| Journal article |
- Caroline T. Cheung; Thao-vi Nguyen; Aurélie Le Cam; Amélie Patinote; Laurent Journot; Christelle Reynes; Julien Bobe. "What
makes a bad egg? Egg transcriptome reveals dysregulation of translational machinery and novel fertility genes important for
fertilization". BMC Genomics 20 1 (2019): https://doi.org/10.1186/s12864-019-5930-8.
10.1186/s12864-019-5930-8
- Qiaowei Pan; Catherine L. Peichel; Romain Feron; Ayaka Yano; René Guyomard; Elodie Jouanno; Estelle Vigouroux; et al. "Identification
of the master sex determining gene in Northern pike (Esox lucius) reveals restricted sex chromosome differentiation". PLOS
Genetics 15 8 (2019): e1008013-e1008013. https://doi.org/10.1371/journal.pgen.1008013.
10.1371/journal.pgen.1008013
- Emilie Cardona; Jérôme Bugeon; François Guivarc'h; Lionel Goardon; Stéphane Panserat; Laurent Labbé; Geneviève Corraze; Sandrine
Skiba-Cassy; Julien Bobe. "Positive impact of moderate food restriction on reproductive success of the rainbow trout Oncorhynchus
mykiss". Aquaculture 502 (2019): 280-288. https://doi.org/10.1016/j.aquaculture.2018.12.057.
10.1016/j.aquaculture.2018.12.057
- Caroline T. Cheung; Jérémy Pasquier; Aurélien Bouleau; Thaovi Nguyen; Franck Chesnel; Yann Guiguen; Julien Bobe. "Double maternal-effect:
duplicated nucleoplasmin 2 genes, npm2a and npm2b, with essential but distinct functions are shared by fish and tetrapods".
BMC Evolutionary Biology 18 1 (2018): https://doi.org/10.1186/s12862-018-1281-3.
10.1186/s12862-018-1281-3
- Stéphanie Gay; Manfred Schartl; Jérôme Bugeon; Amine Bouchareb; Laure Henry; Clara Delahaye; Fabrice Legeai; et al. "MiR-202
controls female fecundity by regulating medaka oogenesis". PLOS Genetics 14 9 (2018): e1007593-e1007593. https://doi.org/10.1371/journal.pgen.1007593.
10.1371/journal.pgen.1007593
- Caroline T. Cheung; Amélie Patinote; Yann Guiguen; Julien Bobe. "foxr1 is a novel maternal-effect gene in fish that is required
for early embryonic success". PeerJ (2018): https://doi.org/10.7717/peerj.5534.
10.7717/peerj.5534
- Laury Lescat; Amaury Herpin; Brigitte Mourot; Vincent Véron; Yann Guiguen; Julien Bobe; Iban Seiliez. "CMA restricted to mammals
and birds: myth or reality?". Autophagy 14 7 (2018): 1267-1270. https://doi.org/10.1080/15548627.2018.1460021.
10.1080/15548627.2018.1460021
- Braasch I; Bobe J; Guiguen Y; Postlethwait JH. "Reply to: 'Subfunctionalization versus neofunctionalization after whole-genome
duplication'.". Nature genetics (2018): http://europepmc.org/abstract/med/29955179.
10.1038/s41588-018-0163-3
- Yilmaz O; Patinote A; Nguyen T; Bobe J. "Multiple vitellogenins in zebrafish (Danio rerio): quantitative inventory of genes,
transcripts and proteins, and relation to egg quality.". Fish physiology and biochemistry (2018): http://europepmc.org/abstract/med/29882000.
10.1007/s10695-018-0524-y
- Bobe, Julien. "Evolution of gene expression after whole-genome duplication: New insights from the spotted gar genome.". Journal
of experimental zoology. Part B, Molecular and developmental evolution (2017): http://europepmc.org/abstract/med/28944589.
10.1002/jez.b.22770
- Diana Zala; Uwe Schlattner; Thomas Desvignes; Julien Bobe; Aurélien Roux; Philippe Chavrier; Mathieu Boissan. "The advantage
of channeling nucleotides for very processive functions [version 2; referees: 3 approved]". (2017): https://f1000research.com/articles/6-724/v2.
10.12688/f1000research.11561.2
- Diana Zala; Uwe Schlattner; Thomas Desvignes; Julien Bobe; Aurélien Roux; Philippe Chavrier; Mathieu Boissan. "The advantage
of channeling nucleotides for very processive functions". F1000Research 6 (2017): 724-724. https://doi.org/10.12688/f1000research.11561.1.
10.12688/f1000research.11561.1
- Chaube R; Rawat A; Inbaraj RM; Bobe J; Guiguen Y; Fostier A; Joy KP. "Identification and characterization of a catechol-o-methyltransferase
cDNA in the catfish Heteropneustes fossilis: Tissue, sex and seasonal variations, and effects of gonadotropin and 2-hydroxyestradiol-17ß
on mRNA expression.". (2017): http://europepmc.org/abstract/med/27939670.
10.1016/j.ygcen.2016.12.001
- Marandel L; Panserat S; Plagnes-Juan E; Arbenoits E; Soengas JL; Bobe J. "Evolutionary history of glucose-6-phosphatase encoding
genes in vertebrate lineages: towards a better understanding of the functions of multiple duplicates.". (2017): http://europepmc.org/abstract/med/28464795.
10.1186/s12864-017-3727-1
- Zarski D; Nguyen T; Le Cam A; Montfort J; Dutto G; Vidal MO; Fauvel C; Bobe J. "Transcriptomic Profiling of Egg Quality in
Sea Bass (Dicentrarchus labrax) Sheds Light on Genes Involved in Ubiquitination and Translation.". (2017): http://europepmc.org/abstract/med/28181038.
10.1007/s10126-017-9732-1
- Bouchareb A; Le Cam A; Montfort J; Gay S; Nguyen T; Bobe J; Thermes V. "Genome-wide identification of novel ovarian-predominant
miRNAs: new insights from the medaka (Oryzias latipes).". (2017): http://europepmc.org/abstract/med/28071684.
10.1038/srep40241
- Cabau C; Escudié F; Djari A; Guiguen Y; Bobe J; Klopp C. "Compacting and correcting Trinity and Oases RNA-Seq de novo assemblies.".
(2017): http://europepmc.org/abstract/med/28224052.
10.7717/peerj.2988
- Bobe, Julien. "Scrambled eggs: Proteomic portraits and novel biomarkers of egg quality in zebrafish (Danio rerio).". PloS
one (2017): http://europepmc.org/abstract/med/29145436.
10.1371/journal.pone.0188084
- Pasquier J; Cabau C; Nguyen T; Jouanno E; Severac D; Braasch I; Journot L; et al. "Gene evolution and gene expression after
whole genome duplication in fish: the PhyloFish database.". (2016): http://europepmc.org/abstract/med/27189481.
10.1186/s12864-016-2709-z
- Braasch I; Gehrke AR; Smith JJ; Kawasaki K; Manousaki T; Pasquier J; Amores A; et al. "Corrigendum: The spotted gar genome
illuminates vertebrate evolution and facilitates human-teleost comparisons.". (2016): http://europepmc.org/abstract/med/27230688.
10.1038/ng0616-700c
- Braasch I; Gehrke AR; Smith JJ; Kawasaki K; Manousaki T; Pasquier J; Amores A; et al. "The spotted gar genome illuminates
vertebrate evolution and facilitates human-teleost comparisons.". (2016): http://europepmc.org/abstract/med/26950095.
10.1038/ng.3526
- Juanchich A; Bardou P; Rué O; Gabillard JC; Gaspin C; Bobe J; Guiguen Y. "Characterization of an extensive rainbow trout miRNA
transcriptome by next generation sequencing.". (2016): http://europepmc.org/abstract/med/26931235.
10.1186/s12864-016-2505-9
- Geffroy B; Guilbaud F; Amilhat E; Beaulaton L; Vignon M; Huchet E; Rives J; et al. "Sexually dimorphic gene expressions in
eels: useful markers for early sex assessment in a conservation context.". (2016): http://europepmc.org/abstract/med/27658729.
10.1038/srep34041
- Bertho S; Pasquier J; Pan Q; Le Trionnaire G; Bobe J; Postlethwait JH; Pailhoux E; et al. "Foxl2 and Its Relatives Are Evolutionary
Conserved Players in Gonadal Sex Differentiation.". (2016): http://europepmc.org/abstract/med/27441599.
10.1159/000447611
- Marivin E; Mourot B; Loyer P; Rime H; Bobe J; Fostier A. "Transfection of isolated rainbow trout, Oncorhynchus mykiss, granulosa
cells through chemical transfection and electroporation at 12°C.". (2015): http://europepmc.org/abstract/med/25957917.
10.1016/j.ygcen.2015.03.012
- Desvignes T; Nguyen T; Chesnel F; Bouleau A; Fauvel C; Bobe J. "X-Linked Retinitis Pigmentosa 2 Is a Novel Maternal-Effect
Gene Required for Left-Right Asymmetry in Zebrafish.". (2015): http://europepmc.org/abstract/med/26134862.
10.1095/biolreprod.115.130575
- Rime H; Nguyen T; Ombredane K; Fostier A; Bobe J. "Effects of the anti-androgen cyproterone acetate (CPA) on oocyte meiotic
maturation in rainbow trout (Oncorhynchus mykiss).". (2015): http://europepmc.org/abstract/med/25911576.
10.1016/j.aquatox.2015.04.009
- Wargelius A; Furmanek T; Montfort J; Le Cam A; Kleppe L; Juanchich A; Edvardsen RB; Taranger GL; Bobe J. "A comparison between
egg trancriptomes of cod and salmon reveals species-specific traits in eggs for each species.". (2015): http://europepmc.org/abstract/med/25908546.
10.1002/mrd.22487
- Julien Bobe. "Egg quality in fish: Present and future challenges". Animal Frontiers 5 1 (2015): 66-72. https://doi.org/10.2527%2Faf.2015-0010.
10.2527/af.2015-0010
- Fernández-Díez C; González-Rojo S; Montfort J; Le Cam A; Bobe J; Robles V; Pérez-Cerezales S; Herráez MP. "Inhibition of zygotic
DNA repair: transcriptome analysis of the offspring in trout (Oncorhynchus mykiss).". (2015): http://europepmc.org/abstract/med/25433028.
10.1530/rep-14-0382
- Bouleau A; Desvignes T; Traverso JM; Nguyen T; Chesnel F; Fauvel C; Bobe J. "Maternally inherited npm2 mRNA is crucial for
egg developmental competence in zebrafish.". (2014): http://europepmc.org/abstract/med/25009208.
10.1095/biolreprod.114.119925
- Marivin E; Yano A; Guérin A; Nguyen TV; Fostier A; Bobe J; Guiguen Y. "Sex hormone-binding globulins characterization and
gonadal gene expression during sex differentiation in the rainbow trout, Oncorhynchus mykiss.". (2014): http://europepmc.org/abstract/med/24889418.
10.1002/mrd.22344
- Braasch I; Guiguen Y; Loker R; Letaw JH; Ferrara A; Bobe J; Postlethwait JH. "Connectivity of vertebrate genomes: Paired-related
homeobox (Prrx) genes in spotted gar, basal teleosts, and tetrapods.". (2014): http://europepmc.org/abstract/med/24486528.
10.1016/j.cbpc.2014.01.005
- Berthelot C; Brunet F; Chalopin D; Juanchich A; Bernard M; Noël B; Bento P; et al. "The rainbow trout genome provides novel
insights into evolution after whole-genome duplication in vertebrates.". (2014): http://europepmc.org/abstract/med/24755649.
10.1038/ncomms4657
- Juanchich A; Le Cam A; Montfort J; Guiguen Y; Bobe J. "Identification of differentially expressed miRNAs and their potential
targets during fish ovarian development.". (2013): http://europepmc.org/abstract/med/23595902.
10.1095/biolreprod.112.105361
- Desvignes T; Fostier A; Fauvel C; Bobe J. "The Nme gene family in fish.". (2013): http://europepmc.org/abstract/med/22484598.
10.1007/s10695-012-9639-8
- Marandel L; Labbe C; Bobe J; Jammes H; Lareyre JJ; Le Bail PY. "Do not put all teleosts in one net: focus on the sox2 and
pou2 genes.". (2013): http://europepmc.org/abstract/med/23142214.
10.1016/j.cbpb.2012.10.005
- Monget P; Bobe J; Gougeon A; Fabre S; Monniaux D; Dalbies-Tran R. "The ovarian reserve in mammals: a functional and evolutionary
perspective.". (2012): http://europepmc.org/abstract/med/21840373.
10.1016/j.mce.2011.07.046
- Le Cam A; Bobe J; Bouchez O; Cabau C; Kah O; Klopp C; Lareyre JJ; et al. "Characterization of rainbow trout gonad, brain and
gill deep cDNA repertoires using a Roche 454-Titanium sequencing approach.". (2012): http://europepmc.org/abstract/med/22465513.
10.1016/j.gene.2012.03.053
- Marandel L; Labbe C; Bobe J; Le Bail PY. "Evolutionary history of c-myc in teleosts and characterization of the duplicated
c-myca genes in goldfish embryos.". (2012): http://europepmc.org/abstract/med/22213278.
10.1002/mrd.22004
- Marandel L; Labbe C; Bobe J; Le Bail PY. "nanog 5'-upstream sequence, DNA methylation, and expression in gametes and early
embryo reveal striking differences between teleosts and mammals.". (2012): http://europepmc.org/abstract/med/22037485.
10.1016/j.gene.2011.10.037
- Charlier C; Montfort J; Chabrol O; Brisard D; Nguyen T; Le Cam A; Richard-Parpaillon L; et al. "Oocyte-somatic cells interactions,
lessons from evolution.". (2012): http://europepmc.org/abstract/med/23083410.
10.1186/1471-2164-13-560
- Gohin M; Bodinier P; Fostier A; Bobe J; Chesnel F. "Aromatase expression in Xenopus oocytes: a three cell-type model for the
ovarian estradiol synthesis.". (2011): http://europepmc.org/abstract/med/21768170.
10.1530/jme-11-0080
- Desvignes T; Fauvel C; Bobe J. "The NME gene family in zebrafish oogenesis and early development.". (2011): http://europepmc.org/abstract/med/21394481.
10.1007/s00210-011-0619-9
- Gohin M; Bodinier P; Fostier A; Chesnel F; Bobe J. "Aromatase is expressed and active in the rainbow trout oocyte during final
oocyte maturation.". (2011): http://europepmc.org/abstract/med/21656871.
10.1002/mrd.21335
- Rime H; Nguyen T; Bobe J; Fostier A; Monod G. "Prochloraz-induced oocyte maturation in rainbow trout (Oncorhynchus mykiss),
a molecular and functional analysis.". (2010): http://europepmc.org/abstract/med/20805220.
10.1093/toxsci/kfq255
- Bobe J; Guiguen Y; Fostier A. "Diversity and biological significance of sex hormone-binding globulin in fish, an evolutionary
perspective.". (2010): http://europepmc.org/abstract/med/19772892.
10.1016/j.mce.2009.09.017
- Doñate C; Balasch JC; Callol A; Bobe J; Tort L; MacKenzie S. "The effects of immunostimulation through dietary manipulation
in the rainbow trout; evaluation of mucosal immunity.". (2010): http://europepmc.org/abstract/med/19609615.
10.1007/s10126-009-9203-4
- Lubzens E; Young G; Bobe J; Cerdà J. "Oogenesis in teleosts: how eggs are formed.". (2010): http://europepmc.org/abstract/med/19505465.
10.1016/j.ygcen.2009.05.022
- Bobe J; Labbé C. "Egg and sperm quality in fish.". (2010): http://europepmc.org/abstract/med/19272390.
10.1016/j.ygcen.2009.02.011
- Gohin M; Bobe J; Chesnel F. "Comparative transcriptomic analysis of follicle-enclosed oocyte maturational and developmental
competence acquisition in two non-mammalian vertebrates.". (2010): http://europepmc.org/abstract/med/20059772.
10.1186/1471-2164-11-18
- Desvignes T; Pontarotti P; Bobe J. "Correction: Nme Gene Family Evolutionary History Reveals Pre-Metazoan Origins and High
Conservation between Humans and the Sea Anemone, Nematostella vectensis.". (2010): http://europepmc.org/abstract/PMC/PMC2993130.
- Desvignes T; Pontarotti P; Bobe J. "Nme gene family evolutionary history reveals pre-metazoan origins and high conservation
between humans and the sea anemone, Nematostella vectensis.". (2010): http://europepmc.org/abstract/med/21085602.
10.1371/journal.pone.0015506
- Crespo D; Bonnet E; Roher N; MacKenzie SA; Krasnov A; Goetz FW; Bobe J; Planas JV. "Cellular and molecular evidence for a
role of tumor necrosis factor alpha in the ovulatory mechanism of trout.". (2010): http://europepmc.org/abstract/med/20385004.
10.1186/1477-7827-8-34
- Bobe J; Nguyen T; Fostier A. "Ovarian function of the trout preovulatory ovary: new insights from recent gene expression studies.".
(2009): http://europepmc.org/abstract/med/19027867.
10.1016/j.cbpa.2008.10.021
- Mauger PE; Labbé C; Bobe J; Cauty C; Leguen I; Baffet G; Le Bail PY. "Characterization of goldfish fin cells in culture: some
evidence of an epithelial cell profile.". (2009): http://europepmc.org/abstract/med/19068235.
10.1016/j.cbpb.2008.11.003
- Desvignes T; Pontarotti P; Fauvel C; Bobe J. "Nme protein family evolutionary history, a vertebrate perspective.". (2009):
http://europepmc.org/abstract/med/19852809.
10.1186/1471-2148-9-256
- Bobe J; Mahé S; Nguyen T; Rime H; Vizziano D; Fostier A; Guiguen Y. "A novel, functional, and highly divergent sex hormone-binding
globulin that may participate in the local control of ovarian functions in salmonids.". (2008): http://europepmc.org/abstract/med/18339711.
10.1210/en.2007-1652
- Bobe J; Nguyen T; Mahé S; Monget P. "In silico identification and molecular characterization of genes predominantly expressed
in the fish oocyte.". (2008): http://europepmc.org/abstract/med/18947432.
10.1186/1471-2164-9-499
- Bonnet E; Fostier A; Bobe J. "Characterization of rainbow trout egg quality: a case study using four different breeding protocols,
with emphasis on the incidence of embryonic malformations.". (2007): http://europepmc.org/abstract/med/17118435.
10.1016/j.theriogenology.2006.10.008
- Bonnet E; Fostier A; Bobe J. "Microarray-based analysis of fish egg quality after natural or controlled ovulation.". (2007):
http://europepmc.org/abstract/med/17313677.
10.1186/1471-2164-8-55
- Kamangar BB; Gabillard JC; Bobe J. "Insulin-like growth factor-binding protein (IGFBP)-1, -2, -3, -4, -5, and -6 and IGFBP-related
protein 1 during rainbow trout postvitellogenesis and oocyte maturation: molecular characterization, expression profiles,
and hormonal regulation.". (2006): http://europepmc.org/abstract/med/16439447.
10.1210/en.2005-1570
- Milla S; Jalabert B; Rime H; Prunet P; Bobe J. "Hydration of rainbow trout oocyte during meiotic maturation and in vitro regulation
by 17,20{beta}-dihydroxy-4-pregnen-3-one and cortisol.". (2006): http://europepmc.org/abstract/med/16513941.
10.1242/jeb.02094
- Mourot B; Nguyen T; Fostier A; Bobe J. "Two unrelated putative membrane-bound progestin receptors, progesterone membrane receptor
component 1 (PGMRC1) and membrane progestin receptor (mPR) beta, are expressed in the rainbow trout oocyte and exhibit similar
ovarian expression patterns.". (2006): http://europepmc.org/abstract/med/16457725.
10.1186/1477-7827-4-6
- Bobe J; Montfort J; Nguyen T; Fostier A. "Identification of new participants in the rainbow trout (Oncorhynchus mykiss) oocyte
maturation and ovulation processes using cDNA microarrays.". (2006): http://europepmc.org/abstract/med/16872517.
10.1186/1477-7827-4-39
- Aegerter S; Jalabert B; Bobe J. "Large scale real-time PCR analysis of mRNA abundance in rainbow trout eggs in relationship
with egg quality and post-ovulatory ageing.". (2005): http://europepmc.org/abstract/med/16075464.
10.1002/mrd.20361
- Bobe J; Nguyen T; Jalabert B. "Targeted gene expression profiling in the rainbow trout (Oncorhynchus mykiss) ovary during
maturational competence acquisition and oocyte maturation.". (2004): http://europepmc.org/abstract/med/14985246.
10.1095/biolreprod.103.025205
- Rime H; Guitton N; Pineau C; Bonnet E; Bobe J; Jalabert B. "Post-ovulatory ageing and egg quality: a proteomic analysis of
rainbow trout coelomic fluid.". (2004): http://europepmc.org/abstract/med/15180895.
10.1186/1477-7827-2-26
- Aegerter S; Jalabert B; Bobe J. "Messenger RNA stockpile of cyclin B, insulin-like growth factor I, insulin-like growth factor
II, insulin-like growth factor receptor Ib, and p53 in the rainbow trout oocyte in relation with developmental competence.".
(2004): http://europepmc.org/abstract/med/14694427.
10.1002/mrd.10384
- Monod G; Rime H; Bobe J; Jalabert B. "Agonistic effect of imidazole and triazole fungicides on in vitro oocyte maturation
in rainbow trout (Oncorhynchus mykiss).". (2004): http://europepmc.org/abstract/med/15178025.
10.1016/j.marenvres.2004.03.008
- Bobe J; Maugars G; Nguyen T; Rime H; Jalabert B. "Rainbow trout follicular maturational competence acquisition is associated
with an increased expression of follicle stimulating hormone receptor and insulin-like growth factor 2 messenger RNAs.". (2003):
http://europepmc.org/abstract/med/12874798.
10.1002/mrd.10334
- Bonnet, E; Jalabert, B; Bobe, J. "A 3-day in vitro storage of rainbow trout (Oncorhynchus mykiss) unfertilised eggs in coelomic
fluid at 12 degrees C does not affect developmental success". Cybium 27 1 (2003): 47-51. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000182258600007&KeyUID=WOS:000182258600007.
- Bobe J; Goetz FW. "Cysteine protease inhibitor is specifically expressed in pre- and early-vitellogenic oocytes from the brook
trout periovulatory ovary.". (2001): http://europepmc.org/abstract/med/11599042.
10.1002/mrd.1093
- Bridgham JT; Bobe J; Goetz FW; Johnson AL. "Conservation of death receptor-6 in avian and piscine vertebrates.". (2001): http://europepmc.org/abstract/med/11414698.
10.1006/bbrc.2001.5093
- Bobe J; Goetz FW. "Molecular cloning and expression of a TNF receptor and two TNF ligands in the fish ovary.". (2001): http://europepmc.org/abstract/med/11399482.
10.1016/s1096-4959(01)00353-0
- Bobe J; Goetz FW. "An ovarian progastricsin is present in the trout coelomic fluid after ovulation.". (2001): http://europepmc.org/abstract/med/11259249.
10.1095/biolreprod64.4.1048
- Bobe J; Goetz FW. "A novel osteopontin-like protein is expressed in the trout ovary during ovulation.". (2001): http://europepmc.org/abstract/med/11165234.
10.1016/s0014-5793(01)02090-7
- Bobe J; Goetz FW. "A S100 homologue mRNA isolated by differential display PCR is down-regulated in the brook trout (Salvelinus
fontinalis) post-ovulatory ovary.". (2000): http://europepmc.org/abstract/med/11080585.
10.1016/s0378-1119(00)00406-6
- Bobe J; Andre S; Fauconneau B. "Embryonic muscle development in rainbow trout (Oncorhynchus mykiss): a scanning electron microscopy
and immunohistological study.". (2000): http://europepmc.org/abstract/med/10684561.
10.1002/(sici)1097-010x(20000301)286:4<379::aid-jez6>3.3.co;2-u
- Bobe J; Goetz FW. "A tumor necrosis factor decoy receptor homologue is up-regulated in the brook trout (Salvelinus fontinalis)
ovary at the completion of ovulation.". (2000): http://europepmc.org/abstract/med/10642582.
10.1095/biolreprod62.2.420
|
