Identification
Personal identification
- Full name
- Rui Travasso
Citation names
- Travasso, Rui
- Rui D.M. Travasso
- Rui Travasso
- Rui DM Travasso
Author identifiers
- Ciência ID
- 7618-0D43-230B
- ORCID iD
- 0000-0001-6078-0721
Email addresses
- rui.travasso@gmail.com (Professional)
- ruit@uc.pt (Professional)
Addresses
- Centro de Física da Univerisdade de Coimbra, Departamento de Física, Universidade de Coimbra. Rua Larga, 3004-516, Coimbra, Coimbra, Portugal (Professional)
Websites
- https://biologicalmodelling.com/ (Professional)
Knowledge fields
- Exact Sciences - Physical Sciences
Languages
Language | Speaking | Reading | Writing | Listening | Peer-review |
---|---|---|---|---|---|
Portuguese (Mother tongue) | |||||
English | Proficiency (C2) | Proficiency (C2) | Proficiency (C2) | Proficiency (C2) | Proficiency (C2) |
Spanish; Castilian | Proficiency (C2) | Proficiency (C2) | Advanced (C1) | Proficiency (C2) | Upper intermediate (B2) |
Education
Degree | Classification | |
---|---|---|
2003
Concluded
|
Ph.D. (Doutoramento)
University of Manchester, United Kingdom
"Coarsening in sheared systems and metastability in Ising-like systems with four-spin interaction" (THESIS/DISSERTATION)
|
N/A |
1999
Concluded
|
Licenciatura (Licenciatura)
Universidade do Porto Faculdade de Ciencias, Portugal
"Study of a system with four-spin interaction through real-space renormalization (4th year project)" (THESIS/DISSERTATION)
|
18 valores |
Affiliation
Science
Category Host institution |
Employer | |
---|---|---|
2013/09/01 - 2018/08/31 | Principal Investigator (Research) | Universidade de Coimbra, Portugal |
2008/02/01 - 2013/01/31 | Auxiliary Researcher (Research) | Universidade de Coimbra, Portugal |
Teaching in Higher Education
Category Host institution |
Employer | |
---|---|---|
2023/01/31 - Current | Associate Professor (University Teacher) | Universidade de Coimbra, Portugal |
2018/11/26 - 2023/01/31 | Assistant Professor (University Teacher) | Universidade de Coimbra, Portugal |
2018/09/01 - 2018/11/26 | Invited Assistant Professor (University Teacher) | Universidade de Coimbra Departamento de Fisica, Portugal |
2013/02/01 - 2013/08/31 | Invited Assistant Professor (University Teacher) | Universidade de Coimbra, Portugal |
Positions / Appointments
Category Host institution |
Employer | |
---|---|---|
2022 - Current | Organic Unit Sub-director | Universidade de Coimbra Departamento de Fisica, Portugal |
2022 - Current | International Mobility Coordinator | Universidade de Coimbra Departamento de Fisica, Portugal |
2022 - Current | Member of the Direction | Sociedade Portuguesa de Biofísica, Portugal |
2019 - Current | Director of the National Commission for the Physics Olympiads | Sociedade Portuguesa de Física, Portugal |
2013 - 2019 | President of SPF's Centro's Regional Delegation | Sociedade Portuguesa de Física, Portugal |
2010 - 2018 | Member of the National Commission for the Physics Olympiads | Sociedade Portuguesa de Física, Portugal |
2013 - 2014 | Member of Direction Board | Associação Nacional de Investigadores em Ciência e Tecnologia, Portugal |
Others
Category Host institution |
Employer | |
---|---|---|
2006/01/01 - 2008/01/31 | Post-doc | Universidade de Lisboa, Portugal |
2003/04/01 - 2005/12/31 | Post-Doc | University of Pittsburgh, United States |
Projects
Grant
Designation | Funders | |
---|---|---|
2023 - 2024 | Novos Talentos em Física Gulbenkian
Novos Talentos Gulbenkian
Supervisor
|
|
2021 - 2024 | Fibrinogen-erythrocyte interaction as a new approach on the early detection of thrombotic events in vascular diseases
PTDC/EMD-TLM/7289/2020
Research Fellow
|
Fundação para a Ciência e a Tecnologia |
2018/07/26 - 2022/07/25 | Modelação de Angiogénese na Diabetes Mellitus Tipo 2 - integrando abordagens experimentais e teóricas
POCI-01-0145-FEDER-031743
PTDC/BIA-CEL/31743/2017
POCI-01-0145-FEDER-031743
Principal investigator
Universidade de Coimbra Centro de Física, Portugal
|
Fundação para a Ciência e a Tecnologia
Ongoing
|
2021 - 2022 | Novos Talentos em Física Gulbenkian
Novos Talentos Gulbenkian
Supervisor
|
Fundacao Calouste Gulbenkian
Ongoing
|
2021 - 2021 | Verão com Ciência
Verão com Ciência
Supervisor
|
Fundação para a Ciência e a Tecnologia
Concluded
|
2020/07/01 - 2020/11/01 | Escola de Verão de Biologia Computacional
Verao com Ciencia
Supervisor
|
Fundação para a Ciência e a Tecnologia
Concluded
|
2011/03/01 - 2014/08/31 | Angiogénese na Retinopatia Diabética: Integrando Experiência e Modulação
PTDC/SAU-ENB/110354/2009
Principal investigator
Universidade de Coimbra Centro de Física, Portugal
|
Fundação para a Ciência e a Tecnologia
Concluded
|
2011/02/01 - 2014/07/31 | The nature of the protein folding process
PTDC/FIS/113638/2009
Researcher
|
Fundação para a Ciência e a Tecnologia
Concluded
|
2010/04 - 2013/09 | New methodological advances in Diffusion Spectrum MRI and its implications for structure-function correlations in brain imaging
Researcher
|
Fundação para a Ciência e a Tecnologia
Concluded
|
2007 - 2012 | Gulbenkian Estímulo Científico: "The role of surface morphology on tumor growth"
Estímulo Científico Gulbenkian
Principal investigator
|
|
2007/01 - 2010/04 | From protein folding to protein design: Exploring biological complexity via computer simulation of simple models | Fundação para a Ciência e a Tecnologia |
2007/01 - 2010/04 | From protein folding to protein design: Exploring biological complexity via computer simulation of simple models | Fundação para a Ciência e a Tecnologia |
2005/04 - 2007/11 | Complex Systems: from Physics to Biology and the Social Sciences | Fundação para a Ciência e a Tecnologia |
Contract
Designation | Funders | |
---|---|---|
2021 - Current | PhD Scholarship for Ana Galvão
UIDP/04564/2020
Supervisor
|
Fundação para a Ciência e a Tecnologia |
2018 - Current | PhD Scholarship for Marcos Gouveia
SFRH/BD/136046/2018
|
Fundação para a Ciência e a Tecnologia |
2017 - Current | PhD Scholarship for João Simões
SFRH/BD/122607/2016
Supervisor
|
Fundação para a Ciência e a Tecnologia
Ongoing
|
2023 - 2028 | PhD Scholarship for Matilde Palmeira
Prototera ID-13
Supervisor
|
|
2022 - 2026 | PhD Scholarship for Tiago Azevedo
ProtoTera ID-12
Supervisor
|
Fundação para a Ciência e a Tecnologia |
2019/12/01 - 2022/11/30 | Gestão Inteligente do Fogo
PCIF/SSI/0151/2018
Associação para o Desenvolvimento da Aerodinâmica Industrial, Portugal
|
Fundação para a Ciência e a Tecnologia
Ongoing
|
2015 - 2020 | PhD scholarship for Maurício Soares
235101/2014-1
Supervisor
|
Conselho Nacional de Desenvolvimento Científico e Tecnológico
Concluded
|
2013 - 2018 | FCT Principal Researcher
IF/00312/2012
Principal investigator
|
|
2011/01/01 - 2013/12/31 | Projecto Estratégico - UI 405 - 2011-2012
PEst-C/FIS/UI0405/2011
Universidade do Porto Faculdade de Ciências, Portugal
Universidade da Beira Interior, Portugal Universidade de Coimbra, Portugal |
Fundação para a Ciência e a Tecnologia
Concluded
|
2011/01/01 - 2013/12/31 | Projecto Estratégico - UI 261 - 2011-2012
PEst-OE/FIS/UI0261/2011
Universidade de Lisboa Centro de Fisíca e Engenharia de Materiais Avançados, Portugal
Fundação da Faculdade de Ciências da Universidade de Lisboa, Portugal Universidade de Lisboa Instituto Superior Técnico, Portugal Associação do Instituto Superior Técnico para a Investigação e Desenvolvimento, Portugal |
Fundação para a Ciência e a Tecnologia
Concluded
|
2007 - 2007 | FCT PostDoc scholarship
SFRH/BPD/27328/2006
Post-doc
|
|
2000 - 2003 | FCT Ph.D. scholarship
PraxisXXI/BD/21760/99
PhD Student Fellow
|
|
1999 - 1999 | Erasmus Scholarship
Erasmus
Master Student Fellow
|
Other
Designation | Funders | |
---|---|---|
2023 - 2027 | CA-22153 - "European Curvature and Biology Network (EuroCurvoBioNet)"
CA-22153
National Representative in Management Committee
|
|
2018/10/18 - 2022/10/17 | CA17139 - European Topology Interdisciplinary Action
CA17139
National Representative in Management Committee
|
European Cooperation in Science and Technology
Ongoing
|
2016/10/19 - 2020/10/18 | CA15214 - An integrative action for multidisciplinary studies on cellular structural networks
CA15214
National Representative in Management Committee
|
European Cooperation in Science and Technology
Ongoing
|
Outputs
Publications
Book |
|
Book chapter |
|
Conference paper |
|
Journal article |
|
Activities
Oral presentation
Presentation title | Event name Host (Event location) |
|
---|---|---|
2023/11/06 | Adhesion modulates cell migration and endothelial cell dynamics | International Conference on Flow Dynamics 2023
(Sendai, Japan)
|
2023/11/06 | Heart Rate in Mammals | International Conference on Flow Dynamics 2023
(2023, Japan)
|
2023/08/14 | Fibrinogen-Mediated Erythrocyte-Erythrocyte Adhesion: Clinical Relevance, Experimental Assessment and Mathematical Modeling | 11th International Conference on Biological Physics
(Seoul, South Korea)
|
2023/07/04 | Localised H2O2 gradients in the vasculature lumen and in the cellular cytoplasm | SFRR-E Webinar Series “Emerging leaders in redox biology” |
2023/03/14 | Adhesion modulates cell migration, erythrocyte morphology and endothelial cell Dynamics | Immuno-engineering workshop
(Turku, Finland)
|
2023/02/22 | Movimento, Difusão, Tensão e Pressão - A Física na Biologia | IX Jornadas de Engenharia Física
(Lisbon, Portugal)
|
2023/01/11 | Adhesion modulates cell migration, erythrocyte morphology and endothelial cell Dynamics | LI Winter Meeting On Statistical Physics
(Guanajuato, Mexico)
|
2023/01 | Adhesion modulates cell migration, erythrocyte morphology and endothelial cell Dynamics | Programa de Verão 2023, Laboratório Nacional de Computação Científica
(Rio de Janeiro, Brazil)
|
2022/11/10 | Adhesion modulates cell migration, erythrocyte morphology and endothelial cell Dynamics |
Universidade de Lisboa (Lisbon, Portugal)
|
2022/10/01 | Debate – Futuro da Investigação em Matéria Condensada |
Universidade do Porto (Porto, Portugal)
|
2022/09/18 | Generating Vascular Networks: a Reinforcement Learning Approach | 8th International Conference on Machine Learning, Optimization & Data Science – LOD 2022
(Siena, Italy)
|
2022/09/05 | Adhesion modulates cell migration and endothelial cell dynamics | Topology, Physics, and Chemistry of Soft Matter
(Trento, Italy)
|
2022/08/30 | A Simulação Computacional em Biologia |
Universidade do Porto (Porto, Portugal)
|
2022/06/08 | Effect of Anti-VEGF Presentation in Controlling Vascular Development | 56th Annual Scientific Meeting of ESCI
(Bari, Italy)
|
2022/05/30 | Influence of the Underlining Duct Structure in Prostate Adenocarcinoma Progression | Research School and Workshop on Mathematical Modeling of Self Organization in Medicine, Biology and Ecology
(Palermo, Italy)
|
2022/04/22 | A Simulação Computacional em Biologia | meet.Lab Coimbra
(Coimbra, Portugal)
|
2022/01 | Intratumoral VEGF Nanotrapper Reduces Gliobastoma Vascularization and Tumor Cell Mass | USACM Thematic Conference on the Role of Mathematical and Computational Modeling in Cancer Research
(United States)
|
2021/07/25 | Adhesion modulates cell morphology and migration within dense fibrous networks | 16th U.S. National Congress on Computational Mechanics
(United States)
|
2021/06/11 | Computational insights into the regulatory role of adhesion in metastatic invasion | 55th Annual Scientific Meeting of ESCI |
2021/06 | How Far can H2O2 Travel in Blood Circulation? | Virtual SMB 2021 Annual Meeting
(United States)
|
2021/06 | How Far can H2O2 Travel in Blood Circulation? | 55th Annual Scientific Meeting of ESCI |
2021/06 | Fibrinogen-Mediated Erythrocyte Adhesion | Virtual SMB 2021 Annual Meeting
(United States)
|
2021/06 | Fibrinogen-Mediated Erythrocyte Adhesion | 55th Annual Scientific Meeting of ESCI |
2021/06 | Mathematical Perspective on Keratin Aggregate Formation in Keratinocytes with the Severe K14 R125P Mutation | 55th Annual Scientific Meeting of ESCI |
2021/06 | Role of prostate gland network structure in early stage prostate cancer growth | Virtual SMB 2021 Annual Meeting |
2021/06 | Role of prostate gland network structure in early stage prostate cancer growth | 55th Annual Scientific Meeting of ESCI |
2021/06 | Three dimensional computer model of urothelium, bladder cancer development and collective tumor invasion | 55th Annual Scientific Meeting of ESCI |
2021/06 | 3D Multiscale Modeling of Chemotherapeutic Drug Delivery to Malignant Tumors | Virtual SMB 2021 Annual Meeting |
2021/06 | 3D Multiscale Modeling of Chemotherapeutic Drug Delivery to Malignant Tumors | 55th Annual Scientific Meeting of ESCI |
2021/06 | Tip cell migration in sprouting angiogenesis: The role of extracellular matrix mechanics | Virtual SMB 2021 Annual Meeting |
2021/06 | Adhesion modulates cell morphology and migration within dense fibrous networks | Virtual SMB 2021 Annual Meeting
(United States)
|
2021/03 | How Far can H2O2 Travel in Blood Circulation? | 20th Biennial Meeting of SFRR International |
2020/09/20 | Data Extraction from Mitochondrial Motility Tracking using Computational Algorithms | ESCI Virtual Meeting 2020 – COVID Edition |
2020/07/29 | Viagens Olímpicas |
Centro Cultural Penedo da Saudade
|
2020/02/28 | Mathematical Modeling of Cell Movement and Angiogenesis |
Universidade de Coimbra (Coimbra, Portugal)
|
2019/09/01 | Modeling angiogenesis and tumor growth | FEBS Advanced Lecture Course on Oncometabolism: From Conceptual Knowledge to Clinical Applications
(Luso, Portugal)
|
2019/08/07 | Keratin Dynamics and Cortical Stiffness in Mutant Cells - Computational and Experimental | Minisymposium Biologia Computacional, in Ciência 2019
(Lisbon, Portugal)
|
2019/05/29 | Growing Nanofluidic Systems: Angioenesis in Three Dimensions | Micro and Nanofluidics: from Technology to Science
(Benasque, Spain)
|
2019/05/10 | Influence of Matrix Rigidity on Blood Vessel Growth | 2nd Portuguese Condensed Matter Physics Meeting
(Porto, Portugal)
|
2019/04/01 | Mathematical modelling of migrating cells and angiogenesis | Mechanobiology of Migrating Cells - From Basic Science to the Clinic
(Coimbra, Portugal)
|
2019/04/01 | Cytoskeletal mutations and keratinocyte dynamics and elasticity | Mechanobiology of Migrating Cells - From Basic Science to the Clinic
(Coimbra, Portugal)
|
2019/04/01 | Mechanomodulation of human stem cells: a crosstalk between cytoskeleton and nucleus | Mechanobiology of Migrating Cells - From Basic Science to the Clinic
(Coimbra, Portugal)
|
2019 | Modelação Computacional de Sistemas Biológicos |
Colégio da Nossa Senhora da Assunção, Anadia, Portugal
|
2019 | Physics, Blood Vessels and Cancer |
Escola Secundária Lima de Faria, Cantanhede
|
2018/11/22 | Mathematical Modeling of Cell Movement and Angiogenesis |
University of Dundee (Dundee, United Kingdom)
|
2018/11/14 | Mathematical Modeling of Cell Movement and Angiogenesis |
Universidade do Porto (Porto, Portugal)
|
2018/11/08 | Mathematical Modeling of Cell Movement and Angiogenesis | Mechanobiology of cells in tissues in health and disease conference
(Ljubljana, Slovenia)
|
2018/10/10 | Proliferation and Movement – Modeling Angiogenesis |
Universidade de Aveiro (Aveiro, Portugal)
|
2018/08/30 | Understanding cell shape and migration – a computational study | Física 2018
(Covilhã, Portugal)
|
2018/08/30 | Simulating vessel growth with extracellular matrix remodeling | Física 2018
(Covilhã, Portugal)
|
2018/07/23 | Modelling cell shape and migration: a phase-field approach |
11th European Conference on Mathematical and Theoretical Biology (Lisbon, Portugal)
|
2018/06/11 | Mechanics and Anastomoses in Angiogenesis | Minisymposium in Multiscale in-silico modelling of cancer biophysics and therapy, 6th European Conference on Computational
Mechanics (ECCM 6) and 7th European Conference on Computational Fluid Dynamics (ECFD 7)
(Glasgow, United Kingdom)
|
2018/06/04 | Mechanics and Anastomoses in Angiogenesis | New Trends in Mathematical Biology
(Bellaterra, Spain)
|
2018/05/30 | The stiffness of keratinocytes at small deformations depends on keratin dynamics | EuroCellNet Scientific Meeting
(Brussels, Belgium)
|
2018/04/30 | Mechanics and Anastomoses in Sprouting Angiogenesis | Fields Institute Workshop “Modeling biological phenomena from nano to macro scale”
(Toronto, Canada)
|
2018/02/22 | Keratin dynamics: solving PDEs inside moving domains using phase-field methods | Measuring and Modelling Cell Migration
(Vienna, Austria)
|
2018/01/17 | Proliferation and Movement – Modeling Angiogenesis |
Universidad Carlos 3 (Leganes, Spain)
|
2018/01/10 | Proliferation and Movement – Modeling Angiogenesis |
UC Biotech (Cantanhede, Portugal)
|
2017/09/11 | Simulating vessel growth with extracellular matrix remodeling | ECCOMAS MultiBioMe
(Vienna, Austria)
|
2017/07/03 | Modeling Tension and Adhesion in Cell Movement and Angiogenesis | Session “Oncology” at Ciência 2017
(Lisbon, Portugal)
|
2017/06/29 | Angiogenic Factors Produced by Hypoxic Cells drive Anastomoses in Sprouting Angiogenesis |
University of Castilla la Mancha (Castilla la Mancha, Spain)
|
2017/06/26 | Modeling Tension and Adhesion in Tumor Cell Movement and Angiogenesis | Mini-symposium “Modelos Matemáticos Aplicados a la Biología del Cáncer” at CEDYA+CMA
(Cartagena, Spain)
|
2017/03/23 | Modeling Tension and Adhesion in Cell Movement and Angiogenesis | EuroCellNet Workshop
(Prague, Czech Republic)
|
2017 | Physics, Blood Vessels and Cancer |
Colégio Rainha D. Leonor, Caldas da Rainha
|
2016/12/05 | Angiogenic factors produced by hypoxic cells drive anastomosis in sprouting angiogenesis | Angiogenesis and Cell Motility at Mathematics of Complex Systems: from precision medicine to smart cities
(Coimbra, Portugal)
|
2016/12/05 | Mechanically-driven pattern formation in cell cultures | Angiogenesis and Cell Motility at Mathematics of Complex Systems: from precision medicine to smart cities
(Coimbra, Portugal)
|
2016/11/29 | Forces and Proliferation in Sprouting Angiogenesis |
Centrum Wiskunde & Informatica (CWI) (Amsterdam, Netherlands)
|
2016/10/17 | Tumor Angiogenesis: a Mathematical Model in Three Dimensions | Physical Biology of Tissue Morphogenesis - Mechanics, Metabolism and Signaling
(Dresden, Germany)
|
2016/09/08 | Vascular Growth in Tumor Angiogenesis: a Mathematical Model in Three Dimensions | Física 2016
(Braga, Portugal)
|
2016/06/20 | Mechanics of Sprouting Angiogenesis in Tumors | Modelling and Experiments in Drug Delivery Systems
(Coimbra, Portugal)
|
2016/06/15 | Mechanics of Sprouting Angiogenesis in Tumors | 5th International Iberian Biophysical Congress
(Porto, Portugal)
|
2016/06/05 | Mechanics of Sprouting Angiogenesis in Tumors | Mini-symposium “Tumor growth modeling and the mechanical aspects of cancer” at the Eccomas Congress 2016
(Creta, Greece)
|
2016/06/04 | Using Mathematics and Physics to Understand Vessel Growth | Session “Matemática e Ciências da Vida” at Ciência 2016
(Lisbon, Portugal)
|
2016/02/29 | Examples of Modeling Vessel Growth | Panel: Fighting Against Cancer: New Emerging Therapies, Bioengineering Week
(Lisbon, Portugal)
|
2015/12/17 | Using Mathematical Modeling to Understand Sprout Elongation in Sprouting Angiogenesis | XIII CNC Annual Meeting
(Coimbra, Portugal)
|
2015/10/21 | The force at the tip: modeling tension and proliferation in sprouting angiogenesis |
University of Lisbon (Lisbon, Portugal)
|
2015/09/09 | The force at the tip: modeling tension and proliferation in sprouting angiogenesis | II International Symposium on Basic and Clinical Investigation on Globlastoma
(Toledo, Spain)
|
2015/04/02 | Tensão e proliferação celular no crescimento de vasos sanguíneos |
Federal University of Rio Grande do Sul (Porto Alegre, Brazil)
|
2015/04/01 | Tensão e proliferação celular no crescimento de vasos sanguíneos |
Federal University of Pelotas (Pelotas, Brazil)
|
2015 | Experimental Physics without Laboratory |
Penafiel Secondary School, Penafiel
|
2015 | Physics, Biology and Cancer |
Agrupamento de Escolas de Penacova, Penacova
|
2014/09/08 | Tumor angiogenesis and vascular patterning: a mathematical model | XVI UFPel Meeting of Postgraduate
(Pelotas, Brazil)
|
2014/06/15 | Mechanical Forces in Vascular Sprouting | 9th European Conference on Mathematical and Theoretical Biology
(Gothenburg, Sweden)
|
2014 | Physics in Biology and Medicine |
Summer School for High School Students, University of Coimbra
|
2013/12/20 | Kinetics of the folding process: Important lessons from coarse-grained models | 1st Meeting of Young Researchers in Computational Structural Biology (EJIBCE)
(Porto, Portugal)
|
2013/11/20 | Mathematical Modeling of Angiogenesis - Flow, Elasticity and Experiments |
University of Coimbra (Coimbra, Portugal)
|
2013/05/27 | Mathematical Modeling of Angiogenesis - Flow, Elasticity and Experiments | Mathways into Cancer II
(Carmona, Spain)
|
2013/01/22 | Mathematical Modeling of Pathological Angiogenesis |
University of Lisbon (Lisbon, Portugal)
|
2013 | Physics, Biology and Cancer |
Agrupamento de Escolas de Ourém, Ourém
|
2012/08/07 | Growing capillaries with the phase-field model | Mini-symposium "Mathematical modeling and simulations of angiogenesis II" at the SIAM Life Sciences 2012
(San Diego, United States)
|
2012/07/10 | Forces and Flow in Growing Vascular Networks - a multidisciplinary approach |
Basque Center for Biophisics (Bilbao, Spain)
|
2012 | Experimental Physics without Laboratory | Agrupamento de Escolas de Tarouca, Tarouca |
2011/10/04 | Why do protein folding rates correlate with metrics of native topology |
University of Coimbra (Coimbra, Portugal)
|
2011/09/30 | Why do protein folding rates correlate with metrics of native topology |
University of Porto (Porto, Portugal)
|
2011/05/19 | Delivering nutrients to a tissue: blood flow and growing capillaries |
University of Bayreuth (Bayreuth, Germany)
|
2011/02/16 | Delivering nutrients to a tissue: blood flow and growing capillaries |
University of Coimbra (Coimbra, Portugal)
|
2011 | Physics, Biology and Cancer |
Camilo Castelo Branco Secondary School, Vila Real
|
2010/11/30 | Phase-Field Modeling in Tumor Growth and Angiogenesis |
University of Castilla la Mancha (Ciudad Real, Spain)
|
2010/07/07 | Phase-field modeling in tumor growth and angiogenesis | First Porto Meeting on Theory and Experiment in Nonlinear Physics
(Porto, Portugal)
|
2009/07 | Towards a model for angiogenesis | Summer school: New trends in physics and mechanics of biological systems
(Les Houches, France)
|
2008/11/19 | Towards a phase-field description of tumor angiogenesis |
University of Porto (Porto, Portugal)
|
2008/11/12 | Phase-field description of tumor angiogenesis | Phase Field Simulations: Material Science meets Biology and Medicine
(Dresden, Germany)
|
2008/10/02 | Growing Blood Vessels in a Computer | The Physics of Biological Systems: From Genes to Societies
(Lisbon, Portugal)
|
2008/04/27 | Simulation of the spinodal phase separation dynamics of the Bi-Zn system | Non-Crystalline Solids
(Porto, Portugal)
|
2008/02/27 | Nucleation phenomena in protein folding: role of chain length and native geometry |
Superior Institute of Engineering of Lisbon (Lisbon, Portugal)
|
2007/02/02 | Nucleation phenomena in protein folding: role of chain length and native geometry | Proteins in Health and Disease: from Structure to Function
(Lisbon, Portugal)
|
2007 | Nucleation phenomena in protein folding: role of chain length and native geometry |
University of Barcelona (Barcelona, Spain)
|
2007 | Nucleation phenomena in protein folding: role of chain length and native geometry |
University of Porto (Porto, Portugal)
|
2006/11/08 | Nucleation phenomena in protein folding: role of chain length and native geometry | A One Day Workshop on Protein Folding
(Lisbon, Portugal)
|
2006/03/13 | Harnessing light to create defect-free hierarchically structured ternary mixtures | APS March Meeting
(Baltimore, United States)
|
2006/03/13 | Dynamics of ternary mixtures with photosensitive chemical reactions: designing three dimensionally ordered blends | APS March Meeting
(Baltimore, Portugal)
|
2006 | Harnessing light to create hierarchically ordered, defect-free polymeric materials |
University of Lisbon (Lisbon, Portugal)
|
2006 | Como usar a luz para desenhar padrões em misturas ternárias |
University of Porto (Porto, Portugal)
|
2004 | Interface fluctuations, Burgers equations and coarsening under shear |
University of Barcelona (Barcelona, Spain)
|
2004 | Flutuações interfaciais e coarsening com tensão de corte |
University of Aveiro (Aveiro, Portugal)
|
2003 | Flutuações interfaciais e coarsening com tensão de corte |
University of Porto (Porto, Portugal)
|
Supervision
Thesis Title Role |
Degree Subject (Type) Institution / Organization |
|
---|---|---|
2016 - Current | PhD - Deep Learning to Generate Vascular Networks
Co-supervisor
|
|
2022 - 2027 | PhD - Personalized Forecast of Prostate Adenocarcinoma Growth and Proton Therapy Response
Supervisor
|
Biomedical Engineering (PhD) |
2022 - 2026 | PhD - Modeling the radiobiological effects of radiation therapy for breast cancer
Co-supervisor
|
|
2023 - 2024 | MSc - Modelling Leukocyte Adhesion
Supervisor
|
|
2023 - 2024 | MSc - Predicting Neurovascular Adaptation in Neonatal Mice
Co-supervisor
|
|
2023 - 2024 | MSc - The Cribiform Structure in Prostate Cancer
Co-supervisor
|
|
2023 - 2024 | MSc - Vascular Adaptation on Growing Adipose Tissues
Co-supervisor
|
|
2022 - 2024 | MSc - Computational model for the adhesion between red blood cells and their deformation
Supervisor
|
|
2022 - 2023 | MSc - Desenvolvimento de um modelo computacional do cancro gástrico difuso hereditário
Supervisor
|
|
2017 - 2023 | PhD - Modelling Endothelial Cells' Collective Movement and Keratin Cytoskeleton Dynamics using the Phase Field Method
Supervisor
|
|
2021 - 2022 | MSc - Desenvolvimento de um modelo computacional de desenvolvimento de um tumor gástrico difuso
Co-supervisor
|
|
2021 - 2021 | MPhil - Endothelial Cells and Blood Flow - a mechanical partnership
Supervisor
|
|
2020 - 2021 | MsC - Desenvolvimento de Modelo Computacional de Cancro na Próstata
Supervisor
|
|
2015 - 2020/07/17 | PhD - Multi-phase-field models for biological systems - from cells to vessels
Supervisor
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2019/04/01 - 2020/05/31 | Postdoc - Modeling Angiogenesis in Type 2 Diabetes Mellitus - integrating experimental and theoretical approaches
Supervisor
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2017 - 2018 | MSc - Mathematical Model for the Growth of Glioblastoma
Supervisor
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2016 - 2017 | MSc - Simulating Vessel Growth with Extracellular Matrix Remodeling
Supervisor
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2015 - 2016 | Postdoc - Coupling biological and physical processes in cell migration in 3D
Supervisor
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2015 - 2016 | MSc - Mechanically-Driven Pattern Formation in Cell Cultures
Co-supervisor
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2015 - 2016 | MSc - Model for Angiogenesis in Three Dimensions taking into account Tissue Elasticity
Supervisor
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2015 - 2016 | MSc - Modeling Axonal Growth
Supervisor
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2015 - 2016 | MSc - Contribuições para a modelação de fluxos sanguíneos em redes de capilares da retina
Co-supervisor
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2015 - 2015 | MSc - Can Peroxiredoxin-2 protect Vascular Endothelial Growth Factor Receptor-2 from Oxidation by Hydrogen Peroxide?
Co-supervisor
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2012 - 2015 | MSc - Coupling Blood Flow and Vascular Growth in Three Dimensions
Co-supervisor
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2013 - 2014 | MSc - Regulation of Blood Vessel Growth
Supervisor
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2012 - 2014 | Postdoc - Angiogenesis in Diabetic Retinopathy: Integrating Experiments and Modeling
Supervisor
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2011 - 2013 | MSc - Quantitative Characterization of Vascular Formations in Vitro and in Vivo
Co-supervisor
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2011 - 2012 | MSc - Morphology of Vascular Networks – A Computational Study
Supervisor
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2011 - 2012 | MSc - Influence of Tissue Mechanics in Blood Vessel Growth
Supervisor
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2010 - 2011 | MSc - Novel Approach to Vascular Network Modeling in 3D
Supervisor
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2008 - 2009 | MSc - Phase-Field Models for Tumor Growth in the Avascular Phase
Supervisor
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Event organisation
Event name Type of event (Role) |
Institution / Organization | |
---|---|---|
2008 - Current | For the last 16 years I teach and organize the Quark! School in Physics held at the Department of Physics of the University of Coimbra for the best and brightest high school students in the country; it also offers preparation for the International Physics Olympiad. I have a strong involvement with the Quark! school typically teaching every monthly session, and often more than one topic. I am one of the coordinators of the Quark! school since 2016. (2008) | |
2008 - Current | Yearly two one-week intensive sets of experimental and theoretical classes tailored to prepare the selected students for the International and Ibero-American Physics Olympiads. I coordinate the organization of these preparation weeks since 2014, and participate since 2008. (2008) | |
2015 - 2024 | Coordination and organization of the seven international Summer Schools in Computational Biology - From Molecules to Tissues. One and a half week summer school with between 24 and 35 students from different backgrounds (cell biologists, biochemists, biomedical engineers, chemists, physicists and mathematicians). Within these schools I also lectured and designed a one-day introductory level tutorial on Mathematical Models of Age Related Diseases and a two-day tutorial on Tools for Modeling Biological Systems. (2015) | |
2022/06/20 - 2022/06/21 | Iberian Biophysics Congress (2022) | |
2021/06/09 - 2021/06/11 | BioInformatics Mini-symposium – 55th Annual Scientific Meeting of European Society for Clinical Investigation (Virtual Edition) (2021)
Conference (Member of the Scientific Committee)
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2020/12/06 - 2020/12/12 | Ibero-American Physics Olympiad 2020 (academic committee) - International Physics competition with 18 countries. Creator of
fourth theoretical problem. (2020/12/06)
Other (Member of the Scientific Committee)
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2020/09/20 - 2020/09/20 | Minisymposium in Bioinformatics and Computational Biology for Biomedicine (2020/09/20 - 2020/09/20)
Symposium (Co-organisor)
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2019/04/01 - 2019/04/02 | Mechanobiology of Migrating Cells - from Basic Science to the Clinic (2019/04/01 - 2019/04/02)
Meeting (Co-organisor)
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2018/08/29 - 2018/09/01 | Física 2018 - 21ª Conferência Nacional de Física + 28º Encontro Ibérico para o Ensino da Física (organising and scientific
committees) (2018/08/29 - 2018/09/01)
Conference (Member of the Organising Committee)
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2018/07/21 - 2018/07/29 | International Physics Olympiad 2018 (organising committee and academic committee) - World event bringing to Lisbon students
from more that 80 countries. Author of third theoretical problem. (2018/07/21 - 2018/07/29)
Other (Member of the Organising Committee)
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2014 - 2018 | Formation Actions for High School Teachers - Organised and taught five editions of sets of career progression lectures for high school teachers on Experimental Physics. (2014) |
Event participation
Activity description Type of event |
Event name Institution / Organization |
|
---|---|---|
2011 - Current | Leader of the team representing Portugal at the International Physics Olympiad (11 events), Ibero-American Physics Olympiads (7 events) and European Physics Olympiads (2 events). It involves discussing, translating and correcting exams during a week period. It also permits to engage in fruitful discussions with colleagues from over 80 other nations on the scientific topics of the problems and on strategies to better prepare our students. |
Jury of academic degree
Topic Role |
Candidate name (Type of degree) Institution / Organization |
|
---|---|---|
2024 | Vorticity fields of active turbulence (Physical Engineering) | Francisco Miguel Marecos Militão Rosado Safara (Master)
Universidade de Lisboa, Portugal
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2023 | Influência da escolha do Mapa de Contacto no estudo do enovelamento de proteínas (Molecular Biophysics) | Larissa Maria Fernando Afonso (Master)
Universidade Estadual Paulista Júlio de Mesquita Filho, Brazil
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2023 | Texture Entropy Features for Quantification of Interstitial Lung Diseases using Multidimensional Radiological Data (Biomedical Engineering) | Miguel Mota Carvalho (Master)
Universidade de Coimbra, Portugal
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2023 | Biological damage quantification induced by Ra-223 in metastatic prostate cancer cell cultures (Biomedical Engineering) | Daniela Filipa Mendes Cancelinha (Master)
Universidade de Coimbra, Portugal
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2023 | Desenvolvimento de um modelo computacional tridimensional de comunicação celular bioelétrica e sua aplicação ao desenvolvimento de organismos e iniciação cancerígena (Physical Engineering) | António Miguel Prata Lima Cardoso (Master)
Universidade de Coimbra, Portugal
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2022/03/30 | Mathematical modelling of angiogenesis as an integrated multicellular process (Mathematics) | Daria Stepanova (PhD)
Universitat Autònoma de Barcelona, Spain
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2022/02/28 | Identifying Prostate Cancer using Neural Network Image Segmentation (Biomedical Engineering) | Leonie Apitz (Master)
Universidade de Coimbra, Portugal
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2022/02/25 | Permeation of weak acids and bases through lipid bilayers - modeling and validation of pH variation assay (Chemistry) | Margarida Machado Cordeiro (Master)
Universidade de Coimbra, Portugal
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2022 | Modelling the dynamics of cellular membranes (Physics) | Andreu Fernández i Gallén (PhD)
Universitat de Barcelona Facultat de Física, Spain
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2022 | Effects of Ra-223 in cellular models of metastatic prostate cancer (Biomedical Engineering) | Carolina Daniela Santos Fernandes (Master)
Universidade de Coimbra, Portugal
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2022 | A stochastic model of malaria transmission (Complexity Sciences) | João Fernando Sequeira (PhD)
ISCTE-Instituto Universitário de Lisboa, Portugal
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2021/12/09 | Neuronal inhibition and noise in perceptual decision-making (Biomedical Engineering [PhD project]) | Maria Inês Cravo (Other)
Universidade de Coimbra, Portugal
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2021/05/06 | Mechanomodulation of the mesenchymal stem cell proteome: elucidation of mechanisms and evaluation as a therapeutic opportunity (Biomedicine and Experimental Biology) | Catarina de Barros Pinto Salvador Domingues (PhD)
Universidade de Coimbra Centro de Inovação em Biomedicina e Biotecnologia, Portugal
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2020/07/24 | Exploring Deep Learning Architectures and Reliability of Several Datasets to Predict Protein-Protein Interactions (Biomedical Engineering) | Luís Pedro Baptista Silva (Master)
Universidade de Coimbra, Portugal
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2019/11/26 | Disclosing the aggregation mechanism of ß2-microglobulin in amyloid disease (Biology) | Rui João de Sousa Loureiro (PhD)
Universidade de Lisboa Faculdade de Ciências, Portugal
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2019/09/23 | Characterization of the Interaction and Permeation of Drug-Like Molecules Through Membrane Models including P-Glycoprotein (Neurobiology) | Susana Vieira Pinto da Cunha (Master)
Universidade de Coimbra, Portugal
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2018/11/15 | Effects of Confinement in the Folding of Knotted Proteins (Physics) | João Nuno Correia Especial (Master)
Universidade de Lisboa Faculdade de Ciências, Portugal
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2018/10/03 | A mathematical model of the phosphoinositide pathway in human pulmonary epithelial cells (Biology) | Daniel Vigário Olivença (PhD)
Universidade de Lisboa Faculdade de Ciências, Portugal
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2016/12/09 | Active and Passive Defenses against Oxidative Stress: a computational study (Biomedicine and Experimental Biology) | Rui Manuel Vicente Benfeitas (PhD)
Universidade de Coimbra, Portugal
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2015/09/05 | Modeling Physiological Systems – a Computational and hybrid approach (Biomedical Engineering) | Diogo Faustino de Noronha Osório (Master)
Universidade de Coimbra, Portugal
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2015/07/23 | Creating Evaluation Functions for Oncological Diseases based on PET/CT (Biomedical Engineering) | Mariana Antunes Nogueira (Master)
Universidade de Coimbra, Portugal
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2014/09/22 | Development and implementation of software for parametric quantification in perfusion studies of the liver (Biomedical Engineering) | Ana Mafalda Sanches Teixeira (Master)
Universidade de Coimbra, Portugal
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2013/09/18 | Search acceleration methods for large retinal image databases (Biomedical Engineering) | Diana Craveiro Mourão (Master)
Universidade de Coimbra, Portugal
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2013/09/16 | The role of miR-21 in the bone marrow microenvironment (Cellular and Molecular Biology) | Celina Maria dos Reis Parreira (Master)
Universidade de Coimbra, Portugal
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2009/09/17 | 25-Hydroxycholesterol increases IL-8 production in retinal pigment epithelial cells by activation of PI3K and ERK pathways (Biomedical Engineering) | Eliana Filipa da Silva Murteira (Master)
Universidade de Coimbra, Portugal
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2008/11/28 | Shapes in Cells. Dynamic instabilities, morphology, and curvature in biological membranes (Physics) | Felix Campelo (PhD)
Universitat de Barcelona Departament de Química-Física, Spain
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Course / Discipline taught
Academic session | Degree Subject (Type) | Institution / Organization | |
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2010 - 2024 | Over 14 years of lecturing courses at PhD, master and undergraduate levels. Examples of courses I taught are: Quantitative Modeling in Biology, Biological Physics, Computational Biology, Statistical Physics, Advanced Statistical Physics, Computational Methods for Biomedicine, Atomic Physics, Thermodynamics and Transfer Processes, Electromagnetism, Condensed Matter Physics, Computers and Programming, Computational Modeling, Phase Transitions and Group Theory, Applied Physics, Physics (zeroth year), General Physics | Universidade de Coimbra, Portugal |
Evaluation committee
Activity description Role |
Institution / Organization | Funding entity | |
---|---|---|---|
2004 - Current | Reviewer of manuscripts in several journals including PLoS Computational Biology, Cancer Science, PLoS ONE, Physical Review E, Physical Biology, Journal of Theoretical Biology, Bulletin of Mathematical Biology, Mathematical Biosciences, Mathematical Biosciences and Engineering, Cell Proliferation, Health and Technology, Biomechanics and Modeling in Mechanobiology, Journal of Engineering Mathematics, Bio-Algorithms and Med-Systems, Computational and Structural Biotechnology Journal, Colloidal and Polymer Science. |
Interview (tv / radio show)
Program | Topic | |
---|---|---|
2012 - 2012 | República do Saber: Report on research carried out within my group (TV) | |
2011 - 2011 | Bom Dia Portugal: Live interview (TV) | |
2011 - 2011 | Mundo Novo: Report on research carried out in my group (radio) |
Journal scientific committee
Journal title (ISSN) | Publisher | |
---|---|---|
2016 - Current | Frontiers in Physics |
Distinctions
Award
2024 | Host for New Talents in Science (Physics section)
Fundacao Calouste Gulbenkian, Portugal
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2022 | Host for New Talents in Science (Physics section)
Fundacao Calouste Gulbenkian, Portugal
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2007 | Estimulo a Investigacao: "The Role of Surface Morphology in Tumor Growth
Fundacao Calouste Gulbenkian, Portugal
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1999 | Professor Moreira de Araujo: Best Student of final year of Physics degree, U. Porto |
1999 | Eng. Antonio de Almeida: Best Student of Physics degree, U. Porto
Fundacao Engenheiro Antonio de Almeida, Portugal
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1995 | Lions V. N. Famalicao: Best student of last year of secundary school (ESCCB) |
1994 | Winner of the Portuguese Physics Olimpiad |
Other distinction
2013 | FCT Principal Researcher
Fundação para a Ciência e a Tecnologia, Portugal
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