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Identification

Personal identification

Full name
António Eduardo Ferreira

Citation names

  • Ferreira, António
  • António E. N. Ferreira

Author identifiers

Ciência ID
9912-EFB1-7BA7
ORCID iD
0000-0002-9625-8115
Researcher Id
E-6488-2012
Scopus Author Id
8732081800
Education
Degree Classification
2018/11/06
Concluded
 Bioquímica (Título de Agregado)
Major in Bioquímica Teórica
Universidade de Lisboa Faculdade de Ciências, Portugal
 Aprovado
2002
Concluded
 Bioquímica (Doutoramento)
Major in Bioquímica Teórica
Universidade de Lisboa Faculdade de Ciências, Portugal
1989
Concluded
 Bioquímica (Licenciatura)
Major in Não Aplicável
Universidade de Lisboa Faculdade de Ciências, Portugal
Affiliation

Teaching in Higher Education

Category
Host institution 		Employer
2002/03/11 - Current Assistant Professor (University Teacher) Universidade de Lisboa Faculdade de Ciências, Portugal
Universidade de Lisboa Faculdade de Ciências, Portugal

Positions / Appointments

Category
Host institution 		Employer
2016 - 2018 Coordenação de ciclo de estudos (Mestrado em Bioquímica, FCUL) Universidade de Lisboa, Portugal
Universidade de Lisboa Faculdade de Ciências, Portugal
Projects

Grant

Designation Funders
2005/09 - 2008/06 Radiolabeling of L-Arginine Analogues with the Unit fac-[99mTc(CO)3]+ for Probing Nitric Oxide Synthase (NOS) in vivo: Synthesis, Characterization and Biological Evaluation
58855
Provided by PTCRIS: 82442
POCI/SAU-FCF/58855/2004
Universidade de Lisboa Faculdade de Ciências, Portugal
 Fundação para a Ciência e a Tecnologia
Concluded

Contract

Designation Funders
2019/01/01 - Current Bridging Ethnic Food Cultures through Chemistry
IUPAC 2017-037-2-300
Researcher
Universidade de Lisboa Faculdade de Ciências, Portugal
 International Union of Pure and Applied Chemistry
Ongoing
2018/10 - Current European Network of Fourier-Transform Ion-Cyclotron-Resonance Mass Spectrometry Centers
731077
Researcher
Universidade de Lisboa Faculdade de Ciências, Portugal
 EU Framework Programme for Research and Innovation Euratom
Ongoing
2022/01/01 - 2023/06/30 Wine yeasts typing: discrimination of non-conventional wine yeasts through untargeted chemical fingerprinting
EXPL/BTA-BTA/1389/2021
Centro de Ciências do Mar e do Ambiente, Portugal

FCiênciasID Associação para a Investigação e Desenvolvimento de Ciências, Portugal
Fundação para a Ciência e a Tecnologia
Ongoing
2022/07 - 2023/02 Methods for data augmentation in FT-ICR-MS untargeted metabolomics
CPCA/A0/467905/2021
 Fundação para a Ciência e a Tecnologia

Rede Nacional de Computação Avançada
Concluded
2018/10/01 - 2021/09/30 Marcadores de resistência em Videira: correlacionando alterações no metaboloma com a resistência ao míldeo
PTDC/BAA-MOL/28675/2017
Researcher
Instituto Nacional de Investigação Agrária e Veterinária, Portugal

Universidade de Lisboa Faculdade de Ciências, Portugal
Fundação para a Ciência e a Tecnologia
Ongoing
2013/07/01 - 2017/03/31 A arquitectura da vida: A estrutura quaternária de cápsulas virais por espectrometria de massa nativa
RECI/BBB-BEP/0104/2012
Researcher
Fundação da Faculdade de Ciências da Universidade de Lisboa, Portugal

Universidade de Lisboa Centro de Química e Bioquímica, Portugal

Instituto de Biologia Experimental e Tecnológica, Portugal
Fundação para a Ciência e a Tecnologia
Concluded
2014 - 2016 Healthy life and active ageing – the contribute of functional food ingredients
IUPAC 2013-054-2-300
Researcher
Universidade de Lisboa Faculdade de Ciências, Portugal
 International Union of Pure and Applied Chemistry
Concluded
2013 - 2016 PERSSILAA - PERsonalised ICT Supported Service for Independent Living and Active Ageing
FP7-ICT-2013-10, Project nr. 610359
Researcher
Universidade de Lisboa Faculdade de Ciências, Portugal
 European Commission Seventh Framework Programme for Research and Technological Development
2011/04/01 - 2014/12/31 Proteómica de vias em Leishmania: Mapeando o proteoma funcional visando a identificação de novas oportunidades terapêuticas
PTDC/SAU-MIC/115178/2009
Researcher
Fundação da Faculdade de Ciências da Universidade de Lisboa, Portugal

Universidade de Lisboa Centro de Química e Bioquímica, Portugal
Fundação para a Ciência e a Tecnologia
Concluded
2010/01/01 - 2013/06/30 Circuitos metabolicos envolvidos na morte celular bacteriana
PTDC/BIA-MIC/101375/2008
Researcher
Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal

Fundação da Faculdade de Ciências da Universidade de Lisboa, Portugal
Fundação para a Ciência e a Tecnologia
Concluded
2011/01/01 - 2012/12/31 Strategic Project - UI 612 - 2011-2012
PEst-OE/QUI/UI0612/2011
Fundação da Faculdade de Ciências da Universidade de Lisboa, Portugal
 Fundação para a Ciência e a Tecnologia
Concluded
2008/01/02 - 2011/12/31 Protein glycation and transthyretin amyloidogenesis in yeast: A model system of neurodegenerative amyloid diseases
PTDC/QUI/70610/2006
70610
Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica António Xavier, Portugal

Fundação da Faculdade de Ciências da Universidade de Lisboa, Portugal

Egas Moniz - Cooperativa de Ensino Superior Crl, Portugal

Universidade de Lisboa Centro de Química e Bioquímica, Portugal
Fundação para a Ciência e a Tecnologia
Concluded
2008/01/01 - 2011/12/31 Reconstrução e análise sistémica da rede reaccional de espécies reactivas de oxigénio, azoto e enxofre em sistemas fisiológicos representativos
PTDC/QUI/70523/2006
Researcher
Universidade de Coimbra Centro de Neurociências e Biologia Celular, Portugal

Fundação da Faculdade de Ciências da Universidade de Lisboa, Portugal
Fundação para a Ciência e a Tecnologia
Concluded
2005/10/01 - 2007/06/30 Metabolismo do ovotiol em Leishmania: Identificação de novos alvos terapêuticos
POCI/QUI/62027/2004
Principal investigator
Fundação da Faculdade de Ciências da Universidade de Lisboa, Portugal

Universidade de Lisboa Centro de Química e Bioquímica, Portugal
Fundação para a Ciência e a Tecnologia
Concluded
Outputs

Publications

Book chapter
  1. Ferreira, António E.N.; Sousa Silva, Marta; Cordeiro, Carlos. "Metabolic Network Inference From Time Series". In Reference Module in Biomedical Sciences. Elsevier, 2019.
    Published • 10.1016/b978-0-12-801238-3.11347-9
  2. O’Caoimh, R.; Molloy, D.W.; Fitzgerald, C.; Van Velsen, L.; Cabrita, M.; Nassabi, M.H.; de Vette, F.; et al. "ICT-supported interventions targeting pre-frailty: Healthcare recommendations from the personalised ICT supported service for independent living and active ageing (PERSSILAA) study". 2018.
    10.1007/978-3-319-93644-4_4
  3. Piedade, C.A.; Sousa Silva, M.; Cordeiro, C.; Ferreira, A.E.N.. "Virus disassembly pathways predicted from geometry and configuration energy". 2018.
    10.1007/978-3-319-94806-5_16
Conference paper
  1. Piedade, C.A.; Ferreira, A.E.N.; Cordeiro, C.. "How to disassemble a virus capsid a computational approach". 2017.
  2. O'Caoimh, R.; Molloy, D.W.; Fitzgerald, C.; Van Velsen, L.; Cabrita, M.; Nassabi, M.H.; De Vette, F.; et al. "Healthcare recommendations from the personalised ict supported service for independent living and active ageing (PERSSILAA) study". 2017.
  3. Falcao, A.O.; Faria, D.; Ferreira, A.. "Peptide programs: Applying fragment programs to protein classification". 2008.
    10.1145/1458449.1458459
Conference poster
  1. Luz, João; Traquete, Francisco; Ferreira, António; Sousa Silva, Marta; Cordeiro, Carlos. "Towards a score-based metabolite identification algorithm for extreme resolution mass spectrometry". Paper presented in 3rd Chem&Biochem Students Meeting, 2023.
  2. Traquete, Francisco; Sousa Silva, Marta; Ferreira, António. "Addressing Metabolomics Data Analysis Challenges: GAN-based approach for metabolomics data augmentation to counteract low sample number, friend or foe?". Paper presented in Metabolomics 2023 (19th International Conference of the Metabolomics Society), 2023.
  3. Traquete, Francisco; Luz, João; Cordeiro, Carlos; Sousa Silva, Marta; Ferreira, António. "Spectral feature occurrence as a viable alternative to intensity-based data for profiling and discrimination in untargeted metabolomics". Paper presented in 2nd Chem & BiochemStudents Meeting, 2022.
  4. Luz, João; Pendão, Ana Sofia; Traquete, Francisco; Ferreira, António; Sousa Silva, Marta; Cordeiro, Carlos. "A metabolomics approach to the study of the effects of single-gene deletions in yeast". Paper presented in 2nd Chem & BiochemStudents Meeting, 2022.
  5. Osawa, Rodrigo; Louro, Mariana; Soeiro, Mónica; Luz, João; Traquete, Francisco; Marques, Ana; Ferreira, António; Sousa Silva, Marta; Cordeiro, Carlos. "From Grapevine to the dinning table: unprecedented approach using FT-ICR-MS". Paper presented in 14th European Fourier Transform Mass Spectrometry Workshop & 3rd EFTMS School, 2022.
  6. Luz, João; Pendão, Ana Sofia; Traquete, Francisco; Ferreira, António; Sousa Silva, Marta; Cordeiro, Carlos. "FT-ICR-MS uncovers large-scale metabolic differences between phenotypically identical yeasts". Paper presented in 14th European Fourier Transform Mass Spectrometry Workshop & 3rd EFTMS School, 2022.
  7. Traquete, Francisco; Luz, João; Cordeiro, Carlos; Sousa Silva, Marta; Ferreira, António. "Using Graph Properties of Mass-Difference Networks for Profiling and Discrimination in Untargeted Metabolomics". Paper presented in 14th European Fourier Transform Mass Spectrometry Workshop & 3rd EFTMS School, 2022.
  8. Traquete, Francisco; Luz, João; Cordeiro, Carlos; Sousa Silva, Marta; Ferreira, António. "Spectral feature occurrence as a complementary approach to intensity-based data for profiling and discrimination in untargeted metabolomics". Paper presented in Metabolomics 2022 (18th International Conference of the Metabolomics Society), 2022.
  9. Luz, João; Pendão, Ana Sofia; Traquete, Francisco; Ferreira, António; Sousa Silva, Marta; Cordeiro, Carlos. "Metabolomic effects of single-gene deletions in Saccharomyces cerevisae". Paper presented in X-Omics Festival 2021, 2021.
  10. Traquete, Francisco; Luz, João; Cordeiro, Carlos; Sousa Silva, Marta; Ferreira, António. "Binary Similarity Measures as an Effective Tool in Metabolomics Data Analysis". Paper presented in X-Omics Festival 2021, 2021.
  11. Maia, Marisa; Höfle, Rebecca; Cavaco AR; Laureano, Gonçalo; Figueiredo, J.; Ferreira, António; Cordeiro, Carlos; et al. "Grapevine resistance to Plasmopara viticola: the search for metabolic biomarkers". Paper presented in XII International conference on grapevine breeding and genetics, 2018.
Journal article
  1. Nogues, Isabel; Passatore, Laura; Bustamante, María Ángeles; Pallozzi, Emanuele; Luz, João; Traquete, Francisco; Ferreira, António; Sousa Silva, Marta; Cordeiro, Carlos. Corresponding author: Sousa Silva, Marta. "Cultivation of Melilotus officinalis as a source of bioactive compounds in association with soil recovery practices". Frontiers in Plant Science 14 (2023):
    Published
  2. Traquete, Francisco; Luz, João; Cordeiro, Carlos; Sousa Silva, Marta; Ferreira, António. "Graph Properties of Mass-Difference Networks for Profiling and Discrimination in Untargeted Metabolomics". Frontiers in Molecular Biosciences 9 (2022): http://dx.doi.org/10.3389/fmolb.2022.917911.
    Published • 10.3389/fmolb.2022.917911
  3. Francisco Traquete; João Luz; Carlos Cordeiro; Marta Sousa Silva; António E. N. Ferreira. "Binary Simplification as an Effective Tool in Metabolomics Data Analysis". Metabolites (2021): https://www.mdpi.com/2218-1989/11/11/788.
    10.3390/metabo11110788
  4. "Metabolomics and transcriptomics to decipher molecular mechanisms underlying ectomycorrhizal root colonization of an oak tree". Scientific Reports 11 1 (2021): http://dx.doi.org/10.1038/s41598-021-87886-5.
    10.1038/s41598-021-87886-5
  5. Cristóvão JS; Moreira GG; Rodrigues FEP; Carapeto AP; Rodrigues MS; Cardoso I; Ferreira AEN; et al. "Cu2+-binding to S100B triggers polymerization of disulfide cross-linked tetramers with enhanced chaperone activity against amyloid-ß aggregation.". Chemical communications (Cambridge, England) (2021): http://europepmc.org/abstract/med/33326534.
    10.1039/d0cc06842j
  6. Marisa Maia; António E.N. Ferreira; Jorge Cunha; José Eiras-Dias; Carlos Cordeiro; Andreia Figueiredo; Marta Sousa Silva. "Comparison of the chemical diversity of Vitis rotundifolia and Vitis vinifera cv. ‘Cabernet Sauvignon’". Ciência e Técnica Vitivinícola 36 1 (2021): 1-8. https://doi.org/10.1051%2Fctv%2F20213601001.
    10.1051/ctv/20213601001
  7. Maia M; Ferreira AEN; Nascimento R; Monteiro F; Traquete F; Marques AP; Cunha J; et al. "Integrating metabolomics and targeted gene expression to uncover potential biomarkers of fungal/oomycetes-associated disease susceptibility in grapevine.". Scientific reports (2020): http://europepmc.org/abstract/med/32973337.
    10.1038/s41598-020-72781-2
  8. Maia, M.; Maccelli, A.; Nascimento, R.; Ferreira, A.E.N.; Crestoni, M.E.; Cordeiro, C.; Figueiredo, A.; Sousa Silva, M.. "Early detection of Plasmopara viticola-infected leaves through FT-ICR-MS metabolic profiling". Acta Horticulturae 1248 (2019): 575-580. http://dx.doi.org/10.17660/actahortic.2019.1248.77.
    Published • 10.17660/actahortic.2019.1248.77
  9. Nascimento, Rui; Maia, Marisa; Ferreira, António E.N.; Silva, Anabela B.; Freire, Ana Ponces; Cordeiro, Carlos; Silva, Marta Sousa; Figueiredo, Andreia. "Early stage metabolic events associated with the establishment of Vitis vinifera – Plasmopara viticola compatible interaction". Plant Physiology and Biochemistry 137 (2019): 1-13. http://dx.doi.org/10.1016/j.plaphy.2019.01.026.
    Published • 10.1016/j.plaphy.2019.01.026
  10. Maia, Marisa; Ferreira, António E. N.; Laureano, Gonçalo; Marques, Ana Patrícia; Torres, Vukosava M.; Silva, Anabela Bernardes; Matos, Ana Rita; et al. "Vitis vinifera ‘Pinot noir’ leaves as a source of bioactive nutraceutical compounds". Food & Function 10 7 (2019): 3822-3827. http://dx.doi.org/10.1039/c8fo02328j.
    Open access • Published • 10.1039/c8fo02328j
  11. Maia, Marisa; Höfle, Rebecca; Cavaco, Ana R.; Ferreira, António; Cordeiro, Carlos; Töpfer, Reinhard; Kicherer, Anna; Figueiredo, Andreia; Silva, Marta Sousa. "Combining metabolomics and phenotyping to discover biomarkers of resistance to downy mildew". Free Radical Biology and Medicine 120 (2018): S131-S132. http://dx.doi.org/10.1016/j.freeradbiomed.2018.04.433.
    Published • 10.1016/j.freeradbiomed.2018.04.433
  12. Maia, M.; Monteiro, F.; Sebastiana, M.; Marques, A.P.; Ferreira, A.E.N.; Freire, A.P.; Cordeiro, C.; Figueiredo, A.; Sousa Silva, M.. "Metabolite extraction for high-throughput FTICR-MS-based metabolomics of grapevine leaves". EuPA Open Proteomics 12 (2016): 4-9. http://www.scopus.com/inward/record.url?eid=2-s2.0-84961938175&partnerID=MN8TOARS.
    10.1016/j.euprot.2016.03.002
  13. Marques, A.P.; Serralheiro, M.L.; Ferreira, A.E.N.; Freire, A.P.; Cordeiro, C.; Silva, M.S.. "Metabolomics for undergraduates: Identification and pathway assignment of mitochondrial metabolites". Biochemistry and Molecular Biology Education 44 1 (2016): 38-54. http://www.scopus.com/inward/record.url?eid=2-s2.0-84961329285&partnerID=MN8TOARS.
    10.1002/bmb.20919
  14. Da Costa, G.; Ribeiro-Silva, C.; Ribeiro, R.; Gilberto, S.; Gomes, R.A.; Ferreira, A.; Mateus, É.; et al. "Transthyretin amyloidosis: Chaperone concentration changes and increased proteolysis in the pathway to disease". PLoS ONE 10 7 (2015): http://www.scopus.com/inward/record.url?eid=2-s2.0-84940197572&partnerID=MN8TOARS.
    10.1371/journal.pone.0125392
  15. Sousa Silva, M.; Gomes, R.A.; Ferreira, A.E.N.; Ponces Freire, A.; Cordeiro, C.. "The glyoxalase pathway: The first hundred years... and beyond". Biochemical Journal 453 1 (2013): 1-15. http://www.scopus.com/inward/record.url?eid=2-s2.0-84879026126&partnerID=MN8TOARS.
    10.1042/BJ20121743
  16. Silva, M.S.; Ferreira, A.E.N.; Gomes, R.; Tomás, A.M.; Freire, A.P.; Cordeiro, C.. "Glyoxalase Enzymes in Trypanosomatids". Trypanosomatid Diseases: Molecular Routes to Drug Discovery (2013): 153-166. http://www.scopus.com/inward/record.url?eid=2-s2.0-84879020447&partnerID=MN8TOARS.
    10.1002/9783527670383.ch8
  17. Rivaldi, J.D.; Silva, M.S.; Duarte, L.C.; Ferreira, A.E.N.; Cordeiro, C.; De Almeida Felipe, M.D.G.; Ponces Freire, A.; De Mancilha, I.M.. "Erratum: Metabolism of biodiesel-derived glycerol in probiotic Lactobacillus strains (Applied Microbiology and Biotechnology (2013) DOI: 10.1007/s00253-012-4621-z)". Applied Microbiology and Biotechnology 97 4 (2013): http://www.scopus.com/inward/record.url?eid=2-s2.0-84874367232&partnerID=MN8TOARS.
    10.1007/s00253-012-4661-4
  18. Rivaldi, J.D.; Sousa Silva, M.L.C.; Duarte, L.C.; Ferreira, A.E.N.; Cordeiro, C.; De Almeida Felipe, M.D.G.; De Ponces Freire, A.; De Mancilha, I.M.. "Metabolism of biodiesel-derived glycerol in probiotic Lactobacillus strains". Applied Microbiology and Biotechnology 97 4 (2013): 1735-1743. http://www.scopus.com/inward/record.url?eid=2-s2.0-84874358825&partnerID=MN8TOARS.
    10.1007/s00253-012-4621-z
  19. Sousa Silva, M.; Ferreira, A.E.N.; Gomes, R.; Tomás, A.M.; Ponces Freire, A.; Cordeiro, C.. "The glyoxalase pathway in protozoan parasites". International Journal of Medical Microbiology 302 4-5 (2012): 225-229. http://www.scopus.com/inward/record.url?eid=2-s2.0-84866632897&partnerID=MN8TOARS.
    10.1016/j.ijmm.2012.07.005
  20. Faria, D.; Schlicker, A.; Pesquita, C.; Bastos, H.; FerreiraAntó, A.E.N.; Albrecht, M.; Falcão, A.O.. "Mining GO annotations for improving annotation consistency". PLoS ONE 7 7 (2012): http://www.scopus.com/inward/record.url?eid=2-s2.0-84864674779&partnerID=MN8TOARS.
    10.1371/journal.pone.0040519
  21. Lages, N.F.; Cordeiro, C.; Sousa Silva, M.; Ponces Freire, A.; Ferreira, A.E.N.. "Optimization of time-course experiments for kinetic model discrimination". PLoS ONE 7 3 (2012): http://www.scopus.com/inward/record.url?eid=2-s2.0-84857723721&partnerID=MN8TOARS.
    10.1371/journal.pone.0032749
  22. Oliveira, B.L.; Raposinho, P.D.; Mendes, F.; Santos, I.C.; Santoes, I.; Ferreira, A.; Cordeiro, C.; Freire, A.P.; Correia, J.D.G.. "Targeting nitric oxide synthase with99mTc/Re-tricarbonyl complexes containing pendant guanidino or isothiourea moieties". Journal of Organometallic Chemistry 696 5 (2011): 1057-1065. http://www.scopus.com/inward/record.url?eid=2-s2.0-79952194212&partnerID=MN8TOARS.
    10.1016/j.jorganchem.2010.09.019
  23. Barata, L.; Sousa Silva, M.; Schuldt, L.; Ferreira, A.E.N.; Gomes, R.A.; Tomás, A.M.; Weiss, M.S.; Ponces Freire, A.; Cordeiro, C.. "Enlightening the molecular basis of trypanothione specificity in trypanosomatids: Mutagenesis of Leishmania infantum glyoxalase II". Experimental Parasitology 129 4 (2011): 402-408. http://www.scopus.com/inward/record.url?eid=2-s2.0-80455122647&partnerID=MN8TOARS.
    10.1016/j.exppara.2011.08.008
  24. Barata, L.; Sousa Silva, M.; Schuldt, L.; Da Costa, G.; Tomás, A.M.; Ferreira, A.E.N.; Weiss, M.S.; Ponces Freire, A.; Cordeiro, C.. "Cloning, expression, purification, crystallization and preliminary X-ray diffraction analysis of glyoxalase i from Leishmania infantum". Acta Crystallographica Section F: Structural Biology and Crystallization Communications 66 5 (2010): 571-574. http://www.scopus.com/inward/record.url?eid=2-s2.0-77951993959&partnerID=MN8TOARS.
    10.1107/S1744309110010754
  25. Faria, D.; Ferreira, A.E.N.; Falcão, A.O.. "Enzyme classification with peptide programs: A comparative study". BMC Bioinformatics 10 (2009): http://www.scopus.com/inward/record.url?eid=2-s2.0-68949098339&partnerID=MN8TOARS.
    10.1186/1471-2105-10-231
  26. Oliveira, B.L.; Correia, J.D.G.; Raposinho, P.D.; Santos, I.; Ferreira, A.; Cordeiro, C.; Freire, A.P.. "Re and99mTc organometallic complexes containing pendant l-arginine derivatives as potential probes of inducible nitric oxide synthase". Dalton Transactions 1 (2009): 152-162. http://www.scopus.com/inward/record.url?eid=2-s2.0-57649133265&partnerID=MN8TOARS.
    10.1039/b805986a
  27. Gomes, R.A.; Miranda, H.V.; Sousa Silva, M.; Graça, G.; Coelho, A.V.; Do Nascimento Ferreira, A.E.; Cordeiro, C.; Freire, A.P.. "Protein glycation and methylglyoxal metabolism in yeast: Finding peptide needles in protein haystacks". FEMS Yeast Research 8 1 (2008): 174-181. http://www.scopus.com/inward/record.url?eid=2-s2.0-38349156416&partnerID=MN8TOARS.
    10.1111/j.1567-1364.2007.00337.x
  28. Silva, M.S.; Barata, L.; Ferreira, A.E.N.; Romão, S.; Tomás, A.M.; Freire, A.P.; Cordeiro, C.. "Catalysis and structural properties of Leishmania infantum glyoxalase II: Trypanothione specificity and phylogeny". Biochemistry 47 1 (2008): 195-204. http://www.scopus.com/inward/record.url?eid=2-s2.0-37849007277&partnerID=MN8TOARS.
    10.1021/bi700989m
  29. Gomes, R.A.; Oliveira, L.M.A.; Silva, M.; Ascenso, C.; Quintas, A.; Costa, G.; Coelho, A.V.; et al. "Protein glycation in vivo: Functional and structural effects on yeast enolase". Biochemical Journal 416 3 (2008): 317-325. http://www.scopus.com/inward/record.url?eid=2-s2.0-58949095221&partnerID=MN8TOARS.
    10.1042/BJ20080632
  30. Pesquita, C.; Faria, D.; Bastos, H.; Ferreira, A.E.N.; Falcão, A.O.; Couto, F.M.. "Metrics for GO based protein semantic similarity: A systematic evaluation". BMC Bioinformatics 9 SUPPL. 5 (2008): http://www.scopus.com/inward/record.url?eid=2-s2.0-47149083877&partnerID=MN8TOARS.
    10.1186/1471-2105-9-S5-S4
  31. Miranda, H.V.; Ferreira, A.E.N.; Quintas, A.; Cordeiro, C.; Freire, A.P.. "Measuring intracellular enzyme concentrations assessing the effect of oxidative stress on the amount of glyoxalase I". Biochemistry and Molecular Biology Education 36 2 (2008): 135-138. http://www.scopus.com/inward/record.url?eid=2-s2.0-41549151617&partnerID=MN8TOARS.
    10.1002/bmb.20166
  32. Miranda, H.V.; Ferreira, A.E.N.; Cordeiro, C.; Freire, A.P.. "Kinetic assay for measurement of enzyme concentration in situ". Analytical Biochemistry 354 1 (2006): 148-150. http://www.scopus.com/inward/record.url?eid=2-s2.0-33744530258&partnerID=MN8TOARS.
    10.1016/j.ab.2005.09.002
  33. Gomes, R.A.; Miranda, H.V.; Silva, M.S.; Graça, G.; Coelho, A.V.; Ferreira, A.E.; Cordeiro, C.; Freire, A.P.. "Yeast protein glycation in vivo by methylglyoxal: Molecular modification of glycolytic enzymes and heat shock proteins". FEBS Journal 273 23 (2006): 5273-5287. http://www.scopus.com/inward/record.url?eid=2-s2.0-33751095900&partnerID=MN8TOARS.
    10.1111/j.1742-4658.2006.05520.x
  34. Barata, L.; Sousa Silva, M.; Trincão, J.; Carvalho, S.; Ferreira, A.E.N.; Bonifácio, C.; Cordeiro, C.; et al. "Purification, crystallization and preliminary X-ray diffraction analysis of the glyoxalase II from Leishmania infantum". Acta Crystallographica Section F: Structural Biology and Crystallization Communications 62 8 (2006): 805-807. http://www.scopus.com/inward/record.url?eid=2-s2.0-33747177058&partnerID=MN8TOARS.
    10.1107/S1744309106027539
  35. Gomes, R.A.; Silva, M.S.; Miranda, H.V.; Ferreira, A.E.N.; Cordeiro, C.A.A.; Freire, A.P.. "Protein glycation in Saccharomyces cerevisiae: Argpyrimidine formation and methylglyoxal catabolism". FEBS Journal 272 17 (2005): 4521-4531. http://www.scopus.com/inward/record.url?eid=2-s2.0-24644494767&partnerID=MN8TOARS.
    10.1111/j.1742-4658.2005.04872.x
  36. Sousa Silva, M.; Ferreira, A.E.N.; Tomás, A.M.; Cordeiro, C.; Freire, A.P.. "Erratum: Quantitative assessment of the glyoxalase pathway in Leishmania infantum as a therapeutic target by modelling and computer simulation (FEBS Journal (2005) 272 (2388-2398))". FEBS Journal 272 12 (2005): http://www.scopus.com/inward/record.url?eid=2-s2.0-21344470127&partnerID=MN8TOARS.
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Magazine article
  1. Ferreira, António. "Uncovering markers for mildew resistance in grapevine through mass spectrometry-based metabolomics", Revista de Ciências Agrárias, 2018, http://www.scielo.mec.pt/pdf/rca/v41nspe/v41nspea08.pdf.
    10.19084/RCA17334
Preprint
  1. Isabel Nogues; Laura Passatore; María Ángeles Bustamante; Emanuele Pallozzi; João Luz; Francisco Traquete; António E.N. Ferreira; Marta Sousa Silva; Carlos Cordeiro. "Cultivation ofMelilotus officinalisas a source of bioactive compounds in association with soil recovery practices". 2023. https://doi.org/10.1101/2023.04.24.538143.
    10.1101/2023.04.24.538143
Report
  1. Rauter, Amélia P.; Silva, Marta; Ferreira, António; Martins, Alice; Turkman, Feridun; Turkman, Antónia; Antunes, Marília; et al. 2015. PERSILAA D6.5.2 - Workshop organized by FFCUL at the moment the website will be launched. http://perssilaa.rrdweb.nl/.
  2. Rauter, Amélia P.; Silva, Marta; Ferreira, António; Martins, Alice; Turkman, Feridun; Turkman, Maria Antónia; Antunes, Marília; et al. 2015. PERSSILAA D3.3 - Package of remotely available services for health promotion and supervised training. http://perssilaa.rrdweb.nl/.
  3. Rauter, Amélia P.; Turkman, Maria Antónia; Turkman, Feridun; Antunes, Marília; Silva, Marta Sousa; Ferreira, António; Martins, Alice; et al. 2015. PERSSILAA D3.1 - Screening methods and anticipatory triage protocol. http://perssilaa.rrdweb.nl/.
  4. Hermens, Hermie; Vollenbroek-Hutten, Miriam; Nassabi, Mohammad Hossein; Rauter, Amélia P.; Turkman, Antónia; Turkman, Feridun; Antunes, Marília; et al. 2014. PERSSILAA D6.2 - Dissemination Plan. http://perssilaa.rrdweb.nl/.
Activities

Supervision

Thesis Title
Role 		Degree Subject (Type)
Institution / Organization
2019/09/01 - 2021/01/25 Binary Similarity Measures and Mass-Difference Network Analysis as Effective Tools in Metabolomics Data Analysis.
Supervisor of Francisco Maria Reis Ventura Rosado Traquete
 Mestrado em Bioquímica (Master)
Universidade de Lisboa Faculdade de Ciências, Portugal
2016 - 2016 "How to disassemble a Virus Capsid: a computational approach"
Supervisor
 Bioquímica (Master)
Universidade de Lisboa Faculdade de Ciências, Portugal
2015 - 2015 Role of transcription factors in the functional development of gamma-delta T lymphocytes
Co-supervisor
 Bioquímica (Master)
Universidade de Lisboa Faculdade de Ciências, Portugal
2015 - 2015 An innovative strategy for therapeutic angiogenesis: low doses of ionizing radiation
Co-supervisor
 Bioquímica (Master)
Universidade de Lisboa Faculdade de Ciências, Portugal
2013 - 2013 CG9925 and CG9684 are homologues of the TDRD1 piRNA protein family and occupy different subcellular compartments in the Drosophila germline
Co-supervisor
 Bioquímica (Master)
Universidade de Lisboa Faculdade de Ciências, Portugal
2007 - 2007 Antioxidante com Estrutura Catecólica: Matabolismo e Relações Estrutura - Actividade
Supervisor
 Bioquímica (PhD)
Universidade de Lisboa, Portugal
2007 - 2007 Automated Knowledge Extraction From Protein Sequence
Co-supervisor
 Informática (PhD)
Universidade de Lisboa, Portugal
2006 - 2006 Profiling, Modelação e Engenharia do Metabolismo de Aminoácidos em Saccharomyces Cerevisae
Supervisor
 Bioquímica (PhD)
Universidade de Lisboa, Portugal