematic
and Evolutionary Microbiology (2023): https://doi.org/10.1099/ijsem.0.006140.
10.1099/ijsem.0.006140
- Andreia Rebelo; Agostinho Almeida; Luísa Peixe; Patrícia Antunes; Carla Novais. "Unraveling the Role of Metals and Organic
Acids in Bacterial Antimicrobial Resistance in the Food Chain". Antibiotics (2023): https://doi.org/10.3390/antibiotics12091474.
10.3390/antibiotics12091474
- Joana Mourão; Marisa Ribeiro-Almeida; Carla Novais; Mafalda Magalhães; Andreia Rebelo; Sofia Ribeiro; Luísa Peixe; et al.
"From Farm to Fork: Persistence of Clinically Relevant Multidrug-Resistant and Copper-Tolerant Klebsiella pneumoniae Long
after Colistin Withdrawal in Poultry Production". Microbiology Spectrum (2023): https://doi.org/10.1128/spectrum.01386-23.
10.1128/spectrum.01386-23
- Carla Rodrigues; Val F. Lanza; Luísa Peixe; Teresa M. Coque; Ângela Novais; Ruth M. Hall. "Phylogenomics of Globally Spread
Clonal Groups 14 and 15 of Klebsiella pneumoniae". Microbiology Spectrum (2023): https://doi.org/10.1128/spectrum.03395-22.
10.1128/spectrum.03395-22
- João Pedro Rueda Furlan; Teresa Gonçalves Ribeiro; Ângela Novais; Hamilton Cabral; Luísa Peixe; Eliana Guedes Stehling. "Citrobacter
meridianamericanus sp. nov., isolated from a soil sample". International Journal of Systematic and Evolutionary Microbiology
(2023): https://doi.org/10.1099/ijsem.0.005720.
10.1099/ijsem.0.005720
- Elisabete Alves Cappelli; Magdalena Ksiezarek; Jacqueline Wolf; Meina Neumann-Schaal; Teresa Gonçalves Ribeiro; Luísa Peixe.
"Expanding the Bacterial Diversity of the Female Urinary Microbiome: Description of Eight New Corynebacterium Species". Microorganisms
(2023): https://doi.org/10.3390/microorganisms11020388.
10.3390/microorganisms11020388
- Miguel Peixoto de Almeida; Carla Rodrigues; Ângela Novais; Filipa Grosso; Nicolae Leopold; Luísa Peixe; Ricardo Franco; Eulália
Pereira. "Silver Nanostar-Based SERS for the Discrimination of Clinically Relevant Acinetobacter baumannii and Klebsiella
pneumoniae Species and Clones". Biosensors (2023): https://doi.org/10.3390/bios13020149.
10.3390/bios13020149
- Luísa Peixe; Carla Novais; Ana C. Almeida-Santos; Ana Paula Pereira; Andreia Rebelo; Ana R. Freitas. "Alert for molecular
data interpretation when using Enterococcus faecium reference strains reclassified as Enterococcus lactis". Gene 851
(2023): 146951-146951. http://dx.doi.org/10.1016/j.gene.2022.146951.
10.1016/j.gene.2022.146951
- Mireya Viviana Belloso Daza; Ana C. Almeida-Santos; Carla Novais; Antónia Read; Valquíria Alves; Pier Sandro Cocconcelli;
Ana R. Freitas; Luísa Peixe. "Distinction between Enterococcus faecium and Enterococcus lactis by a gluP PCR-Based Assay for
Accurate Identification and Diagnostics". Microbiology Spectrum (2022): https://doi.org/10.1128/spectrum.03268-22.
10.1128/spectrum.03268-22
- Svetlana Ugarcina Perovic; Magdalena Ksiezarek; Joana Rocha; Elisabete Alves Cappelli; Márcia Sousa; Teresa Gonçalves Ribeiro;
Filipa Grosso; Luísa Peixe. Corresponding author: Luísa Peixe. "Urinary Microbiome of Reproductive-Age Asymptomatic European
Women". Microbiology Spectrum (2022): https://doi.org/10.1128/spectrum.01308-22.
10.1128/spectrum.01308-22
- Marisa Ribeiro-Almeida; Joana Mourão; Ângela Novais; Sofia Pereira; Joana Freitas-Silva; Sofia Ribeiro; Paulo Martins da Costa;
Luísa Peixe; Patrícia Antunes. "High diversity of pathogenic
Escherichia coli
clones carrying
mcr-1
among gulls underlines the need for strategies at the environment–livestock–human interface". Environmental Microbiology
24 10 (2022): 4702-4713. http://dx.doi.org/10.1111/1462-2920.16111.
10.1111/1462-2920.16111
- Furlan, J.P.R.; Eliana Guedes Stehling; Eduardo Angelino Savazzi; Luísa Peixe; Ângela Novais. "High occurrence of colistin-
and multidrug-resistant strains carrying mcr-1 or an underestimated mcr-1.26 allelic variant along a large Brazilian river".
Journal of Global Antimicrobial Resistance 30 (2022): 127-129. http://dx.doi.org/10.1016/j.jgar.2022.05.030.
10.1016/j.jgar.2022.05.030
- Ana P. Pereira; Patrícia Antunes; Rob Willems; Jukka Corander; Teresa M. Coque; Luísa Peixe; Ana R. Freitas; Carla Novais.
"Evolution of Chlorhexidine Susceptibility and of the EfrEF Operon among Enterococcus faecalis from Diverse Environments,
Clones, and Time Spans". Microbiology Spectrum 10 4 (2022): http://dx.doi.org/10.1128/spectrum.01176-22.
10.1128/spectrum.01176-22
- Inês Martins-Oliveira; Blanca Pérez Viso; Ana Silva-Dias; Rosário Gomes; Luísa Peixe; Ângela Novais; Rafael Canton; Cidália
Pina-Vaz. "Rapid Detection of Plasmid AmpC Beta-Lactamases by a Flow Cytometry Assay". Antibiotics 11 8 (2022): 1130-1130.
http://dx.doi.org/10.3390/antibiotics11081130.
10.3390/antibiotics11081130
- Magdalena Ksiezarek; Filipa Grosso; Teresa Gonçalves Ribeiro; Luísa Peixe. Corresponding author: Luísa Peixe. "Genomic diversity
of genus Limosilactobacillus". Microbial Genomics (2022): https://doi.org/10.1099/mgen.0.000847.
10.1099/mgen.0.000847
- Kostas Koutsoumanis; Ana Allende; Avelino Alvarez-Ordóñez; Declan Bolton; Sara Bover-Cid; Marianne Chemaly; Robert Davies;
et al. "Update of the list of QPS-recommended microbiological agents intentionally added to food or feed as notified to EFSA
16: suitability of taxonomic units notified to EFSA until March 2022". EFSA Journal (2022): https://data.europa.eu/doi/10.2903/j.efsa.2022.7408.
10.2903/j.efsa.2022.7408
- Claude Lambré; José Manuel Barat Baviera; Claudia Bolognesi; Andrew Chesson; Pier Sandro Cocconcelli; Riccardo Crebelli; David
Michael Gott; et al. "Evaluation of the safety and efficacy of lactic acid to reduce microbiological surface contamination
on carcases from kangaroos, wild pigs, goats and sheep". EFSA Journal (2022): https://data.europa.eu/doi/10.2903/j.efsa.2022.7265.
10.2903/j.efsa.2022.7265
- Ana R. Freitas; Ana P. Tedim; Ana Almeida Santos; Bárbara Duarte; Houyem Elghaieb; Mohamed Salah Abbassi; Abdennaceur Hassen;
Carla Novais; Luísa Peixe. "High-Resolution Genotyping Unveils Identical Ampicillin-Resistant Enterococcus faecium
Strains in Different Sources and Countries: A One Health Approach". Microorganisms (2022): https://www.mdpi.com/2076-2607/10/3/632.
10.3390/microorganisms10030632
- Konstantinos Koutsoumanis; Avelino Alvarez-Ordóñez; Declan Bolton; Sara Bover-Cid; Marianne Chemaly; Robert Davies; Alessandra
De Cesare; et al. "The efficacy and safety of high-pressure processing of food". EFSA Journal (2022): https://data.europa.eu/doi/10.2903/j.efsa.2022.7128.
10.2903/j.efsa.2022.7128
- Ângela Novais; Rita Veiga Ferraz; Mariana Viana; Paula Martins da Costa; Luísa Peixe. "NDM-1 Introduction in Portugal through
a ST11 KL105 Klebsiella pneumoniae Widespread in Europe". Antibiotics (2022): https://doi.org/10.3390/antibiotics11010092.
10.3390/antibiotics11010092
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et al. "Update of the list of QPS-recommended biological agents intentionally added to food or feed as notified to EFSA 15:
suitability of taxonomic units notified to EFSA until September 2021". EFSA Journal (2022): https://data.europa.eu/doi/10.2903/j.efsa.2022.7045.
10.2903/j.efsa.2022.7045
- Magdalena Ksiezarek; Ângela Novais; Luísa Peixe. "The Darkest Place Is under the Candlestick-Healthy Urogenital Tract as a
Source of Worldwide Disseminated Extraintestinal Pathogenic Escherichia coli Lineages". Microorganisms (2021): https://doi.org/10.3390/microorganisms10010027.
10.3390/microorganisms10010027
- Sofia Ribeiro; Joana Mourão; Ângela Novais; Joana Campos; Luísa Peixe; Patrícia Antunes. "From farm to fork: Colistin voluntary
withdrawal in Portuguese farms reflected in decreasing occurrence of mcr-1- carrying Enterobacteriaceae from chicken meat".
Environmental Microbiology (2021): https://doi.org/10.1111/1462-2920.15689.
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in Category 2 and 3 animal by-products and derived products to be used as organic fertilisers and/or soil improvers". EFSA
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- Finisterra, Liliana; Duarte, Bárbara; Peixe, Luísa; Novais, Carla; Freitas, Ana R.. "Industrial dog food is a vehicle of multidrug-resistant
enterococci carrying virulence genes often linked to human infections". International Journal of Food Microbiology
358 (2021): 109284. http://dx.doi.org/10.1016/j.ijfoodmicro.2021.109284.
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- Ana C. Almeida-Santos; Carla Novais; Luísa Peixe; Ana R. Freitas. "Enterococcus spp. as a Producer and Target of Bacteriocins:
A Double-Edged Sword in the Antimicrobial Resistance Crisis Context". Antibiotics 10 10 (2021): 1215-1215. https://doi.org/10.3390/antibiotics10101215.
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EFSA Journal (2021): https://data.europa.eu/doi/10.2903/j.efsa.2021.6854.
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Journal of Antimicrobial Chemotherapy 76 11 (2021): 2757-2764. http://dx.doi.org/10.1093/jac/dkab249.
10.1093/jac/dkab249
- Freitas, Ana R.; Finisterra, Liliana; Tedim, Ana P.; Duarte, Bárbara; Novais, Carla; Peixe, Luísa. "Linezolid- and Multidrug-Resistant
Enterococci in Raw Commercial Dog Food, Europe, 2019–2020". Emerging Infectious Diseases 27 8 (2021): 2221-2224. http://dx.doi.org/10.3201/eid2708.204933.
10.3201/eid2708.204933
- Kostas Koutsoumanis; Ana Allende; Avelino Alvarez-Ordóñez; Declan Bolton; Sara Bover-Cid; Marianne Chemaly; Robert Davies;
et al. "Update of the list of QPS-recommended biological agents intentionally added to food or feed as notified to EFSA 14:
suitability of taxonomic units notified to EFSA until March 2021". EFSA Journal (2021): https://data.europa.eu/doi/10.2903/j.efsa.2021.6689.
10.2903/j.efsa.2021.6689
- Konstantinos Koutsoumanis; Ana Allende; Avelino Álvarez-Ordóñez; Declan Bolton; Sara Bover-Cid; Marianne Chemaly; Robert Davies;
et al. "Role played by the environment in the emergence and spread of antimicrobial resistance (AMR) through the food chain".
EFSA Journal (2021): https://data.europa.eu/doi/10.2903/j.efsa.2021.6651.
10.2903/j.efsa.2021.6651
- Konstantinos Koutsoumanis; Ana Allende; Avelino Alvarez-Ordóñez; Declan Bolton; Sara Bover-Cid; Marianne Chemaly; Robert Davies;
et al. "Guidance on date marking and related food information: part 2 (food information)". EFSA Journal (2021): https://data.europa.eu/doi/10.2903/j.efsa.2021.6510.
10.2903/j.efsa.2021.6510
- Konstantinos Koutsoumanis; Ana Allende; Declan Bolton; Sara Bover-Cid; Marianne Chemaly; Robert Davies; Alessandra De Cesare;
et al. "Evaluation of the application for new alternative biodiesel production process for rendered fat including Category
1 animal by-products (BDI-RepCat® process, AT)". EFSA Journal (2021): https://data.europa.eu/doi/10.2903/j.efsa.2021.6511.
10.2903/j.efsa.2021.6511
- Pöntinen, Anna K.; Top, Janetta; Arredondo-Alonso, Sergio; Tonkin-Hill, Gerry; Freitas, Ana R.; Novais, Carla; Gladstone,
Rebecca A.; et al. "Apparent nosocomial adaptation of Enterococcus faecalis predates the modern hospital era". Nature Communications
12 1 (2021): http://dx.doi.org/10.1038/s41467-021-21749-5.
10.1038/s41467-021-21749-5
- Ksiezarek, Magdalena; Ribeiro, Teresa Gonçalves; Rocha, Joana; Grosso, Filipa; Perovic, Svetlana Ugarcina; Peixe, Luisa. "Limosilactobacillus
urinaemulieris sp. nov. and Limosilactobacillus portuensis sp. nov. isolated from urine of healthy women". International
Journal of Systematic and Evolutionary Microbiology (2021): http://dx.doi.org/10.1099/ijsem.0.004726.
Published • 10.1099/ijsem.0.004726
- Ksiezarek, Magdalena; Ugarcina-Perovic, Svetlana; Rocha, Joana; Grosso, Filipa; Peixe, Luísa. "Long-term stability of the
urogenital microbiota of asymptomatic European women". BMC Microbiology 21 1 (2021): http://dx.doi.org/10.1186/s12866-021-02123-3.
Published • 10.1186/s12866-021-02123-3
- Antunes, Patrícia; Novais, Carla; Novais, Ângela; Grosso, Filipa; Ribeiro, Teresa G; Mourão, Joana; Perovic, Svetlana; et
al. "MicroMundo@UPorto: an experimental microbiology project fostering student's antimicrobial resistance awareness and personal
and social development". FEMS Microbiology Letters (2021): http://dx.doi.org/10.1093/femsle/fnab016.
Published • 10.1093/femsle/fnab016
- Freitas, Ana R.; Pereira, Ana P.; Novais, Carla; Peixe, Luísa. "Multidrug-resistant high-risk Enterococcus faecium clones:
can we really define them?". International Journal of Antimicrobial Agents 57 1 (2021): 106227. http://dx.doi.org/10.1016/j.ijantimicag.2020.106227.
Published • 10.1016/j.ijantimicag.2020.106227
- Koutsoumanis, Kostas; Allende, Ana; Alvarez-Ordóñez, Avelino; Bolton, Declan; Bover-Cid, Sara; Chemaly, Marianne; Davies,
Robert; et al. "Update of the list of QPS-recommended biological agents intentionally added to food or feed as notified to
EFSA 13: suitability of taxonomic units notified to EFSA until September 2020". EFSA Journal 19 1 (2021): http://dx.doi.org/10.2903/j.efsa.2021.6377.
Published • 10.2903/j.efsa.2021.6377
- Konstantinos Koutsoumanis; Ana Allende; Avelino Alvarez-Ordóñez; Declan Bolton; Marianne Chemaly; Robert Davies; Alessandra
De Cesare; et al. "The use of the so-called ‘superchilling’ technique for the transport of fresh fishery products". EFSA
Journal (2021): https://data.europa.eu/doi/10.2903/j.efsa.2021.6378.
10.2903/j.efsa.2021.6378
- Freitas, Ana R; Pereira, AP; Novais, C; Peixe, L. "Multidrug-resistant high-risk Enterococcus faecium clones: can we really
define them? Review". International Journal of Antimicrobial Agents 57 1 (2021): 106227. https://www.sciencedirect.com/science/article/abs/pii/S0924857920304386?via%3Dihub.
Published
- Konstantinos Koutsoumanis; Ana Allende; Avelino Alvarez-Ordóñez; Declan Bolton; Sara Bover-Cid; Marianne Chemaly; Robert Davies;
et al. "Guidance on date marking and related food information: part 1 (date marking)". EFSA Journal (2020): https://data.europa.eu/doi/10.2903/j.efsa.2020.6306.
10.2903/j.efsa.2020.6306
- Konstantinos Koutsoumanis; Ana Allende; Avelino Alvarez-Ordóñez; Declan Bolton; Sara Bover-Cid; Marianne Chemaly; Robert Davies;
et al. "Evaluation of public and animal health risks in case of a delayed post-mortem inspection in ungulates". EFSA Journal
(2020): https://data.europa.eu/doi/10.2903/j.efsa.2020.6307.
10.2903/j.efsa.2020.6307
- Guerra, Ana Margarida; Lira, Agostinho; Lameirão, Angelina; Selaru, Aurélia; Abreu, Gabriela; Lopes, Paulo; Mota, Margarida;
Novais, Ângela; Peixe, Luísa. "Multiplicity of Carbapenemase-Producers Three Years after a KPC-3-Producing K. pneumoniae ST147-K64
Hospital Outbreak". Antibiotics 9 11 (2020): 806. http://dx.doi.org/10.3390/antibiotics9110806.
Published • 10.3390/antibiotics9110806
- Silva, Liliana; Grosso, Filipa; Rodrigues, Carla; Ksiezarek, Magdalena; Ramos, Helena; Peixe, Luísa. "The success of particular
Acinetobacter baumannii clones: accumulating resistance and virulence inside a sugary shield". Journal of Antimicrobial
Chemotherapy 76 2 (2020): 305-311. http://dx.doi.org/10.1093/jac/dkaa453.
10.1093/jac/dkaa453
- Konstantinos Koutsoumanis; Ana Allende; Declan Joseph Bolton; Sara Bover-Cid; Marianne Chemaly; Robert Davies; Alessandra
De Cesare; et al. "Potential BSE risk posed by the use of ruminant collagen and gelatine in feed for non-ruminant farmed animals".
EFSA Journal (2020): https://data.europa.eu/doi/10.2903/j.efsa.2020.6267.
10.2903/j.efsa.2020.6267
- Mourão, Joana; Rebelo, Andreia; Ribeiro, Sofia; Peixe, Luísa; Novais, Carla; Antunes, Patrícia. "Atypical Non-H2S-Producing
Monophasic Salmonella Typhimurium ST3478 Strains from Chicken Meat at Processing Stage Are Adapted to Diverse Stresses". Pathogens
9 9 (2020): 701. http://dx.doi.org/10.3390/pathogens9090701.
10.3390/pathogens9090701
- Botelho, João; Mourão, Joana; Roberts, Adam P.; Peixe, Luísa. "Comprehensive genome data analysis establishes a triple whammy
of carbapenemases, ICEs and multiple clinically relevant bacteria". Microbial Genomics (2020): http://dx.doi.org/10.1099/mgen.0.000424.
10.1099/mgen.0.000424
- Ribeiro, Teresa Gonçalves; Izdebski, Radoslaw; Urbanowicz, Pawel; Carmeli, Yehuda; Gniadkowski, Marek; Peixe, Luísa. "Citrobacter
telavivum sp. nov. with chromosomal mcr-9 from hospitalized patients". European Journal of Clinical Microbiology & Infectious
Diseases (2020): http://dx.doi.org/10.1007/s10096-020-04003-6.
10.1007/s10096-020-04003-6
- Koutsoumanis, Konstantinos; Allende, Ana; Bolton, Declan Joseph; Bover-Cid, Sara; Chemaly, Marianne; Davies, Robert; De Cesare,
Alessandra; et al. "Evaluation of Alternative Methods of Tunnel Composting (submitted by the European Composting Network)".
EFSA Journal 18 8 (2020): http://dx.doi.org/10.2903/j.efsa.2020.6226.
10.2903/j.efsa.2020.6226
- Silva, Liliana; Rodrigues, Carla; Lira, Agostinho; Leão, Mariana; Mota, Margarida; Lopes, Paulo; Novais, Ângela; Peixe, Luísa.
"Fourier transform infrared (FT-IR) spectroscopy typing: a real-time analysis of an outbreak by carbapenem-resistant Klebsiella
pneumoniae". European Journal of Clinical Microbiology & Infectious Diseases (2020): http://dx.doi.org/10.1007/s10096-020-03956-y.
10.1007/s10096-020-03956-y
- Freitas, Ana R; Tedim, Ana P; Duarte, Bárbara; Elghaieb, Houyem; Abbassi, Mohamed S; Hassen, Abdennaceur; Read, Antónia; et
al. "Linezolid-resistant (Tn6246::fexB-poxtA) Enterococcus faecium strains colonizing humans and bovines on different continents:
similarity without epidemiological link". Journal of Antimicrobial Chemotherapy 75 9 (2020): 2416-2423. http://dx.doi.org/10.1093/jac/dkaa227.
10.1093/jac/dkaa227
- Koutsoumanis, Kostas; Allende, Ana; Alvarez-Ordóñez, Avelino; Bolton, Declan; Bover-Cid, Sara; Chemaly, Marianne; Davies,
Robert; et al. "Update of the list of QPS-recommended biological agents intentionally added to food or feed as notified to
EFSA 12: suitability of taxonomic units notified to EFSA until March 2020". EFSA Journal 18 7 (2020): http://dx.doi.org/10.2903/j.efsa.2020.6174.
10.2903/j.efsa.2020.6174
- Ribeiro, Teresa Gonçalves; Rocha, Joana; Ksiezarek, Magdalena; Perovic, Svetlana Ugarcina; Grosso, Filipa; Peixe, Luísa. "The
status of the species Lactobacillus fornicalis Dicks et al. 2000. Request for an opinion". International Journal of Systematic
and Evolutionary Microbiology 70 6 (2020): 3953-3954. http://dx.doi.org/10.1099/ijsem.0.004259.
10.1099/ijsem.0.004259
- Mourão, Joana; Rebelo, Andreia; Ribeiro, Sofia; Peixe, Luísa; Novais, Carla; Antunes, Patrícia. "Tolerance to arsenic contaminant
among multidrug-resistant and copper-tolerant
Salmonella
successful clones is associated with diverse
ars
operons and genetic contexts". Environmental Microbiology 22 7 (2020): 2829-2842. http://dx.doi.org/10.1111/1462-2920.15016.
10.1111/1462-2920.15016
- Gonçalves Ribeiro, Teresa; Novais, Ângela; Machado, Elisabete; Peixe, Luísa. "Acquired AmpC ß-Lactamases among Enterobacteriaceae
from Healthy Humans and Animals, Food, Aquatic and Trout Aquaculture Environments in Portugal". Pathogens 9 4 (2020):
273. http://dx.doi.org/10.3390/pathogens9040273.
10.3390/pathogens9040273
- Koutsoumanis, Konstantinos; Alvarez-Ordóñez, Avelino; Bolton, Declan; Bover-Cid, Sara; Chemaly, Marianne; Davies, Robert;
De Cesare, Alessandra; et al. "The public health risk posed by Listeria monocytogenes in frozen fruit and vegetables including
herbs, blanched during processing". EFSA Journal 18 4 (2020): http://dx.doi.org/10.2903/j.efsa.2020.6092.
10.2903/j.efsa.2020.6092
- Koutsoumanis, Konstantinos; Allende, Ana; Alvarez-Ordóñez, Avelino; Bolton, Declan; Chemaly, Marianne; Davies, Robert; De
Cesare, Alessandra; et al. "The use of the so-called ‘tubs’ for transporting and storing fresh fishery products". EFSA
Journal 18 4 (2020): http://dx.doi.org/10.2903/j.efsa.2020.6091.
10.2903/j.efsa.2020.6091
- Koutsoumanis, Konstantinos; Allende, Ana; Alvarez-Ordóñez, Avelino; Bolton, Declan; Bover-Cid, Sara; Davies, Robert; De Cesare,
Alessandra; et al. "Update and review of control options for Campylobacter in broilers at primary production". EFSA Journal
18 4 (2020): http://dx.doi.org/10.2903/j.efsa.2020.6090.
10.2903/j.efsa.2020.6090
- Koutsoumanis, Konstantinos; Allende, Ana; Bolton, Declan; Bover-Cid, Sara; Chemaly, Marianne; Davies, Robert; De Cesare, Alessandra;
et al. "Evaluation of an alternative method for production of biodiesel from processed fats derived from Category 1, 2 and
3 animal by-products (submitted by College Proteins)". EFSA Journal 18 4 (2020): http://dx.doi.org/10.2903/j.efsa.2020.6089.
10.2903/j.efsa.2020.6089
- Rodrigues, Carla; Sousa, Clara; Lopes, João A.; Novais, Ângela; Peixe, Luísa. "A Front Line on Klebsiella pneumoniae Capsular
Polysaccharide Knowledge: Fourier Transform Infrared Spectroscopy as an Accurate and Fast Typing Tool". mSystems 5
2 (2020): http://dx.doi.org/10.1128/msystems.00386-19.
10.1128/msystems.00386-19
- Freitas, Ana R.; Tedim, Ana P.; Novais, Carla; Lanza, Val F.; Peixe, Luísa. "Comparative genomics of global optrA-carrying
Enterococcus faecalis uncovers a common chromosomal hotspot for optrA acquisition within a diversity of core and accessory
genomes". Microbial Genomics (2020): http://dx.doi.org/10.1099/mgen.0.000350.
10.1099/mgen.0.000350
- Rocha, Joana; Botelho, João; Ksiezarek, Magdalena; Perovic, Svetlana Ugarcina; Machado, Miguel; Carriço, João André; Pimentel,
Lígia L.; et al. "Lactobacillus mulieris sp. nov., a new species of Lactobacillus delbrueckii group". International Journal
of Systematic and Evolutionary Microbiology 70 3 (2020): 1522-1527. http://dx.doi.org/10.1099/ijsem.0.003901.
10.1099/ijsem.0.003901
- de Oliveira, Emília S.; Freitas, Ana R.; Peixe, Luísa; Novais, Carla; Melo, M. Celeste. "Silent clonal spread of vancomycin-resistant
Enterococcus faecalis ST6 and ST525 colonizing patients at hospital admission in Natal, Brazil". Infection Control & Hospital
Epidemiology (2020): 1-3. http://dx.doi.org/10.1017/ice.2020.24.
10.1017/ice.2020.24
- Loras, Cristina; Mendes, Ana Constança; Peixe, Luisa; Novais, Ângela; Alós, Juan-Ignacio. "Escherichia coli resistant to fosfomycin
from urinary tract infections: Detection of the fosA3 gene in Spain". Journal of Global Antimicrobial Resistance (2020):
http://dx.doi.org/10.1016/j.jgar.2020.01.023.
10.1016/j.jgar.2020.01.023
- Koutsoumanis, Kostas; Allende, Ana; Alvarez-Ordóñez, Avelino; Bolton, Declan; Bover-Cid, Sara; Chemaly, Marianne; Davies,
Robert; et al. "Scientific Opinion on the update of the list of QPS-recommended biological agents intentionally added to food
or feed as notified to EFSA (2017–2019)". EFSA Journal 18 2 (2020): http://dx.doi.org/10.2903/j.efsa.2020.5966.
10.2903/j.efsa.2020.5966
- Koutsoumanis, Kostas; Allende, Ana; Alvarez-Ordóñez, Avelino; Bolton, Declan; Bover-Cid, Sara; Chemaly, Marianne; Davies,
Robert; et al. "Update of the list of QPS-recommended biological agents intentionally added to food or feed as notified to
EFSA 11: suitability of taxonomic units notified to EFSA until September 2019". EFSA Journal 18 2 (2020): http://dx.doi.org/10.2903/j.efsa.2020.5965.
10.2903/j.efsa.2020.5965
- Antunes, Patrícia; Novais, Carla; Peixe, Luísa. "Food-to-Humans Bacterial Transmission". Microbiology Spectrum 8 1
(2020): http://dx.doi.org/10.1128/microbiolspec.mtbp-0019-2016.
10.1128/microbiolspec.mtbp-0019-2016
- Novais, Carla; Freitas, AR; León-Sampedro, R; Peixe, L; Coque, TM; Novais, Carla; Freitas, Ana R.; et al. "Methods to Quantify
DNA Transfer in Enterococcus". Methods in Molecular Biology 2075 (2020): 111-122. http://dx.doi.org/10.1007/978-1-4939-9877-7_8.
Published • 10.1007/978-1-4939-9877-7_8
- Monárrez, Rubén; Braun, Molly; Coburn-Flynn, Olivia; Botelho, João; Odetoyin, Babatunde W.; Otero-Vera, Jose I.; Quartey,
Naa Kwarley Eyiram; et al. "A large self-transmissible resistance plasmid from Nigeria contains genes that ameliorate a carrying
cost". Scientific Reports 9 1 (2019): http://dx.doi.org/10.1038/s41598-019-56064-z.
10.1038/s41598-019-56064-z
- Kostas Koutsoumanis; Ana Allende; Avelino Alvarez-Ordóñez; Declan Bolton; Sara Bover-Cid; Marianne Chemaly; Robert Davies;
et al. "Whole genome sequencing and metagenomics for outbreak investigation, source attribution and risk assessment of food-borne
microorganisms". EFSA Journal (2019): https://data.europa.eu/doi/10.2903/j.efsa.2019.5898.
10.2903/j.efsa.2019.5898
- Koutsoumanis, Kostas; Allende, Ana; Alvarez-Ordonez, Avelino; Bolton, Declan; Bover-Cid, Sara; Chemaly, Marianne; Davies,
Robert; et al. "Update on chronic wasting disease (CWD) III". EFSA Journal 17 11 (2019): http://dx.doi.org/10.2903/j.efsa.2019.5863.
10.2903/j.efsa.2019.5863
- Freitas, Ana R; Novais, Carla; Coque, Teresa M; Peixe, Luísa. "Comment on: Emergence of plasmid-mediated oxazolidinone resistance
gene poxtA from CC17 Enterococcus faecium of pig origin". Journal of Antimicrobial Chemotherapy 75 5 (2019): 1358-1359.
http://dx.doi.org/10.1093/jac/dkz432.
10.1093/jac/dkz432
- Elghaieb, Houyem; Tedim, Ana P; Abbassi, Mohamed S; Novais, Carla; Duarte, Bárbara; Hassen, Abdennaceur; Peixe, Luísa; Freitas,
Ana R. "From farm to fork: identical clones and Tn6674-like elements in linezolid-resistant Enterococcus faecalis from food-producing
animals and retail meat". Journal of Antimicrobial Chemotherapy 75 1 (2019): 30-35. http://dx.doi.org/10.1093/jac/dkz419.
10.1093/jac/dkz419
- Duarte, Bárbara; Pereira, Ana P.; Freitas, Ana R.; Coque, Teresa M.; Hammerum, Anette M.; Hasman, Henrik; Antunes, Patrícia;
Peixe, Luísa; Novais, Carla. "2CS-CHXT Operon Signature of Chlorhexidine Tolerance among Enterococcus faecium Isolates". Applied
and Environmental Microbiology 85 23 (2019): http://dx.doi.org/10.1128/aem.01589-19.
10.1128/aem.01589-19
- Trigo da Roza, Filipa; Couto, Natacha; Carneiro, Carla; Cunha, Eva; Rosa, Teresa; Magalhães, Mariana; Tavares, Luís; et al.
"Commonality of Multidrug-Resistant Klebsiella pneumoniae ST348 Isolates in Horses and Humans in Portugal". Frontiers in
Microbiology 10 (2019): http://dx.doi.org/10.3389/fmicb.2019.01657.
10.3389/fmicb.2019.01657
- León-Sampedro, Ricardo; del Campo, Rosa; Rodriguez-Baños, Mercedes; Lanza, Val F.; Pozuelo, María José; Francés-Cuesta, Carlos;
Tedim, Ana P.; et al. "Phylogenomics of
Enterococcus faecalis
from wild birds: new insights into host-associated differences in core and accessory genomes of the species". Environmental
Microbiology 21 8 (2019): 3046-3062. http://dx.doi.org/10.1111/1462-2920.14702.
10.1111/1462-2920.14702
- Kostas Koutsoumanis; Ana Allende; Avelino Alvarez-Ordóñez; Declan Bolton; Sara Bover-Cid; Marianne Chemaly; Robert Davies;
et al. "Update of the list of QPS-recommended biological agents intentionally added to food or feed as notified to EFSA 10:
Suitability of taxonomic units notified to EFSA until March 2019". EFSA Journal (2019): https://data.europa.eu/doi/10.2903/j.efsa.2019.5753.
10.2903/j.efsa.2019.5753
- Elghaieb, Houyem; Freitas, Ana R; Abbassi, Mohamed Salah; Novais, Carla; Zouari, Mohamed; Hassen, Abdennaceur; Peixe, Luísa.
"Dispersal of linezolid-resistant enterococci carrying poxtA or optrA in retail meat and food-producing animals from Tunisia".
Journal of Antimicrobial Chemotherapy 74 10 (2019): 2865-2869. http://dx.doi.org/10.1093/jac/dkz263.
10.1093/jac/dkz263
- Botelho, João; Grosso, Filipa; Peixe, Luísa. "Antibiotic resistance in Pseudomonas aeruginosa – Mechanisms, epidemiology and
evolution". Drug Resistance Updates 44 (2019): 100640. http://dx.doi.org/10.1016/j.drup.2019.07.002.
10.1016/j.drup.2019.07.002
- Ribeiro, T.G.; Novais, Â.; Rodrigues, C.; Nascimento, R.; Freitas, F.; Machado, E.; Peixe, L.. "Dynamics of clonal and plasmid
backgrounds of Enterobacteriaceae producing acquired AmpC in Portuguese clinical settings over time". International Journal
of Antimicrobial Agents 53 5 (2019): 650-656. http://dx.doi.org/10.1016/j.ijantimicag.2019.03.013.
10.1016/j.ijantimicag.2019.03.013
- Peixe, L. "Multicenter Study of Cronobacter sakazakii Infections in Humans, Europe, 2017.". Emerging infectious diseases
(2019): http://europepmc.org/articles/PMC6390735.
10.3201/eid2503.181652
- Kostas Koutsoumanis; Ana Allende; Avelino Alvarez-Ordóñez; Declan Bolton; Sara Bover-Cid; Marianne Chemaly; Alessandra De
Cesare; et al. "Salmonella control in poultry flocks and its public health impact". EFSA Journal (2019): https://data.europa.eu/doi/10.2903/j.efsa.2019.5596.
10.2903/j.efsa.2019.5596
- Campos, Joana; Mourão, Joana; Peixe, Luísa; Antunes, Patrícia. "Non-typhoidal Salmonella in the Pig Production Chain: A Comprehensive
Analysis of Its Impact on Human Health". Pathogens 8 1 (2019): 19. http://dx.doi.org/10.3390/pathogens8010019.
Published • 10.3390/pathogens8010019
- João Botelho; Cédric Lood; Sally R. Partridge; Vera van Noort; Rob Lavigne; Filipa Grosso; Luísa Peixe. "Combining sequencing
approaches to fully resolve a carbapenemase-encoding megaplasmid in a Pseudomonas shirazica clinical strain". Emerging
Microbes & Infections (2019): https://doi.org/10.1080/22221751.2019.1648182.
10.1080/22221751.2019.1648182
- Kostas Koutsoumanis; Ana Allende; Avelino Álvarez-Ordóñez; Declan Bolton; Sara Bover-Cid; Marianne Chemaly; Robert Davies;
et al. "Update of the list of QPS-recommended biological agents intentionally added to food or feed as notified to EFSA 9:
suitability of taxonomic units notified to EFSA until September 2018". EFSA Journal (2019): https://data.europa.eu/doi/10.2903/j.efsa.2019.5555.
10.2903/j.efsa.2019.5555
- Herman, Lieve; Chemaly, Marianne; Cocconcelli, Pier Sandro; Fernandez, Pablo; Klein, Günter; Peixe, Luisa; Prieto, Miguel;
et al. "The qualified presumption of safety assessment and its role in EFSA risk evaluations: 15 years past". FEMS Microbiology
Letters 366 1 (2018): http://dx.doi.org/10.1093/femsle/fny260.
10.1093/femsle/fny260
- Botelho, João; Roberts, Adam P.; León-Sampedro, Ricardo; Grosso, Filipa; Peixe, Luísa. "Carbapenemases on the move: it’s good
to be on ICEs". Mobile DNA 9 1 (2018): http://dx.doi.org/10.1186/s13100-018-0141-4.
10.1186/s13100-018-0141-4
- Freitas-Silva, Joana; Inácio, Ângela S.; Mourão, Joana; Antunes, Patrícia; Mendes, Ângelo; de Carvalho, André Pinto; Vasconcelos,
Vitor; Peixe, Luísa; da Costa, Paulo Martins. "Occurrence of mcr-1 in Escherichia coli from rabbits of intensive farming".
Veterinary Microbiology 227 (2018): 78-81. http://dx.doi.org/10.1016/j.vetmic.2018.10.020.
10.1016/j.vetmic.2018.10.020
- Vittorio Silano; José Manuel Barat Baviera; Claudia Bolognesi; Beat Johannes Brüschweiler; Andrew Chesson; Pier Sandro Cocconcelli;
Riccardo Crebelli; et al. "Evaluation of the safety and efficacy of the organic acids lactic and acetic acids to reduce microbiological
surface contamination on pork carcasses and pork cuts". EFSA Journal (2018): https://data.europa.eu/doi/10.2903/j.efsa.2018.5482.
10.2903/j.efsa.2018.5482
- Kostas Koutsoumanis; Ana Allende; Avelino Alvarez-Ordóñez; Declan Bolton; Sara Bover-Cid; Marianne Chemaly; Robert Davies;
et al. "Public health risks associated with food-borne parasites". EFSA Journal (2018): https://data.europa.eu/doi/10.2903/j.efsa.2018.5495.
10.2903/j.efsa.2018.5495
- Peixe, L. "Fourier transform infrared spectroscopy: unlocking fundamentals and prospects for bacterial strain typing.". European
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and successful clones". Journal of Antimicrobial Chemotherapy (2018):
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Portugal.". International journal of antimicrobial agents (2017): http://europepmc.org/abstract/med/29175606.
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10.1017/s0950268817002266
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and Salmonella Minnesota in the European Union, 2014-2015.". International journal of antimicrobial agents (2017):
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10.1016/j.ijantimicag.2017.09.006
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10.1099/ijsem.0.002154
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Frequently Causing Infections in Portuguese Clinical Institutions.". Infection control and hospital epidemiology (2017):
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10.1093/jac/dkx143
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Clonality in Acinetobacter baumannii Strains Isolated from Urine Samples and Urinary Catheters in Different European Hospitals.".
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10.1128/aac.00142-17
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with Mobilization of the blaVIM-2-Harboring In58 Integron.". Antimicrobial agents and chemotherapy (2017): http://europepmc.org/abstract/med/28193652.
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countries (1986-2012).". The Journal of antimicrobial chemotherapy (2016): http://europepmc.org/abstract/med/27530756.
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10.1016/j.ijfoodmicro.2015.04.016
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10.1371/journal.pone.0116426
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10.1128/JCM.01634-13
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in diverse Escherichia coli clones from different piggeries.". (2013): http://europepmc.org/abstract/med/23719233.
10.1093/jac/dkt187
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68 12 (2013): 2746-2754. http://www.scopus.com/inward/record.url?eid=2-s2.0-84887534043&partnerID=MN8TOARS.
10.1093/jac/dkt289
- Sousa, C.; Novais, Â.; Magalhães, A.; Lopes, J.; Peixe, L.. "Diverse high-risk B2 and D Escherichia coli clones depicted by
Fourier Transform Infrared Spectroscopy". Scientific Reports 3 (2013): http://www.scopus.com/inward/record.url?eid=2-s2.0-84888265708&partnerID=MN8TOARS.
10.1038/srep03278
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An underestimated vehicle of bacteria and clinically relevant antibiotic resistance genes". International Journal of Food
Microbiology 166 3 (2013): 464-470. http://www.scopus.com/inward/record.url?eid=2-s2.0-84884469629&partnerID=MN8TOARS.
10.1016/j.ijfoodmicro.2013.08.005
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beta-lactamases, integrons, and sul genes in Portugal". Frontiers in Microbiology 4 APR (2013): http://www.scopus.com/inward/record.url?eid=2-s2.0-84884258701&partnerID=MN8TOARS.
10.3389/fmicb.2013.00080
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of enterobacterial isolates producing extended-spectrum ß-lactamases or AmpC ß-lactamases in food and food-producing animals:
An EU perspective of epidemiology, analytical methods, risk factors, and control options". Clinical Infectious Diseases
56 7 (2013): 1030-1037. http://www.scopus.com/inward/record.url?eid=2-s2.0-84875029941&partnerID=MN8TOARS.
10.1093/cid/cis1043
- Novais, Â.; Vuotto, C.; Pires, J.; Montenegro, C.; Donelli, G.; Coque, T.M.; Peixe, L.. "Diversity and biofilm-production
ability among isolates of Escherichia coli phylogroup D belonging to ST69, ST393 and ST405 clonal groups". BMC Microbiology
13 1 (2013): http://www.scopus.com/inward/record.url?eid=2-s2.0-84879096132&partnerID=MN8TOARS.
10.1186/1471-2180-13-144
- Antunes, P.; Mourão, J.; Alves, T.; Campos, J.; Novais, C.; Novais, Â.; Peixe, L.. "Salmonella enterica serotype Bovismorbificans,
a new host for CTX-M-9". International Journal of Antimicrobial Agents 41 1 (2013): 91-93. http://www.scopus.com/inward/record.url?eid=2-s2.0-84871652073&partnerID=MN8TOARS.
10.1016/j.ijantimicag.2012.09.009
- Freitas, A.R.; Novais, C.; Tedim, A.P.; Francia, M.V.; Baquero, F.; Peixe, L.; Coque, T.M.. "Microevolutionary Events Involving
Narrow Host Plasmids Influences Local Fixation of Vancomycin-Resistance in Enterococcus Populations". PLoS ONE 8 3
(2013): http://www.scopus.com/inward/record.url?eid=2-s2.0-84875538138&partnerID=MN8TOARS.
10.1371/journal.pone.0060589
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baumanniiclones using infrared spectroscopy". Journal of Biophotonics 7 5 (2012): 287-294. http://dx.doi.org/10.1002/jbio.201200075.
10.1002/jbio.201200075
- Novais, Â.; Rodrigues, C.; Branquinho, R.; Antunes, P.; Grosso, F.; Boaventura, L.; Ribeiro, G.; Peixe, L.. "Spread of an
OmpK36-modified ST15 Klebsiella pneumoniae variant during an outbreak involving multiple carbapenem-resistant Enterobacteriaceae
species and clones". European Journal of Clinical Microbiology and Infectious Diseases 31 11 (2012): 3057-3063. http://www.scopus.com/inward/record.url?eid=2-s2.0-84867994178&partnerID=MN8TOARS.
10.1007/s10096-012-1665-z
- Novais, C.; Freitas, A.R.; Silveira, E.; Baquero, F.; Peixe, L.; Roberts, A.P.; Coque, T.M.. "A tet(S/M) hybrid from CTn6000
and CTn916 recombination". Microbiology (United Kingdom) 158 11 (2012): 2710-2711. http://www.scopus.com/inward/record.url?eid=2-s2.0-84868327165&partnerID=MN8TOARS.
10.1099/mic.0.062729-0
- Queiroz, M.L.P.; Antunes, P.; Mourão, J.; Merquior, V.L.C.; Machado, E.; Peixe, L.V.. "Characterization of extended-spectrum
beta-lactamases, antimicrobial resistance genes, and plasmid content in Escherichia coli isolates from different sources in
Rio de Janeiro, Brazil". Diagnostic Microbiology and Infectious Disease 74 1 (2012): 91-94. http://www.scopus.com/inward/record.url?eid=2-s2.0-84865296281&partnerID=MN8TOARS.
10.1016/j.diagmicrobio.2012.05.019
- Novais, C.; Freitas, A.R.; Silveira, E.; Baquero, F.; Peixe, L.; Roberts, A.P.; Coque, T.M.. "Different genetic supports for
the tet(S) gene in enterococci". Antimicrobial Agents and Chemotherapy 56 11 (2012): 6014-6018. http://www.scopus.com/inward/record.url?eid=2-s2.0-84868026610&partnerID=MN8TOARS.
10.1128/AAC.00758-12
- Grosso, F.; Quinteira, S.; Poirel, L.; Novais, Â.; Peixe, L.. "Role of common bla OXA-24/OXA-40-carrying platforms and plasmids
in the spread of OXA-24/OXA-40 among Acinetobacter species clinical isolates". Antimicrobial Agents and Chemotherapy
56 7 (2012): 3969-3972. http://www.scopus.com/inward/record.url?eid=2-s2.0-84862529498&partnerID=MN8TOARS.
10.1128/AAC.06255-11
- Novais, Â.; Pires, J.; Ferreira, H.; Costa, L.; Montenegro, C.; Vuotto, C.; Donelli, G.; Coque, T.M.; Peixe, L.. "Characterization
of globally spread Escherichia coli ST131 isolates (1991 to 2010)". Antimicrobial Agents and Chemotherapy 56 7 (2012):
3973-3976. http://www.scopus.com/inward/record.url?eid=2-s2.0-84862526675&partnerID=MN8TOARS.
10.1128/AAC.00475-12
- Gomes-Neves, E.; Antunes, P.; Tavares, A.; Themudo, P.; Cardoso, M.F.; Gärtner, F.; Costa, J.M.; Peixe, L.. "Salmonella cross-contamination
in swine abattoirs in Portugal: Carcasses, meat and meat handlers". International Journal of Food Microbiology 157
1 (2012): 82-87. http://www.scopus.com/inward/record.url?eid=2-s2.0-84861726787&partnerID=MN8TOARS.
10.1016/j.ijfoodmicro.2012.04.015
- Grosso, F.; Carvalho, K.R.; Quinteira, S.; Ramos, A.; Carvalho-Assef, A.P.D.; Asensi, M.D.; Peixe, L.. "OXA-23-producing Acinetobacter
baumannii: A new hotspot of diversity in Rio de Janeiro?". Journal of Antimicrobial Chemotherapy 66 1 (2011): 62-65.
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10.1093/jac/dkq406
- Macedo, A.S.; Freitas, A.R.; Abreu, C.; Machado, E.; Peixe, L.; Sousa, J.C.; Novais, C.. "Characterization of antibiotic resistant
enterococci isolated from untreated waters for human consumption in Portugal". International Journal of Food Microbiology
145 1 (2011): 315-319. http://www.scopus.com/inward/record.url?eid=2-s2.0-79951549354&partnerID=MN8TOARS.
10.1016/j.ijfoodmicro.2010.11.024
- Martins, J.; Peixe, L.; Vasconcelos, V.M.. "Unraveling Cyanobacteria Ecology in Wastewater Treatment Plants (WWTP)". Microbial
Ecology 62 2 (2011): 241-256. http://www.scopus.com/inward/record.url?eid=2-s2.0-80051670803&partnerID=MN8TOARS.
10.1007/s00248-011-9806-y
- Antunes, P.; Mourão, J.; Pestana, N.; Peixe, L.. "Leakage of emerging clinically relevant multidrug-resistant Salmonella clones
from pig farms". Journal of Antimicrobial Chemotherapy 66 9 (2011): 2028-2032. http://www.scopus.com/inward/record.url?eid=2-s2.0-80051703059&partnerID=MN8TOARS.
10.1093/jac/dkr228
- Grosso, F.; Quinteira, S.; Peixe, L.. "Understanding the dynamics of imipenem-resistant Acinetobacter baumannii lineages within
Portugal". Clinical Microbiology and Infection 17 8 (2011): 1275-1279. http://www.scopus.com/inward/record.url?eid=2-s2.0-79960669969&partnerID=MN8TOARS.
10.1111/j.1469-0691.2011.03469.x
- Freitas, A.R.; Novais, C.; Correia, R.; Monteiro, M.; Coque, T.M.; Peixe, L.. "Non-susceptibility to tigecycline in enterococci
from hospitalised patients, food products and community sources". International Journal of Antimicrobial Agents 38
2 (2011): 174-176. http://www.scopus.com/inward/record.url?eid=2-s2.0-79959766865&partnerID=MN8TOARS.
10.1016/j.ijantimicag.2011.04.014
- Freitas, A.R.; Coque, T.M.; Novais, C.; Hammerum, A.M.; Lester, C.H.; Zervos, M.J.; Donabedian, S.; et al. "Human and swine
hosts share vancomycin-resistant Enterococcus faecium CC17 and CC5 and Enterococcus faecalis CC2 clonal clusters harboring
Tn1546 on indistinguishable plasmids". Journal of Clinical Microbiology 49 3 (2011): 925-931. http://www.scopus.com/inward/record.url?eid=2-s2.0-79952327503&partnerID=MN8TOARS.
10.1128/JCM.01750-10
- Antunes, P.; Mourão, J.; Machado, J.; Peixe, L.. "First description of qnrS1-IncN plasmid in a ST11 Salmonella Enteritidis
clinical isolate from Portugal". Diagnostic Microbiology and Infectious Disease 69 4 (2011): 463-465. http://www.scopus.com/inward/record.url?eid=2-s2.0-79952425613&partnerID=MN8TOARS.
10.1016/j.diagmicrobio.2010.11.004
- Extremina, C.I.; Costa, L.; Aguiar, A.I.; Peixe, L.; Fonseca, A.P.. "Optimization of processing conditions for the quantification
of enterococci biofilms using microtitre-plates". Journal of Microbiological Methods 84 2 (2011): 167-173. http://www.scopus.com/inward/record.url?eid=2-s2.0-79251647502&partnerID=MN8TOARS.
10.1016/j.mimet.2010.11.007
- Robin, F.; Delmas, J.; Machado, E.; Bouchon, B.; Peixe, L.; Bonnet, R.. "Characterization of the novel CMT enzyme TEM-154".
Antimicrobial Agents and Chemotherapy 55 3 (2011): 1262-1265. http://www.scopus.com/inward/record.url?eid=2-s2.0-79952335003&partnerID=MN8TOARS.
10.1128/AAC.01359-10
- Rocha, J.; Peixe, L.; Gomes, N.C.M.; Calado, R.. "Cnidarians as a source of new marine bioactive compounds - An overview of
the last decade and future steps for bioprospecting". Marine Drugs 9 10 (2011): 1860-1886. http://www.scopus.com/inward/record.url?eid=2-s2.0-80054901242&partnerID=MN8TOARS.
10.3390/md9101860
- Freitas AR; Novais C; Ruiz-Garbajosa P; Coque TM; Peixe L; Freitas, A. R.; Novais, C.; et al. "Dispersion of Multidrug-Resistant
Enterococcus faecium Isolates Belonging to Major Clonal Complexes in Different Portuguese Settings.". Applied and Environmental
Microbiology 75 14 (2010): 4904-4908. http://europepmc.org/abstract/PMC/PMC2813016.
10.1128/aem.02945-08
- Ratkai, C.; Nagy, E.; Peixe, L.; Bertalan, V.; Hajdú, E.. "Isolation and characterization of an imported extremely-resistant
Pseudomonas aeruginosa producing three different extended-spectrum ß-lactamases and hyperproducing two multidrug-efflux pumps".
Journal of Infection 61 6 (2010): 511-512. http://www.scopus.com/inward/record.url?eid=2-s2.0-78649582363&partnerID=MN8TOARS.
10.1016/j.jinf.2010.10.006
- Martins, J.; Peixe, L.; Vasconcelos, V.. "Cyanobacteria and bacteria co-occurrence in a wastewater treatment plant: Absence
of allelopathic effects". Water Science and Technology 62 8 (2010): 1954-1962. http://www.scopus.com/inward/record.url?eid=2-s2.0-78751480693&partnerID=MN8TOARS.
10.2166/wst.2010.551
- Freitas, A.R.; Tedim, A.P.; Novais, C.; Ruiz-Garbajosa, P.; Werner, G.; Laverde-Gomez, J.A.; Cantón, R.; et al. "Global spread
of the hylEfm colonization-virulence gene in megaplasmids of the Enterococcus faecium CC17 polyclonal subcluster". Antimicrobial
Agents and Chemotherapy 54 6 (2010): 2660-2665. http://www.scopus.com/inward/record.url?eid=2-s2.0-77952594598&partnerID=MN8TOARS.
10.1128/AAC.00134-10
- Antunes, P.; Coque, T.M.; Peixe, L.. "Emergence of an IncI¿ plasmid encoding CMY-2 ß-lactamase associated with the international
ST19 OXA-30-producing ß-lactamase Salmonella Typhimurium multidrug-resistant clone". Journal of Antimicrobial Chemotherapy
65 10 (2010): 2097-2100. http://www.scopus.com/inward/record.url?eid=2-s2.0-77957231634&partnerID=MN8TOARS.
10.1093/jac/dkq293
- Grosso, F.; Quinteira, S.; Peixe, L.. "Emergence of an extreme-drug-resistant (XDR) Acinetobacter baumannii carrying blaOXA-23
in a patient with acute necrohaemorrhagic pancreatitis". Journal of Hospital Infection 75 1 (2010): 82-83. http://www.scopus.com/inward/record.url?eid=2-s2.0-77951282217&partnerID=MN8TOARS.
10.1016/j.jhin.2010.01.007
- Ratkai, C.; Peixe, L.V.; Grosso, F.; Freitas, A.R.; Antunes, P.; Fodor, E.; Hajdú, E.; Nagy, E.. "Successful application of
the DiversiLab repetitive-sequence-based PCR typing system for confirmation of the circulation of a multiresistant Pseudomonas
aeruginosa clone in different hospital wards". Diagnostic Microbiology and Infectious Disease 67 2 (2010): 202-206.
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10.1016/j.diagmicrobio.2010.01.010
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in Gram-negative bacterial pathogens: Detection and surveillance issues". Clinical Microbiology and Infection 16 2
(2010): 112-122. http://www.scopus.com/inward/record.url?eid=2-s2.0-74549182171&partnerID=MN8TOARS.
10.1111/j.1469-0691.2009.03116.x
- Novais, Â.; Baquero, F.; Machado, E.; Cantón, R.; Peixe, L.; Coque, T.M.. "International spread and persistence of TEM-24
is caused by the confluence of highly penetrating Enterobacteriaceae clones and an IncA/C2 plasmid containing Tn1696::Tn1
and IS5075-Tn21". Antimicrobial Agents and Chemotherapy 54 2 (2010): 825-834. http://www.scopus.com/inward/record.url?eid=2-s2.0-75749094339&partnerID=MN8TOARS.
10.1128/AAC.00959-09
- Freitas, A.R.; Novais, C.; Ruiz-Garbajosa, P.; Coque, T.M.; Peixe, L.. "Erratum: Dispersion of multidrug-resistant Enterococcus
faecium isolates belonging to major clonal complexes in different portuguese settings (Applied and Environment Microbiology
75:14 (4904-4908))". Applied and Environmental Microbiology 76 3 (2010): http://www.scopus.com/inward/record.url?eid=2-s2.0-75749140125&partnerID=MN8TOARS.
10.1128/AEM.02712-09
- Ratkai, C.; Quinteira, S.; Grosso, F.; Monteiro, N.; Nagy, E.; Peixe, L.. "Controlling for false positives: Interpreting MBL
Etest and MBL combined disc test for the detection of metallo-ß-lactamases". Journal of Antimicrobial Chemotherapy
64 3 (2009): 657-658. http://www.scopus.com/inward/record.url?eid=2-s2.0-69049115223&partnerID=MN8TOARS.
10.1093/jac/dkp229
- Freitas, A.R.; Novais, C.; Ruiz-Garbajosa, P.; Coque, T.M.; Peixe, L.. "Clonal expansion within clonal complex 2 and spread
of vancomycin-resistant plasmids among different genetic lineages of Enterococcus faecalis from Portugal". Journal of Antimicrobial
Chemotherapy 63 6 (2009): 1104-1111. http://www.scopus.com/inward/record.url?eid=2-s2.0-65749093461&partnerID=MN8TOARS.
10.1093/jac/dkp103
- Freitas, A.R.; Novais, C.; Ruiz-Garbajosa, P.; Coque, T.M.; Peixe, L.. "Dispersion of multidrug-resistant Enterococcus faecium
isolates belonging to major clonal complexes in different Portuguese settings". Applied and Environmental Microbiology
75 14 (2009): 4904-4908. http://www.scopus.com/inward/record.url?eid=2-s2.0-67650500610&partnerID=MN8TOARS.
10.1128/AEM.02945-08
- Machado, E.; Coque, T.M.; Cantón, R.; Sousa, J.C.; Silva, D.; Ramos, M.; Rocha, J.; Ferreira, H.; Peixe, L.. "Leakage into
Portuguese aquatic environments of extended-spectrum-ß-lactamase-producing Enterobacteriaceae". Journal of Antimicrobial
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10.1093/jac/dkn510
- Novais, C.; Freitas, A.R.; Sousa, J.C.; Baquero, F.; Coque, T.M.; Peixe, L.V.. "Diversity of Tn1546 and its role in the dissemination
of vancomycin-resistant enterococci in Portugal". Antimicrobial Agents and Chemotherapy 52 3 (2008): 1001-1008. http://www.scopus.com/inward/record.url?eid=2-s2.0-40549086574&partnerID=MN8TOARS.
10.1128/AAC.00999-07
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among Enterobacteriaceae isolates recovered from chickens and swine in Portugal". Journal of Antimicrobial Chemotherapy
62 2 (2008): 296-302. http://www.scopus.com/inward/record.url?eid=2-s2.0-47249166164&partnerID=MN8TOARS.
10.1093/jac/dkn179
- Cantón, R.; Novais, A.; Valverde, A.; Machado, E.; Peixe, L.; Baquero, F.; Coque, T.M.. "Prevalence and spread of extended-spectrum
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10.1111/j.1469-0691.2007.01850.x
- Coque, T.M.; Novais, Â.; Carattoli, A.; Poirel, L.; Pitout, J.; Peixe, L.; Baquero, F.; et al. "Dissemination of clonally
related Escherichia coli strains expressing extended-spectrum ß-lactamase CTX-M-15". Emerging Infectious Diseases 14
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10.3201/eid1402.070350
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and Acinetobacter baumannii isolates carrying plasmid-mediated OXA-40 from a Portuguese hospital [6]". Antimicrobial Agents
and Chemotherapy 51 9 (2007): 3465-3466. http://www.scopus.com/inward/record.url?eid=2-s2.0-35948959329&partnerID=MN8TOARS.
10.1128/AAC.00267-07
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10.1093/jac/dkm381
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3' conserved sequence region among Salmonella isolates". Antimicrobial Agents and Chemotherapy 51 4 (2007): 1545-1548.
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Enterobacteriaceae producing extended-spectrum ß-lactamases in a spanish hospital over a 15-year period (1988 to 2003)". Antimicrobial
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10.1128/AAC.01389-06
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isolates producing CTX-M-1-like enzymes in spain are associated with IncFII (CTX-M-15) and broad-host-range (CTX-M-1, -3,
and -32) plasmids". Antimicrobial Agents and Chemotherapy 51 2 (2007): 796-799. http://www.scopus.com/inward/record.url?eid=2-s2.0-33846662974&partnerID=MN8TOARS.
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as emerging resistance determinants in Gram-negative pathogens: open issues". International Journal of Antimicrobial Agents
29 4 (2007): 380-388. http://www.scopus.com/inward/record.url?eid=2-s2.0-33847377956&partnerID=MN8TOARS.
10.1016/j.ijantimicag.2006.10.008
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International Journal of Antimicrobial Agents (2007): S268-S269.
Published
- Quinteira, S.; Peixe, L.. "Multiniche screening reveals the clinically relevant metallo-ß- lactamase VIM-2 in Pseudomonas
aeruginosa far from the hospital setting: An ongoing dispersion process?". Applied and Environmental Microbiology 72
5 (2006): 3743-3745. http://www.scopus.com/inward/record.url?eid=2-s2.0-33646566289&partnerID=MN8TOARS.
10.1128/AEM.72.5.3743-3745.2006
- Novais, C.; Coque, T.M.; Sousa, J.C.; Peixe, L.V.. "Antimicrobial resistance among faecal enterococci from healthy individuals
in Portugal". Clinical Microbiology and Infection 12 11 (2006): 1131-1134. http://www.scopus.com/inward/record.url?eid=2-s2.0-33749078916&partnerID=MN8TOARS.
10.1111/j.1469-0691.2006.01542.x
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Escherichia coli strains over 12 years in a single hospital in Madrid, Spain". Antimicrobial Agents and Chemotherapy
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enterococci from hospital sewage in Portugal (Applied and Environmental Microbiology (2005) 71, 6 (3364-3368))". Applied
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10.1093/jac/dkh333
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in Portugal: Report of an Escherichia coli isolate harbouring blaCTX-M-14". Clinical Microbiology and Infection 10
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OXA-40 carbapenemase-producing Acinetobacter baumannii clone in the Iberian Peninsula". Journal of Antimicrobial Chemotherapy
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Susceptibility to Antimicrobial Agents of Listeria spp. and Listeria monocytogenes Isolated from Poultry Carcasses in Porto,
Portugal". Journal of Food Protection 65 12 (2002): 1888-1893. http://dx.doi.org/10.4315/0362-028x-65.12.1888.
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| CARACTERIZACAO MOLECULAR DA RESISTENCIA BACTERIANA AOS ANTIBIOTICOS AMINOGLICOSIDEOS-AMINOCICLITOIS EM ISOLADOS CLINICOS
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10.1093/jac/27.4.437
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Magazine article |
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|
Manual |
- Peixe, L. Guia básico de MicroMundo@UPorto: EM BUSCA DE MICRORGANISMOS PRODUTORES DE NOVOS ANTIBIÓTICOS EM HABITATS NATURAIS.
Portugal. 2018.
Published
|
Newsletter article |
- Ribeiro-Almeida, M; Mourão, Joana; Novais, Ângela; Pereira, Sofia; Freitas-Silva, Joana; Ribeiro, Sofia; Martins da Costa,
Paulo; Peixe, L; Antunes, Patrícia. "Gull droppings undermine efforts to control spread of colistin-resistance genes", The
Microbiologist, 2022, https://www.the-microbiologist.com/news/gull-droppings-undermine-efforts-to-control-spread-of-colistin-resistance-genes/339.article.
|
Newspaper article |
- Rebelo, Andreia; Duarte, Bárbara; Carolina Ferreira; Mourão, Joana; Sofia Ribeiro; Freitas, Ana R; Coque, Teresa M; et al.
"Enterococcus spp. from chicken meat collected 20 years apart overcome multiple stresses occurring in the poultry production
chain: Antibiotics, copper and acids", Int J Food Microbiol ., 2023, https://www.sciencedirect.com/science/article/pii/S0168160522004536?via%3Dihub.
- EFSA Panel on Biological Hazards (BIOHAZ); Koutsoumanis, Kostas; Peixe LV. "Evaluation of a multi-step catalytic co-processing
hydrotreatment for the production of renewable fuels using Category 3 animal fat and used cooking oils.", EFSA J., 2022, doi: 10.2903/j.efsa.2022.7591.
- EFSA Panel on Biological Hazards (BIOHAZ); Koutsoumanis, Konstantinos; Peixe, Luísa; et al. "Transmission of antimicrobial
resistance (AMR) during animal transport", EFSA Journal, 2022, https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9593722/.
|
Online resource |
- Ana Almeida-Santos; Ana P. Tedim; Novais, Carla; Luísa Maria Vieira Peixe; Freitas, Ana R. BioProject ID PRJNA1055432 of
NCBI whole genome sequences (21 Enterococcus faecium, 13 E. lactis, 10 E. faecalis, one E. thailandicus). 2023. https://www.ncbi.nlm.nih.gov/bioproject/?term=PRJNA1055432.
- Andreia Rebelo; Novais, Carla; Antunes, Patrícia; Freitas, Ana R; Luísa Maria Vieira Peixe. BioProject PRJNA948394 of NCBI
whole genome sequences - Role of copper feed to the selection of multidrug-resistant Enterococcus from poultry production.
2023. https://www.ncbi.nlm.nih.gov/bioproject/?term=PRJNA948394.
- Louise Roer; Novais, Carla; Luísa Maria Vieira Peixe; Freitas, Ana R. Enterococcus faecium VirulenceFinder (46 Enterococcus
faecium genomes). 2023. https://www.ncbi.nlm.nih.gov/bioproject/?term=PRJNA796949.
- Ana Almeida-Santos; Belloso Daza, Mireya Viviana; Novais, Carla; Antonia Read; Alves, Valquíria; Luísa Maria Vieira Peixe;
Cocconcelli, Pier Sandro; Ana Raquel Freitas. BioProject PRJNA851953 (whole genome sequences of Enterococcus lactis).
2023. https://www.ncbi.nlm.nih.gov/bioproject/PRJNA851953.
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Antunes, Patrícia. Occurrence of Klebsiella pneumoniae from poultry-associated environment. Whole genome shotgun sequencing
project of 20 Klebsiella pneumoniae genomes deposited at DDBJ/ENA/GenBank. BioProject PRJEB60418. 2023. https://www.ebi.ac.uk/ena/browser/view/PRJEB60418.
- Mourão, Joana; Magalhães, Mafalda; Ribeiro-Almeida, M; Andreia Rebelo; Novais, Carla; Peixe, L; Novais, Ângela; Antunes, Patrícia.
WGS analysis of Klebsiella pneumoniae from intensive poultry production chain. Whole genome shotgun sequencing project
of 48 Klebsiella pneumoniae genomes deposited at DDBJ/ENA/GenBank. BioProject PRJEB62836. 2023. https://www.ebi.ac.uk/ena/browser/view/PRJEB62836.
- Gomes, Anicia; Mourão, Joana; Santos, Conceição; Peixe, L; Antunes, Patrícia. Escherichia coli isolate L9.4, whole genome
shotgun sequencing project deposited at Enterobase. Uberstrain number: ESC_AB5245AA. 2022. https://enterobase.warwick.ac.uk/.
- Gomes, Anicia; Mourão, Joana; Santos, Conceição; Peixe, L; Antunes, Patrícia. Escherichia coli isolate SL6.1, whole genome
shotgun sequencing project deposited at Enterobase. Uberstrain number: ESC_AB5246AA. 2022. https://enterobase.warwick.ac.uk/.
- Gomes, Anicia; Mourão, Joana; Santos, Conceição; Peixe, L; Antunes, Patrícia. Escherichia coli isolate SL8.6, whole genome
shotgun sequencing project deposited at Enterobase. Uberstrain number: ESC_AB5247AA. 2022. https://enterobase.warwick.ac.uk/.
- Gomes, Anicia; Mourão, Joana; Santos, Conceição; Peixe, L; Antunes, Patrícia. Escherichia coli isolate SL13.8, whole genome
shotgun sequencing project deposited at Enterobase. Uberstrain number: ESC_AB5248AA. 2022. https://enterobase.warwick.ac.uk/.
- Gomes, Anicia; Mourão, Joana; Santos, Conceição; Peixe, L; Antunes, Patrícia. Escherichia coli isolate SL13.9, whole genome
shotgun sequencing project deposited at Enterobase. Uberstrain number: ESC_AB5249AA. 2022. https://enterobase.warwick.ac.uk/.
- Gomes, Anicia; Mourão, Joana; Santos, Conceição; Peixe, L; Antunes, Patrícia. Escherichia coli isolate SL16.6, whole genome
shotgun sequencing project deposited at Enterobase. Uberstrain number: ESC_AB5250AA. 2022. https://enterobase.warwick.ac.uk/.
- Ribeiro, Sofia; Mourão, Joana; Novais, Ângela; Campos, Joana; Peixe, L; Antunes, Patrícia. Escherichia coli isolate P26_C8,
whole genome shotgun sequencing project deposited at DDBJ/ENA/GenBank. GenBank accession number: NZ_CAJSMM000000000.1.
2022. https://www.ncbi.nlm.nih.gov/nuccore/NZ_CAJSMM000000000.1.
- Ribeiro, Sofia; Mourão, Joana; Novais, Ângela; Campos, Joana; Peixe, L; Antunes, Patrícia. Escherichia coli isolate P22_C1,
whole genome shotgun sequencing project deposited at DDBJ/ENA/GenBank. GenBank accession number: NZ_CAJSMJ000000000.1.
2022. https://www.ncbi.nlm.nih.gov/nuccore/NZ_CAJSMJ000000000.1.
- Ribeiro, Sofia; Mourão, Joana; Novais, Ângela; Campos, Joana; Peixe, L; Antunes, Patrícia. Escherichia coli isolate P15_C34,
whole genome shotgun sequencing project deposited at DDBJ/ENA/GenBank. GenBank accession number: NZ_CAJSMI000000000.1.
2022. https://www.ncbi.nlm.nih.gov/nuccore/NZ_CAJSMI000000000.1.
- Ribeiro, Sofia; Mourão, Joana; Novais, Ângela; Campos, Joana; Peixe, L; Antunes, Patrícia. Escherichia coli isolate P37_C3,
whole genome shotgun sequencing project deposited at DDBJ/ENA/GenBank. GenBank accession number: NZ_CAJSML000000000.1.
2022. https://www.ncbi.nlm.nih.gov/nuccore/NZ_CAJSML000000000.1.
- Ribeiro, Sofia; Mourão, Joana; Novais, Ângela; Campos, Joana; Peixe, L; Antunes, Patrícia. Escherichia coli isolate P2_C27,
whole genome shotgun sequencing project deposited at DDBJ/ENA/GenBank. GenBank accession number: NZ_CAJSMP000000000.1.
2022. https://www.ncbi.nlm.nih.gov/nuccore/NZ_CAJSMP000000000.1.
- Ribeiro-Almeida, M; Magalhães, Tatiana Mafalda; Mourão, Joana; Paiva, Sofia; Freitas, Ana R; Novais, Carla; Peixe, L; Antunes,
Patrícia. Salmonella enterica 1,4,[5],12:i:- isolate R54_S100, whole genome shotgun sequencing project deposited at Enterobase.
Uberstrain number: SAL_LB4229AA. 2022. https://enterobase.warwick.ac.uk/.
- Ribeiro-Almeida, M; Magalhães, Tatiana Mafalda; Mourão, Joana; Paiva, Sofia; Freitas, Ana R; Novais, Carla; Peixe, L; Antunes,
Patrícia. Escherichia coli isolate R26_1_100, whole genome shotgun sequencing project deposited at Enterobase. Uberstrain
number: ESC_YA9777AA. 2022. https://enterobase.warwick.ac.uk/.
- Ribeiro-Almeida, M; Magalhães, Tatiana Mafalda; Mourão, Joana; Paiva, Sofia; Freitas, Ana R; Novais, Carla; Peixe, L; Antunes,
Patrícia. Escherichia coli isolate R52_8, whole genome shotgun sequencing project deposited at Enterobase. Uberstrain number:
ESC_YA9779AA. 2022. https://enterobase.warwick.ac.uk/.
- Ribeiro-Almeida, M; Mourão, Joana; Novais, Ângela; Pereira, Sofia; Freitas-Silva, Joana; Ribeiro, Sofia; Martins da Costa,
Paulo; Peixe, L; Antunes, Patrícia. Escherichia coli isolate FG6_310, whole genome shotgun sequencing project deposited
at Enterobase. Uberstrain number: ESC_YA6250AA. 2022. https://enterobase.warwick.ac.uk/.
- Ribeiro-Almeida, M; Mourão, Joana; Novais, Ângela; Pereira, Sofia; Freitas-Silva, Joana; Ribeiro, Sofia; Martins da Costa,
Paulo; Peixe, L; Antunes, Patrícia. Escherichia coli isolate FG6_311_1, whole genome shotgun sequencing project deposited
at Enterobase. Uberstrain number: ESC_YA6252AA. 2022. https://enterobase.warwick.ac.uk/.
- Ribeiro-Almeida, M; Mourão, Joana; Novais, Ângela; Pereira, Sofia; Freitas-Silva, Joana; Ribeiro, Sofia; Martins da Costa,
Paulo; Peixe, L; Antunes, Patrícia. Escherichia coli isolate FG6_312, whole genome shotgun sequencing project deposited
at Enterobase. Uberstrain number: ESC_YA6253AA. 2022. https://enterobase.warwick.ac.uk/.
- Ribeiro-Almeida, M; Mourão, Joana; Novais, Ângela; Pereira, Sofia; Freitas-Silva, Joana; Ribeiro, Sofia; Martins da Costa,
Paulo; Peixe, L; Antunes, Patrícia. Escherichia coli isolate FG7_300, whole genome shotgun sequencing project deposited
at Enterobase. Uberstrain number: ESC_YA6254AA. 2022. https://enterobase.warwick.ac.uk/.
- Ribeiro-Almeida, M; Mourão, Joana; Novais, Ângela; Pereira, Sofia; Freitas-Silva, Joana; Ribeiro, Sofia; Martins da Costa,
Paulo; Peixe, L; Antunes, Patrícia. Escherichia coli isolate FG7_302, whole genome shotgun sequencing project deposited
at Enterobase. Uberstrain number: ESC_YA6255AA. 2022. https://enterobase.warwick.ac.uk/.
- Ribeiro-Almeida, M; Mourão, Joana; Novais, Ângela; Pereira, Sofia; Freitas-Silva, Joana; Ribeiro, Sofia; Martins da Costa,
Paulo; Peixe, L; Antunes, Patrícia. Escherichia coli isolate FG8_300, whole genome shotgun sequencing project deposited
at Enterobase. Uberstrain number: ESC_YA6256AA. 2022. https://enterobase.warwick.ac.uk/.
- Ribeiro-Almeida, M; Mourão, Joana; Novais, Ângela; Pereira, Sofia; Freitas-Silva, Joana; Ribeiro, Sofia; Martins da Costa,
Paulo; Peixe, L; Antunes, Patrícia. Escherichia coli isolate FG9_301, whole genome shotgun sequencing project deposited
at Enterobase. Uberstrain number: ESC_YA6261AA. 2022. https://enterobase.warwick.ac.uk/.
- Ribeiro-Almeida, M; Mourão, Joana; Novais, Ângela; Pereira, Sofia; Freitas-Silva, Joana; Ribeiro, Sofia; Martins da Costa,
Paulo; Peixe, L; Antunes, Patrícia. Escherichia coli isolate FG10_301_1, whole genome shotgun sequencing project deposited
at Enterobase. Uberstrain number: ESC_YA6262AA. 2022. https://enterobase.warwick.ac.uk/.
- Ribeiro, Sofia; Mourão, Joana; Novais, Ângela; Campos, Joana; Peixe, L; Antunes, Patrícia. Occurrence of mcr-1-carrying
Enterobacteriaceae from chicken meat supplied from Portuguese farms. Whole genome shotgun sequencing project of 2 Klebsiella
pneumoniae genomes deposited at DDBJ/ENA/GenBank. BioProject PRJEB44904. 2021. https://www.ebi.ac.uk/ena/browser/view/PRJEB44904.
- Ribeiro, Sofia; Mourão, Joana; Novais, Ângela; Campos, Joana; Peixe, L; Antunes, Patrícia. Occurrence of mcr-1-carrying
Enterobacteriaceae from chicken meat supplied from Portuguese farms. Whole genome shotgun sequencing project of 6 Escherichia
coli genomes deposited at DDBJ/ENA/GenBank. BioProject PRJEB44904. 2021. https://www.ebi.ac.uk/ena/browser/view/PRJEB44904.
- Ribeiro, Sofia; Mourão, Joana; Novais, Ângela; Campos, Joana; Peixe, L; Antunes, Patrícia. Salmonella enterica 1,4,[5],12:i:-
isolate P1-C10, whole genome shotgun sequencing project deposited at Enterobase. Uberstrain number: SAL_DB7941AA. 2020.
https://enterobase.warwick.ac.uk/.
- Ribeiro, Sofia; Mourão, Joana; Novais, Ângela; Campos, Joana; Peixe, L; Antunes, Patrícia. Salmonella enterica Enteritidis
isolate P54-C4, whole genome shotgun sequencing project deposited at Enterobase. Uberstrain number: SAL_DB7942AA. 2020.
https://enterobase.warwick.ac.uk/species/index/senterica.
- Mourão, Joana; Rebelo, Andreia; Ribeiro, Sofia; Peixe, L; Novais, Carla; Antunes, Patrícia. Salmonella enterica subsp.
enterica serovar 4,5,12:i:- str. 961/07, complete integrative and conjugative element encoding for metal tolerance deposited
at DDBJ/ENA/GenBank. GenBank accession number: MN730125. 2020. https://www.ncbi.nlm.nih.gov/nuccore/MN730125.
- Mourão, Joana; Rebelo, Andreia; Ribeiro, Sofia; Peixe, L; Novais, Carla; Antunes, Patrícia. Salmonella enterica subsp.
enterica serovar Rissen str. S-2, genetic environment associated with the ars (arsenic) operon deposited at DDBJ/ENA/GenBank.
GenBank accession number: MN730126. 2020. https://www.ncbi.nlm.nih.gov/nuccore/MN730126.1/.
- Mourão, Joana; Rebelo, Andreia; Ribeiro, Sofia; Peixe, L; Novais, Carla; Antunes, Patrícia. Salmonella enterica subsp.
enterica serovar 4,5,12:i:- str. SLK-340, complete integrative and conjugative element encoding for metal tolerance deposited
at DDBJ/ENA/GenBank. GenBank accession number: MN730127. 2020. https://www.ncbi.nlm.nih.gov/nuccore/MN730127.
- Mourão, Joana; Rebelo, Andreia; Ribeiro, Sofia; Peixe, L; Novais, Carla; Antunes, Patrícia. Salmonella enterica subsp.
enterica serovar 4,5,12:i:- str. SLK-521, complete integrative and conjugative element encoding for metal tolerance deposited
at DDBJ/ENA/GenBank. GenBank accession number: MN730128. 2020. https://www.ncbi.nlm.nih.gov/nuccore/MN730128.
- Mourão, Joana; Rebelo, Andreia; Ribeiro, Sofia; Peixe, L; Novais, Carla; Antunes, Patrícia. Salmonella enterica subsp.
enterica serovar Typhimurium str. SLK-532, complete integrative and conjugative element encoding for metal tolerance deposited
at DDBJ/ENA/GenBank. GenBank accession number: MN730129. 2020. https://www.ncbi.nlm.nih.gov/nuccore/MN730129.
- Silva, Liliana; Grosso, Filipa; Peixe, L; Mourão, Joana. Acinetobacter pittii strain HGSA488 plasmid pLS488, complete sequence
deposited at DDBJ/ENA/GenBank. GenBank accession number: MF078634. 2020. https://www.ncbi.nlm.nih.gov/nuccore/MF078634.
- Silva, Liliana; Grosso, Filipa; Peixe, L; Mourão, Joana. Acinetobacter pittii strain HGSA535 plasmid pLS535, complete sequence
deposited at DDBJ/ENA/GenBank. GenBank accession number: MF078635. 2020. https://www.ncbi.nlm.nih.gov/nuccore/MF078635.
- Antunes, Patrícia; Campos, Joana; Pereira, Joana; Novais, Carla; Peixe, L; Mourão, Joana. Citrobacter braakii strain TrS59-15
plasmid quinolone resistance protein QnrB90 (qnrB) gene, qnrB90 allele, complete cds deposited at DDBJ/ENA/GenBank. GenBank
accession number: MG182074. 2018. https://www.ncbi.nlm.nih.gov/nuccore/MG182074.
- Antunes, Patrícia; Alves, Tatiana; Campos, Joana; Novais, Carla; Novais, Ângela; Peixe, L; Mourão, Joana. Salmonella enterica
subsp. enterica serovar Bovismorbificans strain HP507391 plasmid IncHI2 In60-like integron, complete sequence deposited at
DDBJ/ENA/GenBank. GenBank accession number: JX026665. 2016. https://www.ncbi.nlm.nih.gov/nuccore/JX026665.
- Antunes, Patrícia; Machado, Jorge; Peixe, L; Mourão, Joana. Salmonella enterica subsp. enterica strain 382/03 plasmid IncN
QNRS1 (qnrS1) gene, partial cds deposited at DDBJ/ENA/GenBank. GenBank accession number: HQ214119. 2016. https://www.ncbi.nlm.nih.gov/nuccore/HQ214119.
- Campos, Joana; Pestana, Nazaré; Peixe, L; Novais, Carla; Antunes, Patrícia; Mourão, Joana. Citrobacter freundii strain
S30_28 QnrB9 (qnrB9) gene, complete cds deposited at DDBJ/ENA/GenBank. GenBank accession number: KC688257. 2013. https://www.ncbi.nlm.nih.gov/nuccore/KC688257.
- Campos, Joana; Pestana, Nazaré; Peixe, L; Antunes, Patrícia; Mourão, Joana. Raoultella terrigena strain S52_90 extended-spectrum
beta-lactamase SHV-2 (blaSHV-2) gene, complete cds deposited at DDBJ/ENA/GenBank. GenBank accession number: KC879153.
2013. https://www.ncbi.nlm.nih.gov/nuccore/KC879153.
- Antunes, Patrícia; Campos, Joana; Pereira, Joana; Novais, Carla; Peixe, L; Mourão, Joana. Citrobacter sp. TR10_13 quinolone
resistance protein QnrB17 (qnrB17) gene, complete cds deposited at DDBJ/ENA/GenBank. GenBank accession number: KC801335.
2013. https://www.ncbi.nlm.nih.gov/nuccore/KC801335.
- Antunes, Patrícia; Campos, Joana; Mourão, Joana; Pereira, Joana; Novais, Carla; Peixe, L. Citrobacter sp. TR52_19 quinolone
resistance protein QnrB10 (qnrB10) gene, complete cds deposited at DDBJ/ENA/GenBank. GenBank accession number: KC801336.
2013. https://www.ncbi.nlm.nih.gov/nuccore/KC801336.
- Antunes, Patrícia; Campos, Joana; Pereira, Joana; Novais, Carla; Peixe, L; Mourão, Joana. Citrobacter sp. TR52_21 quinolone
resistance protein QnrB10 (qnrB10) gene, complete cds deposited at DDBJ/ENA/GenBank. GenBank accession number: KC801337.
2013. https://www.ncbi.nlm.nih.gov/nuccore/KC801337.
- Antunes, Patrícia; Campos, Joana; Mourão, Joana; Pereira, Joana; Novais, Carla; Peixe, L. Citrobacter spp. TR21_24 plasmid-mediated
quinolone resistance protein (qnrB72) gene, complete cds deposited at DDBJ/ENA/GenBank. GenBank accession number: KC741443.
2013. https://www.ncbi.nlm.nih.gov/nuccore/KC741443.
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Preprint |
- Andreia Rebelo; Agostinho Almeida; Luísa Peixe; Patrícia Antunes; Carla Novais. "Unraveling the Role of Metals and Organic
Acids towards Bacterial Antimicrobial Resistance in the Food Chain". 2023. https://doi.org/10.20944/preprints202307.1236.v1.
10.20944/preprints202307.1236.v1
- Ana P. Tedim; Ana C. Almeida-Santos; Val F. Lanza; Carla Novais; Teresa M. Coque; Ana R. Freitas; Luísa Peixe. "Bacteriocin
Distribution Patterns inEnterococcus faeciumandEnterococcus lactis:Bioinformatic Analysis Using a Tailored Genomics Framework".
2023. https://doi.org/10.1101/2023.11.13.566347.
10.1101/2023.11.13.566347
- Andreia Rebelo; Bárbara Duarte; Ana R. Freitas; Luísa Peixe; Patrícia Antunes; Carla Novais. "Exploring Peracetic Acid and
Acidic pH Tolerance of Antibiotic Resistant Non-typhoidal Salmonella and Enterococcus faecium from Diverse Epidemiological
and Genetic Backgrounds". 2023. https://doi.org/10.20944/preprints202307.1793.v1.
10.20944/preprints202307.1793.v1
- Svetlana Ugarcina Perovic; Magdalena Ksiezarek; Joana Rocha; Elisabete Alves Cappelli; Márcia Sousa; Teresa Gonçalves Ribeiro;
Filipa Grosso; Luísa Peixe. "Extended bacterial diversity of the urinary microbiome of reproductive-age healthy European women
captured by culturomics and long-read amplicon sequencing". 2022. https://doi.org/10.1101/2022.01.19.476882.
10.1101/2022.01.19.476882
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Thesis / Dissertation |
- Peixe, L. "Characterization of plasmidic extended spectrum b-lactamases in E. coli". PhD, 1996.
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Website |
- Ribeiro TG; Duarte, Bárbara; Peixe, L. Culture Collection of Porto (CCP). 2022. https://ccp.ff.up.pt/.
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