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Filipe Castro. Completed the Doutoramento in PhD Biomedical Sciences (GABBA) in 2004/10/13 by Universidade do Porto Instituto de Ciências Biomédicas Abel Salazar and Graduated in Biologia in 1996/09/10 by Universidade do Porto Faculdade de Ciências. Is Assistant Professor in Universidade do Porto Faculdade de Ciências. Published 165 articles in journals. Has 2 section(s) of books and 2 book(s). Organized 1 event(s). Participated in 1 event(s). Supervised 5 PhD thesis(es) e co-supervised 6. Supervised 4 MSc dissertation(s) e co-supervised 3. Participates and/or participated as Other in 1 project(s), Principal investigator in 4 project(s) and Researcher in 7 project(s). Works in the area(s) of Natural sciences with emphasis on Biological Sciences with emphasis on Zoology, Evolutionary Biology, and Environmental Sciences. In their professional activities interacted with 584 collaborator(s) co-authorship of scientific papers. In his curriculum Ciência Vitae the most frequent terms in the context of scientific, technological and artistic-cultural output are: Genomics, Gene loss; Marine Sciences and Technologies; Part of the International Editorial Board of Comparative Biochemistry and Physiology (https://www.sciencedirect.com/journal/comparative-biochemistry-and-physiology-part-a-molecular-and-integrative-physiology/about/editorial-board); Council Member of the European Society of Comparative Endocrinology.
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Identification

Personal identification

Full name
Filipe Castro
Gender
Male

Citation names

  • C. Castro, L. Filipe

Author identifiers

Ciência ID
941D-C777-CC18
ORCID iD
0000-0001-7697-386X
Scopus Author Id
16644781000

Websites

Knowledge fields

  • Natural sciences - Biological Sciences - Zoology
  • Natural sciences - Biological Sciences - Evolutionary Biology
  • Natural sciences - Biological Sciences - Marine Biology
  • Natural sciences - Earth and Environmental Sciences - Environmental Sciences

Languages

Language Speaking Reading Writing Listening Peer-review
English Advanced (C1) Proficiency (C2) Advanced (C1) Proficiency (C2) Proficiency (C2)
French Intermediate (B1) Intermediate (B1) Beginner (A1) Intermediate (B1)
Education
Degree Classification
2004/10/13
Concluded
 PhD Biomedical Sciences (GABBA) (Doutoramento)
Universidade do Porto Instituto de Ciências Biomédicas Abel Salazar, Portugal
"Organisation and evolution of the ANTP class of homeobox genes: insights from amphioxus" (THESIS/DISSERTATION)
 Approved
1996/09/10
Concluded
 Biologia (Licenciatura)
Universidade do Porto Faculdade de Ciências, Portugal
"N/a" (THESIS/DISSERTATION)
 15
Affiliation

Science

Category
Host institution 		Employer
2005/12/01 - 2019/12/31 Auxiliary Researcher (Research) Universidade do Porto Centro Interdisciplinar de Investigação Marinha e Ambiental, Portugal
2004/11/01 - 2005/11/01 Postdoc (Research) Universidade do Porto Centro Interdisciplinar de Investigação Marinha e Ambiental, Portugal
1999/09/01 - 2000/08 Research Trainee (Research) Universidade do Porto Instituto de Ciências Biomédicas Abel Salazar, Portugal
Universidade do Porto Instituto de Ciências Biomédicas Abel Salazar, Portugal

Teaching in Higher Education

Category
Host institution 		Employer
2019/11/01 - Current Assistant Professor (University Teacher) Universidade do Porto Faculdade de Ciências, Portugal
Universidade do Porto Faculdade de Ciências, Portugal
2013/12/01 - 2019/09/30 Assistant Professor (University Teacher) Universidade do Porto Faculdade de Ciências, Portugal

Positions / Appointments

Category
Host institution 		Employer
2013/01/01 - 2018/12/31 Member of the Board of Directors Universidade do Porto Centro Interdisciplinar de Investigação Marinha e Ambiental, Portugal

Others

Category
Host institution 		Employer
2000/09/01 - 2004/10/13 PhD Student GABBA Universidade do Porto Instituto de Ciências Biomédicas Abel Salazar, Portugal
Universidade do Porto Instituto de Ciências Biomédicas Abel Salazar, Portugal
(...)
1997/04/01 - 1998/09/01 Assistant researcher Universidade do Porto Centro de Investigação em Biodiversidade e Recursos Genéticos, Portugal
Projects

Grant

Designation Funders
2008/10 - 2012/06 An integrative study on the toxicopathic lesions in Portuguese estuarine fishes - Assessing injury impact and toxicogenomic implications in experimental models.
Provided by PTCRIS: 70436
PTDC/MAR/70436/2006
Universidade de Trás-os-Montes e Alto Douro, Portugal
 Fundação para a Ciência e a Tecnologia
Concluded

Contract

Designation Funders
2023/09/01 - 2026/08/31 Whales and polar bear in a petri dish: decoding marine mammal toxicology through in vitro and in silico approaches – Marma-detox
334739
PI of the Portuguese Team
Universidade do Porto Centro Interdisciplinar de Investigação Marinha e Ambiental, Portugal
Ongoing
2022/01/01 - 2024/12/31 Sustainable antifouling agents: from grape wastes to the sea with the green chemistry leading the way.
PTDC/CTA-AMB/0853/2021
Universidade do Porto Faculdade de Farmácia, Portugal

Cooperativa de Ensino Superior Politécnico e Universitário CRL, Portugal
Fundação para a Ciência e a Tecnologia
Ongoing
2021/04/01 - 2024/03/31 Mineração do mar profundo e alterações climáticas: novas ferramentas de modelação no suporte à gestão de risco ambiental
PTDC/CTA-AMB/7948/2020
Universidade do Porto Centro Interdisciplinar de Investigação Marinha e Ambiental, Portugal

Universidade do Porto Faculdade de Ciências, Portugal

Instituto Português do Mar e da Atmosfera, Portugal
Fundação para a Ciência e a Tecnologia
Ongoing
2021/03/01 - 2024/02/29 Bivalves no limite: genómica da adaptação em cenários de alteraçoes climáticas
PTDC/CTA-AMB/3065/2020
Universidade do Porto Centro Interdisciplinar de Investigação Marinha e Ambiental, Portugal

Universidade de Trás-os-Montes e Alto Douro, Portugal

Universidade do Minho, Portugal

Université de Montréal, Canada

Universidade do Porto Instituto de Ciências Tecnologias e Agroambiente, Portugal

Rede de Investigação em Biodiversidade e Biologia Evolutiva, Portugal

Instituto Politécnico de Bragança, Portugal

Universidade do Minho Centro de Biologia Molecular e Ambiental, Portugal

Universidade de Trás-os-Montes e Alto Douro Centro de Investigação e de Tecnologias Agro-Ambientais e Biologicas, Portugal
Fundação para a Ciência e a Tecnologia
Ongoing
2019/11/01 - 2022/10/31 Trans-phyletic obesogenic responses: from epigenetic modules to transgenerational environmental impacts
PTDC/CTA-AMB/31544/2017
Researcher
Universidade do Porto Centro Interdisciplinar de Investigação Marinha e Ambiental, Portugal
 Fundação para a Ciência e a Tecnologia
Ongoing
2022/03/16 - 2022/09/15 Anti-incrustantes sustentáveis: dos desperdícios da uva para o Mar, com a Química Verde a liderar o caminho.
PTDC/CTA-AMB/0853/2021
Universidade do Porto Centro Interdisciplinar de Investigação Marinha e Ambiental, Portugal

Universidade do Porto Faculdade de Farmácia, Portugal
Fundação para a Ciência e a Tecnologia
Ongoing
2022/03/16 - 2022/09/15 NIAF- Sustainable antifouling agents: from grape wastes to the sea with the green chemistry leading the way
PTDC/CTA-AMB/0853/2021
Universidade do Porto Centro Interdisciplinar de Investigação Marinha e Ambiental, Portugal

Universidade do Porto Faculdade de Farmácia, Portugal
Fundação para a Ciência e a Tecnologia
Ongoing
2018/10/15 - 2021/10/14 Applying elasmobranch immunogenetics to fisheries management and the study of vertebrate adaptive immunity
PTDC/ASP-PES/28053/2017
Researcher
Universidade do Porto Centro de Investigação em Biodiversidade e Recursos Genéticos, Portugal

Universidade do Porto Centro Interdisciplinar de Investigação Marinha e Ambiental, Portugal
Fundação para a Ciência e a Tecnologia
Ongoing
2018/08/01 - 2021/07/31 Unraveling neuro-endocrine/immune modulatory roles of tryptophan during inflammation
PTDC/CVT-CVT/32349/2017
Researcher
2018/07/26 - 2021/07/25 Biosensor and biomimetic recognition element based devices for detection and separation of cyanobacteria metabolites with ecotoxicological and therapeutical applications
PTDC/BTA-GES/32359/2017
Researcher
2018/07/02 - 2021/07/01 Understanding Darwinian cancer evolution at the single-cell level
PTDC/BIA-EVL/32030/2017
Researcher
Universidade do Porto Centro Interdisciplinar de Investigação Marinha e Ambiental, Portugal
 Fundação para a Ciência e a Tecnologia
2018/07 - 2021/07 EvoDis - The Metazoan Endocrine System in the Anthropocene Epoch: from EVOlution to DISruption,
PTDC/CTA-AMB/31342/2017
Principal investigator
Fundação para a Ciência e a Tecnologia
2018/06/18 - 2021/05/31 The Sea and the Shore, Architecture and Marine Biology: The Impact of Sea Life on the Built Environment
PTDC/ART-DAQ/29537/2017
Researcher
Universidade do Porto Centro Interdisciplinar de Investigação Marinha e Ambiental, Portugal
 Fundação para a Ciência e a Tecnologia
Ongoing
2018/06/01 - 2021/05/31 Impacts of global change on environmentally realistic mixtures of endocrine disruptor compounds on the structure and functioning of coastal ecosystems ? Implications for a sustainable environment
PTDC/BIA-ECO/30552/2017
Researcher
2016/01 - 2018/12 CORAL - Sustainable ocean exploitation: tools and sensors
NORTE-01-0145-FEDER-000036
Principal investigator
2011/04/01 - 2014/09/30 Estudo da modelação das vias de sinalização dos retinóides e das hormonas da tiróide, por disruptores endócrinos, em invertebrados
PTDC/MAR/115199/2009
Universidade do Porto Centro Interdisciplinar de Investigação Marinha e Ambiental, Portugal
 Fundação para a Ciência e a Tecnologia
Concluded
2011/04/01 - 2014/09/30 Peroxissomas, estrogénios e receptores nucleares: avaliação de "cross-talk" nos hepatócitos da truta como modelo animal - impactos no metabolismo lipídico.
PTDC/CVT/115618/2009
Universidade do Porto Centro Interdisciplinar de Investigação Marinha e Ambiental, Portugal
 Fundação para a Ciência e a Tecnologia
Concluded
2010/04/01 - 2013/09/30 The invertebrate repertoire of nuclear receptors: evolutionary and endocrine disruption insights
info:eu-repo/grantAgreement/FCT/5876-PPCDTI/105199/PT
Principal investigator
Universidade do Porto Centro Interdisciplinar de Investigação Marinha e Ambiental, Portugal
 Fundação para a Ciência e a Tecnologia
2010/04/01 - 2013/09/30 O repertório de receptores nucleares em invertebrados: investigações evolutivas e de disrupção endócrina
PTDC/MAR/105199/2008
Universidade do Porto Centro Interdisciplinar de Investigação Marinha e Ambiental, Portugal
 Fundação para a Ciência e a Tecnologia
Concluded
2011/01/01 - 2012/12/31 Strategic Project - LA 15 - 2011-2012
PEst-C/MAR/LA0015/2011
Centro de Ciências do Mar, Portugal

Universidade do Porto Centro Interdisciplinar de Investigação Marinha e Ambiental, Portugal
Fundação para a Ciência e a Tecnologia
Concluded
2008/09/01 - 2012/05/31 The modulation of retinoic acid signalling pathways by environmental pollutants in teleosts
PTDC/MAR/68106/2006
Universidade do Porto Instituto de Ciências Tecnologias e Agroambiente, Portugal
 Fundação para a Ciência e a Tecnologia
Concluded
2008/08/01 - 2012/01/31 Disrupção do metabolismo lipídico em peixes marinhos por xenobióticos ligandos de receptores activados por proliferadores peroxissomais PPARs
PTDC/MAR/68885/2006
Universidade do Porto Centro Interdisciplinar de Investigação Marinha e Ambiental, Portugal
 Fundação para a Ciência e a Tecnologia
Concluded
2005/10/01 - 2008/09/30 The molecular mechanisms of sexual differentiation in gastropods and the role of vertebrate-like steroid hormones
PPCDT/MAR/59462/2004
POCI/MAR/59462/2004
Principal investigator
Universidade do Porto Centro Interdisciplinar de Investigação Marinha e Ambiental, Portugal
 Fundação para a Ciência e a Tecnologia
2005/10/01 - 2007/06/30 Efeito de misturas complexas de disruptores endócrinos com actividade antagónica em duas espécies de peixes com diferentes ciclos de vida
POCI/MAR/60895/2004
Instituto Universitário de Ciências Psicológicas Sociais e da Vida, Portugal

Universidade do Porto Faculdade de Ciências, Portugal
Fundação para a Ciência e a Tecnologia
Concluded

Other

Designation Funders
2011/09/01 - 2012/10/30 Peroxisomes, estrogens, and nuclear receptors: cross-talk evaluation in hepatocytes of the trout as a fish model organism - impacts on lipid metabolism
PTDC/CVT/115618/2009
Universidade do Porto Centro Interdisciplinar de Investigação Marinha e Ambiental, Portugal
 Fundação para a Ciência e a Tecnologia
Concluded
Outputs

Publications

Book
  1. Santos, M.M.; Reis-Henriques, M.A.; Castro, L.F.C.. Lipid homeostasis perturbation by organotins: Effects on vertebrates and invertebrates. 2012.
    10.2174/978160805265311201010083
  2. Wilson, J.M.; Castro, L.F.C.. Morphological diversity of the gastrointestinal tract in fishes. 2010.
    10.1016/S1546-5098(10)03001-3
Book chapter
  1. Elza Fonseca; Raquel Ruivo; Miguel M. Santos; L. Filipe C. Castro. "Endocrine-disrupting chemicals and their mode of action: The case of nuclear receptors and the evolution of the Metazoa". 2023.
    10.1016/B978-0-12-824464-7.00016-7
  2. Fonseca, Elza; Ruivo, Raquel; Miguel M. Santos; C. Castro, L. Filipe. Corresponding author: C. Castro, L. Filipe. "1.4. Endocrine Disruption Chemicals and their Mode of Action: the case of Nuclear Receptors and the evolution of the Metazoa". In Environmental Contaminants and Endocrine Health, edited by Oliana Carnevali; Gary Hardiman. Academic Press, 2023.
    In press
  3. Monroig, O.; Tocher, D.R.; Castro, L.F.C.. "Polyunsaturated Fatty acid biosynthesis and metabolism in fish". 31-60. 2018.
    10.1016/b978-0-12-811230-4.00003-x
  4. Neuparth, T.; Castro, L.F.C.; Santos, M.M.. "Biological effects of organotins in the marine environment". 103-120. 2017.
Conference abstract
  1. Pinto, Rui; Miguel M. Fonseca; Josefin Stiller; Valente, Raul; Ruivo, Raquel; Rute da Fonseca; C. Castro, L. Filipe. "From PseudoChecker2.0 to PseudoViz: a story of gene loss". Paper presented in SMBE23, Ferrara, 2023.
    Published
  2. Fonseca, E; Silva, Beatriz; Gomes-dos-Santos, André; Machado, André; Pinto, Rui; C. Castro, L. Filipe; Froufe, Elsa. "Genomic Adaptations Associated with Climate Change and Biological Changes in the unionid mussel Unio delphinus (Spengler, 1793)". Paper presented in SMBE23, Ferrara, 2023.
    In press
  3. Pinheiro, João; Gomes-dos-Santos, André; C. Castro, L. Filipe; Froufe, Elsa; Fonseca, Elza. "Nuclear receptors and the mussels that "don't get better with butter"". Paper presented in IJUP 2023, Porto, 2023.
    In press
  4. Lago, Íris; Fonseca, Elza; Gasnier, Bruno; C. Castro, L. Filipe; Ruivo, Raquel. "MiT/TFE Family of Transcription Factors in Invertebrates: from nutrient sensing to environmental markers?". Paper presented in IJUP 2023, Porto, 2023.
    In press
  5. Pinto, Bernardo; Malakpourkolbadinezhad, Salman; Cordeiro, Miguel; Machado, André; Ruivo, Raquel; Fonseca, Elza; Andrade, José Pedro; et al. "Sans Glomeruli: the recurrent origin of aglomerular kidneys in teleosts". Paper presented in IJUP 2023, 2023.
    In press
  6. Beatriz Silva; Alves, Filipe; Ana Dinis; Rita Ferreira; Correia, Ana M.; Valente, Raul; Ágatha Gil; et al. "Blow microbiota of free-ranging short-finned pilot whales: Comparison of 16S rRNA primers for studies of blow prokaryotic communities". Paper presented in 34th Annual Conference of the European Cetacean Society, O'Grove, 2023.
    Accepted
  7. Valente, Raul; Kang H; Sun S; da Fonseca RR; Correia, Ana M.; Ágatha Gil; Sousa-Pinto, I; et al. "The last piece of the puzzle: a population genomics study in Globicephala macrorhynchus". Paper presented in 34th Annual Conference of the European Cetacean Society, O'Grove, 2023.
    Accepted
  8. Bernardo Pinto; Valente, Raul; Salvador-Caramelo, Filipe; Raquel Ruivo; C. Castro, L. Filipe. "Convergent Gene Decay of Skin specific Gene Modules in the Pangolin Ancestor". Paper presented in Young Sistematists¿ Forum 2022, 2022.
  9. Diogo Oliveira; Valente, Raul; Daniela Soares; Susana Barbosa; Miguel Santos; C. Castro, L. Filipe; Raquel Ruivo. "Massive gene loss and the making of xenobiotic-induced responses in cetacea". Paper presented in Blue Think Conference 2022, 2022.
  10. Valente, Raul; Bernardo Pinto; Salvador-Caramelo, Filipe; Andre M. Machado; Alves, Filipe; Sousa-Pinto, Isabel; Miguel Cordeiro; Raquel Ruivo; C. Castro, L. Filipe. "Modelling Mammalian behavioural traits: Inactivation of several Neuropeptides and Receptors in Cetacea and other mammals". Paper presented in Blue Think Conference 2022, 2022.
  11. Sousa, Diogo; Fonseca, Elza; Sousa, João; Ruivo, Raquel; Santos, Miguel; C. Castro, L. Filipe. "Evolution of endocrine systems in Lophotrochozoans". Paper presented in IJUP 2022, Porto, 2022.
    Published
  12. Bernardo Pinto; Valente, Raul; Raquel Ruivo; C. Castro, L. Filipe. "Gene erosion of Sebum-producing genes in Pangolins". Paper presented in Young Investigation Conference of University of Porto (IJUP), 2022.
  13. Lopes, G; Castro, LFC; Sousa, V; Valente, LMP. "LONG TERM FEEDING OF VEGETABLE OIL BASED DIETS AFFECTS MUSCLE CELLULARITY AND THE EXPRESSION OF GROWTH-RELATED GENES". 2017.
  14. Santo, Miguel; Lyssimachou, Angeliki; Lopes-Marques, Mónica; CAPITÃO, ANA; Fonseca, Elza; Ruivo, Raquel; C. Castro, L. Filipe. "Obesogens: molecular signaling pathways in fish". Paper presented in XV European Congress of Ichthyology, Porto, 2015.
    Published
  15. Goncalves, OM; Fontainhas Fernandes, A; Castro, LC; Smolka, A; Wilson, J. "Gastric proton pump expression in teleost fishes: Nongastric sites of expression in gastric versus agastric fishes". 2008.
    10.1016/j.cbpa.2008.04.225
Conference poster
  1. Beatriz Santos Silva; Alves, Filipe; Ana Dinis; Rita Borges Ferreira; Ana Mafalda correia; Raúl Valente; Ágatha Gil; et al. "Blow microbiota of free-ranging short-finned pilot whales: comparison of two 16S rRNA primers for studies of blow prokaryotic communities". Paper presented in 34th Conference of the European Cetacean Society, 2023.
  2. SILVA, NÁDIA; C. Castro, L. Filipe; Raquel Ruivo; Valente, Raul. "The hunger hormone in Cetacea: a remarkable story of duplication and loss". Paper presented in Blue Think Conference, 2023.
  3. Beatriz Santos Silva; Alves, Filipe; Ana Dinis; Rita Ferreira; Correia, Mafalda; Raúl Valente; Ágatha Gil; et al. "Investigation of respiratory prokaryotic communities of free-ranging short-finned pilot whales using non-invasive sampling". Paper presented in Blue Think Conference 22', 2022.
  4. Raúl Valente; ALVES, LUÍS; Miguel Nabais; Alves, Filipe; Isabel Sousa-Pinto; Ruivo, Raquel; C. Castro, L. Filipe. "Setting the rhythm: how gene loss events shaped marine mammal circadian rhythmicity". Paper presented in 24th Biennial Conference on the Biology of Marine Mammals, 2022.
  5. Maria Tomasino; Beatriz Santos Silva; Alves, Filipe; Ana Dinis; Rita Ferreira; Correia, Mafalda; Raúl Valente; et al. "Dive into the blow microbiome of free-ranging short-finned pilot whales: protocol optimization and preliminary results". Paper presented in 24th Biennial Conference on the Biology of Marine Mammals, 2022.
  6. Sousa, João; Degli-Esposti, Davide; Geffard, Olivier; Chaumot, Arnaud; C. Castro, L. Filipe; Miguel M. Santos; Neuparth, Teresa; Ruivo, Raquel 1614-5EAA-2361. "Risk assessment in the Anthropochemical era: A receptor-based tool for the identification of Endocrine Disrupting Chemicals". Paper presented in 32nd European Society for Comparative Biochemistry and Physiology (ESCPB), 2022.
  7. Biltes,R; Páscoa, Inês; Sousa, João; Vasconcelos, Vitor; C. Castro, L. Filipe; Preto, Marco; Ruivo, R. A.; Cunha, Isabel. "Can Cyanobacteria help on lipid metabolism and inflammatory disorders?". Paper presented in 12th European Conference on Marine Natural Products Galway, Ireland, 2021.
  8. Biltes, Rita; Páscoa, Inês; Sousa, João; Vasconcelos, Vitor; C. Castro, L. Filipe; Preto, Marco; Ruivo, Raquel; Cunha, I. "CAN CYANOBACTERIA HELP OUT LIPID METABOLISM AND INFLAMMATORY DISORDERS?". Paper presented in XII European Conference on Marine Natural Products, 2021.
  9. Sousa, João; Neuparth, Teresa; Chaumot, Arnaud; C. Castro, L. Filipe; Geffard, Olivier; Santos, Miguel; Degli-Esposti, Davide; Ruivo, Raquel 1614-5EAA-2361. "Endocrine disrupting chemicals in gammarids: the Ecdysone Receptor as molecular sentinel". Paper presented in Blue Think Conference, CIIMAR, Matosinhos, Portugal, 2021.
  10. Sousa, João; Neuparth, Teresa; C. Castro, L. Filipe; Santos, Miguel; Ruivo, Raquel 1614-5EAA-2361. "The Amphipod Ecdysone Receptor: In vitro identification of endocrine disrupting chemicals". Paper presented in IJUP- Encontro de Investigação Jovem, 2021.
  11. Biltes, Rita; Páscoa, Inês; Sousa, João; Lopes-Marques, Mónica; Preto, Marco; Vasconcelos, Vitor; C. Castro, L. Filipe; Ruivo, Raquel 1614-5EAA-2361; Cunha, Isabel. "A molecular cell-based sensor to detect PPAR ligands - an optimized tool for drug discovery in cyanobacteria". Paper presented in Blue Think Conference, CIIMAR, Matosinhos, Portugal, 2020.
  12. Biltes, Rita; Páscoa, Inês; Sousa, João; Vasconcelos, Vitor; C. Castro, L. Filipe; Preto, Marco; Lopes-Marques, Mónica; Ruivo, Raquel 1614-5EAA-2361; Cunha, Isabel. "A molecular cell-based sensor to detect PPARs ligands: drug discovery in cyanobacteria". Paper presented in IJUP Conference 13rd Edition, Reitoria da Universidade do Porto, Porto, Portugal, 2020.
  13. Alves, Filipe; Dromby, Morgane; Baptista, Vânia; Ferreira, Rita; Correia, Mafalda; Wyen, Mieke; Valente, Raul; et al. "Using RNA/DNA ratios and Carbon/Nitrogen stable isotopes to assess the nutritional condition and trophic ecology of two cetacean species in an oceanic habitat.". Paper presented in World Marine Mammal Science Conference, 2019.
  14. Páscoa, Inês; Biltes, Rita; Sousa, João; Vasconcelos, Vitor; C. Castro, L. Filipe; Preto, Marco; Lopes-Marques, Mónica; Ruivo, Raquel 1614-5EAA-2361; Cunha, Isabel. "A multiplex vector-based cell sensor for PPARs related drug discovery". Paper presented in Genomics for a Blue Economy Conference, Stazione Zoologica Anton Dohrn, Napoles, Italy, 2019.
  15. Fonseca, Elza; Ruivo, Raquel; Corado, Francisca; Machado, André; Santos, Miguel; C. Castro, L. Filipe. "Preservation and loss of the Pregnane X Receptor in chondrichthyans sheds light into the early evolution of detoxification mechanisms in gnathostomes.". Paper presented in 31st ESCPB congress - European Society of Comparative Physiology and Biochemistry, 2018.
  16. Corado, Francisca; Ruivo, Raquel; Machado, André; Fonseca, Elza; Santos, Miguel; C. Castro, L. Filipe. "PPARg evolution in teleosts: gene duplication, retention, and loss.". Paper presented in 31st ESCPB congress - European Society of Comparative Physiology and Biochemistry, 2018.
  17. Fonseca, Elza; Ruivo, Raquel; Lopes-Marques, Mónica; Fonseca, Miguel; Machado, André; Santos, Miguel; C. Castro, L. Filipe. "The "Neglected": the "insightful" repertoire of nuclear receptors in Protostomes". Paper presented in 7th meeting of the European Society for Evolutionary Developmental Biology (EED), 2018.
  18. Lopes-Marques, Mónica; CAPITÃO, ANA; Ruivo, Raquel; Fonseca, Elza; Santos, Miguel; C. Castro, L. Filipe. "Structural and Molecular Underpinnings of Variable Obesogen Sensitivity in Vertebrates". Paper presented in 18º Portugaliae Genetica, 2018.
  19. Brito, Francisca; Sthelio, F.; Peixoto, MJ; Domingues, A.; Damasceno-Oliveira, A.; Gonçalves, José; C. Castro, L. Filipe; Cunha, I.; Ozório, R.O.A.. "Metabolic regulation in meagre, Argyrosomus regius (Asso, 1801): Study of gene-diet interactions on lipid metabolism". Paper presented in IMMR | International Meeting on Marine Research 2014, 2014.
    10.3389/conf.fmars.2014.02.00014
  20. Cunha, Isabel; Galante-Oliveira, Susana; Rocha, Eduardo; C. Castro, L. Filipe; Galante-Oliveira S,; Resende D,; Castro LFC.; et al. "Effects of treatment with the standard PPAR¿ ligand WY14,643 on juvenile turbot Scophthalmus maximus. II. Gene expression". Paper presented in Society of Environmental Toxicology and Chemistry (SETAC) Meeting, 2010.
Journal article
  1. da Fonseca, Rute R.; Campos, Paula F.; Rey-Iglesia, Alba; Barroso, Gustavo V.; Bergeron, Lucie A.; Nande, Manuel; Tuya, Fernando; et al. "Population Genomics Reveals the Underlying Structure of the Small Pelagic European Sardine and Suggests Low Connectivity within Macaronesia". Genes 15 2 (2024): 170. http://dx.doi.org/10.3390/genes15020170.
    10.3390/genes15020170
  2. Ana Veríssimo; L Filipe C Castro; Antonio Muñoz-Mérida; Tereza Almeida; Arnaud Gaigher; Fabiana Neves; Martin F Flajnik; Yuko Ohta; Meredith Yeager. "An Ancestral Major Histocompatibility Complex Organization in Cartilaginous Fish: Reconstructing MHC Origin and Evolution". Molecular Biology and Evolution (2023): https://doi.org/10.1093/molbev/msad262.
    10.1093/molbev/msad262
  3. André Gomes-dos-Santos; Nair Vilas-Arrondo; André M. Machado; Esther Román-Marcote; Jose Luís Del Río Iglesias; Francisco Baldó; Montse Pérez; et al. "Mitochondrial replication's role in vertebrate mtDNA strand asymmetry". Open Biology (2023): https://doi.org/10.1098/rsob.230181.
    10.1098/rsob.230181
  4. Ana Matos; André Gomes-dos-Santos; Sofia Graça Aranha; Ester Dias; Ana Veríssimo; Alexandra Teodósio; Ivone Figueiredo; L. Filipe C. Castro; Elsa Froufe. "Dataset of the complete mitogenome of the deep-sea sailfin roughshark, Oxynotus paradoxus Frade, 1929". Data in Brief (2023): https://doi.org/10.1016/j.dib.2023.109836.
    10.1016/j.dib.2023.109836
  5. Bernardo Pinto; Machado AM; J.Miguel Cordeiro; Kolbadinezhad SM; Elza Fonseca; Andrade JP; Palma J; et al. "Extensive gene loss parallels kidney aglomerulism in Syngnathidae.". Current biology : CB (2023): https://doi.org/10.1016/j.cub.2023.08.045.
    10.1016/j.cub.2023.08.045
  6. Alberto Ribes-Navarro; Naoki Kabeya; L. Filipe C. Castro; André Gomes-dos-Santos; Miguel M. Fonseca; Hilke Alberts-Hubatsch; Francisco Hontoria; Juan C. Navarro; Óscar Monroig. "Examination of gammarid transcriptomes reveals a widespread occurrence of key metabolic genes from epibiont bdelloid rotifers in freshwater species". Open Biology (2023): https://doi.org/10.1098/rsob.230196.
    10.1098/rsob.230196
  7. Bernardo Pinto; Raul Valente; Filipe Caramelo; Raquel Ruivo; L. Filipe C. Castro. "Decay of Skin-Specific Gene Modules in Pangolins". Journal of Molecular Evolution (2023): https://doi.org/10.1007/s00239-023-10118-z.
    10.1007/s00239-023-10118-z
  8. André Gomes-dos-Santos; Elsa Froufe; John M. Pfeiffer; Nathan A. Johnson; Chase H. Smith; André M. Machado; L. Filipe C. Castro; et al. "A novel assembly pipeline and functional annotations for targeted sequencing: A case study on the globally threatened Margaritiferidae (Bivalvia: Unionida)". Molecular Ecology Resources (2023): https://doi.org/10.1111/1755-0998.13802.
    10.1111/1755-0998.13802
  9. André Gomes-dos-Santos; Manuel Lopes-Lima; André M. Machado; Thomas Forest; Guillaume Achaz; Amílcar Teixeira; Vincent Prié; L. Filipe C. Castro; Elsa Froufe. "The Crown Pearl V2: an improved genome assembly of the European freshwater pearl mussel Margaritifera margaritifera (Linnaeus, 1758)". Gigabyte (2023): https://doi.org/10.46471/gigabyte.81.
    10.46471/gigabyte.81
  10. Inês Páscoa; Rita Biltes; João Sousa; Marco Aurélio Correia Preto; Vitor Vasconcelos; Luís Filipe Castro; Raquel Ruivo; Isabel Cunha. "A Multiplex Molecular Cell-Based Sensor to Detect Ligands of PPARs: An Optimized Tool for Drug Discovery in Cyanobacteria". Sensors (2023): https://doi.org/10.3390/s23031338.
    10.3390/s23031338
  11. Malzahn, AM; Villena Rodriguez, A; Monroig, O; Johansen, A; Castro, LFC; Navarro, JC; Hagemann, A. "Diet rather than temperature determines the biochemical composition of the ragworm Hediste diversicolor (OF Muller, 1776) (Annelida: Nereidae)". AQUACULTURE (2023):
    10.1016/j.aquaculture.2023.739368
  12. Sun, B; Huang, YW; Castro, LFC; Yang, S; Huang, SQ; Jin, W; Zhou, H; et al. "The chromosome-level genome and key genes associated with mud-dwelling behavior and adaptations of hypoxia and noxious environments in loach (Misgurnus anguillicaudatus)". BMC BIOLOGY (2023):
    10.1186/s12915-023-01517-1
  13. Mucientes, G; Vilas Arrondo, N; Secci Petretto, G; Vázquez, U; Pin, X; López, A; Castro, LFC; Froufe, E. "First Confirmed Record of the Smalltooth Sand Tiger, Odontapis Ferox, in Galicia (NW Spain)". THALASSAS (2023):
    10.1007/s41208-023-00526-9
  14. Gomes-dos-Santos, A; Froufe, E; Machado, AM; Lajtner, J; Cernecky, J; Castro, LFC; Lima, ML. "A PacBio Hi-Fi Genome Assembly of the Painter's Mussel Unio pictorum (Linnaeus, 1758)". GENOME BIOLOGY AND EVOLUTION (2023):
    10.1093/gbe/evad116
  15. Froufe, E; Gomes dos Santos, A; Matos, A; Wilson, J; Malakpourkolbadinezhad, S; Pereira, DD; Singer, R; Castro, LFC. "How complex is the hidden species diversity of the teleost Plotosus genus?". ICHTHYOLOGICAL RESEARCH (2023):
    10.1007/s10228-023-00924-2
  16. Dias, E; Dromby, M; Ferreira, R; Gil, A; Tejerina, R; Castro, LFC; Rosso, M; et al. "Trophic ecology of common bottlenose dolphins in a pelagic insular environment inferred by stable isotopes". HYDROBIOLOGIA (2023):
    10.1007/s10750-023-05294-4
  17. "Desaturases and elongases involved in long-chain polyunsaturated fatty acid biosynthesis in aquatic animals: From genes to functions". Progress in Lipid Research 86 (2022): 101157-101157. http://dx.doi.org/10.1016/j.plipres.2022.101157.
    10.1016/j.plipres.2022.101157
  18. "The era of reference genomes in conservation genomics". Trends in Ecology & Evolution 37 3 (2022): 197-202. http://dx.doi.org/10.1016/j.tree.2021.11.008.
    10.1016/j.tree.2021.11.008
  19. "Neuroendocrine pathways at risk? Simvastatin induces inter and transgenerational disruption in the keystone amphipod Gammarus locusta". Aquatic Toxicology 244 (2022): 106095-106095. http://dx.doi.org/10.1016/j.aquatox.2022.106095.
    10.1016/j.aquatox.2022.106095
  20. Machado, André M.; Gomes-dos-Santos, André; Fonseca, Miguel M.; da Fonseca, Rute R.; Veríssimo, Ana; Felício, Mónica; Capela, Ricardo; et al. "A genome assembly of the Atlantic chub mackerel (Scomber colias): a valuable teleost fishing resource". Gigabyte 2022 (2022): 1-21. http://dx.doi.org/10.46471/gigabyte.40.
    10.46471/gigabyte.40
  21. P. Ferreira; G. T. Kwan; S. Haldorson; J. L. Rummer; F. Tashiro; L. F. C. Castro; M. Tresguerres; J. M. Wilson. "A multi-tasking stomach: functional coexistence of acid–peptic digestion and defensive body inflation in three distantly related vertebrate lineages". Biology Letters (2022): https://doi.org/10.1098/rsbl.2021.0583.
    10.1098/rsbl.2021.0583
  22. "Biofortified Diets Containing Algae and Selenised Yeast: Effects on Growth Performance, Nutrient Utilization, and Tissue Composition of Gilthead Seabream (Sparus aurata)". Frontiers in Physiology 12 (2022): http://dx.doi.org/10.3389/fphys.2021.812884.
    10.3389/fphys.2021.812884
  23. Inês Páscoa; Elza Fonseca; Renato Ferraz; André M. Machado; Francisca Conrado; Raquel Ruivo; Isabel Cunha; Luís Filipe C. Castro. "The Preservation of PPAR¿ Genome Duplicates in Some Teleost Lineages: Insights into Lipid Metabolism and Xenobiotic Exploitation". Genes (2022): https://doi.org/10.3390/genes13010107.
    10.3390/genes13010107
  24. Machado, A.M.; Fernández-Boo, S.; Nande, M.; Pinto, R.; Costas, B.; Castro, L.F.C.. "The male and female gonad transcriptome of the edible sea urchin, Paracentrotus lividus: Identification of sex-related and lipid biosynthesis genes". Aquaculture Reports 22 (2022): http://www.scopus.com/inward/record.url?eid=2-s2.0-85119052510&partnerID=MN8TOARS.
    10.1016/j.aqrep.2021.100936
  25. Esfandiyari, K; Pfeifer, LJ; Farahani, MA; Kolbadinezhad, SM; Castro, LF; Wilson, JM. "The gastric proton pump in gobiid and mudskipper fishes. Evidence of stomach loss?". COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY A-MOLECULAR & INTEGRATIVE PHYSIOLOGY (2022):
    10.1016/j.cbpa.2022.111300
  26. Gomes dos Santos, A; Machado, AM; Castro, LFC; Prie, V; Teixeira, A; Lopes Lima, M; Froufe, E. "The gill transcriptome of threatened European freshwater mussels". SCIENTIFIC DATA (2022):
    10.1038/s41597-022-01613-x
  27. Ferraz, RB; Paixao, RV; Lopes-Marques, M; Machado, AM; Salaro, AL; Castro, LFC; Monroig, O; O'Sullivan, FLA. "The repertoire of the elongation of very long-chain fatty acids (Elovl) protein family is conserved in tambaqui (Colossoma macropomum): Gene expression profiles offer insights into the sexual differentiation process". COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY B-BIOCHEMISTRY & MOLECULAR BIOLOGY (2022):
    10.1016/j.cbpb.2022.110749
  28. Zhao, Y; Castro, LFC; Monroig, O; Cao, XJ; Sun, YH; Gao, J. "A zebrafish ppar gamma gene deletion reveals a protein kinase network associated with defective lipid metabolism". FUNCTIONAL & INTEGRATIVE GENOMICS (2022):
    10.1007/s10142-022-00839-7
  29. Nande, M; Monroig, O; Machado, AM; Castro, LFC; Lopes-Marques, M; Capitao, A; Navarro, JC. "Dietary lipids as modulators of fatty acid profile and gene expression patterns on body compartments of Octopus vulgaris paralarvae". AQUACULTURE (2022):
    10.1016/j.aquaculture.2022.738293
  30. Vilas Arrondo, N; Gomes dos Santos, A; Perez, M; Baldo, F; Verissimo, A; Catarino, D; Machado, AM; et al. "A mitochondrial genome assembly of the opal chimaera, Chimaera opalescens Luchetti, Iglesias et Sellos 2011, using PacBio HiFi long reads". MITOCHONDRIAL DNA PART B-RESOURCES (2022):
    10.1080/23802359.2022.2044403
  31. Raquel Ruivo; João Sousa; Teresa Neuparth; Olivier Geffard; Arnaud Chaumot; L. Filipe C. Castro; Davide Degli-Esposti; Miguel M. Santos. "From Extrapolation to Precision Chemical Hazard Assessment: The Ecdysone Receptor Case Study". Toxics (2021): https://doi.org/10.3390/toxics10010006.
    10.3390/toxics10010006
  32. Raul Valente; Filipe Alves; Isabel Sousa-Pinto; Raquel Ruivo; L. Filipe C. Castro. "Functional or Vestigial? The Genomics of the Pineal Gland in Xenarthra". Journal of Molecular Evolution (2021): https://doi.org/10.1007/s00239-021-10025-1.
    10.1007/s00239-021-10025-1
  33. Shouxiang Sun; Yumei Wang; Pei-Tian Goh; Mónica Lopes-Marques; L. Filipe C. Castro; Óscar Monroig; Meng-Kiat Kuah; et al. "Evolution and Functional Characteristics of the Novel elovl8 That Play Pivotal Roles in Fatty Acid Biosynthesis". Genes (2021): https://doi.org/10.3390/genes12081287.
    10.3390/genes12081287
  34. Tereza Almeida; Yuko Ohta; Arnaud Gaigher; Antonio Muñoz-Mérida; Fabiana Neves; L. Filipe C. Castro; André M. Machado; et al. "A Highly Complex, MHC-Linked, 350 Million-Year-Old Shark Nonclassical Class I Lineage". The Journal of Immunology (2021): ji2000851-ji2000851. https://doi.org/10.4049/jimmunol.2000851.
    10.4049/jimmunol.2000851
  35. Bárbara Matos; Stephen J. Publicover; Luis Filipe C. Castro; Pedro J. Esteves; Margarida Fardilha. "Brain and testis: more alike than previously thought?". Open Biology (2021): https://doi.org/10.1098/rsob.200322.
    10.1098/rsob.200322
  36. Renato B. Ferraz; André L.S. Modesto; Isabel Cunha; Rodrigo Ozório; Fernanda L.A. O´Sullivan; Ana L. Salaro; Óscar Monroig; L. Filipe C. Castro. "Regulation of gene expression associated with LC-PUFA metabolism in juvenile tambaqui ( Colossoma macropomum ) fed different dietary oil sources". Aquaculture Research (2021): https://doi.org/10.1111/are.15236.
    10.1111/are.15236
  37. da Fonseca, Rute ; Campos, Paula ; Rey de la Iglesia, Alba; Barroso, , Gustavo; Bergeron, Lucie ; Nande, Manuel; Tuya, Fernando; et al. "Low coverage whole genome sequencing reveals the underlying structure of European sardine populations". (2021): https://doi.org/10.22541/au.161628445.52373083/v1.
  38. Gomes-dos-Santos, A.; Vilas-Arrondo, N.; Machado, A.M.; Veríssimo, A.; Pérez, M.; Baldó, F.; Castro, L.F.C.; Froufe, E.. "Shedding light on the Chimaeridae taxonomy: the complete mitochondrial genome of the cartilaginous fish Hydrolagus mirabilis (Collett, 1904) (Holocephali: Chimaeridae)". Mitochondrial DNA Part B: Resources 6 2 (2021): 420-422. http://www.scopus.com/inward/record.url?eid=2-s2.0-85100942879&partnerID=MN8TOARS.
    10.1080/23802359.2020.1870887
  39. Gomes-dos-Santos, A.; Machado, A.M.; Aranha, S.G.; Dias, E.; Veríssimo, A.; Castro, L.F.C.; Froufe, E.. "The complete mitochondrial genome of the endemic Iberian pygmy skate Neoraja iberica Stehmann, Séret, Costa, & Baro 2008 (Elasmobranchii, Rajidae)". Mitochondrial DNA Part B: Resources 6 3 (2021): 848-850. http://www.scopus.com/inward/record.url?eid=2-s2.0-85102919444&partnerID=MN8TOARS.
    10.1080/23802359.2021.1884030
  40. Sun, S.; Cao, X.; Castro, L.F.C.; Monroig, Ó.; Gao, J.. "A network-based approach to identify protein kinases critical for regulating srebf1 in lipid deposition causing obesity". Functional and Integrative Genomics 21 5-6 (2021): 557-570. http://www.scopus.com/inward/record.url?eid=2-s2.0-85111506672&partnerID=MN8TOARS.
    10.1007/s10142-021-00798-5
  41. Barros-García, D.; Gomes-dos-Santos, A.; Machado, A.M.; Castro, L.F.C.; de Carlos, A.; Bañón, R.; Bruno, I.; Arronte, J.C.; Froufe, E.. "Complete mitogenome of the Oven's halosaur, Halosaurus ovenii (Elopomorpha; Notacanthiformes)". Mitochondrial DNA Part B: Resources 6 4 (2021): 1571-1572. http://www.scopus.com/inward/record.url?eid=2-s2.0-85105466140&partnerID=MN8TOARS.
    10.1080/23802359.2021.1914518
  42. Valente, R.; Alves, L.Q.; Nabais, M.; Alves, F.; Sousa-Pinto, I.; Ruivo, R.; Castro, L.F.C.. "Convergent Cortistatin losses parallel modifications in circadian rhythmicity and energy homeostasis in Cetacea and other mammalian lineages". Genomics 113 1 (2021): 1064-1070. http://www.scopus.com/inward/record.url?eid=2-s2.0-85095851915&partnerID=MN8TOARS.
    10.1016/j.ygeno.2020.11.002
  43. Capitão, A.M.F.; Lopes-Marques, M.; Páscoa, I.; Sainath, S.B.; Hiromori, Y.; Matsumaru, D.; Nakanishi, T.; et al. "An ancestral nuclear receptor couple, PPAR-RXR, is exploited by organotins". Science of the Total Environment 797 (2021): http://www.scopus.com/inward/record.url?eid=2-s2.0-85110607843&partnerID=MN8TOARS.
    10.1016/j.scitotenv.2021.149044
  44. Gomes-Dos-Santos, A.; Lopes-Lima, M.; Machado, A.M.; Marcos Ramos, A.; Usié, A.; Bolotov, I.N.; Vikhrev, I.V.; et al. "The Crown Pearl: a draft genome assembly of the European freshwater pearl mussel Margaritifera margaritifera (Linnaeus, 1758)". DNA research : an international journal for rapid publication of reports on genes and genomes 28 2 (2021): http://www.scopus.com/inward/record.url?eid=2-s2.0-85107084604&partnerID=MN8TOARS.
    10.1093/dnares/dsab002
  45. Águeda-Pinto, A.; Alves, L.Q.; Neves, F.; McFadden, G.; Jacobs, B.L.; Castro, L.F.C.; Rahman, M.M.; Esteves, P.J.. "Convergent Loss of the Necroptosis Pathway in Disparate Mammalian Lineages Shapes Viruses Countermeasures". Frontiers in Immunology 12 (2021): http://www.scopus.com/inward/record.url?eid=2-s2.0-85115140190&partnerID=MN8TOARS.
    10.3389/fimmu.2021.747737
  46. Alves, L.Q.; Ruivo, R.; Valente, R.; Fonseca, M.M.; Machado, A.M.; Plön, S.; Monteiro, N.; et al. "A drastic shift in the energetic landscape of toothed whale sperm cells". Current Biology 31 16 (2021): 3648-3655.e9. http://www.scopus.com/inward/record.url?eid=2-s2.0-85111724679&partnerID=MN8TOARS.
    10.1016/j.cub.2021.05.062
  47. Gomes-dos-Santos, A.; Hagemann, A.; Valente, L.; Malzahn, A.M.; Monroig, Ó.; Froufe, E.; Castro, L.F.C.. "Complete mitochondrial genome of the ragworm annelid Hediste diversicolor (of Müller, 1776) (Annelida: Nereididae)". Mitochondrial DNA Part B: Resources 6 10 (2021): 2849-2851. http://www.scopus.com/inward/record.url?eid=2-s2.0-85114336594&partnerID=MN8TOARS.
    10.1080/23802359.2021.1970644
  48. Domínguez-Perez, D.; Almeida, D.; Wissing, J.; Machado, A.M.; Jänsch, L.; Antunes, A.; Castro, L.F.; et al. "Proteogenomic characterization of the cement and adhesive gland of the pelagic gooseneck barnacle lepas anatifera". International Journal of Molecular Sciences 22 7 (2021): http://www.scopus.com/inward/record.url?eid=2-s2.0-85103063026&partnerID=MN8TOARS.
    10.3390/ijms22073370
  49. Gomes-dos-Santos, André; Machado, André; Graça Aranha, Sofia; Dias, Ester; VERISSIMO, ANA; C. Castro, L. Filipe; Froufe, Elsa. "The complete mitochondrial genome of the endemic Iberian pygmy skate Neoraja iberica Stehmann, Séret, Costa & Baro 2008 (Elasmobranchii, Rajidae)". (2021):
    Accepted
  50. Teresa Neuparth; André M. Machado; Rosa Montes; Rosario Rodil; Susana Barros; Nélson Alves; Raquel Ruivo; et al. "Transcriptomic data on the transgenerational exposure of the keystone amphipod Gammarus locusta to simvastatin". Data in Brief 32 (2020): 106248-106248. https://doi.org/10.1016/j.dib.2020.106248.
    10.1016/j.dib.2020.106248
  51. Nair Vilas Arrondo; André Gomes-dos-Santos; Esther Román Marcote; Montse Pérez; Elsa Froufe; L. Filipe C. Castro. "A new gene order in the mitochondrial genome of the deep-sea diaphanous hatchet fish Sternoptyx diaphana Hermann, 1781 (Stomiiformes: Sternoptychidae)". Mitochondrial DNA Part B 5 3 (2020): 2859-2861. https://doi.org/10.1080/23802359.2020.1790325.
    10.1080/23802359.2020.1790325
  52. Luís Q Alves; Raquel Ruivo; Miguel M Fonseca; Mónica Lopes-Marques; Pedro Ribeiro; L Filipe C Castro. "PseudoChecker: an integrated online platform for gene inactivation inference". Nucleic Acids Research (2020): https://doi.org/10.1093/nar/gkaa408.
    10.1093/nar/gkaa408
  53. André Gomes-dos-Santos; Manuel Lopes-Lima; L. Filipe C. Castro; Elsa Froufe. "Molluscan genomics: the road so far and the way forward". Hydrobiologia 847 7 (2020): 1705-1726. https://doi.org/10.1007/s10750-019-04111-1.
    10.1007/s10750-019-04111-1
  54. André Gomes-dos-Santos; Nair Vilas Arrondo; André M. Machado; Ana Veríssimo; Montse Pérez; Esther Román; L. Filipe C. Castro; Elsa Froufe. "The complete mitochondrial genome of the deep-water cartilaginous fish Hydrolagus affinis (de Brito Capello, 1868) (Holocephali: Chimaeridae)". Mitochondrial DNA Part B (2020): https://doi.org/10.1080/23802359.2020.1749154.
    10.1080/23802359.2020.1749154
  55. Capela, R.; Garric, J.; Castro, L.F.C.; Santos, M.M.. "Embryo bioassays with aquatic animals for toxicity testing and hazard assessment of emerging pollutants: A review". Science of the Total Environment 705 (2020): http://www.scopus.com/inward/record.url?eid=2-s2.0-85076181497&partnerID=MN8TOARS.
    10.1016/j.scitotenv.2019.135740
  56. Domínguez-Pérez, D.; Almeida, D.; Wissing, J.; Machado, A.M.; Jänsch, L.; Castro, L.F.; Antunes, A.; et al. "The Quantitative Proteome of the Cement and Adhesive Gland of the Pedunculate Barnacle, Pollicipes pollicipes". International journal of molecular sciences 21 7 (2020): http://www.scopus.com/inward/record.url?eid=2-s2.0-85083022799&partnerID=MN8TOARS.
    10.3390/ijms21072524
  57. Capitão, A.; Lopes-Marques, M.; Páscoa, I.; Ruivo, R.; Mendiratta, N.; Fonseca, E.; Castro, L.F.C.; Santos, M.M.. "The Echinodermata PPAR: Functional characterization and exploitation by the model lipid homeostasis regulator tributyltin". Environmental Pollution 263 (2020): http://www.scopus.com/inward/record.url?eid=2-s2.0-85082755161&partnerID=MN8TOARS.
    10.1016/j.envpol.2020.114467
  58. Da Fonseca, R.R.; Couto, A.; Machado, A.M.; Brejova, B.; Albertin, C.B.; Silva, F.; Gardner, P.; et al. "A draft genome sequence of the elusive giant squid, Architeuthis dux". GigaScience 9 1 (2020): http://www.scopus.com/inward/record.url?eid=2-s2.0-85077940907&partnerID=MN8TOARS.
    10.1093/gigascience/giz152
  59. Fonseca, E.; Ruivo, R.; Borges, D.; Franco, J.N.; Santos, M.M.; Castro, L.F.C.. "Of retinoids and organotins: The evolution of the retinoid x receptor in metazoa". Biomolecules 10 4 (2020): http://www.scopus.com/inward/record.url?eid=2-s2.0-85083407391&partnerID=MN8TOARS.
    10.3390/biom10040594
  60. Ferraz, R.B.; Machado, A.M.; Navarro, J.C.; Cunha, I.; Ozório, R.; Salaro, A.L.; Castro, L.F.C.; Monroig, Ó.. "The fatty acid elongation genes elovl4a and elovl4b are present and functional in the genome of tambaqui (Colossoma macropomum)". Comparative Biochemistry and Physiology Part - B: Biochemistry and Molecular Biology 245 (2020): http://www.scopus.com/inward/record.url?eid=2-s2.0-85083668038&partnerID=MN8TOARS.
    10.1016/j.cbpb.2020.110447
  61. Fonseca, E.; Machado, A.M.; Vilas-Arrondo, N.; Gomes-dos-Santos, A.; Veríssimo, A.; Esteves, P.; Almeida, T.; et al. "Cartilaginous fishes offer unique insights into the evolution of the nuclear receptor gene repertoire in gnathostomes". General and Comparative Endocrinology 295 (2020): http://www.scopus.com/inward/record.url?eid=2-s2.0-85086574669&partnerID=MN8TOARS.
    10.1016/j.ygcen.2020.113527
  62. Capela, R.; Garric, J.; Costa Castro, L.F.; Santos, M.M.. "Data collection on the use of embryo bioassays with aquatic animals for toxicity testing and hazard assessment of emerging pollutants". Data in Brief 29 (2020): http://www.scopus.com/inward/record.url?eid=2-s2.0-85079116636&partnerID=MN8TOARS.
    10.1016/j.dib.2020.105220
  63. Ferreira, M.; Larsen, B.K.; Granby, K.; Cunha, S.C.; Monteiro, C.; Fernandes, J.O.; Nunes, M.L.; et al. "Diets supplemented with Saccharina latissima influence the expression of genes related to lipid metabolism and oxidative stress modulating rainbow trout (Oncorhynchus mykiss) fillet composition". Food and Chemical Toxicology 140 (2020): http://www.scopus.com/inward/record.url?eid=2-s2.0-85084038588&partnerID=MN8TOARS.
    10.1016/j.fct.2020.111332
  64. Gomes-dos-Santos, A.; Nande, M.; Espinoza-Ramos, L.A.; Pepe-Victoriano, R.G.; Contreras-Mamani, Z.; Huanacuni, J.I.; Quispe-Mayta, J.M.; et al. "Constructing the mitochondrial genome of the Peruvian grunt Anisotremus scapularis Tschudi, 1846 (Lutjaniformes: Haemulidae) using RNA-seq data". Mitochondrial DNA Part B: Resources 5 2 (2020): 1921-1923. http://www.scopus.com/inward/record.url?eid=2-s2.0-85083708796&partnerID=MN8TOARS.
    10.1080/23802359.2020.1754950
  65. Almeida, T.; Gaigher, A.; Muñoz-Mérida, A.; Neves, F.; Castro, L.F.C.; Flajnik, M.F.; Ohta, Y.; Esteves, P.J.; Veríssimo, A.. "Cartilaginous fish class II genes reveal unprecedented old allelic lineages and confirm the late evolutionary emergence of DM". Molecular Immunology 128 (2020): 125-138. http://www.scopus.com/inward/record.url?eid=2-s2.0-85094218995&partnerID=MN8TOARS.
    10.1016/j.molimm.2020.10.003
  66. Machado, A.M.; Muñoz-Merida, A.; Fonseca, E.; Veríssimo, A.; Pinto, R.; Felício, M.; da Fonseca, R.R.; Froufe, E.; Castro, L.F.C.. "Liver transcriptome resources of four commercially exploited teleost species". Scientific Data 7 1 (2020): http://www.scopus.com/inward/record.url?eid=2-s2.0-85087657432&partnerID=MN8TOARS.
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  124. Cruzeiro, C.; Lopes-Marques, M.; Ruivo, R.; Rodrigues-Oliveira, N.; Santos, M.M.; Rocha, M.J.; Rocha, E.; Castro, L.F.C.. "A mollusk VDR/PXR/CAR-like (NR1J) nuclear receptor provides insight into ancient detoxification mechanisms". Aquatic Toxicology 174 (2016): 61-69. http://www.scopus.com/inward/record.url?eid=2-s2.0-84958999112&partnerID=MN8TOARS.
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  125. Castro, L.F.C.; Tocher, D.R.; Monroig, O.. "Long-chain polyunsaturated fatty acid biosynthesis in chordates: Insights into the evolution of Fads and Elovl gene repertoire". Progress in Lipid Research 62 (2016): 25-40. http://www.scopus.com/inward/record.url?eid=2-s2.0-84955459498&partnerID=MN8TOARS.
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  126. Gesto, M.; Ruivo, R.; Páscoa, I.; André, A.; Castro, L.F.C.; Santos, M.M.. "Retinoid level dynamics during gonad recycling in the limpet Patella vulgata". General and Comparative Endocrinology 225 (2016): 142-148. http://www.scopus.com/inward/record.url?eid=2-s2.0-84949570943&partnerID=MN8TOARS.
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  127. Ferreira-Martins, D.; McCormick, S.D.; Campos, A.; Lopes-Marques, M.; Osório, H.; Coimbra, J.; Castro, L.F.C.; Wilson, J.M.. "A cytosolic carbonic anhydrase molecular switch occurs in the gills of metamorphic sea lamprey". Scientific Reports 6 (2016): http://www.scopus.com/inward/record.url?eid=2-s2.0-84990208245&partnerID=MN8TOARS.
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  129. Cunha, I.; Galante-Oliveira, S.; Rocha, E.; Urbatzka, R.; Castro, L.F.C.. "Expression of intercellular lipid transport and cholesterol metabolism genes in eggs and early larvae stages of turbot, Scophthalmus maximus, a marine aquaculture species". Marine Biology 162 8 (2015): 1673-1683. http://www.scopus.com/inward/record.url?eid=2-s2.0-84938954975&partnerID=MN8TOARS.
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  131. Lima, D.; Castro, L.F.C.; Coelho, I.; Lacerda, R.; Gesto, M.; Soares, J.; André, A.; et al. "Effects of tributyltin and other retinoid receptor agonists in reproductive-related endpoints in the Zebrafish (Danio rerio)". Journal of Toxicology and Environmental Health - Part A: Current Issues 78 12 (2015): 747-760. http://www.scopus.com/inward/record.url?eid=2-s2.0-84931863911&partnerID=MN8TOARS.
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  132. Madureira, T.V.; Malhão, F.; Pinheiro, I.; Lopes, C.; Ferreira, N.; Urbatzka, R.; Castro, L.F.C.; Rocha, E.. "Estrogenic and anti-estrogenic influences in cultured brown trout hepatocytes: Focus on the expression of some estrogen and peroxisomal related genes and linked phenotypic anchors". Aquatic Toxicology 169 (2015): 133-142. http://www.scopus.com/inward/record.url?eid=2-s2.0-84946404681&partnerID=MN8TOARS.
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  133. Urbatzka, R.; Galante-Oliveira, S.; Rocha, E.; Lobo-da-Cunha, A.; Castro, L.F.C.; Cunha, I.. "Effects of the PPARa agonist WY-14,643 on plasma lipids, enzymatic activities and mRNA expression of lipid metabolism genes in a marine flatfish, Scophthalmus maximus". Aquatic Toxicology 164 (2015): 155-162. http://www.scopus.com/inward/record.url?eid=2-s2.0-84929119141&partnerID=MN8TOARS.
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  134. nica Lopes-Marques, M.; Ruivo, R.; Delgado, I.; Wilson, J.M.; Aluru, N.; Castro, L.F.C.. "Basal gnathostomes provide unique insights into the evolution of vitamin B12 binders". Genome Biology and Evolution 7 2 (2015): 457-464. http://www.scopus.com/inward/record.url?eid=2-s2.0-84928233861&partnerID=MN8TOARS.
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  135. Lopes-Marques, M.; Delgado, I.L.S.; Ruivo, R.; Torres, Y.; Sainath, S.B.; Rocha, E.; Cunha, I.; Santos, M.M.; Castro, L.F.C.. "The origin and diversity of Cpt1 genes in vertebrate species". PLoS ONE 10 9 (2015): http://www.scopus.com/inward/record.url?eid=2-s2.0-84947999067&partnerID=MN8TOARS.
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  136. Coimbra, A.M.; Peixoto, M.J.; Coelho, I.; Lacerda, R.; Carvalho, A.P.; Gesto, M.; Lyssimachou, A.; et al. "Chronic effects of clofibric acid in zebrafish (Danio rerio): A multigenerational study". Aquatic Toxicology 160 (2015): 76-86. http://www.scopus.com/inward/record.url?eid=2-s2.0-84928704596&partnerID=MN8TOARS.
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  137. Gutierrez-Mazariegos, J.; Nadendla, E.K.; Lima, D.; Pierzchalski, K.; Jones, J.W.; Kane, M.; Nishikawa, J.-I.; et al. "A mollusk retinoic acid receptor (RAR) ortholog sheds light on the evolution of ligand binding". Endocrinology 155 11 (2014): 4275-4286. http://www.scopus.com/inward/record.url?eid=2-s2.0-84908022861&partnerID=MN8TOARS.
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  138. Castro, L.F.C.; Santos, M.M.. "To bind or not to bind: The taxonomic scope of nuclear receptor mediated endocrine disruption in invertebrate phyla". Environmental Science and Technology 48 10 (2014): 5361-5363. http://www.scopus.com/inward/record.url?eid=2-s2.0-84901008912&partnerID=MN8TOARS.
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  139. Castro, L.F.; Gonçalves, O.; Mazan, S.; Tay, B.H.; Venkatesh, B.; Wilson, J.M.. "Recurrent gene loss correlates with the evolution of stomach phenotypes in gnathostome history.". Proceedings. Biological sciences / The Royal Society 281 1775 (2014): http://www.scopus.com/inward/record.url?eid=2-s2.0-84906072076&partnerID=MN8TOARS.
  140. André, A.; Ruivo, R.; Gesto, M.; Castro, L.F.C.; Santos, M.M.. "Retinoid metabolism in invertebrates: When evolution meets endocrine disruption". General and Comparative Endocrinology 208 (2014): 134-145. http://www.scopus.com/inward/record.url?eid=2-s2.0-84907519414&partnerID=MN8TOARS.
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  141. Castro, L.F.C.; Gonçalves, O.; Mazan, S.; Tay, B.-H.; Venkatesh, B.; Wilson, J.M.. "Recurrent gene loss correlates with the evolution of stomach phenotypes in gnathostome history". Proceedings of the Royal Society B: Biological Sciences 281 1775 (2013): http://www.scopus.com/inward/record.url?eid=2-s2.0-84902668660&partnerID=MN8TOARS.
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  142. Cunha, I.; Galante-Oliveira, S.; Rocha, E.; Planas, M.; Urbatzka, R.; Castro, L.F.C.. "Dynamics of PPARs, fatty acid metabolism genes and lipid classes in eggs and early larvae of a teleost". Comparative Biochemistry and Physiology - B Biochemistry and Molecular Biology 164 4 (2013): 247-258. http://www.scopus.com/inward/record.url?eid=2-s2.0-84874439674&partnerID=MN8TOARS.
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  143. Lopes-Marques, M.; Cunha, I.; Reis-Henriques, M.A.; Santos, M.M.; Castro, L.F.C.. "Diversity and history of the long-chain acyl-CoA synthetase (Acsl) gene family in vertebrates". BMC Evolutionary Biology 13 1 (2013): http://www.scopus.com/inward/record.url?eid=2-s2.0-84890005177&partnerID=MN8TOARS.
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  144. Abidli, S.; Castro, L.F.C.; Lahbib, Y.; Reis-Henriques, M.A.; Trigui El Menif, N.; Santos, M.M.. "Imposex development in Hexaplex trunculus (Gastropoda: Caenogastropoda) involves changes in the transcription levels of the retinoid X receptor (RXR)". Chemosphere 93 6 (2013): 1161-1167. http://www.scopus.com/inward/record.url?eid=2-s2.0-84885833737&partnerID=MN8TOARS.
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  145. Sárria, M.P.; Santos, M.M.; Castro, L.F.C.; Vieira, N.M.; Monteiro, N.M.. "Estrogenic chemical effects are independent from the degree of sex role reversal in pipefish". Journal of Hazardous Materials 263 (2013): 746-753. http://www.scopus.com/inward/record.url?eid=2-s2.0-84889089389&partnerID=MN8TOARS.
    10.1016/j.jhazmat.2013.10.043
  146. Ferreira, F.; Monteiro, N.M.; Vieira, M.N.; Reis-Henriques, M.A.; Castro, L.F.C.; Santos, M.M.. "A real-time PCR assay for differential expression of vitellogenin i and II genes in the liver of the sentinel fish species Lipophrys pholis". Toxicology Mechanisms and Methods 23 8 (2013): 591-597. http://www.scopus.com/inward/record.url?eid=2-s2.0-84886400050&partnerID=MN8TOARS.
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  147. Radzisheuskaya, A.; Le Bin Chia, G.; Dos Santos, R.L.; Theunissen, T.W.; Castro, L.F.C.; Nichols, J.; Silva, J.C.R.. "A defined Oct4 level governs cell state transitions of pluripotency entry and differentiation into all embryonic lineages". Nature Cell Biology 15 6 (2013): 579-590. http://www.scopus.com/inward/record.url?eid=2-s2.0-84878579948&partnerID=MN8TOARS.
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  148. Gesto, M.; Castro, L.F.C.; Santos, M.M.. "Differences in retinoid levels and metabolism among gastropod lineages: Imposex-susceptible gastropods lack the ability to store retinoids in the form of retinyl esters". Aquatic Toxicology 142-143 (2013): 96-103. http://www.scopus.com/inward/record.url?eid=2-s2.0-84882967901&partnerID=MN8TOARS.
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  149. Lima, D.; MacHado, A.; Reis-Henriques, M.A.; Rocha, E.; Santos, M.M.; Castro, L.F.C.. "Cloning and expression analysis of the 17ß hydroxysteroid dehydrogenase type 12 (HSD17B12) in the neogastropod Nucella lapillus". Journal of Steroid Biochemistry and Molecular Biology 134 1 (2013): 8-14. http://www.scopus.com/inward/record.url?eid=2-s2.0-84869145337&partnerID=MN8TOARS.
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  150. Castro, L.F.C.; Lobo-da-Cunha, A.; Rocha, M.J.; Urbatzka, R.; Rocha, E.. "Pex11a in brown trout (Salmo trutta f. fario): Expression dynamics during the reproductive cycle reveals sex-specific seasonal patterns". Comparative Biochemistry and Physiology - A Molecular and Integrative Physiology 164 1 (2013): 207-214. http://www.scopus.com/inward/record.url?eid=2-s2.0-84870253034&partnerID=MN8TOARS.
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  151. Urbatzka, R.; Galante-Oliveira, S.; Rocha, E.; Castro, L.F.C.; Cunha, I.. "Normalization strategies for gene expression studies by real-time PCR in a marine fish species, Scophthalmus maximus". Marine Genomics 10 (2013): 17-25. http://www.scopus.com/inward/record.url?eid=2-s2.0-84877664667&partnerID=MN8TOARS.
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  152. Urbatzka, R.; Galante-Oliveira, S.; Rocha, E.; Castro, L.F.C.; Cunha, I.. "Tissue expression of PPAR-alpha isoforms in Scophthalmus maximus and transcriptional response of target genes in the heart after exposure to WY-14643". Fish Physiology and Biochemistry 39 4 (2013): 1043-1055. http://www.scopus.com/inward/record.url?eid=2-s2.0-84879843607&partnerID=MN8TOARS.
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  153. Carneiro, J.; Duarte-Pereira, S.; Azevedo, L.; Castro, L.F.C.; Aguiar, P.; Moreira, I.S.; Amorim, A.; Silva, R.M.. "The Evolutionary Portrait of Metazoan NAD Salvage". PLoS ONE 8 5 (2013): http://www.scopus.com/inward/record.url?eid=2-s2.0-84878391235&partnerID=MN8TOARS.
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  154. Philip, S.; Castro, L.F.C.; Da Fonseca, R.R.; Reis-Henriques, M.A.; Vasconcelos, V.; Santos, M.M.; Antunes, A.. "Adaptive evolution of the Retinoid X receptor in vertebrates". Genomics 99 2 (2012): 81-89. http://www.scopus.com/inward/record.url?eid=2-s2.0-84856458490&partnerID=MN8TOARS.
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  155. Costa, J.; Reis-Henriques, M.A.; Castro, L.F.C.; Ferreira, M.. "ABC transporters, CYP1A and GSTa gene transcription patterns in developing stages of the Nile tilapia (Oreochromis niloticus)". Gene 506 2 (2012): 317-324. http://www.scopus.com/inward/record.url?eid=2-s2.0-84864568459&partnerID=MN8TOARS.
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  156. Costa, J.; Reis-Henriques, M.A.; Castro, L.F.C.; Ferreira, M.. "Gene expression analysis of ABC efflux transporters, CYP1A and GSTa in Nile tilapia after exposure to benzo(a)pyrene". Comparative Biochemistry and Physiology - C Toxicology and Pharmacology 155 3 (2012): 469-482. http://www.scopus.com/inward/record.url?eid=2-s2.0-84858794993&partnerID=MN8TOARS.
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  157. Castro, L.F.; Monroig, O.; Leaver, M.J.; Wilson, J.; Cunha, I.; Tocher, D.R.. "Functional desaturase Fads1 (¿5) and Fads2 (¿6) orthologues evolved before the origin of jawed vertebrates.". PloS one 7 2 (2012): http://www.scopus.com/inward/record.url?eid=2-s2.0-84865314614&partnerID=MN8TOARS.
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  158. Castro, L.F.C.; Lopes-Marques, M.; Wilson, J.M.; Rocha, E.; Reis-Henriques, M.A.; Santos, M.M.; Cunha, I.. "A novel Acetyl-CoA synthetase short-chain subfamily member 1 (Acss1) gene indicates a dynamic history of paralogue retention and loss in vertebrates". Gene 497 2 (2012): 249-255. http://www.scopus.com/inward/record.url?eid=2-s2.0-84862829496&partnerID=MN8TOARS.
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  159. Gesto, M.; Castro, L.F.C.; Reis-Henriques, M.A.; Santos, M.M.. "Tissue-specific distribution patterns of retinoids and didehydroretinoids in rainbow trout Oncorhynchus mykiss". Comparative Biochemistry and Physiology - B Biochemistry and Molecular Biology 161 1 (2012): 69-78. http://www.scopus.com/inward/record.url?eid=2-s2.0-84856482907&partnerID=MN8TOARS.
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  160. Castro, L.F.C.; Lopes-Marques, M.; Gonçalves, O.; Wilson, J.M.. "The evolution of pepsinogen C genes in vertebrates: Duplication, loss and functional diversification". PLoS ONE 7 3 (2012): http://www.scopus.com/inward/record.url?eid=2-s2.0-84863247989&partnerID=MN8TOARS.
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  161. Soares, J.; Castro, L.F.C.; Reis-Henriques, M.A.; Monteiro, N.M.; Santos, M.M.. "Zebrafish (Danio rerio) life-cycle exposure to chronic low doses of ethinylestradiol modulates p53 gene transcription within the gonads, but not NER pathways". Ecotoxicology 21 5 (2012): 1513-1522. http://www.scopus.com/inward/record.url?eid=2-s2.0-84864965676&partnerID=MN8TOARS.
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  162. Abidli, S.; Santos, M.M.; Lahbib, Y.; Castro, L.F.C.; Reis-Henriques, M.A.; Trigui El Menif, N.. "Tributyltin (TBT) effects on Hexaplex trunculus and Bolinus brandaris (Gastropoda: Muricidae): Imposex induction and sex hormone levels insights". Ecological Indicators 13 1 (2012): 13-21. http://www.scopus.com/inward/record.url?eid=2-s2.0-80955181064&partnerID=MN8TOARS.
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  163. Ribeiro, C.; Urbatzka, R.; Castro, L.F.C.; Carrola, J.; Fontainhas-Fernandes, A.; Monteiro, R.A.F.; Rocha, E.; Rocha, M.J.. "In vitro exposure of Nile tilapia (Oreochromis niloticus) testis to estrogenic endocrine disrupting chemicals: mRNA expression of genes encoding steroidogenic enzymes". Toxicology Mechanisms and Methods 22 1 (2012): 47-53. http://www.scopus.com/inward/record.url?eid=2-s2.0-83455166345&partnerID=MN8TOARS.
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  164. Gesto, M.; Castro, L.F.C.; Reis-Henriques, M.A.; Santos, M.M.. "Retinol metabolism in the mollusk osilinus lineatus indicates an ancient origin for retinyl ester storage capacity". PLoS ONE 7 4 (2012): http://www.scopus.com/inward/record.url?eid=2-s2.0-84859514628&partnerID=MN8TOARS.
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  165. Coelho, I.; Lima, D.; André, A.; Melo, C.; Ruivo, R.; Reis-Henriques, M.A.; Santos, M.M.; Castro, L.F.C.. "Molecular characterization of Adh3 from the mollusc Nucella lapillus: Tissue gene expression after tributyltin and retinol exposure". Journal of Molluscan Studies 78 4 (2012): 343-348. http://www.scopus.com/inward/record.url?eid=2-s2.0-84868033168&partnerID=MN8TOARS.
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  166. Theunissen, T.W.; Costa, Y.; Radzisheuskaya, A.; van Oosten, A.L.; Lavial, F.; Pain, B.; Castro, L.F.C.; Silva, J.C.R.. "Reprogramming capacity of Nanog is functionally conserved in vertebrates and resides in a unique homeodomain". Development 138 22 (2011): 4853-4865. http://www.scopus.com/inward/record.url?eid=2-s2.0-80054906800&partnerID=MN8TOARS.
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  167. Neves, J.V.; Wilson, J.M.; Kuhl, H.; Reinhardt, R.; Castro, L.F.C.; Rodrigues, P.N.S.. "Natural history of SLC11 genes in vertebrates: Tales from the fish world". BMC Evolutionary Biology 11 1 (2011): http://www.scopus.com/inward/record.url?eid=2-s2.0-79955087907&partnerID=MN8TOARS.
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  168. Castro, L.F.C.; Wilson, J.M.; Gonçalves, O.; Galante-Oliveira, S.; Rocha, E.; Cunha, I.. "The evolutionary history of the stearoyl-CoA desaturase gene family in vertebrates". BMC Evolutionary Biology 11 1 (2011): http://www.scopus.com/inward/record.url?eid=2-s2.0-79956002928&partnerID=MN8TOARS.
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  169. Lima, D; Reis Henriques, MA; Silva, R; Santos, AI; Castro, LFC; Santos, MM. "Tributyltin-induced imposex in marine gastropods involves tissue-specific modulation of the retinoid X receptor". AQUATIC TOXICOLOGY (2011):
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  170. Sarria, MP; Soares, J; Vieira, MN; Filipe, L; Castro, C; Santos, MM; Monteiro, NM. "Rapid-behaviour responses as a reliable indicator of estrogenic chemical toxicity in zebrafish juveniles". CHEMOSPHERE (2011):
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  171. Castro, L.F.C.; Rocha, M.J.; Lobo-da-Cunha, A.; Batista-Pinto, C.; Machado, A.; Rocha, E.. "The 17ß-hydroxysteroid dehydrogenase 4: Gender-specific and seasonal gene expression in the liver of brown trout (Salmo trutta f. fario)". Comparative Biochemistry and Physiology - B Biochemistry and Molecular Biology 153 2 (2009): 157-164. http://www.scopus.com/inward/record.url?eid=2-s2.0-66949137818&partnerID=MN8TOARS.
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  172. Batista-Pinto, C.; Rocha, E.; Castro, L.F.C.; Rodrigues, P.; Lobo-da-Cunha, A.. "Seasonal and gender variation of peroxisome proliferator activated receptors expression in brown trout liver". General and Comparative Endocrinology 161 1 (2009): 146-152. http://www.scopus.com/inward/record.url?eid=2-s2.0-60749117732&partnerID=MN8TOARS.
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  173. Ferreira, F.; Santos, M.M.; Castro, L.F.C.; Reis-Henriques, M.A.; Lima, D.; Vieira, M.N.; Monteiro, N.M.. "Vitellogenin gene expression in the intertidal blenny Lipophrys pholis: A new sentinel species for estrogenic chemical pollution monitoring in the European Atlantic coast?". Comparative Biochemistry and Physiology - C Toxicology and Pharmacology 149 1 (2009): 58-64. http://www.scopus.com/inward/record.url?eid=2-s2.0-56949104846&partnerID=MN8TOARS.
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  174. Santos, M.M.; Enes, P.; Reis-Henriques, M.A.; Kuballa, J.; Castro, L.F.C.; Vieira, M.N.. "Organotin levels in seafood from Portuguese markets and the risk for consumers". Chemosphere 75 5 (2009): 661-666. http://www.scopus.com/inward/record.url?eid=2-s2.0-64149118377&partnerID=MN8TOARS.
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  175. Soares, J.; Coimbra, A.M.; Reis-Henriques, M.A.; Monteiro, N.M.; Vieira, M.N.; Oliveira, J.M.A.; Guedes-Dias, P.; et al. "Disruption of zebrafish (Danio rerio) embryonic development after full life-cycle parental exposure to low levels of ethinylestradiol". Aquatic Toxicology 95 4 (2009): 330-338. http://www.scopus.com/inward/record.url?eid=2-s2.0-71849083390&partnerID=MN8TOARS.
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  176. Kortner, T.M.; Rocha, E.; Silva, P.; Castro, L.F.C.; Arukwe, A.. "Genomic approach in evaluating the role of androgens on the growth of Atlantic cod (Gadus morhua) previtellogenic oocytes". Comparative Biochemistry and Physiology - Part D: Genomics and Proteomics 3 3 (2008): 205-218. http://www.scopus.com/inward/record.url?eid=2-s2.0-47849111881&partnerID=MN8TOARS.
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  177. Santos, M.M.; Reis-Henriques, M.A.; Guillot, R.; Lima, D.; Franco-Duarte, R.; Mendes, I.; Queirós, S.; Castro, L.F.C.. "Anti-androgenic effects of sewage treatment plant effluents in the prosobranch gastropod Nucella lapillus". Comparative Biochemistry and Physiology - C Toxicology and Pharmacology 148 1 (2008): 87-93. http://www.scopus.com/inward/record.url?eid=2-s2.0-44149107048&partnerID=MN8TOARS.
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  178. Castro, L.F.C.; Lima, D.; Machado, A.; Melo, C.; Hiromori, Y.; Nishikawa, J.; Nakanishi, T.; Reis-Henriques, M.A.; Santos, M.M.. "Imposex induction is mediated through the Retinoid X Receptor signalling pathway in the neogastropod Nucella lapillus". Aquatic Toxicology 85 1 (2007): 57-66. http://www.scopus.com/inward/record.url?eid=2-s2.0-34548665935&partnerID=MN8TOARS.
    10.1016/j.aquatox.2007.07.016
  179. Castro, L.F.C.; Melo, C.; Guillot, R.; Mendes, I.; Queirós, S.; Lima, D.; Reis-Henriques, M.A.; Santos, M.M.. "The estrogen receptor of the gastropod Nucella lapillus: Modulation following exposure to an estrogenic effluent?". Aquatic Toxicology 84 4 (2007): 465-468. http://www.scopus.com/inward/record.url?eid=2-s2.0-34548252418&partnerID=MN8TOARS.
    10.1016/j.aquatox.2007.07.008
  180. Gonçalves, A.F.; Castro, L.F.C.; Pereira-Wilson, C.; Coimbra, J.; Wilson, J.M.. "Is there a compromise between nutrient uptake and gas exchange in the gut of Misgurnus anguillicaudatus, an intestinal air-breathing fish?". Comparative Biochemistry and Physiology - Part D: Genomics and Proteomics 2 4 (2007): 345-355. http://www.scopus.com/inward/record.url?eid=2-s2.0-35648978869&partnerID=MN8TOARS.
    10.1016/j.cbd.2007.08.002
  181. Alexandrino, P.; Faria, R.; Linhares, D.; Castro, F.; Le Corre, M.; Sabatié, R.; Baglinière, J.L.; Weiss, S.. "Interspecific differentiation and intraspecific substructure in two closely related clupeids with extensive hybridization, Alosa alosa and Alosa fallax". Journal of Fish Biology 69 SUPPL. B (2006): 242-259. http://www.scopus.com/inward/record.url?eid=2-s2.0-33845538905&partnerID=MN8TOARS.
    10.1111/j.1095-8649.2006.01289.x
  182. Castro, L.F.C.; Rasmussen, S.L.K.; Holland, P.W.H.; Holland, N.D.; Holland, L.Z.. "A Gbx homeobox gene in amphioxus: Insights into ancestry of the ANTP class and evolution of the midbrain/hindbrain boundary". Developmental Biology 295 1 (2006): 40-51. http://www.scopus.com/inward/record.url?eid=2-s2.0-33745887790&partnerID=MN8TOARS.
    10.1016/j.ydbio.2006.03.003
  183. Minguillón, C.; Gardenyes, J.; Serra, E.; Castro, L.F.; Hill-Force, A.; Holland, P.W.; Amemiya, C.T.; Garcia-Fernàndez, J.. "No more than 14: the end of the amphioxus Hox cluster.". International journal of biological sciences 1 1 (2005): 19-23. http://www.scopus.com/inward/record.url?eid=2-s2.0-28844487573&partnerID=MN8TOARS.
  184. Santos, M.M.; Castro, L.F.C.; Vieira, M.N.; Micael, J.; Morabito, R.; Massanisso, P.; Reis-Henriques, M.A.. "New insights into the mechanism of imposex induction in the dogwhelk Nucella lapillus". Comparative Biochemistry and Physiology - C Toxicology and Pharmacology 141 1 (2005): 101-109. http://www.scopus.com/inward/record.url?eid=2-s2.0-21844434956&partnerID=MN8TOARS.
    10.1016/j.cca.2005.05.008
  185. Castro, L.F.C.; Santos, M.M.; Reis-Henriques, M.A.. "The genomic environment around the Aromatase gene: Evolutionary insights". BMC Evolutionary Biology 5 (2005): http://www.scopus.com/inward/record.url?eid=2-s2.0-25444529171&partnerID=MN8TOARS.
    10.1186/1471-2148-5-43
  186. Castro, L.F.C.; Furlong, R.F.; Holland, P.W.H.. "An antecedent of the MHC-linked genomic region in amphioxus". Immunogenetics 55 11 (2004): 782-784. http://www.scopus.com/inward/record.url?eid=2-s2.0-1542359004&partnerID=MN8TOARS.
    10.1007/s00251-004-0642-9
  187. Cabral, H.N.; Castro, F.; Linhares, D.; Alexandrino, P.. "Genetic differentiation of Solea solea (Linnaeus, 1758) and Solea senegalensis Kaup, 1858, (Pisces: Pleuronectiformes) from several estuarine systems of the Portuguese coast,Diferenciacíon genética de Solea solea (Linneus, 1758) y Solea senegalensis Kaup, 1858), (Pisces: Pleuronectiformes) en varios sistemas estuáricos de la costa Portuguesa". Scientia Marina 67 1 (2003): 43-52. http://www.scopus.com/inward/record.url?eid=2-s2.0-0038814743&partnerID=MN8TOARS.
    10.3989/scimar.2003.67n143
  188. Luke, G.N.; Castro, L.F.C.; McLay, K.; Bird, C.; Coulson, A.; Holland, P.W.H.. "Dispersal of NK homeobox gene clusters in amphioxus and humans". Proceedings of the National Academy of Sciences of the United States of America 100 9 (2003): 5292-5295. http://www.scopus.com/inward/record.url?eid=2-s2.0-0038303006&partnerID=MN8TOARS.
    10.1073/pnas.0836141100
  189. Castro, L.F.C.; Holland, P.W.H.. "Chromosomal mapping of ANTP class homeobox genes in amphioxus: Piecing together ancestral genomes". Evolution and Development 5 5 (2003): 459-465. http://www.scopus.com/inward/record.url?eid=2-s2.0-0141454675&partnerID=MN8TOARS.
    10.1046/j.1525-142X.2003.03052.x
  190. Castro, L.F.C.; Holland, P.W.H.. "Fluorescent in situ hybridisation to amphioxus chromosomes". Zoological Science 19 12 (2002): 1349-1353. http://www.scopus.com/inward/record.url?eid=2-s2.0-0036991862&partnerID=MN8TOARS.
    10.2108/zsj.19.1349
  191. Castro, F.; Linhares, D.; Alexandrino, P.. "Acid phosphatase polymorphism in European shad (fish: Clupeids)". Biochemical Genetics 37 7-8 (1999): 251-256. http://www.scopus.com/inward/record.url?eid=2-s2.0-0032705679&partnerID=MN8TOARS.
    10.1023/A:1018746907940
  192. Le Corre, M.; Linhares, D.; Castro, F.; Alexandrino, P.; Sabatié, R.; Bagliniere, J.L.. "Premiers éléments de caractérisation génétique de l'alose du rhône (Alosa fallax rhodanensis roule, 1924)". BFPP - Bulletin Francais de la Peche et de la Protection des Milieux Aquatiques 71 350-51 (1998): 635-645. http://www.scopus.com/inward/record.url?eid=2-s2.0-0010880452&partnerID=MN8TOARS.
    10.1051/kmae:1998031
Preprint
  1. Raul Valente; Miguel Cordeiro; Bernardo Pinto; André Machado; Filipe Alves; Isabel Sousa-Pinto; Raquel Ruivo; L. Filipe C. Castro. "Alterations of Pleiotropic Neuropeptide-Receptor gene couples in Cetacea". 2024. https://doi.org/10.1101/2024.02.03.578746.
    10.1101/2024.02.03.578746
  2. André Gomes-dos-Santos; Manuel Lopes-Lima; André M. Machado; Thomas Forest; Guillaume Achaz; Amílcar Teixeira; Vincent Prié; L. Filipe C. Castro; Elsa Froufe. "The Crown Pearl V2: an improved genome assembly of the European freshwater pearl musselMargaritifera margaritifera(Linnaeus, 1758)". 2023. https://doi.org/10.1101/2023.02.11.528107.
    10.1101/2023.02.11.528107
  3. Gomes-dos-Santos André; Lopes-Lima Manuel; Machado M. André; Teixeira Amílcar; C. Castro L. Filipe; Froufe Elsa. "PacBio Hi-Fi genome assembly of the Iberian dolphin freshwater musselUnio delphinusSpengler, 1793". 2023. https://doi.org/10.1101/2023.01.16.524251.
    10.1101/2023.01.16.524251
  4. André Gomes-dos-Santos; Nair Vilas-Arrondo; André M. Machado; Esther Román-Marcote; Jose Luís Del Río Iglesias; Francisco Baldó; Montse Pérez; et al. "Rare but not absent: the Inverted Mitogenomes of Deep-Sea Hatchetfish". 2023. https://doi.org/10.1101/2023.06.12.544378.
    10.1101/2023.06.12.544378

Other

Dataset
  1. Machado, M.M; Sarropolou. E.; C. Castro, L. Filipe; Vasconcelos, Vitor; Cunha, I.. DATASET: An important resource for understanding bio-adhesion mechanisms: Cement gland transcriptomes of two goose barnacles, Pollicipes pollicipes and Lepas anatifera (Cirripedia, Thoracica). https://figshare.com/s/0ea6cbea86bfdd39d7e7.
Other output
  1. Uncovering a 500 million year old history and evidence of pseudogenization for TLR15 (vol 13, 1020601, 2022). 2023. Neves, F; Munoz-Merida, A; Machado, AM; Almeida, T; Gaigher, A; Esteves, PJ; Castro, LFC; Verissimo, A.
    10.3389/fimmu.2023.1216338
  2. How genomics can help biodiversity conservation. 2023. Theissinger K.; Fernandes C.; Formenti G.; Bista I.; Berg P.R.; Bleidorn C.; Bombarely A.; et al.
    10.1016/j.tig.2023.01.005
  3. PacBio Hi-Fi genome assembly of the Iberian dolphin freshwater mussel Unio delphinus Spengler, 1793. 2023. Gomes-dos-Santos, A; Lopes-Lima, M; Machado, MA; Teixeira, A; Castro, LFC; Froufe, E.
    10.1038/s41597-023-02251-7
  4. Functional or vestigial? The genomics of the pineal gland in Xenarthra. 2021. Raul Valente; Filipe Alves; Isabel Sousa Pinto; Raquel Ruivo; L. Filipe C. Castro. https://doi.org/10.1101/2021.05.17.444431.
    10.1101/2021.05.17.444431
  5. A drastic shift in the energetic landscape of toothed whale sperm cells. 2021. Alves, L.Q.; Ruivo, R.; Valente, R.; Fonseca, M.M.; Machado, A.M.; Plön, S.; Monteiro, N.; et al. http://www.scopus.com/inward/record.url?eid=2-s2.0-85105608441&partnerID=MN8TOARS.
    10.1101/2021.03.01.432277
  6. A genome assembly of the Atlantic chub mackerel (Scomber colias): A valuable teleost fishing resource. 2021. Machado, A.M.; Gomes-Dos-Santos, A.; Fonseca, M.; da Fonseca, R.R.; Veríssimo, A.; Felício, M.; Capela, R.; et al. http://www.scopus.com/inward/record.url?eid=2-s2.0-85121411422&partnerID=MN8TOARS.
    10.1101/2021.11.19.468211
  7. The male and female gonad transcriptome of the edible sea urchin, Paracentrotus lividus: identification of sex-related and lipid biosynthesis genes. 2021. Machado, A.M.; Fernández-Boo, S.; Nande, M.; Pinto, R.; Costas, B.; Castro, L.F.C.. http://www.scopus.com/inward/record.url?eid=2-s2.0-85115589759&partnerID=MN8TOARS.
    10.1101/2021.08.30.458199
  8. Temporal and sex-dependent gene expression patterns in a renal ischemia-reperfusion injury and recovery pig model. 2021. Nemours, S.; Castro, L.; Ribatallada-Soriano, D.; Semidey, M.E.; Aranda, M.; Ferrer, M.; Sanchez, A.; et al. http://www.scopus.com/inward/record.url?eid=2-s2.0-85118024335&partnerID=MN8TOARS.
    10.1101/2021.09.01.458480
  9. The Crown Pearl: a draft genome assembly of the European freshwater pearl mussel Margaritifera margaritifera (Linnaeus, 1758). 2020. André Gomes-dos-Santos; Manuel Lopes-Lima; André M. Machado; António Marcos Ramos; Ana Usié; Ivan N. Bolotov; Ilya V. Vikhrev; et al. https://doi.org/10.1101/2020.12.06.413450.
    10.1101/2020.12.06.413450
  10. Differential cetacea circadian rhythmicity is associated with the molecular erosion of cortistatin. 2020. Valente, R.; Alves, L.Q.; Nabais, M.; Alves, F.; Sousa-Pinto, I.; Ruivo, R.; Castro, L.F.C.. http://www.scopus.com/inward/record.url?eid=2-s2.0-85098910863&partnerID=MN8TOARS.
    10.1101/2020.05.11.087833
  11. The dopamine receptor D5 gene shows signs of independent erosion in Toothed and Baleen whales. 2019. Luís Q. Alves; Juliana Alves; Rodrigo Ribeiro; Raquel Ruivo; L. Filipe C. Castro. https://doi.org/10.1101/556035.
    10.1101/556035
  12. Expansion, retention and loss in the Acyl-CoA Synthetase “Bubblegum” (Acsbg) gene family in vertebrate history. 2018. Mónica Lopes-Marques; André M. Machado; Raquel Ruivo; Elza Fonseca; Estela Carvalho; L. Filipe C. Castro. https://doi.org/10.1101/288530.
    10.1101/288530
  13. A taxonomically-restricted Uric Acid transporter provides insight into antioxidant equilibrium. 2018. Diogo Oliveira; André Machado; Tiago Cardoso; Mónica Lopes-Marques; L. Filipe C. Castro; Raquel Ruivo. https://doi.org/10.1101/287870.
    10.1101/287870
  14. The singularity of Cetacea behaviour parallels the complete inactivation of melatonin gene modules. 2018. Lopes-Marques, M.; Ruivo, R.; Alves, L.Q.; Sousa, N.; Machado, A.M.; Castro, L.F.. http://www.scopus.com/inward/record.url?eid=2-s2.0-85095644533&partnerID=MN8TOARS.
    10.1101/490219
Activities

Supervision

Thesis Title
Role 		Degree Subject (Type)
Institution / Organization
2019/10/01 - Current Unravelling the genomic basis of physiological diving adaptations and population structure in Cetacea
Supervisor
Universidade do Porto Centro Interdisciplinar de Investigação Marinha e Ambiental, Portugal
2018/09/12 - Current Inferring phylogeny, demography and adaptive evolution in Margaritiferidae from High-throughput Sequencing data
Co-supervisor of André Santos
Universidade do Porto Faculdade de Ciências, Portugal

Universidade do Porto Centro Interdisciplinar de Investigação Marinha e Ambiental, Portugal
2018/09/12 - Current Genetic diversity within Thymallus: from species delimitation to whole genome sequencing
Co-supervisor of Giulia Secci
Universidade do Porto Faculdade de Ciências, Portugal

Universidade do Porto Centro Interdisciplinar de Investigação Marinha e Ambiental, Portugal
2016/02/26 - Current Development of high throughput embryo bioassays as screening tools for the hazard assessment of emerging pollutants
Co-supervisor of Ricardo Capela
Universidade do Porto Faculdade de Ciências, Portugal

Universidade do Porto Centro Interdisciplinar de Investigação Marinha e Ambiental, Portugal
2015/02/05 - 2020/06/30 Nuclear Receptors in Metazoan lineages: the cross-talk between Evolution and Endocrine Disruption
Supervisor of Elza Fonseca
 Doutoramento em Biologia (PhD)
Universidade do Porto Faculdade de Ciências, Portugal

Universidade do Porto Centro Interdisciplinar de Investigação Marinha e Ambiental, Portugal
2017/09/01 - 2020/06/21 From genes to nutrition: lipid metabolism in the Brazilian teleost tambaqui (Colossoma macropomum)
Supervisor of Renato Ferraz
Universidade do Porto Instituto de Ciências Biomédicas Abel Salazar, Portugal

Universidade do Porto Centro Interdisciplinar de Investigação Marinha e Ambiental, Portugal
2018/10/15 - 2019/10/15 PseudoChecker: An integrated online platform for automated gene loss inference in mammals
Supervisor of Luís Quádrio Alves
Universidade do Porto Faculdade de Ciências, Portugal

Universidade do Porto Centro Interdisciplinar de Investigação Marinha e Ambiental, Portugal
2014/10/14 - 2018/10/14 Screening obesogens in aquatic model organisms
Supervisor of Ana Capitão
Universidade do Porto Faculdade de Ciências, Portugal

Universidade do Porto Centro Interdisciplinar de Investigação Marinha e Ambiental, Portugal
2017/09/13 - 2018/10/13 Ecotoxicology of deep sea environments.
Co-supervisor of Bárbara Marlene Teixeira Pinheiro
2016/09/07 - 2017/09/07 Obesity and environmental pollutants: a reason for concern?
Co-supervisor of Melanie Audrey Gomes Barbosa
2013/09/01 - 2017/09/04 The evolution of fatty acid metabolism in chordates
Supervisor of Mónica Marques-Lopes
Universidade do Porto Instituto de Ciências Biomédicas Abel Salazar, Portugal
2016/08/13 - 2017/08/31 Cobalamin Receptors: Transitions for Novel Functions?
Co-supervisor of Diogo Oliveira
2012/02 - 2017/02/10 The origin of the vertebrate stomach and the paradox of loss
Co-supervisor of Odete Gonçalves
 PhD (PhD)
Universidade do Porto Instituto de Ciências Biomédicas Abel Salazar, Portugal
2011/01/01 - 2016/06/23 Environmental monitoring and molecular mechanistic insights on pesticides in water and in the bivalve Scrobicularia plana, from Mondego and Tagus estuaries and Ria Formosa Lagoon.
Co-supervisor of Catarina Cruzeiro
 Doutoramento (PhD)
Universidade do Porto Instituto de Ciências Biomédicas Abel Salazar, Portugal
2011/01/01 - 2016/06/21 Impact of endocrine disrupting chemicals in nuclear receptor signaling in marine organisms: invertebrate insight
Co-supervisor of Ana André
Universidade do Porto Instituto de Ciências Biomédicas Abel Salazar, Portugal

Event organisation

Event name
Type of event (Role) 		Institution / Organization
2018/09/09 - 2018/09/12 Organizer and host of the 31st Congress of the European Comparative Physiology and Biochemistry, Porto (Portugal). (2018/09/09 - 2018/09/12)
Conference (Co-organisor)
 Universidade do Porto Centro Interdisciplinar de Investigação Marinha e Ambiental, Portugal

Event participation

Activity description
Type of event 		Event name
Institution / Organization
2020/02/16 - 2020/02/16 CONVERSAS COM CIÊNCIA | O MISTERIOSO SONO DOS GOLFINHOS: HISTÓRIAS DE EVOLUÇÃO DEBAIXO DE ÁGUA
Seminar
 CONVERSAS COM CIÊNCIA
Fundação Serralves, Portugal

Association member

Society Organization name Role
2018/08/29 - 2022/08/29 European Society of Comparative Endocrinology Council member
2018 - 2020 European Society of Comparative Physiology and Biochemistry. Co-President

Evaluation committee

Activity description
Role 		Institution / Organization Funding entity
2018/03/28 - 2018/06/30 Scientific Expert for the National Research Agency (ANR) - France, in the evaluation process of the Generic Call 2018.
Evaluator
 Agence nationale de la recherche, France Agence nationale de la recherche

Interview (newspaper / magazine)

Activity description Newspaper / Forum
2019/05/22 O que há de tão especial na pele dos golfinhos e das baleias? Público
2018/10/13 Eis (finalmente) o genoma da sardinha. E em duplicado Público
2018/05/07 Biologia - Corais, lapas e amêijoas também produzem ómega-3 Público
2013/12/25 Como se perde um estômago? Gene a gene, ao longo da evolução Público

Interview (tv / radio show)

Program Topic
2019/05/21 - 2019/05/21 Mentes que Brilham, Porto Canal Baleias e golfinhos dormem só com metade do cérebro
2018/03/27 - 2018/03/27 90 segundos de ciência Projecto CORAL desenvolve sensores para explorar o mar profundo

Journal scientific committee

Journal title (ISSN) Publisher
2019/02/01 - 2020/02/18 Comparative Biochemistry and Physiology Part C: Toxicology & Pharmacology (1532-0456) Elsevier