Journal article |
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"The latent reservoir of inducible, infectious HIV-1 does not decrease despite decades of antiretroviral therapy". Journal
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10.1016/j.repc.2020.07.014
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of inoculum dose, the innate immune response and viral interference". PLOS Computational Biology (2021): https://doi.org/10.1371/journal.pcbi.1008564.
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10.1016/j.radonc.2020.06.038
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Pulmonary Rehabilitation: Telemonitoring Physical Activity as a Vital Sign-SMARTREAB Study.". Journal of clinical medicine
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Preconditions on COVID-19 Deaths in Portugal: Evidence from Surveillance Data of the First 20293 Infection Cases.". Journal
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- da Costa PM; Lages P; Onofre S; Ribeiro RM. "The impact of negative lymph nodes in the survival outcomes of pN+ patients following
radical gastrectomy: the inverse lymph node ratio as a better score to study negative lymph nodes.". Updates in surgery
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Drugs in the School Population of Sao Tome and Principe". Acta Médica Portuguesa (2020): https://doi.org/10.20344/amp.11876.
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T Cell Subtypes With TSDR Strand-Bias Methylation.". Frontiers in immunology (2018): http://europepmc.org/abstract/med/30455694.
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Virus Transmission and Early Diversification". JOURNAL OF VIROLOGY (2016): www.orcid.org.
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SIV-Infected Pigtailed Macaques". PLOS PATHOGENS (2016): www.orcid.org.
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Hepatocytes". PLOS COMPUTATIONAL BIOLOGY (2014): www.orcid.org.
10.1371/journal.pcbi.1003934
- Ribeiro, Ruy M.. "Human systems immunology Hypothesis-based modeling and unbiased data-driven approaches". SEMINARS IN
IMMUNOLOGY (2013): www.orcid.org.
10.1016/j.smim.2012.11.003
- Ribeiro, Ruy M.. "Modeling the within-host dynamics of HIV infection". BMC BIOLOGY (2013): www.orcid.org.
10.1186/1741-7007-11-96
- Ribeiro, Ruy M.. "Kinetics of Coinfection with Influenza A Virus and Streptococcus pneumoniae". PLOS PATHOGENS (2013):
www.orcid.org.
10.1371/journal.ppat.1003238
- Ribeiro, Ruy M.. "Kinetics of Myeloid Dendritic Cell Trafficking and Activation Impact on Progressive, Nonprogressive and
Controlled SIV Infections". PLOS PATHOGENS (2013): www.orcid.org.
10.1371/journal.ppat.1003600
- Ribeiro, Ruy M.. "Use of Laser Capture Microdissection to Map Hepatitis C Virus-Positive Hepatocytes in Human Liver". GASTROENTEROLOGY
(2013): www.orcid.org.
10.1053/j.gastro.2013.08.034
- Ribeiro, Ruy M.. "The fate of CD4(+) T cells under tolerance-inducing stimulation a modeling perspective". IMMUNOLOGY
AND CELL BIOLOGY (2013): www.orcid.org.
10.1038/icb.2013.63
- Caridade, M.; Graca, L.; Ribeiro, R.M.. "Mechanisms underlying CD4+ Treg immune regulation in the adult: From experiments
to models". Frontiers in Immunology 4 NOV (2013): http://www.scopus.com/inward/record.url?eid=2-s2.0-84890360171&partnerID=MN8TOARS.
10.3389/fimmu.2013.00378
- Ribeiro, Ruy M.. "Modeling Quasispecies and Drug Resistance in Hepatitis C Patients Treated with a Protease Inhibitor". BULLETIN
OF MATHEMATICAL BIOLOGY (2012): www.orcid.org.
10.1007/s11538-012-9736-y
- Ribeiro, Ruy M.. "Agent-based and phylogenetic analyses reveal how HIV-1 moves between risk groups Injecting drug users sustain
the heterosexual epidemic in Latvia". EPIDEMICS (2012): www.orcid.org.
10.1016/j.epidem.2012.04.002
- Ribeiro, Ruy M.. "Quantifying the activity of anti-HIV treatment in silico". NATURE MEDICINE (2012): www.orcid.org.
10.1038/nm.2698
- Ribeiro, Ruy M.. "Coagulation biomarkers predict disease progression in SIV-infected nonhuman primates". BLOOD (2012):
www.orcid.org.
10.1182/blood-2012-03-414706
- Ribeiro, Ruy M.. "Quantifying the Diversification of Hepatitis C Virus (HCV) during Primary Infection Estimates of the In
Vivo Mutation Rate". PLOS PATHOGENS (2012): www.orcid.org.
10.1371/journal.ppat.1002881
- Ribeiro, Ruy M.. "Elucidation of Hepatitis C Virus Transmission and Early Diversification by Single Genome Sequencing". PLOS
PATHOGENS (2012): www.orcid.org.
10.1371/journal.ppat.1002880
- Ribeiro, Ruy M.. "Modelling deuterium labelling of lymphocytes with temporal and/or kinetic heterogeneity". JOURNAL OF
THE ROYAL SOCIETY INTERFACE (2012): www.orcid.org.
10.1098/rsif.2012.0149
- Ribeiro, Ruy M.. "Effect of 1918 PB1-F2 Expression on Influenza A Virus Infection Kinetics". PLOS COMPUTATIONAL BIOLOGY
(2011): www.orcid.org.
10.1371/journal.pcbi.1001081
- Ribeiro, Ruy M.. "Immunovirological Analyses of Chronically Simian Immunodeficiency Virus SIVmnd-1-and SIVmnd-2-Infected Mandrills
(Mandrillus sphinx)". JOURNAL OF VIROLOGY (2011): www.orcid.org.
10.1128/JVI.05693-11
- Ribeiro, Ruy M.. "Functional Cure of SIVagm Infection in Rhesus Macaques Results in Complete Recovery of CD4(+) T Cells and
Is Reverted by CD8(+) Cell Depletion". PLOS PATHOGENS (2011): www.orcid.org.
10.1371/journal.ppat.1002170
- Ribeiro, Ruy M.. "Evolution of Drug-Resistant Viral Populations during Interruption of Antiretroviral Therapy". JOURNAL
OF VIROLOGY (2011): www.orcid.org.
10.1128/JVI.02389-10
- Ribeiro, Ruy M.. "CD8+Lymphocytes Control Viral Replication in SIVmac239-Infected Rhesus Macaques without Decreasing the Lifespan
of Productively Infected Cells". PLOS PATHOGENS (2010): www.orcid.org.
10.1371/journal.ppat.1000747
- Ribeiro, Ruy M.. "Response network analysis of differential gene expression in human epithelial lung cells during avian influenza
infections". BMC BIOINFORMATICS (2010): www.orcid.org.
10.1186/1471-2105-11-170
- Ribeiro, Ruy M.. "Estimation of the Initial Viral Growth Rate and Basic Reproductive Number during Acute HIV-1 Infection".
JOURNAL OF VIROLOGY (2010): www.orcid.org.
10.1128/JVI.00127-10
- Ribeiro, Ruy M.. "Rapid Emergence of Protease Inhibitor Resistance in Hepatitis C Virus". SCIENCE TRANSLATIONAL MEDICINE
(2010): www.orcid.org.
10.1126/scitranslmed.3000544
- Ribeiro, Ruy M.. "Viral Dynamics during Primary Simian Immunodeficiency Virus Infection Effect of Time-Dependent Virus Infectivity".
JOURNAL OF VIROLOGY (2010): www.orcid.org.
10.1128/JVI.02284-09
- Ribeiro, Ruy M.. "Current Estimates for HIV-1 Production Imply Rapid Viral Clearance in Lymphoid Tissues". PLOS COMPUTATIONAL
BIOLOGY (2010): www.orcid.org.
10.1371/journal.pcbi.1000906
- Ribeiro, Ruy M.. "Hepatitis B Virus Kinetics under Antiviral Therapy Sheds Light on Differences in Hepatitis B e Antigen Positive
and Negative Infections". JOURNAL OF INFECTIOUS DISEASES (2010): www.orcid.org.
10.1086/656528
- Ribeiro, Ruy M.. "Experimental depletion of CD8(+) cells in acutely SIVagm-Infected African Green Monkeys results in increased
viral replication". RETROVIROLOGY (2010): www.orcid.org.
10.1186/1742-4690-7-42
- Smith, A.M.; Ribeiro, R.M.; Ribeiro, Ruy M.. "Modeling the viral dynamics of influenza a virus infection". Critical Reviews
in Immunology 30 3 (2010): 291-298. http://www.scopus.com/inward/record.url?eid=2-s2.0-77951003840&partnerID=MN8TOARS.
10.1615/CritRevImmunol.v30.i3.60
- Lewin SR; Ribeiro RM; Avihingsanon A; Bowden S; Matthews G; Marks P; Locarnini SA; et al. "Viral dynamics of hepatitis B virus
DNA in human immunodeficiency virus-1-hepatitis B virus coinfected individuals: similar effectiveness of lamivudine, tenofovir,
or combination therapy.". Hepatology (Baltimore, Md.) (2009): http://europepmc.org/abstract/med/19115219.
10.1002/hep.22754
- Dahari H; Shudo E; Ribeiro RM; Perelson AS; Dahari, H.; Shudo, E.; Ribeiro, R.M.; Perelson, A.S.. "Mathematical modeling of
HCV infection and treatment.". Methods in molecular biology (Clifton, N.J.) 510 (2009): 439-453. http://europepmc.org/abstract/med/19009281.
10.1007/978-1-59745-394-3_33
- Ribeiro, Ruy M.; Lay, M.D.H.; Zhang, L.; Ribeiro, R.M.; Mueller, S.N.; Belz, G.T.; Davenport, M.P.. "Kinetics of Major Histocompatibility
Class I Antigen Presentation in Acute Infection". JOURNAL OF IMMUNOLOGY 182 2 (2009): 902-911. www.orcid.org.
10.4049/jimmunol.182.2.902
- Ribeiro, Ruy M.. "Modeling Complex Decay Profiles of Hepatitis B Virus During Antiviral Therapy". HEPATOLOGY (2009):
www.orcid.org.
10.1002/hep.22586
- Ribeiro, Ruy M.. "Limited ability of humoral immune responses in control of viremia during infection with SIVsmmD215 strain".
BLOOD (2009): www.orcid.org.
10.1182/blood-2008-09-177741
- Ribeiro, Ruy M.. "Modeling HCV kinetics under therapy using PK and PD information". EXPERT OPINION ON DRUG METABOLISM &
TOXICOLOGY (2009): www.orcid.org.
10.1517/17425250902787616
- Ribeiro, Ruy M.. "The race between infection and immunity how do pathogens set the pace?". TRENDS IN IMMUNOLOGY (2009):
www.orcid.org.
10.1016/j.it.2008.11.001
- Ribeiro, Ruy M.. "Division-linked differentiation can account for CD8(+) T-cell phenotype in vivo". EUROPEAN JOURNAL OF
IMMUNOLOGY (2009): www.orcid.org.
10.1002/eji.200838554
- Ribeiro, Ruy M.. "The level of monocyte turnover predicts disease progression in the macaque model of AIDS". BLOOD
(2009): www.orcid.org.
10.1182/blood-2009-02-204263
- Ribeiro, Ruy M.. "Effect of B-Cell Depletion on Viral Replication and Clinical Outcome of Simian Immunodeficiency Virus Infection
in a Natural Host". JOURNAL OF VIROLOGY (2009): www.orcid.org.
10.1128/JVI.00880-09
- Ribeiro, Ruy M.. "The evolutionary rate dynamically tracks changes in HIV-1 epidemics Application of a simple method for
optimizing the evolutionary rate in phylogenetic trees with longitudinal data". Epidemics (2009): www.orcid.org.
10.1016/j.epidem.2009.10.003
- Weinberger, A.D.; Perelson, A.S.; Ribeiro, R.M.; Weinberger, L.S.. "Accelerated Immunodeficiency by Anti-CCR5 Treatment in
HIV Infection". PLoS Computational Biology 5 8 (2009): http://www.scopus.com/inward/record.url?eid=2-s2.0-70449713920&partnerID=MN8TOARS.
10.1371/journal.pcbi.1000467
- Ribeiro, Ruy M.. "A Mathematical Model of Hepatitis C Virus Dynamics in Patients With High Baseline Viral Loads or Advanced
Liver Disease". GASTROENTEROLOGY (2009): www.orcid.org.
10.1053/j.gastro.2008.12.060
- Shudo E; Ribeiro RM; Talal AH; Perelson AS; Shudo, E.; Ribeiro, R.M.; Talal, A.H.; Perelson, A.S.. "A hepatitis C viral kinetic
model that allows for time-varying drug effectiveness.". Antiviral therapy 13 7 (2008): 919-926. http://europepmc.org/abstract/med/19043926.
- Ribeiro, Ruy M.. "The effect of early versus delayed challenge after vaccination in controlling SHIV 89.6P infection". VIROLOGY
(2008): www.orcid.org.
10.1016/j.virol.2008.07.042
- Ribeiro, Ruy M.. "Estimating the Impact of Vaccination on Acute Simian-Human Immunodeficiency Virus/Simian Immunodeficiency
Virus Infections". JOURNAL OF VIROLOGY (2008): www.orcid.org.
10.1128/JVI.01596-08
- Ribeiro, Ruy M.. "Estimating drug efficacy and viral dynamic parameters HIV and HCV". STATISTICS IN MEDICINE (2008):
www.orcid.org.
10.1002/sim.3116
- Ribeiro, Ruy M.. "Modeling amantadine treatment of influenza A virus in vitro". JOURNAL OF THEORETICAL BIOLOGY (2008):
www.orcid.org.
10.1016/j.jtbi.2008.05.031
- Ribeiro, Ruy M.. "Real Time Bayesian Estimation of the Epidemic Potential of Emerging Infectious Diseases". PLoS One
(2008): www.orcid.org.
10.1371/journal.pone.0002185
- Pandrea, I.; Gaufin, T.; Brenchley, J.M.; Gautam, R.; Monjure, C.; Gautam, A.; Coleman, C.; et al. "Cutting edge: Experimentally
induced immune activation in natural hosts of simian immunodeficiency virus induces significant increases in viral replication
and CD4+ T cell depletion". Journal of Immunology 181 10 (2008): 6687-6691. http://www.scopus.com/inward/record.url?eid=2-s2.0-58149177783&partnerID=MN8TOARS.
10.4049/jimmunol.181.10.6687
- Ribeiro, Ruy M.. "Simian immunodeficiency virus SIVagm dynamics in African green monkeys". JOURNAL OF VIROLOGY (2008):
www.orcid.org.
10.1128/JVI.02402-07
- Ribeiro, Ruy M.. "Dynamics of T- and B-lymphocyte turnover in a natural host of simian immunodeficiency virus". JOURNAL
OF VIROLOGY (2008): www.orcid.org.
10.1128/JVI.02197-07
- Ribeiro, Ruy M.. "The contribution of the thymus to the recovery of peripheral naive T-cell numbers during antiretroviral
treatment for HIV infection". JAIDS-JOURNAL OF ACQUIRED IMMUNE DEFICIENCY SYNDROMES (2008): www.orcid.org.
10.1097/QAI.0b013e318184fb28
- Ribeiro, Ruy M.. "Modelling the kinetics of hepatitis C virus RNA decline over 4 weeks of treatment with pegylated interferon
alpha-2b". JOURNAL OF VIRAL HEPATITIS (2008): www.orcid.org.
10.1111/j.1365-2893.2008.00977.x
- Ribeiro, Ruy M.. "Modelling hepatitis C virus kinetics during treatment with pegylated interferon alpha-2b errors in the
estimation of viral kinetic parameters". JOURNAL OF VIRAL HEPATITIS (2008): www.orcid.org.
10.1111/j.1365-2893.2007.00954.x
- Ribeiro, Ruy M.; Pandrea, I.V.; Gautam, R.; Ribeiro, R.M.; Brenchley, J.M.; Butler, I.F.; Pattison, M.; et al. "Acute loss
of intestinal CD4+ T cells is not predictive of simian immunodeficiency virus virulence.". Journal of immunology (Baltimore,
Md. : 1950) 179 5 (2007): 3035-3046. http://europepmc.org/abstract/med/17709518.
10.4049/jimmunol.179.5.3035
- Bettencourt LMA; Ribeiro RM; Chowell G; Lant T; Castillo-Chavez C; Bettencourt, L.M.A.; Ribeiro, R.M.; et al. "Towards Real
Time Epidemiology: Data Assimilation, Modeling and Anomaly Detection of Health Surveillance Data Streams.". Intelligence
and Security Informatics: Biosurveillance 4506 LNCS (2007): http://europepmc.org/abstract/PMC/PMC7122958.
10.1007/978-3-540-72608-1_8
- Ribeiro, Ruy M.. "The role of cells refractory to productive infection in acute hepatitis B viral dynamics". PROCEEDINGS
OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007): www.orcid.org.
10.1073/pnas.0603626104
- Lau, G.K.K.; Cooksley, H.; Ribeiro, R.M.; Powers, K.A.; Shudo, E.; Bowden, S.; Hui, C.-K.; et al. "Impact of early viral kinetics
on T-cell reactivity during antiviral therapy in chronic hepatitis B". Antiviral Therapy 12 5 (2007): 705-718. http://www.scopus.com/inward/record.url?eid=2-s2.0-34547768137&partnerID=MN8TOARS.
- Ribeiro, Ruy M.. "Dynamics of CD4(+) T cells in HIV-1 infection". IMMUNOLOGY AND CELL BIOLOGY (2007): www.orcid.org.
10.1038/sj.icb.7100056
- Ribeiro, Ruy M.. "Understanding the mechanisms and limitations of immune control of HIV". IMMUNOLOGICAL REVIEWS (2007):
www.orcid.org.
10.1111/j.1600-065X.2006.00485.x
- Ribeiro, Ruy M.. "Determining thymic output quantitatively using models to interpret experimental T-cell receptor excision
circle (TREC) data". IMMUNOLOGICAL REVIEWS (2007): www.orcid.org.
10.1111/j.1600-065X.2006.00493.x
- Ribeiro, Ruy M.. "Mathematical modeling of subgenomic hepatitis C virus replication in Huh-7 cells". JOURNAL OF VIROLOGY
(2007): www.orcid.org.
10.1128/JVI.01304-06
- Ribeiro, Ruy M.. "Early ribavirin pharmacokinetics, HCV RNA and alanine aminotransferase kinetics in HIV/HCV co-infected patients
during treatment with pegylated interferon and ribavirin". JOURNAL OF HEPATOLOGY (2007): www.orcid.org.
10.1016/j.jhep.2007.01.027
- Ribeiro, Ruy M.. "Triphasic decline of hepatitis C virus RNA during antiviral therapy". HEPATOLOGY (2007): www.orcid.org.
10.1002/hep.21657
- Ribeiro, Ruy M.. "Modeling hepatitis C virus dynamics Liver regeneration and critical drug efficacy". JOURNAL OF THEORETICAL
BIOLOGY (2007): www.orcid.org.
10.1016/j.jtbi.2007.03.006
- Ribeiro, Ruy M.. "Modeling the mechanisms of acute hepatitis B virus infection". JOURNAL OF THEORETICAL BIOLOGY (2007):
www.orcid.org.
10.1016/j.jtbi.2007.02.017
- Ribeiro, Ruy M.. "Unequal evolutionary rates in the human immunodeficiency virus type I (HIV-1) pandemic The evolutionary
rate of HIV-1 slows down when the epidemic rate increases". JOURNAL OF VIROLOGY (2007): www.orcid.org.
10.1128/JVI.00985-07
- Ribeiro, Ruy M.. "Influence of peak viral load on the extent of CD4(+) T-cell depletion in simian HIV infection". JAIDS-JOURNAL
OF ACQUIRED IMMUNE DEFICIENCY SYNDROMES (2006): www.orcid.org.
10.1097/01.qai.0000199232.31340.d3
- Ribeiro, Ruy M.. "Kinetics of hepatitis C virus reinfection after liver transplantation". LIVER TRANSPLANTATION (2006):
www.orcid.org.
10.1002/lt.20572
- Ribeiro, Ruy M.. "Naive and memory cell turnover as drivers of CCR5-to-CXCR4 tropism switch in human immunodeficiency virus
type 1 Implications for therapy". JOURNAL OF VIROLOGY (2006): www.orcid.org.
10.1128/JVI.80.2.802-809.2006
- Ribeiro, Ruy M.. "Pharmacodynamics of PEG-IFN alpha differentiate HIV/HCV coinfected sustained virological responders from
nonresponders". HEPATOLOGY (2006): www.orcid.org.
10.1002/hep.21136
- Ribeiro, Ruy M.. "Th-1-type cytotoxic CD8(+) T-lymphocyte responses to simian immunodeficiency virus (SIV) are a consistent
feature of natural SIV infection in sooty mangabeys". JOURNAL OF VIROLOGY (2006): www.orcid.org.
10.1128/JVI.80.6.2771-2783.2006
- Layden-Almer, J.E.; Kuiken, C.; Ribeiro, R.M.; Kunstman, K.J.; Perelson, A.S.; Layden, T.J.; Wolinsky, S.M.. "Hepatitis C
virus genotype 1a NS5A pretreatment sequence variation and viral kinetics in African American and white patients". Journal
of Infectious Diseases 192 6 (2005): 1078-1087. http://www.scopus.com/inward/record.url?eid=2-s2.0-24644442144&partnerID=MN8TOARS.
10.1086/432760
- Perelson, A.S.; Ribeiro, R.M.. "Mutagenic effects of ribavirin in vivo". Journal of Hepatology 43 4 (2005): 553-555.
http://www.scopus.com/inward/record.url?eid=2-s2.0-24344463108&partnerID=MN8TOARS.
10.1016/j.jhep.2005.07.003
- Davenport, M.P.; Zhang, L.; Bagchi, A.; Fridman, A.; Fu, T.-M.; Schleif, W.; Shiver, J.W.; Ribeiro, R.M.; Perelson, A.S..
"High-potency human immunodeficiency virus vaccination leads to delayed and reduced CD8+ T-cell expansion but improved
virus control". Journal of Virology 79 15 (2005): 10059-10062. http://www.scopus.com/inward/record.url?eid=2-s2.0-22544453325&partnerID=MN8TOARS.
10.1128/JVI.79.15.10059-10062.2005
- Arron, S.T.; Ribeiro, R.M.; Gettie, A.; Bohm, R.; Blanchard, J.; Yu, J.; Perelson, A.S.; Ho, D.D.; Zhang, L.. "Impact of thymectomy
on the peripheral T cell pool in rhesus macaques before and after infection with simian immunodeficiency virus". European
Journal of Immunology 35 1 (2005): 46-55. http://www.scopus.com/inward/record.url?eid=2-s2.0-12344285945&partnerID=MN8TOARS.
10.1002/eji.200424996
- Elson, K.; Ribeiro, R.M.; Perelson, A.S.; Simmons, A.; Speck, P.. "The life span of ganglionic glia in murine sensory ganglia
estimated by uptake of bromodeoxyuridine". Experimental Neurology 186 1 (2004): 99-103. http://www.scopus.com/inward/record.url?eid=2-s2.0-1242293838&partnerID=MN8TOARS.
10.1016/j.expneurol.2003.10.017
- Davenport, M.P.; Ribeiro, R.M.; Chao, D.L.; Perelson, A.S.. "Predicting the impact of a nonsterilizing vaccine against human
immunodeficiency virus". Journal of Virology 78 20 (2004): 11340-11351. http://www.scopus.com/inward/record.url?eid=2-s2.0-4644249733&partnerID=MN8TOARS.
10.1128/JVI.78.20.11340-11351.2004
- Talal, A.H.; Shata, M.T.; Markatou, M.; Dorante, G.; Chadburn, A.; Koch, R.; Neumann, A.U.; Ribeiro, R.M.; Perelson, A.S..
"Virus Dynamics and Immune Responses during Treatment in Patients Coinfected with Hepatitis C and HIV". Journal of Acquired
Immune Deficiency Syndromes 35 2 (2004): 103-113. http://www.scopus.com/inward/record.url?eid=2-s2.0-1642499256&partnerID=MN8TOARS.
10.1097/00126334-200402010-00001
- Zhang, L.; Ribeiro, R.M.; Mascola, J.R.; Lewis, M.G.; Stiegler, G.; Katinger, H.; Perelson, A.S.; Davenport, M.P.. "Effects
of Antibody on Viral Kinetics in Simian/Human Immunodeficiency Virus Infection: Implications for Vaccination". Journal
of Virology 78 10 (2004): 5520-5522. http://www.scopus.com/inward/record.url?eid=2-s2.0-2342627375&partnerID=MN8TOARS.
10.1128/JVI.78.10.5520-5522.2004
- Di Mascio, M.; Ribeiro, R.M.; Markowitz, M.; Ho, D.D.; Perelson, A.S.. "Modeling the long-term control of viremia in HIV-1
infected patients treated with antiretroviral therapy". Mathematical Biosciences 188 1-2 (2004): 47-62. http://www.scopus.com/inward/record.url?eid=2-s2.0-0842346379&partnerID=MN8TOARS.
10.1016/j.mbs.2003.08.003
- Perelson, A.S.; Ribeiro, R.M.. "Hepatitis B virus kinetics and mathematical modeling". Seminars in Liver Disease 24
SUPPL. 1 (2004): 11-16. http://www.scopus.com/inward/record.url?eid=2-s2.0-2942590744&partnerID=MN8TOARS.
10.1055/s-2004-828673
- Davenport, M.P.; Ribeiro, R.M.; Perelson, A.S.. "Kinetics of virus-specific CD8+ T cells and the control of human immunodeficiency
virus infection". Journal of Virology 78 18 (2004): 10096-10103. http://www.scopus.com/inward/record.url?eid=2-s2.0-4444341172&partnerID=MN8TOARS.
10.1128/JVI.78.18.10096-10103.2004
- Ramratnam, B.; Ribeiro, R.; He, T.; Chung, C.; Simon, V.; Vanderhoeven, J.; Hurley, A.; et al. "Intensification of Antiretroviral
Therapy Accelerates the Decay of the HIV-1 Latent Reservoir and Decreases, but Does Not Eliminate, Ongoing Virus Replication".
Journal of Acquired Immune Deficiency Syndromes 35 1 (2004): 33-37. http://www.scopus.com/inward/record.url?eid=2-s2.0-9144265028&partnerID=MN8TOARS.
10.1097/00126334-200401010-00004
- Layden-Almer, J.E.; Ribeiro, R.M.; Wiley, T.; Perelson, A.S.; Layden, T.J.. "Viral dynamics and response differences in HCV-infected
African American and white patients treated with IFN and ribavirin". Hepatology 37 6 (2003): 1343-1350. http://www.scopus.com/inward/record.url?eid=2-s2.0-0038820380&partnerID=MN8TOARS.
10.1053/jhep.2003.50217
- Layden, T.J.; Layden, J.E.; Ribeiro, R.M.; Perelson, A.S.. "Mathematical modeling of viral kinetics: A tool to understand
and optimize therapy". Clinics in Liver Disease 7 1 (2003): 163-178. http://www.scopus.com/inward/record.url?eid=2-s2.0-0037299166&partnerID=MN8TOARS.
10.1016/S1089-3261(02)00063-6
- Torriani, F.J.; Ribeiro, R.M.; Gilbert, T.L.; Schrenk, U.M.; Clauson, M.; Pacheco, D.M.; Perelson, A.S.. "Hepatitis C Virus
(HCV) and Human Immunodeficiency Virus (HIV) Dynamics during HCV Treatment in HCV/HIV Coinfection". Journal of Infectious
Diseases 188 10 (2003): 1498-1507. http://www.scopus.com/inward/record.url?eid=2-s2.0-0346874143&partnerID=MN8TOARS.
10.1086/379255
- Korthals Altes, H.; Ribeiro, R.M.; De Boer, R.J.. "The race between initial T-helper expansion and virus growth upon HIV infection
influences polyclonality of the response and viral set-point". Proceedings of the Royal Society B: Biological Sciences
270 1522 (2003): 1349-1358. http://www.scopus.com/inward/record.url?eid=2-s2.0-0037963626&partnerID=MN8TOARS.
10.1098/rspb.2003.2377
- Ribeiro, R.M.; Layden-Almer, J.; Powers, K.A.; Layden, T.J.; Perelson, A.S.. "Dynamics of alanine aminotransferase during
hepatitis C virus treatment". Hepatology 38 2 (2003): 509-517. http://www.scopus.com/inward/record.url?eid=2-s2.0-0041764925&partnerID=MN8TOARS.
10.1053/jhep.2003.50344
- Powers, K.A.; Dixit, N.M.; Ribeiro, R.M.; Golia, P.; Talal, A.H.; Perelson, A.S.; Powers KA; et al. "Modeling viral and drug
kinetics: Hepatitis C virus treatment with pegylated interferon alfa-2b". Seminars in Liver Disease 23 SUPPL. 1 (2003):
13-18. http://www.scopus.com/inward/record.url?eid=2-s2.0-0041317673&partnerID=MN8TOARS.
10.1055/s-2003-41630
- Lewin SR; Ribeiro RM; Kaufmann GR; Smith D; Zaunders J; Law M; Solomon A; et al. "Dynamics of T cells and TCR excision circles
differ after treatment of acute and chronic HIV infection.". Journal of immunology (Baltimore, Md. : 1950) 169 8 (2002):
4657-4666. http://europepmc.org/abstract/med/12370406.
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