
Curriculum Vitae
Sarela Garcia Santamarina
For her PhD, Dr. Garcia-Santamarina joined Professor Elena Hidalgo laboratory [University Pompeu Fabra (Barcelona)] where
she worked on mechanisms of oxidative stress signaling and toxicity in fission yeast. There, she focused on understanding
how oxidative stress triggers signaling cascades, how cells cope with the excess of oxidants, and which are their toxic effects
in proteins, using the fission yeast as a model organism. After her PhD, she joined the laboratory of Professor Dennis J.
Thiele at Duke University (USA) for her first postdoc. In the Thiele lab, she worked with a human fungal pathogen, Cryptococcus
neoformans, in a fungal pathogen-host interface context. Her postdoc focused on understanding how C. neoformans keeps metal
homeostasis during infection. The host immune system uses transition metals, essential for all living organisms but toxic
when excess, as a first line of defense against pathogens [both metal deprivation (“nutritional immunity”) and metal bombardment
(toxicity)]. As part of her postdoctoral work, she identified the regulatory mechanisms important for C. neoformans to thrive
in environments that rapidly fluctuate in copper concentrations, such as within the host, and characterized two novel proteins
with roles in copper detoxification and copper import, respectively, which are fungal virulence determinants.
She moved to EMBL (Heidelberg) in 2018, for a second postdoc, with a prestigious Interdisciplinary Marie Curie fellowship
(EIPOD). At EMBL, she had shared appointment in the laboratories of Dr. Athanasios Typas, Dr. Kiran R. Patil and Prof. Dr.
Peer Bork, where she became an expert in the microbiome field. There, she optimized an in vitro microbiomics platform to answer
whether bacterial members of the gut microbiota behave the same against external perturbations (drugs) when they are alone
or as part of a community. By comparing the species' behavior in isolation and in the community, she discovered that frequently
emergent phenotypic traits are only visible in the community context. She followed up these with metabolomics and in-depth
molecular biology and biochemistry experiments to dissect how a particular drug becomes inactive in microbial consortia. In
toto, she uncovered that a combination of drug metabolism, drug bioaccumulation and interspecies interactions are the primary
drivers of microbial community traits.
As a new group leader at ITQB Nova, Dr. Garcia-Santamarina research goal is to deepen into the mechanisms of gut microbial
metabolism at the gene and strain level in a competitive environment, namely other gut microbes and host cells. Gut microbial
metabolism has developed to take advantage of any metabolite as a potential energy source, and therefore is highly hydrolytic
and reductive, mostly relying on metalloenzymes especially suited for electron transfer reactions in anaerobiosis. Thus, in
the case of the gut microbiota, metalloenzymes are involved in carbohydrate degradation, pathogen colonization resistance,
vitamins and cofactors biosynthesis, reductive amino acid metabolism, or xenobiotics metabolism. She plans to combine her
expertise in the metal’s biology field with her knowledge in the microbiome field to set-up experimental pipelines that lead
to an understanding of the role of metals in driving gut microbial metabolism and its implications in human health and disease,
e.g. inflammatory diseases, cancer, aging, or genetic diseases that course with host metal overloading or defects.
Identification
Personal identification
- Full name
- Sarela Garcia Santamarina
Citation names
- Garcia-Santamarina, Sarela
Author identifiers
- Ciência ID
- 7A13-8007-7841
- ORCID iD
- 0000-0002-0611-7918
Email addresses
- sarela.santamarina@itqb.unl.pt (Professional)
Telephones
- Telephone
-
- (+351) 214469 Ext.: 314 (Professional)
Addresses
- ITQB NOVA, Av. da Republica, 2780-157, Oeiras, Oeiras, Portugal (Professional)
Websites
- https://www.itqb.unl.pt/research/biology/human-microbiota-xenobiotics-interactions (Professional)
- https://hmxilab.wixsite.com/human-microbiota-lab (Professional)
Knowledge fields
- Natural sciences - Biological Sciences
Languages
Language | Speaking | Reading | Writing | Listening | Peer-review |
---|---|---|---|---|---|
Spanish; Castilian (Mother tongue) | |||||
Galician (Mother tongue) | |||||
Catalan | Advanced (C1) | Proficiency (C2) | Advanced (C1) | Proficiency (C2) | |
English | Proficiency (C2) | Proficiency (C2) | Proficiency (C2) | Proficiency (C2) | Proficiency (C2) |
German | Intermediate (B1) | Intermediate (B1) | Intermediate (B1) | Intermediate (B1) |
Education
Degree | Classification | |
---|---|---|
2008/01/01 - 2013/06/14
Concluded
|
Biomedicine (Doctor of Philosophy)
Universitat Pompeu Fabra, Spain
"Control of redox homeostasis: environmental and genetic regulation of oxidative protein damage in Schizosaccharomyces pombe" (THESIS/DISSERTATION)
|
|
2006/09/25 - 2007/09/14
Concluded
|
Molecular Biology of Infectious Diseases (Master)
London School of Hygiene & Tropical Medicine, United Kingdom
"Characterization of a PHD-finger acetyltransferase in Trypanosoma
brucei" (THESIS/DISSERTATION)
|
|
2002/06/28 - 2006/05/08
Concluded
|
Chemical Pathologist (Título de especialista)
Hospital Universitari de Bellvitge, Spain
|
|
2005/01/15 - 2005/06/18
Concluded
|
International Cooperation Agent (120 h) (Postgraduate Certificate)
Universitat Politècnica de Catalunya, Spain
|
|
2003 - 2004
Concluded
|
Biochemistry and Molecular Biology (DEA)
Universitat Autònoma de Barcelona, Spain
"Inflammatory bowel disease and apoptosis: Caspase-3 activity
determination in patients with Crohn’s disease and ulcerative colitis" (THESIS/DISSERTATION)
|
|
2003 - 2004
Concluded
|
Statistical Analysis in Biomedicine (280 h) (Postgraduate Certificate)
Universitat Autònoma de Barcelona, Spain
|
|
1996/09/01 - 2001/06/30
Concluded
|
Chemistry (Bachelor)
Major in Organic Chemistry
Universidade de Santiago de Compostela, Spain
"Solid phase synthesis of peptides and depsipeptides" (THESIS/DISSERTATION)
|
Affiliation
Science
Category Host institution |
Employer | |
---|---|---|
2021/10/01 - Current | Auxiliary Researcher (Research) | Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal |
2018/05/15 - 2021/08/31 | Postdoc (Research) | European Molecular Biology Laboratory, Germany |
European Molecular Biology Laboratory, Germany | ||
2013/11/01 - 2018/04/15 | Postdoc (Research) | Duke University, United States |
2008/01/01 - 2013/07/31 | Research Trainee (Research) | Universitat Pompeu Fabra, Spain |
Universitat Pompeu Fabra, Spain |
Others
Category Host institution |
Employer | |
---|---|---|
2002/06/28 - 2006/05/08 | Chemical Pathologist (Health care specialist) | Hospital Universitari de Bellvitge, Spain |
Hospital Universitari de Bellvitge, Spain |
Projects
Grant
Designation | Funders | |
---|---|---|
2024/02/01 - Current | MPS NOVA Hub: Advanced Microphysiological Systems and Pluripotent Stem Cell Technologies to Unveil Chronic Disease Mechanisms
and Host-Microbe Interactions
101159729
Principal investigator
Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal
|
Ongoing
|
2023/04/01 - 2024/03/30 | Mostmicro exploratory project: Unravelling ecological interactions leading to antimicrobial tolerance in polybacterial communities
of the human gut microbiota.
UIDP/04612/2020
Principal investigator
Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal
|
Fundação para a Ciência e a Tecnologia
Ongoing
|
2023/04/30 - 2023/06/30 | Determination of transition metal exchanges at the host-gut microbiota interface
9967
Principal investigator
Universitätsklinikum Jena, Germany
|
Concluded
|
2018/05/15 - 2021/08/31 | Probing the impact of xenobiotics on gut microbial communities
EC664726 (to Sarela Garcia-Santamarina)
EMBL Core Funding (to Athanasios Typas)
Post-doc Fellow
European Molecular Biology Laboratory, Germany
|
EU Framework Programme for Research and Innovation Marie Sklodowska-Curie Actions
Concluded
|
2008/01/01 - 2013/07/31 | Isolation and characterization of new models of endogenous oxidative stress in Schizosaccharomyces pombe
CSD 2007-0020 (to Elena Hidalgo)
BFU2009-06933 (to Elena Hidalgo)
BFU2012-32045 (to Elena Hidalgo)
PhD Student Fellow
Universitat Pompeu Fabra, Spain
|
Concluded
|
Contract
Designation | Funders | |
---|---|---|
2023/04/01 - 2029/03/31 | Establishing the impact of transition metal homeostasis in the gut microbiota composition and function (INTERACTION)
Principal investigator
Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal
|
Fundação para a Ciência e a Tecnologia
Ongoing
|
2013/11/01 - 2018/04/15 | Copper homeostasis mechanisms at the host fungal pathogen interface in Cryptococcus neoformans
GM041840 (to Dennis J Thiele)
Post-doc
Duke University, United States
|
National Institutes of Health
Concluded
|
Outputs
Publications
Conference poster |
|
Journal article |
|
Magazine article |
|
Preprint |
|
Other
Other output |
|
Activities
Oral presentation
Presentation title | Event name Host (Event location) |
|
---|---|---|
2023/09/21 | Emergence of community behaviours in the gut microbiota upon drug treatment | EMBO | EMBL Symposium: The Human Microbiome
(Heidelberg, Germany)
|
2022/08/16 | Common Therapeutics Induce Emergent Behaviours in Synthetic Gut Bacterial Communities | ISME18: 18th International Symposium on Microbial Ecology
(Lausanne, Switzerland)
|
2022/03/03 | Common Therapeutics Induce Emergent Behaviours in synthetic gut bacterial communities | 11th Bioinformatics Open Days Edition
Universidade do Minho (Braga, Portugal)
|
2021/11/04 | Common therapeutics induce emergent behaviors on gut bacterial communities | Human Gut Microbiome Summit
Curtis & Wyss (Virtual, Spain)
|
2020/12/28 | Establishing the Impact of commonly used drugs on in vitro gut microbial communities | XI Meeting of Young Investigators Living Abroad
Museos Científicos – Ayuntamiento de A Coruña (Virtual)
|
2020/05/19 | Establishing the impact of commonly used drugs on in vitro gut microbial communities | Virtual Microbiome Summit
Lucy Mailing (United States)
|
2019/07/18 | Probing the impact of drugs on in vitro gut microbial communities | Cold Spring Harbor Laboratory Conference in Microbiome
Cold Spring Harbor (Cold Spring Harbor, United States)
|
2016/06/05 | Iron sulfur cluster proteins as potential targets for copper toxicity in the human funal pathogen Cryptococcus neoformans | FASEB Science Research Conference on Trace Elements in Biology and Medicine
FASEB Federation of American Societies for Experimental Biology (Bozeman, Montana, United States)
|
2011/03/28 | The disulfide proteome in fission yeast-optimization of an ICAT based method to identify H2O2 oxidized proteins | Physiology and pathophysiology of free radicals
Universitat de Valencia; Rosasnet; Spanish group on free radicals (Valencia, Spain)
|
2010/02/11 | Analysis of reversible and irreversible protein modifications upon oxidsative stress in Schizosaccharomyces pombe by proteomic approaches | II Jornadas Bienales de Jóvenes Investigadores en Proteómica
EPRO Sociedad Española de Proteómica (Cordoba, Spain)
|
Supervision
Thesis Title Role |
Degree Subject (Type) Institution / Organization |
|
---|---|---|
2024/01/01 - Current | INVESTIGATING THE ROLE OF GUT MICROBIOTA IN HOST METAL HOMEOSTASIS
Supervisor
|
PhD in Molecular Biosciences (PhD)
Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal
|
2023/09/01 - Current | Establishing the impact of transition metals on gut microbiota pathogen colonization resistance
Co-supervisor
|
MSc in Molecular Genetics and Biomedicine (Master)
Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal
|
2023/03/01 - Current | Development of microbial community simulation methods to characterize and analyze the effects of metal concentrations on pathogen
silencing/promotion
Co-supervisor
|
MSc in Bioinformatics (Master)
Universidade do Minho, Portugal
|
2022/10/01 - 2023/03/31 | Study of iron effects on commensals bacteria of the gut microbiome and enteropathogens
Co-supervisor
|
MSc in Translacional Biomedical Sciences (Master) |
Event organisation
Event name Type of event (Role) |
Institution / Organization | |
---|---|---|
2023/09/01 - Current | Evolving Microbes and Global Health (2024/10/22 - 2024/10/25)
Conference (Co-organisor)
|
Instituto Gulbenkian de Ciência, Portugal Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal Universidade Católica Portuguesa, Portugal |
2023/01 - Current | ITQB NOVA Pilot Mentoring Program addressed to PIs and postdocs for their career development (2023/01/01)
Other (Member of the Organising Committee)
|
Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal |
2020/09/09 - 2020/09/09 | EMBL conference: "The impact of Covid19 crisis on women in science -challenges and solutions (2020/09/09 - 2020/09/09)
Conference (Co-organisor)
|
European Molecular Biology Laboratory, Germany |
Event participation
Activity description Type of event |
Event name Institution / Organization |
|
---|---|---|
2022/10/10 - 2022/10/16 | Science Quiz outreach activity at FIC.A Science International Festival
Exhibition
|
|
2022/10/10 - 2022/10/16 | Speaker at the outreach SoapBox Science activity @ FIC.A Science International Festival
Exhibition
|
|
2022/01/11 - 2022/01/11 | Outreach Lecture: Intestinal Microbiota and Human Health
Seminar
|
Semana de Procariontes
Universidad Autónoma de la Ciudad de México, Mexico
|
2021/09/24 - 2021/09/24 | Voluntary
Exhibition
|
Noite Europea dos Investigadores
Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal
|
2019/11/15 - 2019/11/15 | Outreach Lecture: Human microbiome: who, why, and how?
Festival
|
InsOmnia Medicae
Heidelberg University, United States
|
2019/09/27 - 2019/09/27 | Voluntary
Exhibition
|
Night of Research
European Molecular Biology Laboratory, Germany
|
2018/09/28 - 2018/09/28 | Voluntary
Exhibition
|
Night of Research
European Molecular Biology Laboratory, Germany
|
Jury of academic degree
Topic Role |
Candidate name (Type of degree) Institution / Organization |
|
---|---|---|
2023/12/05 | Study of Iron Metabolism in the Human Pathogen Acinetobacter baumanii
(Thesis) Main arguer
|
Beatriz Soraia Nunes Moniz (Master)
Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal
|
2023/03/31 | Exploring commensal streptococci to prevent Streptococcus pneumoniae colonization
Thesis Member
|
Sara de Almeida Handem (PhD)
Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal
|
2020/01/31 | Role of the Protein Quality Control System in Basal and Stress Conditions in Fission Yeast
Thesis Member
|
Luis Marte (PhD)
Universitat Pompeu Fabra, Spain
|
Ad Hoc journal article review
Journal title (ISSN) | Publisher | |
---|---|---|
2022/01/24 - 2022/01/24 | Nature Microbiology (2058-5276) | |
2020/08/22 - 2020/08/22 | Antioxidants (2076-3921) | |
2020/01/27 - 2020/01/27 | Molecular Microbiology (1365-2958) |
Association member
Society Organization name | Role | |
---|---|---|
2023/11/01 - Current | EUROoCS European Organ-On-Chip Society | |
2021/10/20 - Current | Sociedade Portuguesa de Microbiologia | |
2021/01/01 - 2022/01/01 | Microbiology Society |
Course / Discipline taught
Academic session | Degree Subject (Type) | Institution / Organization | |
---|---|---|---|
2023/07 - Current | Symbnet PhD Summer School on Host-Microbe Symbiosis | (Outros) | Instituto Gulbenkian de Ciência, Portugal |
2023/04 - Current | Co-coordinator of the PhD curricular unit "Ecology and Evolution of Microbial Populations" | PhD in Molecular Biosciences (Curso de doutoramento (conclusão de unidades curriculares)) | Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal |
2020/06/01 - 2021/03/30 | Metabolomics & Proteomics, 150 h | Metabolomics & Proteomics (Master) | CEU Universidad Cardenal Herrera, Spain |
2012 - 2013 | Laboratory Teaching Assistant, 50 h | Human Biology (Bachelor) | Universitat Pompeu Fabra, Spain |
2011 - 2012 | Laboratory Teaching Assistant, 50 h | Human Biology (Bachelor) | Universitat Pompeu Fabra, Spain |
2010 - 2011 | Laboratory Teaching Assistant, 60 h | Genetic Engineering and Biotechnology Applications (Bachelor) | Universitat Pompeu Fabra, Spain |
Evaluation committee
Activity description Role |
Institution / Organization | Funding entity | |
---|---|---|---|
2023/01/01 - Current | Grant evaluator for the ETH Zurich Research Commission
Evaluator
|
ETH Zürich Foundation | |
2023/01/01 - Current | Grant evaluator for the UK Research and Innovation Agency
Evaluator
|
UK Research and Innovation | |
2022/01/01 - Current | Grant evaluator for the Swiss National Science Foundation
Evaluator
|
Schweizerischer Nationalfonds zur Förderung der wissenschaftlichen Forschung |
Interview (newspaper / magazine)
Activity description | Newspaper / Forum | |
---|---|---|
2021/02/28 | Interview about my research path and findings | El Faro de Vigo, Spain |
2015/03/28 | Interview about my research pathway and findings | El Progreso de Lugo (Spain) |
Interview (tv / radio show)
Program | Topic | |
---|---|---|
2021/09/29 - 2021/09/29 | Ciencia e tal | Research path and findings |
2021/02/13 - 2021/02/13 | Semprengalicia | Research path and findings |
Mentoring / Tutoring
Topic | Student name | |
---|---|---|
2023/02/01 - 2023/03/31 | Establishing Micronutrients Impact on the Gut Microbiome Function | Daniela Canhao |
2023/02/01 - 2023/03/30 | Establishing micronutrients impact on the gut microbiome function | Amélia Marinheiro |
2022/02/07 - 2022/04/30 | Human Microbiota - Xenobiotics Interactions | Catarina Oliveira |
2022/02/07 - 2022/04/01 | Human Microbiota - Xenobiotic Interactions | Diogo Neves |
2020/01/01 - 2020/06/30 | Human microbiota - drug interactions | Tim Treis |
2019/06/15 - 2019/08/15 | Human gut microbiota - drug interactions | Allison Schiffman |
2017/07/01 - 2017/09/30 | Cu homeostasis in Cryptococcus neoformans | Yudong Sun |
2017/03/01 - 2017/06/30 | Cu homeostasis in Cryptococcus neoformans | Michael Hoy |
2017/02/01 - 2017/02/28 | Molecular Biology Tools in Cryptococcus neoformans | Yeonseon Lee |
2016/01/01 - 2016/12/31 | Copper homeostasis in Cryptococcus neoformans | Darius Jonasch |
Distinctions
Award
2020 | Award to the Presented Research with the Greatest Social Impact by Hijos de Rivera SSA |
2014 | Travel and accommodation award for Molecular Mycology course
Marine Biological Laboratory, United States
|
2006 | Fees and monthly stipend award for MSc Molecular Biology of Infectious Diseases at LSHTM
Fundación Pedro Barrié de la Maza, Spain
|
2001 | Travel and accommodation award Intercampus of International Cooperation
Gobierno de Espana Ministerio de Asuntos Exteriores y de Cooperación, Spain
|
Other distinction
2018 | Marie-Curie EIPOD3 Interdisciplinary Postdoctoral Fellowship
European Molecular Biology Laboratory, Germany
European Commission Marie Sklodowska-Curie Actions, Belgium |
2010 | Salary award PhD Studentship
Universitat Pompeu Fabra, Spain
|