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Armengaud Jean. Published 212 articles in journals, including numerous reviews. Works in the area(s) of Biological Sciences with emphasis on omics and multi-omics approaches. In his curriculum Ciência Vitae the most frequent terms in the context of scientific, technological and artistic-cultural output are: proteomics; proteogenomics; metaproteomics; non-model organisms. Expert in proteogenomics, the alliance of genomics and proteomics for the characterization of non-model organisms, as well as in mass spectrometry for the identification and characterization of pathogens, and the definition of biomarkers for medical and environmental purposes. He manages a mass spectrometry research unit located near Avignon in France. His research team develops new methodologies for the study of microbiota and their clinical and environmental applications.
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Identification

Personal identification

Full name
Armengaud Jean

Citation names

  • Jean, Armengaud

Author identifiers

Ciência ID
A913-BA47-5664
ORCID iD
0000-0003-1589-445X

Knowledge fields

  • Natural sciences - Biological Sciences - Molecular Biology

Languages

Language Speaking Reading Writing Listening Peer-review
French (Mother tongue)
English Proficiency (C2) Proficiency (C2) Proficiency (C2) Proficiency (C2) Proficiency (C2)
Spanish; Castilian Proficiency (C2) Proficiency (C2) Proficiency (C2) Proficiency (C2) Proficiency (C2)
Education
Degree Classification
1991/10/01 - 1994/10/08
Concluded
 Biology (Doctorat)
Université Grenoble Alpes, France
Affiliation

Science

Category
Host institution 		Employer
2000/12/20 - Current Principal Investigator (Research) Commissariat a l'energie atomique et aux energies alternatives Centre de Saclay, France
Commissariat a l'energie atomique et aux energies alternatives Centre de Saclay, France
Projects

Grant

Designation Funders
2021/01/01 - 2023/12/31 Dynamics of microbiome from an aquatic sentinel species upon toxicants – Dyn-Microbiome
ANR-20-CE34-0012
Principal investigator
Commissariat à l¿énergie atomique et aux énergies alternatives, France
 Agence nationale de la recherche
Ongoing
2018/01/01 - 2021/12/31 Phylopeptidomics
ANR-17-CE18-0023
Principal investigator
Commissariat à l¿énergie atomique et aux énergies alternatives, France
 Agence nationale de la recherche
Concluded
Outputs

Publications

Book chapter
  1. Laidson Paes Gomes; Catarina Gouveia e Silva; Jean-Charles Gaillard; Jean Armengaud; Ana Varela Coelho. "Characterization of Soluble Cell-Free Coelomic Fluid Proteome from the Starfish Marthasterias glacialis". 2022.
    10.1007/978-1-0716-2172-1_31
Journal article
  1. Madisson Chabas; Jean Armengaud; Béatrice Alpha-Bazin. "A Simplified Label-Free Method for Proteotyping Sets of Six Isolates in a Single Liquid Chromatography-High-Resolution Tandem Mass Spectrometry Analysis". Journal of Proteome Research (2024): https://doi.org/10.1021/acs.jproteome.3c00535.
    10.1021/acs.jproteome.3c00535
  2. Katharina Runzheimer; Clément Lozano; Diana Boy; Jens Boy; Roberto Godoy; Francisco J. Matus; Denise Engel; et al. "Exploring Andean High-Altitude Lake Extremophiles through Advanced Proteotyping". Journal of Proteome Research (2024): https://doi.org/10.1021/acs.jproteome.3c00538.
    10.1021/acs.jproteome.3c00538
  3. Lise Molinelli; Elodie Drula; Jean-Charles Gaillard; David Navarro; Jean Armengaud; Jean-Guy Berrin; Thierry Tron; Lionel Tarrago; Yvonne Nygård. "Methionine oxidation of carbohydrate-active enzymes during white-rot wood decay". Applied and Environmental Microbiology (2024): https://doi.org/10.1128/aem.01931-23.
    10.1128/aem.01931-23
  4. Madisson Chabas; Jean-Charles Gaillard; Béatrice Alpha-Bazin; Jean Armengaud. "Flash MS/MS proteotyping allows identifying microbial isolates in 36 s of mass spectrometry signal". PROTEOMICS (2024): https://doi.org/10.1002/pmic.202300372.
    10.1002/pmic.202300372
  5. Imed Dorbani; Jean Armengaud; Frédéric Carlin; Catherine Duport. "Proteome of spores from biological indicators in sterilization processes: Bacillus pumilus and Bacillus atrophaeus". PROTEOMICS (2023): https://doi.org/10.1002/pmic.202300293.
    10.1002/pmic.202300293
  6. Léo Schlosser-Perrin; Philippe Holzmuller; Bernard Fernandez; Guylaine Miotello; Noureddine Dahmani; Aymeric Neyret; Stéphane Bertagnoli; et al. "Constitutive proteins of lumpy skin disease virion assessed by next-generation proteomics". Journal of Virology (2023): https://doi.org/10.1128/jvi.00723-23.
    10.1128/jvi.00723-23
  7. Fabrice Bertile; Sabine Matallana-Surget; Andreas Tholey; Susana Cristobal; Jean Armengaud. "Diversifying the concept of model organisms in the age of -omics". Communications Biology (2023): https://doi.org/10.1038/s42003-023-05458-x.
    10.1038/s42003-023-05458-x
  8. Maxime Leprêtre; Arnaud Chaumot; Rayan Aboud; Nicolas Delorme; Anabelle Espeyte; Arnaud Salvador; Sophie Ayciriex; et al. "Dynamic Multiple Reaction Monitoring of amphipod Gammarus fossarum caeca expands molecular information for understanding the impact of contaminants". Science of The Total Environment 893 (2023): 164875-164875. http://dx.doi.org/10.1016/j.scitotenv.2023.164875.
    10.1016/j.scitotenv.2023.164875
  9. Madisson Chabas; Olivier Pible; Jean Armengaud; Béatrice Alpha-Bazin. "Label-Free Multiplex Proteotyping of Microbial Isolates". Analytical Chemistry (2023): https://doi.org/10.1021/acs.analchem.3c01975.
    10.1021/acs.analchem.3c01975
  10. Anne-Soisig Steunou; Marion Babot; Anne Durand; Marie-Line Bourbon; Sylviane Liotenberg; Guylaine Miotello; Jean Armengaud; Soufian Ouchane; Jannell V. Bazurto. "Discriminating Susceptibility of Xanthine Oxidoreductase Family to Metals". Microbiology Spectrum (2023): https://doi.org/10.1128/spectrum.04814-22.
    10.1128/spectrum.04814-22
  11. Pauline Petit; Karim Hayoun; Béatrice Alpha-Bazin; Jean Armengaud; Corinne Rivasseau. "First Isolation and Characterization of Bacteria from the Core’s Cooling Pool of an Operating Nuclear Reactor". Microorganisms (2023): https://doi.org/10.3390/microorganisms11081871.
    10.3390/microorganisms11081871
  12. Benjamin A. R. N. Durand; Catherine Dunyach-Remy; Oumayma El Kaddouri; Riham Daher; Jean-Philippe Lavigne; Jean Armengaud; Lucia Grenga. "Proteomic insights into Helcococcus kunzii in a diabetic foot ulcer-like environment". PROTEOMICS – Clinical Applications (2023): https://doi.org/10.1002/prca.202200069.
    10.1002/prca.202200069
  13. Clément Baratange; Hugo Baali; Véronique Gaillet; Isabelle Bonnard; Laurence Delahaut; Jean-Charles Gaillard; Dominique Grandjean; et al. "Bioaccumulation and molecular effects of carbamazepine and methylmercury co-exposure in males of Dreissena polymorpha". Science of The Total Environment (2023): 165379-165379. http://dx.doi.org/10.1016/j.scitotenv.2023.165379.
    10.1016/j.scitotenv.2023.165379
  14. Anais Defois; Nina Bon; Alexandre Charpentier; Melina Georget; Nicolas Gaigeard; Frederic Blanchard; Antoine Hamel; et al. "Osteoarthritic chondrocytes undergo a glycolysis-related metabolic switch upon exposure to IL-1b or TNF". Cell Communication and Signaling 21 1 (2023): http://dx.doi.org/10.1186/s12964-023-01150-z.
    10.1186/s12964-023-01150-z
  15. Mélanie Gonzales; Laure Plener; Jean Armengaud; Nicholas Armstrong; Éric Chabrière; David Daudé. "Lactonase-mediated inhibition of quorum sensing largely alters phenotypes, proteome, and antimicrobial activities in Burkholderia thailandensis E264". Frontiers in Cellular and Infection Microbiology 13 (2023): http://dx.doi.org/10.3389/fcimb.2023.1190859.
    10.3389/fcimb.2023.1190859
  16. Petar Pujic; Lorena Carro; Pascale Fournier; Jean ARMENGAUD; Guylaine Miotello; Nathalie Dumont; Caroline Bourgeois; et al. "Frankia alni Carbonic Anhydrase Regulates Cytoplasmic pH of Nitrogen-Fixing Vesicles". International Journal of Molecular Sciences 24 11 (2023): 9162-9162. http://dx.doi.org/10.3390/ijms24119162.
    10.3390/ijms24119162
  17. Charlotte Mappa; BEATRICE ALPHA-BAZIN; Olivier Pible; Jean ARMENGAUD. "Mix24X, a Lab-Assembled Reference to Evaluate Interpretation Procedures for Tandem Mass Spectrometry Proteotyping of Complex Samples". International Journal of Molecular Sciences 24 10 (2023): 8634-8634. http://dx.doi.org/10.3390/ijms24108634.
    10.3390/ijms24108634
  18. Abdelali Daddaoua; Consolación Álvarez; Monika Oggerin; Nuria Rodriguez; Estrella Duque; Ricardo Amils; Jean Armengaud; Ana Segura; Juan Luis Ramos. "Rio Tinto as a niche for acidophilus enzymes of industrial relevance". Microbial Biotechnology (2023): https://doi.org/10.1111/1751-7915.14192.
    10.1111/1751-7915.14192
  19. Charlotte Mappa; BEATRICE ALPHA-BAZIN; Olivier Pible; Jean ARMENGAUD. "Evaluation of the Limit of Detection of Bacteria by Tandem Mass Spectrometry Proteotyping and Phylopeptidomics". Microorganisms 11 5 (2023): 1170-1170. http://dx.doi.org/10.3390/microorganisms11051170.
    10.3390/microorganisms11051170
  20. Olivier Pible; Pauline Petit; Gérard Steinmetz; Corinne Rivasseau; Jean Armengaud. "Taxonomical composition and functional analysis of biofilms sampled from a nuclear storage pool". Frontiers in Microbiology 14 (2023): http://dx.doi.org/10.3389/fmicb.2023.1148976.
    10.3389/fmicb.2023.1148976
  21. Alicia Vallet; Jacqueline Martin-Laffon; Adrien Favier; Benoît Revel; Titouan Bonnot; Claude Vidaud; Jean Armengaud; et al. "The plasma membrane-associated cation-binding protein PCaP1 of Arabidopsis thaliana is a uranyl-binding protein". Journal of Hazardous Materials (2023): https://doi.org/10.1016/j.jhazmat.2022.130668.
    10.1016/j.jhazmat.2022.130668
  22. Virginie Bourdin; Philippe Charlier; Stéphane Crevat; Lotfi Slimani; Catherine Chaussain; Mélodie Kielbasa; Olivier Pible; Jean Armengaud. "Deep Paleoproteotyping and Microtomography Revealed No Heart Defect nor Traces of Embalming in the Cardiac Relics of Blessed Pauline Jaricot". International Journal of Molecular Sciences (2023): https://doi.org/10.3390/ijms24033011.
    10.3390/ijms24033011
  23. Clément Lozano; Lucia Grenga; Fabrice Gallais; Guylaine Miotello; Laurent Bellanger; Jean Armengaud. "Mass spectrometry detection of monkeypox virus: Comprehensive coverage for ranking the most responsive peptide markers". PROTEOMICS (2023): https://doi.org/10.1002/pmic.202200253.
    10.1002/pmic.202200253
  24. Jean Armengaud. "Metaproteomics to understand how microbiota function: The crystal ball predicts a promising future". Environmental Microbiology (2023): https://doi.org/10.1111/1462-2920.16238.
    10.1111/1462-2920.16238
  25. Mabondzo, Aloise; Harati, Rania; Broca-Brisson, Lea; Guyot, Anne-Cecile; Costa, Narciso; Cacciante, Francesco; Putignano, Elena; et al. "Dodecyl creatine ester improves cognitive function and identifies key protein drivers including KIF1A and PLCB1 in a mouse model of creatine transporter deficiency". Frontiers in Molecular Neuroscience (2023): https://publons.com/wos-op/publon/56053641/.
    10.3389/FNMOL.2023.1118707
  26. Laurent, Jennifer; Le Berre, Iwan; Armengaud, Jean; Kailasam, Senthilkumar; Couteau, Jerome; Waeles, Matthieu; Le Floch, Stephane; Laroche, Jean; Pichereau, Vianney. "Integration of environmental signatures and omics-based approaches on the European flounder to assist with health assessment of estuarine ecosystems in Brittany, France". Science of the Total Environment (2023): https://publons.com/wos-op/publon/56932179/.
    10.1016/J.SCITOTENV.2023.163195
  27. Hama, Hamadou Oumarou; Chenal, Thomas; Pible, Olivier; Miotello, Guylaine; Armengaud, Jean; Drancourt, Michel. "An ancient coronavirus from individuals in France, circa 16th century". International Journal of Infectious Diseases (2023): https://publons.com/wos-op/publon/56932185/.
    10.1016/J.IJID.2023.03.019
  28. Martinez-Espinosa, Rosa Maria; Armengaud, Jean; Matallana-Surget, Sabine; Olaya-Abril, Alfonso. "Editorial: Environmental omics and their biotechnological applications". Frontiers in Microbiology (2023): https://publons.com/wos-op/publon/56932182/.
    10.3389/FMICB.2023.1165558
  29. Petar Pujic; Nicole Alloisio; Guylaine Miotello; Jean Armengaud; Danis Abrouk; Pascale Fournier; Philippe Normand. "Correction: Pujic et al. The Proteogenome of Symbiotic Frankia alni in Alnus glutinosa Nodules. Microorganisms 2022, 10, 651". Microorganisms (2022): https://doi.org/10.3390/microorganisms10112229.
    10.3390/microorganisms10112229
  30. Jean Armengaud. "Unique Insights into How Plants and Soil Microbiomes Interact Are at Our Fingertips". mSystems (2022): https://doi.org/10.1128/msystems.00589-22.
    10.1128/msystems.00589-22
  31. Yeseul Park; Zohar Eyal; Péter Pekker; Daniel M. Chevrier; Christopher T. Lefèvre; Pascal Arnoux; Jean Armengaud; et al. "Periplasmic Bacterial Biomineralization of Copper Sulfide Nanoparticles". Advanced Science (2022): https://doi.org/10.1002/advs.202203444.
    10.1002/advs.202203444
  32. Subina Mehta; Valdemir M. Carvalho; Andrew Rajczewski; Olivier Pible; Björn A. Grüning; James E. Johnson; Reid Wagner; et al. "Catching the Wave: Detecting Strain-Specific SARS-CoV-2 Peptides in Clinical Samples Collected during Infection Waves from Diverse Geographical Locations". Viruses (2022): https://www.mdpi.com/1999-4915/14/10/2205.
    10.3390/v14102205
  33. Amal Ben Ayed; Imen Akrout; Quentin Albert; Stéphane Greff; Charlotte Simmler; Jean Armengaud; Mélodie Kielbasa; et al. "Biotransformation of the Fluoroquinolone, Levofloxacin, by the White-Rot Fungus Coriolopsis gallica". Journal of Fungi (2022): https://doi.org/10.3390/jof8090965.
    10.3390/jof8090965
  34. Clément Lozano; Mélodie Kielbasa; Jean-Charles Gaillard; Guylaine Miotello; Olivier Pible; Jean Armengaud. "Identification and Characterization of Marine Microorganisms by Tandem Mass Spectrometry Proteotyping". Microorganisms (2022): https://doi.org/10.3390/microorganisms10040719.
    10.3390/microorganisms10040719
  35. Petar Pujic; Nicole Alloisio; Guylaine Miotello; Jean Armengaud; Danis Abrouk; Pascale Fournier; Philippe Normand. "The Proteogenome of Symbiotic Frankia alni in Alnus glutinosa Nodules". Microorganisms (2022): https://doi.org/10.3390/microorganisms10030651.
    10.3390/microorganisms10030651
  36. Othmann MERABET; Natalia Pietrosemoli; Emeline Perthame; Jean ARMENGAUD; Jean-Charles Gaillard; Virginie Borges-Cardoso; Maïlys Daniau; et al. "Infection of Human Endothelial Cells with Lassa Virus Induces Early but Transient Activation and Low Type I IFN Response Compared to the Closely-Related Nonpathogenic Mopeia Virus". Viruses (2022): https://www.mdpi.com/1999-4915/14/3/652.
    10.3390/v14030652
  37. Christophe Hirtz; Atef Mahmoud Mannaa; Estelle Moulis; Olivier Pible; Robin O’Flynn; Jean Armengaud; Virginie Jouffret; et al. "Deciphering Black Extrinsic Tooth Stain Composition in Children Using Metaproteomics". ACS Omega (2022): https://doi.org/10.1021/acsomega.1c04770.
    10.1021/acsomega.1c04770
  38. Alice Chateau; Béatrice Alpha-Bazin; Jean Armengaud; Catherine Duport. "Heme A Synthase Deficiency Affects the Ability of Bacillus cereus to Adapt to a Nutrient-Limited Environment". International Journal of Molecular Sciences (2022): https://doi.org/10.3390/ijms23031033.
    10.3390/ijms23031033
  39. Isabel Marques; Duarte Gouveia; Jean-Charles Gaillard; Sónia Martins; Magda C. Semedo; Fernando C. Lidon; Fábio M. DaMatta; et al. "Next-Generation Proteomics Reveals a Greater Antioxidative Response to Drought in Coffea arabica Than in Coffea canephora". Agronomy (2022): https://doi.org/10.3390/agronomy12010148.
    10.3390/agronomy12010148
  40. Hamadou OUMAROU HAMA; Thomas Chenal; Olivier Pible; Guylaine Miotello; Jean Armengaud; Rémi Barbieri; Michel Drancourt. "An Ancient Coronavirus from Individuals in France, Circa 16th Century". SSRN Electronic Journal (2022): http://dx.doi.org/10.2139/ssrn.4272743.
    10.2139/ssrn.4272743
  41. Grosjean, Nicolas; Le Jean, Marie; Chalot, Michel; Mora-Montes, Hector M.; Armengaud, Jean; Gross, Elisabeth M.; Blaudez, Damien. "Genome-Wide Mutant Screening in Yeast Reveals that the Cell Wall is a First Shield to Discriminate Light From Heavy Lanthanides". Frontiers in Microbiology (2022): https://publons.com/wos-op/publon/56932078/.
    10.3389/FMICB.2022.881535
  42. Grosjean, Nicolas; Le Jean, Marie; Armengaud, Jean; Schikora, Adam; Chalot, Michel; Gross, Elisabeth M.; Blaudez, Damien. "Combined omics approaches reveal distinct responses between light and heavy rare earth elements in Saccharomyces cerevisiae". Journal of Hazardous Materials (2022): https://publons.com/wos-op/publon/50948016/.
    10.1016/J.JHAZMAT.2021.127830
  43. Dumas, Thibaut; Courant, Frederique; Almunia, Christine; Boccard, Julien; Rosain, David; Duporte, Geoffroy; Armengaud, Jean; Fenet, Helene; Gomez, Elena. "An integrated metabolomics and proteogenomics approach reveals molecular alterations following carbamazepine exposure in the male mussel Mytilus galloprovincialis". Chemosphere (2022): https://publons.com/wos-op/publon/50406414/.
    10.1016/J.CHEMOSPHERE.2021.131793
  44. Yu, Chungui; Armengaud, Jean; Blaustein, Ryan Andrew; Chen, Kezhen; Ye, Zhe; Xu, Fengjun; Gaillard, Jean-Charles; et al. "Antibiotic tolerance and degradation capacity of the organic pollutant-degrading bacterium Rhodococcus biphenylivorans TG9T". Journal of Hazardous Materials (2022): https://publons.com/wos-op/publon/56932079/.
    10.1016/J.JHAZMAT.2021.127712
  45. Gallois, Nicolas; Alpha-Bazin, Beatrice; Bremond, Nicolas; Ortet, Philippe; Barakat, Mohamed; Piette, Laurie; Ali, Abbas Mohamad; et al. "Discovery and characterization of UipA, a uranium- and iron-binding PepSY protein involved in uranium tolerance by soil bacteria". The ISME Journal (2022): https://publons.com/wos-op/publon/49513868/.
    10.1038/S41396-021-01113-7
  46. Marques, Isabel; Rodrigues, Ana P.; Gouveia, Duarte; Lidon, Fernando C.; Martins, Sonia; Semedo, Magda C.; Gaillard, Jean-Charles; et al. "High-resolution shotgun proteomics reveals that increased air [CO2] amplifies the acclimation response of Coffea species to drought regarding antioxidative, energy, sugar, and lipid dynamics". Journal of Plant Physiology (2022): https://publons.com/wos-op/publon/53442744/.
    10.1016/J.JPLPH.2022.153788
  47. Gueddou, Abdellatif; Sarker, Indrani; Sen, Arnab; Ghodhbane-Gtari, Faten; Benson, David R.; Armengaud, Jean; Gtari, Maher. "Effect of actinorhizal root exudates on the proteomes of Frankia soli NRRL B-16219, a strain colonizing the root tissues of its actinorhizal host via intercellular pathway". Research in Microbiology (2022): https://publons.com/wos-op/publon/56317165/.
    10.1016/J.RESMIC.2021.103900
  48. Fernandez, Bernard; Armengaud, Jean; Subra, Gilles; Enjalbal, Christine. "MALDI-MS/MS of N-Terminal TMPP-Acyl Peptides: A Worthwhile Tool to Decipher Protein N-Termini". European Journal of Organic Chemistry (2022): https://publons.com/wos-op/publon/51119127/.
    10.1002/EJOC.202101549
  49. Armengaud, Jean. "Protecting our environment, a motivating outdoor game for proteomics!". Proteomics (2022): https://publons.com/wos-op/publon/56932072/.
    10.1002/PMIC.202200055
  50. Hassan, Hamdy A.; d'Enza, Marina; Armengaud, Jean; Pieper, Dietmar H.. "Biochemical and genetic characterization comparison of four extradiol dioxygenases in Rhizorhabdus wittichii RW1". Applied Microbiology and Biotechnology (2022): https://publons.com/wos-op/publon/53435515/.
    10.1007/S00253-022-12099-3
  51. Gallois, Nicolas; Alpha-Bazin, Beatrice; Bremond, Nicolas; Ortet, Philippe; Barakat, Mohamed; Piette, Laurie; Mohamad Ali, Abbas; et al. "Discovery and characterization of UipA, a uranium- and iron-binding PepSY protein involved in uranium tolerance by soil bacteria (Sept, 10.1038/s41396-021-01113-7, 2021)". The ISME Journal (2022): https://publons.com/wos-op/publon/51083747/.
    10.1038/S41396-021-01164-W
  52. Goncalves, Luis Gafeira; Santos, Susana; Gomes, Laidson Paes; Armengaud, Jean; Miragaia, Maria; Coelho, Ana Varela. "Skin-to-blood pH shift triggers metabolome and proteome global remodelling in Staphylococcus epidermidis". Frontiers in Microbiology (2022): https://publons.com/wos-op/publon/56932077/.
    10.3389/FMICB.2022.1000737
  53. Hardouin, Pauline; Pible, Olivier; Marchandin, Helene; Culotta, Karen; Armengaud, Jean; Chiron, Raphael; Grenga, Lucia. "Quick and wide-range taxonomical repertoire establishment of the cystic fibrosis lung microbiota by tandem mass spectrometry on sputum samples". Frontiers in Microbiology (2022): https://publons.com/wos-op/publon/56932070/.
    10.3389/FMICB.2022.975883
  54. Boutonnet, Cecile; Lyonnais, Sebastien; Alpha-Bazin, Beatrice; Armengaud, Jean; Chateau, Alice; Duport, Catherine. "Dynamic Profile of S-Layer Proteins Controls Surface Properties of Emetic Bacillus cereus AH187 Strain". Frontiers in Microbiology (2022): https://publons.com/wos-op/publon/56932071/.
    10.3389/FMICB.2022.937862
  55. Alicia Vallet; Jacqueline Martin-Laffon; Adrien Favier; Benoît Revel; Titouan Bonnot; Claude Vidaud; Jean Armengaud; et al. "The Plasma Membrane-Associated Cation-Binding Protein Pcap1 of Arabidopsis Thaliana is a Uranyl-Binding Protein". SSRN Electronic Journal (2022): http://dx.doi.org/10.2139/ssrn.4253568.
    10.2139/ssrn.4253568
  56. Grenga, Lucia; Pible, Olivier; Miotello, Guylaine; Culotta, Karen; Ruat, Sylvie; Roncato, Marie-Anne; Gas, Fabienne; et al. "Taxonomical and functional changes in COVID-19 faecal microbiome could be related to SARS-CoV-2 faecal load". Environmental Microbiology (2022): https://publons.com/wos-op/publon/56932086/.
    10.1111/1462-2920.16028
  57. Virginie Jouffret; Guylaine Miotello; Karen Culotta; Sophie Ayrault; Olivier Pible; Jean Armengaud. "Increasing the power of interpretation for soil metaproteomics data". Microbiome (2021): https://doi.org/10.1186/s40168-021-01139-1.
    10.1186/s40168-021-01139-1
  58. Tim Van Den Bossche; Benoit J. Kunath; Kay Schallert; Stephanie S. Schäpe; Paul E. Abraham; Jean Armengaud; Magnus Ø. Arntzen; et al. "Critical Assessment of MetaProteome Investigation (CAMPI): a multi-laboratory comparison of established workflows". Nature Communications (2021): https://doi.org/10.1038/s41467-021-27542-8.
    10.1038/s41467-021-27542-8
  59. Claudia Cosio; Davide Degli-Esposti; Christine Almunia; Véronique Gaillet; Hervé Sartelet; Jean Armengaud; Arnaud Chaumot; Olivier Geffard; Alain Geffard. "Subcellular Distribution of Dietary Methyl-Mercury in Gammarus fossarum and Its Impact on the Amphipod Proteome". Environmental Science & Technology (2021): https://doi.org/10.1021/acs.est.1c02385.
    10.1021/acs.est.1c02385
  60. Mihaela Tudor; Antoine Gilbert; Charlotte Lepleux; Mihaela Temelie; Sonia Hem; Jean Armengaud; Emilie Brotin; et al. "A Proteomic Study Suggests Stress Granules as New Potential Actors in Radiation-Induced Bystander Effects". International Journal of Molecular Sciences 22 15 (2021): 7957-7957. https://doi.org/10.3390/ijms22157957.
    10.3390/ijms22157957
  61. Fella Hamitouche; Jean Armengaud; Luc Dedieu; Catherine Duport. "Cysteine Proteome Reveals Response to Endogenous Oxidative Stress in Bacillus cereus". International Journal of Molecular Sciences 22 14 (2021): 7550-7550. https://doi.org/10.3390/ijms22147550.
    10.3390/ijms22147550
  62. Pauline Hardouin; Raphael Chiron; Hélène Marchandin; Jean Armengaud; Lucia Grenga. "Metaproteomics to Decipher CF Host-Microbiota Interactions: Overview, Challenges and Future Perspectives". Genes 12 6 (2021): 892-892. https://doi.org/10.3390/genes12060892.
    10.3390/genes12060892
  63. Catherine Duport; Jean-Paul Madeira; Mahsa Farjad; Béatrice Alpha-Bazin; Jean Armengaud. "Methionine Sulfoxide Reductases Contribute to Anaerobic Fermentative Metabolism in Bacillus cereus". Antioxidants (2021): https://doi.org/10.3390/antiox10050819.
    10.3390/antiox10050819
  64. Alpha-Bazin, Béatrice; Gorlas, Aurore; Lagorce, Arnaud; Joulié, Damien; Boyer, Jean-Baptiste; Dutertre, Murielle; Gaillard, Jean-Charles; et al. "Lysine-specific acetylated proteome from the archaeon Thermococcus gammatolerans reveals the presence of acetylated histones". Journal of Proteomics 232 (2021): 104044. http://dx.doi.org/10.1016/j.jprot.2020.104044.
    10.1016/j.jprot.2020.104044
  65. Lucia Grenga; Jean Armengaud. "Proteomics in the COVID-19 Battlefield: First Semester Check-Up". PROTEOMICS (2021): 2000198-2000198. https://doi.org/10.1002/pmic.202000198.
    10.1002/pmic.202000198
  66. Guesmi, Sihem; Pujic, Petar; Nouioui, Imen; Dubost, Audrey; Najjari, Afef; Ghedira, Kais; Igual, José M.; et al. "Ionizing-radiation-resistant Kocuria rhizophila PT10 isolated from the Tunisian Sahara xerophyte Panicum turgidum: Polyphasic characterization and proteogenomic arsenal". Genomics 113 1 (2021): 317-330. http://dx.doi.org/10.1016/j.ygeno.2020.11.029.
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  67. Rosner, Amalia; Armengaud, Jean; Ballarin, Loriano; Barnay-Verdier, Stephanie; Cima, Francesca; Coelho, Ana Varela; Domart-Coulon, Isabelle; et al. "Stem cells of aquatic invertebrates as an advanced tool for assessing ecotoxicological impacts". Science of the Total Environment (2021): https://publons.com/wos-op/publon/42137915/.
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  68. Stimmer, Lev; Confais, Joachim; Jong, Anke't; Veth, Jennifer; Fovet, Claire-Maelle; Horellou, Philippe; Massonneau, Julie; et al. "Recombinant myelin oligodendrocyte glycoprotein quality modifies evolution of experimental autoimmune encephalitis in macaques". Laboratory Investigation (2021): https://publons.com/wos-op/publon/56041929/.
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  69. Hernandez-Enriquez, Marco; Belle, Loic; Madiot, Hende; Pansieri, Michel; Souteyrand, Geraud; de Poli, Fabiel; Piot, Christophe; et al. "Use and outcomes of thePKPapyrus covered stent in France:SOS PKPapyrus Registry". Catheterization and Cardiovascular Interventions (2021): https://publons.com/wos-op/publon/44133015/.
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  70. Gallais, Fabrice; Pible, Olivier; Gaillard, Jean-Charles; Debroas, Stephanie; Batina, Helene; Ruat, Sylvie; Sandron, Florian; et al. "Heterogeneity of SARS-CoV-2 virus produced in cell culture revealed by shotgun proteomics and supported by genome sequencing". Analytical and Bioanalytical Chemistry (2021): https://publons.com/wos-op/publon/46537933/.
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  71. Armengaud, Jean. "Unleashing immuno-mass spectrometry superpowers to detect SARS-CoV-2". EBioMedicine (2021): https://publons.com/wos-op/publon/56932082/.
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  72. Hamitouche, Fella; Gaillard, Jean-Charles; Schmitt, Philippe; Armengaud, Jean; Duport, Catherine; Dedieu, Luc. "Redox proteomic study of Bacillus cereus thiol proteome during fermentative anaerobic growth". BMC Genomics (2021): https://publons.com/wos-op/publon/56932081/.
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  73. Koenig, Natacha; Almunia, Christine; Bonnal-Conduzorgues, Aurore; Armengaud, Jean; Chaumot, Arnaud; Geffard, Olivier; Degli Esposti, Davide. "Co-expression network analysis identifies novel molecular pathways associated with cadmium and pyriproxyfen testicular toxicity in Gammarus fossarum". Aquatic Toxicology (2021): https://publons.com/wos-op/publon/46950009/.
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  74. Lepretre, Maxime; Faury, Nicole; Segarra, Amelie; Claverol, Stephane; Degremont, Lionel; Palos-Ladeiro, Melissa; Armengaud, Jean; Renault, Tristan; Morga, Benjamin. "Comparative Proteomics of Ostreid Herpesvirus 1 and Pacific Oyster Interactions With Two Families Exhibiting Contrasted Susceptibility to Viral Infection". Frontiers in Immunology (2021): https://publons.com/wos-op/publon/39282463/.
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  75. Torres, Rita; Sobral, Daniel; Fernandes, Ana; Sardoo, Atlas; Bernardes, Miguel; Pinto, Patricia; Santos, Helena; et al. "Molecular Profiling of Radiographic Axial Spondyloarthritis Patients -Reveals an Association Between Innate and Adaptive Cell Populations and Therapeutic Response to Adalimumab". Arthritis & Rheumatology (2021): https://publons.com/wos-op/publon/56932098/.
  76. van den Bossche, Tim; Arntzen, Magnus O.; Becher, Dorte; Benndorf, Dirk; Eijsink, Vincent G. H.; Henry, Celine; Jagtap, Pratik D.; et al. "The Metaproteomics Initiative: a coordinated approach for propelling the functional characterization of microbiomes". Microbiome (2021): https://publons.com/wos-op/publon/50659069/.
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  77. Van Eesbeeck, Valerie; Props, Ruben; Mysara, Mohamed; Petit, Pauline C. M.; Rivasseau, Corinne; Armengaud, Jean; Monsieurs, Pieter; Mahillon, Jacques; Leys, Natalie. "Cyclical Patterns Affect Microbial Dynamics in the Water Basin of a Nuclear Research Reactor". Frontiers in Microbiology (2021): https://publons.com/wos-op/publon/53871327/.
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  78. Boulghobra, Doria; Dubois, Mathilde; Alpha-Bazin, Beatrice; Coste, Florence; Olmos, Maxime; Gayrard, Sandrine; Bornard, Isabelle; et al. "Increased protein S-nitrosylation in mitochondria: a key mechanism of exercise-induced cardioprotection". Basic Research in Cardiology (2021): https://publons.com/wos-op/publon/56932080/.
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  79. Pinel-Cabello, M.; Chapon, V; Ruiz-Fresneda, M. A.; Alpha-Bazin, B.; Berthomieu, C.; Armengaud, J.; Merroun, M. L.. "Delineation of cellular stages and identification of key proteins for reduction and biotransformation of Se(IV) by Stenotrophomonas bentonitica BII-R7". Journal of Hazardous Materials (2021): https://publons.com/wos-op/publon/47494422/.
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  80. Sobral, D.; Fernandes, A. F.; Mashayekhi Sardoo, A.; Bernardes, M.; Pinto, P.; Santos, H.; Gomes, J. L.; et al. "MOLECULAR PROFILING OF RADIOGRAPHIC AXIAL SPONDYLOARTHRITIS PATIENTS REVEALS AN ASSOCIATION BETWEEN INNATE AND ADAPTIVE CELL POPULATIONS AND THERAPEUTIC RESPONSE TO ADALIMUMAB". Annals of the Rheumatic Diseases (2021): https://publons.com/wos-op/publon/51296820/.
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  81. Olivier Pible; François Allain; Virginie Jouffret; Karen Culotta; Guylaine Miotello; Jean Armengaud. "Estimating relative biomasses of organisms in microbiota using “phylopeptidomics”". Microbiome (2020): https://doi.org/10.1186/s40168-020-00797-x.
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  82. Pauline C. M. Petit; Olivier Pible; Valérie Van Eesbeeck; Claude Alban; Gérard Steinmetz; Mohamed Mysara; Pieter Monsieurs; Jean Armengaud; Corinne Rivasseau. "Direct Meta-Analyses Reveal Unexpected Microbial Life in the Highly Radioactive Water of an Operating Nuclear Reactor Core". Microorganisms 8 12 (2020): 1857-1857. https://doi.org/10.3390/microorganisms8121857.
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  83. Semedo, José N; Rodrigues, Ana P; Lidon, Fernando C; Pais, Isabel P; Marques, Isabel; Gouveia, Duarte; Armengaud, Jean; et al. "Intrinsic non-stomatal resilience to drought of the photosynthetic apparatus in Coffea spp. is strengthened by elevated air [CO2]". Tree Physiology 41 5 (2020): 708-727. http://dx.doi.org/10.1093/treephys/tpaa158.
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  84. Murray, Alison E.; Freudenstein, John; Gribaldo, Simonetta; Hatzenpichler, Roland; Hugenholtz, Philip; Kämpfer, Peter; Konstantinidis, Konstantinos T.; et al. "Author Correction: Roadmap for naming uncultivated Archaea and Bacteria". Nature Microbiology 6 1 (2020): 136-136. http://dx.doi.org/10.1038/s41564-020-00827-2.
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  85. Karim Hayoun; Emilie Geersens; Cedric Laczny; Rashi Halder; Carmen Lázaro Sánchez; Abhijit Manna; Françoise Bringel; et al. "Dichloromethane Degradation Pathway from Unsequenced Hyphomicrobium sp. MC8b Rapidly Explored by Pan-Proteomics". Microorganisms (2020): https://www.mdpi.com/2076-2607/8/12/1876.
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  86. Duport, Catherine; Rousset, Ludivine; Alpha-Bazin, Béatrice; Armengaud, Jean. "Bacillus cereus Decreases NHE and CLO Exotoxin Synthesis to Maintain Appropriate Proteome Dynamics During Growth at Low Temperature". Toxins 12 10 (2020): 645. http://dx.doi.org/10.3390/toxins12100645.
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  87. Karim Hayoun; Olivier Pible; Pauline Petit; François Allain; Virginie Jouffret; Karen Culotta; Corinne Rivasseau; Jean Armengaud; Béatrice Alpha-Bazin. "Proteotyping Environmental Microorganisms by Phylopeptidomics: Case Study Screening Water from a Radioactive Material Storage Pool". Microorganisms (2020): https://doi.org/10.3390/microorganisms8101525.
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  88. Rousset, Ludivine; Alpha-Bazin, Béatrice; Château, Alice; Armengaud, Jean; Clavel, Thierry; Berge, Odile; Duport, Catherine; Jean, Armengaud. "Groundwater promotes emergence of asporogenic mutants of emetic Bacillus cereus". Environmental Microbiology 22 12 (2020): 5248-5264. http://dx.doi.org/10.1111/1462-2920.15203.
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  89. Uroz, Stéphane; Picard, Laura; Turpault, Marie-Pierre; Auer, Lucas; Armengaud, Jean; Oger, Phil; Jean, Armengaud. "Dual transcriptomics and proteomics analyses of the early stage of interaction between Caballeronia mineralivorans PML1 (12) and mineral". Environmental Microbiology 22 9 (2020): 3838-3862. http://dx.doi.org/10.1111/1462-2920.15159.
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  90. Dubberstein, Danielly; Lidon, Fernando C.; Rodrigues, Ana P.; Semedo, José N.; Marques, Isabel; Rodrigues, Weverton P.; Gouveia, Duarte; et al. "Resilient and Sensitive Key Points of the Photosynthetic Machinery of Coffea spp. to the Single and Superimposed Exposure to Severe Drought and Heat Stresses". Frontiers in Plant Science 11 (2020): http://dx.doi.org/10.3389/fpls.2020.01049.
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  91. Anastasi, Cyril; Rousselle, Patricia; Talantikite, Maya; Tessier, Agnès; Cluzel, Caroline; Bachmann, Alice; Mariano, Natacha; et al. "BMP-1 disrupts cell adhesion and enhances TGF-ß activation through cleavage of the matricellular protein thrombospondin-1". Science Signaling 13 639 (2020): http://dx.doi.org/10.1126/scisignal.aba3880.
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  92. Jean, Armengaud. "The proteomics contribution to the counter-bioterrorism toolbox in the post-COVID-19 era.". Expert review of proteomics (2020): https://doi.org/10.1080/14789450.2020.1822745.
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  93. Gouveia, Duarte; Grenga, Lucia; Gaillard, Jean-Charles; Gallais, Fabrice; Bellanger, Laurent; Pible, Olivier; Armengaud, Jean. "Shortlisting SARS-CoV-2 Peptides for Targeted Studies from Experimental Data-Dependent Acquisition Tandem Mass Spectrometry Data". PROTEOMICS 20 14 (2020): 2000107. http://dx.doi.org/10.1002/pmic.202000107.
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  94. Murray, Alison E.; Freudenstein, John; Gribaldo, Simonetta; Hatzenpichler, Roland; Hugenholtz, Philip; Kämpfer, Peter; Konstantinidis, Konstantinos T.; et al. "Roadmap for naming uncultivated Archaea and Bacteria". Nature Microbiology 5 8 (2020): 987-994. http://dx.doi.org/10.1038/s41564-020-0733-x.
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  95. Gouveia, Duarte; Pible, Olivier; Culotta, Karen; Jouffret, Virginie; Geffard, Olivier; Chaumot, Arnaud; Degli-Esposti, Davide; Armengaud, Jean. "Combining proteogenomics and metaproteomics for deep taxonomic and functional characterization of microbiomes from a non-sequenced host". npj Biofilms and Microbiomes 6 1 (2020): http://dx.doi.org/10.1038/s41522-020-0133-2.
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  96. Hardouin, P.; Pible, O.; Marchandin, H.; Chiron, R.; Armengaud, J.; Grenga, L.. "P084 Quick full-range determination of the composition of the cystic fibrosis lung microbiome from sputum by phylopeptidomics". Journal of Cystic Fibrosis 19 (2020): S79. http://dx.doi.org/10.1016/s1569-1993(20)30419-7.
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  97. Armengaud, Jean; Delaunay-Moisan, Agnès; Thuret, Jean-Yves; Anken, Eelco; Acosta-Alvear, Diego; Aragón, Tomás; Arias, Carolina; et al. "The importance of naturally attenuated SARS-CoV -2 in the fight against COVID -19". Environmental Microbiology 22 6 (2020): 1997-2000. http://dx.doi.org/10.1111/1462-2920.15039.
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  98. Struwe, Weston; Emmott, Edward; Bailey, Melanie; Sharon, Michal; Sinz, Andrea; Corrales, Fernando J; Thalassinos, Kostas; et al. "The COVID-19 MS Coalition—accelerating diagnostics, prognostics, and treatment". The Lancet 395 10239 (2020): 1761-1762. http://dx.doi.org/10.1016/s0140-6736(20)31211-3.
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  99. Díaz-Cárdenas, Carolina; Rojas, Laura Yinneth; Fiorentino, Susana; Cala, Monica P.; Díaz, Jorge I; Ramos, Freddy A.; Armengaud, Jean; Restrepo, Silvia; Baena, Sandra. "Bioactive Potential of Extracts of Labrenzia aggregata Strain USBA 371, a Halophilic Bacterium Isolated from a Terrestrial Source". Molecules 25 11 (2020): 2546. http://dx.doi.org/10.3390/molecules25112546.
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  100. Cogne, Yannick; Gouveia, Duarte; Chaumot, Arnaud; Degli-Esposti, Davide; Geffard, Olivier; Pible, Olivier; Almunia, Christine; Armengaud, Jean; Jean, Armengaud. "Proteogenomics-Guided Evaluation of RNA-Seq Assembly and Protein Database Construction for Emergent Model Organisms". PROTEOMICS 20 10 (2020): 1900261. http://dx.doi.org/10.1002/pmic.201900261.
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  101. Duarte Gouveia; Lucia Grenga; Olivier Pible; Jean Armengaud. "Quick microbial molecular phenotyping by differential shotgun proteomics". Environmental Microbiology (2020): https://doi.org/10.1111/1462-2920.14975.
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  102. Le Saux, Sarah; Aarrass, Hanna; Lai-Kee-Him, Joséphine; Bron, Patrick; Armengaud, Jean; Miotello, Guylaine; Bertrand-Michel, Justine; et al. "Post-production modifications of murine mesenchymal stem cell (mMSC) derived extracellular vesicles (EVs) and impact on their cellular interaction". Biomaterials 231 (2020): 119675. http://dx.doi.org/10.1016/j.biomaterials.2019.119675.
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  103. Laurent Marichal; Géraldine Klein; Jean Armengaud; Yves Boulard; Stéphane Chédin; Jean Labarre; Serge Pin; Jean-Philippe Renault; Jean-Christophe Aude. "Protein Corona Composition of Silica Nanoparticles in Complex Media: Nanoparticle Size does not Matter". Nanomaterials 10 2 (2020): 240-240. https://doi.org/10.3390/nano10020240.
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  104. Mathilde Biola-Clier; Jean-Charles Gaillard; Thierry Rabilloud; Jean Armengaud; Marie Carriere. "Titanium Dioxide Nanoparticles Alter the Cellular Phosphoproteome in A549 Cells". Nanomaterials 10 2 (2020): 185-185. https://doi.org/10.3390/nano10020185.
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  105. Grenga, Lucia; Gallais, Fabrice; Pible, Olivier; Gaillard, Jean-Charles; Gouveia, Duarte; Batina, Hélène; Bazaline, Niza; et al. "Shotgun proteomics analysis of SARS-CoV-2-infected cells and how it can optimize whole viral particle antigen production for vaccines". Emerging Microbes & Infections 9 1 (2020): 1712-1721. http://dx.doi.org/10.1080/22221751.2020.1791737.
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  106. Lepretre, Maxime; Palos-Ladeiro, Melissa; Faugere, Julien; Almunia, Christine; Lemoine, Jerome; Armengaud, Jean; Geffard, Alain; Salvador, Arnaud. "From shotgun to targeted proteomics: rapid Scout-MRM assay development for monitoring potential immunomarkers in Dreissena polymorpha". Analytical and Bioanalytical Chemistry (2020): https://publons.com/wos-op/publon/33768896/.
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  107. Faugere, Julien; Gouveia, Duarte; Ayciriex, Sophie; Chaumot, Arnaud; Almunia, Christine; Francois, Adeline; Armengaud, Jean; et al. "High-multiplexed monitoring of protein biomarkers in the sentinel Gammarus fossarum by targeted scout-MRM assay, a new vision for ecotoxicoproteomics". Journal of Proteomics (2020): https://publons.com/wos-op/publon/33768904/.
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  108. Lepretre, Maxime; Almunia, Christine; Armengaud, Jean; Le Guernic, Antoine; Salvador, Arnaud; Geffard, Alain; Palos-Ladeiro, Melissa. "Identification of immune-related proteins of Dreissena polymorpha hemocytes and plasma involved in host-microbe interactions by differential proteomics". Scientific Reports (2020): https://publons.com/wos-op/publon/38782673/.
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  109. Hayoun, Karim; Gaillard, Jean-Charles; Pible, Olivier; Alpha-Bazin, Beatrice; Armengaud, Jean. "High-throughput proteotyping of bacterial isolates by double barrel chromatography-tandem mass spectrometry based on microplate paramagnetic beads and phylopeptidomics". Journal of Proteomics (2020): https://publons.com/wos-op/publon/46243552/.
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  110. Gouveia, Duarte; Miotello, Guylaine; Gallais, Fabrice; Gaillard, Jean-Charles; Debroas, Stephanie; Bellanger, Laurent; Lavigne, Jean-Philippe; et al. "Proteotyping SARS-CoV-2 Virus from Nasopharyngeal Swabs: A Proof-of-Concept Focused on a 3 Min Mass Spectrometry Window". Journal of Proteome Research (2020): https://publons.com/wos-op/publon/33264427/.
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  112. Davide Degli Esposti; Christine Almunia; Marc-Antoine Guery; Natacha Koenig; Jean Armengaud; Arnaud Chaumot; Olivier Geffard. "Co-expression network analysis identifies gonad- and embryo-associated protein modules in the sentinel species Gammarus fossarum". Scientific Reports (2019): https://doi.org/10.1038/s41598-019-44203-5.
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  114. Ganter, Sarah; Miotello, Guylaine; Manso-Silván, Lucía; Armengaud, Jean; Tardy, Florence; Gaurivaud, Patrice; Thiaucourt, François. "Proteases as Secreted Exoproteins in Mycoplasmas from Ruminant Lungs and Their Impact on Surface-Exposed Proteins". Applied and Environmental Microbiology 85 23 (2019): http://dx.doi.org/10.1128/aem.01439-19.
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  115. Borcier, Elodie; Artigaud, Sébastien; Gaillard, Jean-Charles; Armengaud, Jean; Charrier, Grégory; Couteau, Jérôme; Receveur, Justine; et al. "Coupling caging and proteomics on the European flounder (Platichthys flesus) to assess the estuarine water quality at micro scale". Science of The Total Environment 695 (2019): 133760. http://dx.doi.org/10.1016/j.scitotenv.2019.133760.
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  116. Ganter, Sarah; Miotello, Guylaine; Manso-Silván, Lucía; Armengaud, Jean; Tardy, Florence; Gaurivaud, Patrice; Thiaucourt, François. "Proteases as Secreted Exoproteins in Mycoplasmas from Ruminant Lungs and Their Impact on Surface-Exposed Proteins". Applied and Environmental Microbiology 85 23 (2019): http://dx.doi.org/10.1128/aem.01439-19.
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  117. Ortet, Philippe; Gallois, Nicolas; Long, Justine; Zirah, Séverine; Berthomieu, Catherine; Armengaud, Jean; Alpha-Bazin, Béatrice; Barakat, Mohamed; Chapon, Virginie. "Complete Genome Sequences of Four Microbacterium Strains Isolated from Metal- and Radionuclide-Rich Soils". Microbiology Resource Announcements 8 42 (2019): http://dx.doi.org/10.1128/mra.00846-19.
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  118. Duport; Alpha-Bazin; Armengaud; Jean, Armengaud. "Advanced Proteomics as a Powerful Tool for Studying Toxins of Human Bacterial Pathogens". Toxins 11 10 (2019): 576. http://dx.doi.org/10.3390/toxins11100576.
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  120. Cogne, Yannick; Degli-Esposti, Davide; Pible, Olivier; Gouveia, Duarte; François, Adeline; Bouchez, Olivier; Eché, Camille; et al. "De novo transcriptomes of 14 gammarid individuals for proteogenomic analysis of seven taxonomic groups". Scientific Data 6 1 (2019): http://dx.doi.org/10.1038/s41597-019-0192-5.
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  122. Jean, Armengaud. "Microbiology and infectious diseases – A wealth of novelty for the clinical laboratory". Clinical Mass Spectrometry 14 (2019): 1-2. http://dx.doi.org/10.1016/j.clinms.2019.04.005.
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  124. Heumüller, Stefanie Elisabeth; Talantikite, Maya; Napoli, Manon; Armengaud, Jean; Mörgelin, Matthias; Hartmann, Ursula; Sengle, Gerhard; et al. "C-terminal proteolysis of the collagen VI a3 chain by BMP-1 and proprotein convertase(s) releases endotrophin in fragments of different sizes". Journal of Biological Chemistry 294 37 (2019): 13769-13780. http://dx.doi.org/10.1074/jbc.ra119.008641.
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  126. Leprêtre, Maxime; Almunia, Christine; Armengaud, Jean; Salvador, Arnaud; Geffard, Alain; Palos-Ladeiro, Mélissa; Jean, Armengaud. "The immune system of the freshwater zebra mussel, Dreissena polymorpha, decrypted by proteogenomics of hemocytes and plasma compartments". Journal of Proteomics 202 (2019): 103366. http://dx.doi.org/10.1016/j.jprot.2019.04.016.
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  127. Béthencourt, Lorine; Boubakri, Hasna; Taib, Najwa; Normand, Philippe; Armengaud, Jean; Fournier, Pascale; Brochier-Armanet, Céline; Herrera-Belaroussi, Aude; Jean, Armengaud. "Comparative genomics and proteogenomics highlight key molecular players involved in Frankia sporulation". Research in Microbiology 170 4-5 (2019): 202-213. http://dx.doi.org/10.1016/j.resmic.2019.04.002.
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  128. Pujic, Petar; Alloisio, Nicole; Fournier, Pascale; Roche, David; Sghaier, Haitham; Miotello, Guylaine; Armengaud, Jean; et al. "Omics of the early molecular dialogue betweenFrankia alniandAlnus glutinosaand the cellulase synton". Environmental Microbiology 21 9 (2019): 3328-3345. http://dx.doi.org/10.1111/1462-2920.14606.
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  129. Gouveia, Duarte; Almunia, Christine; Cogne, Yannick; Pible, Olivier; Degli-Esposti, Davide; Salvador, Arnaud; Cristobal, Susana; et al. "Ecotoxicoproteomics: A decade of progress in our understanding of anthropogenic impact on the environment". Journal of Proteomics 198 (2019): 66-77. http://dx.doi.org/10.1016/j.jprot.2018.12.001.
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  130. Tarrago, Lionel; Grosse, Sandrine; Siponen, Marina I.; Lemaire, David; Alonso, Béatrice; Miotello, Guylaine; Armengaud, Jean; et al. "Rhodobacter sphaeroides methionine sulfoxide reductase P reduces R- and S-diastereomers of methionine sulfoxide from a broad-spectrum of protein substrates". Biochemical Journal 475 23 (2018): 3779-3795. http://dx.doi.org/10.1042/bcj20180706.
    10.1042/bcj20180706
  131. Nicolas Gallois; Laurie Piette; Philippe Ortet; Mohamed Barakat; Justine Long; Catherine Berthomieu; Jean Armengaud; Virginie Chapon; Béatrice Alpha-Bazin. "Proteomics data for characterizing Microbacterium oleivorans A9, an uranium-tolerant actinobacterium isolated near the Chernobyl nuclear power plant". Data in Brief 21 (2018): 1125-1129. https://doi.org/10.1016/j.dib.2018.10.136.
    10.1016/j.dib.2018.10.136
  132. Mappa, Charlotte; Pible, Olivier; Armengaud, Jean; Alpha-Bazin, Béatrice; Jean, Armengaud. "Assessing the ratio of Bacillus spores and vegetative cells by shotgun proteomics". Environmental Science and Pollution Research 28 20 (2018): 25107-25115. http://dx.doi.org/10.1007/s11356-018-3341-z.
    10.1007/s11356-018-3341-z
  133. Thiaucourt, François; Pible, Olivier; Miotello, Guylaine; Nwankpa, Nick; Armengaud, Jean; Jean, Armengaud. "Improving Quality Control of Contagious Caprine Pleuropneumonia Vaccine with Tandem Mass Spectrometry". PROTEOMICS 18 17 (2018): 1800088. http://dx.doi.org/10.1002/pmic.201800088.
    10.1002/pmic.201800088
  134. Rascol, Estelle; Pisani, Cédric; Dorandeu, Christophe; Nyalosaso, Jeff; Charnay, Clarence; Daurat, Morgane; Silva, Afitz; et al. "Biosafety of Mesoporous Silica Nanoparticles". Biomimetics 3 3 (2018): 22. http://dx.doi.org/10.3390/biomimetics3030022.
    10.3390/biomimetics3030022
  135. Trapp, Judith; Gouveia, Duarte; Almunia, Christine; Pible, Olivier; Degli Esposti, Davide; Gaillard, Jean-Charles; Chaumot, Arnaud; et al. "Digging Deeper Into the Pyriproxyfen-Response of the Amphipod Gammarus fossarum With a Next-Generation Ultra-High-Field Orbitrap Analyser: New Perspectives for Environmental Toxicoproteomics". Frontiers in Environmental Science 6 (2018): http://dx.doi.org/10.3389/fenvs.2018.00054.
    10.3389/fenvs.2018.00054
  136. Madeira, Jean-Paul; Alpha-Bazin, Béatrice; Armengaud, Jean; Duport, Catherine. "Time-course proteomics dataset to monitor protein-bound methionine oxidation in Bacillus cereus ATCC 14579". Data in Brief 18 (2018): 394-398. http://dx.doi.org/10.1016/j.dib.2018.03.030.
    10.1016/j.dib.2018.03.030
  137. Marichal, Laurent; Renault, Jean-Philippe; Chédin, Stéphane; Lagniel, Gilles; Klein, Géraldine; Aude, Jean-Christophe; Tellier-Lebegue, Carine; et al. "Importance of Post-translational Modifications in the Interaction of Proteins with Mineral Surfaces: The Case of Arginine Methylation and Silica surfaces". Langmuir 34 18 (2018): 5312-5322. http://dx.doi.org/10.1021/acs.langmuir.8b00752.
    10.1021/acs.langmuir.8b00752
  138. Gallois, Nicolas; Alpha-Bazin, Béatrice; Ortet, Philippe; Barakat, Mohamed; Piette, Laurie; Long, Justine; Berthomieu, Catherine; et al. "Proteogenomic insights into uranium tolerance of a Chernobyl's Microbacterium bacterial isolate". Journal of Proteomics 177 (2018): 148-157. http://dx.doi.org/10.1016/j.jprot.2017.11.021.
    10.1016/j.jprot.2017.11.021
  139. Gouveia, D.; Bonneton, F.; Almunia, C.; Armengaud, J.; Quéau, H.; Degli-Esposti, D.; Geffard, O.; Chaumot, A.; Jean, Armengaud. "Identification, expression, and endocrine-disruption of three ecdysone-responsive genes in the sentinel species Gammarus fossarum". Scientific Reports 8 1 (2018): http://dx.doi.org/10.1038/s41598-018-22235-7.
    10.1038/s41598-018-22235-7
  140. Ghedira, Kais; Harigua-Souiai, Emna; Ben Hamda, Cherif; Fournier, Pascale; Pujic, Petar; Guesmi, Sihem; Guizani, Ikram; et al. "The PEG-responding desiccome of the alder microsymbiont Frankia alni". Scientific Reports 8 1 (2018): http://dx.doi.org/10.1038/s41598-017-18839-0.
    10.1038/s41598-017-18839-0
  141. Gouveia, Duarte; Chaumot, Arnaud; Charnot, Aurore; Almunia, Christine; François, Adeline; Navarro, Lionel; Armengaud, Jean; et al. "Ecotoxico-Proteomics for Aquatic Environmental Monitoring: First in Situ Application of a New Proteomics-Based Multibiomarker Assay Using Caged Amphipods". Environmental Science & Technology 51 22 (2017): 13417-13426. http://dx.doi.org/10.1021/acs.est.7b03736.
    10.1021/acs.est.7b03736
  142. Jean, Armengaud. "In Vino Veritas: An Invitation for Ambitious, Collaborative Proteogenomics Campaigns on Plant and Animal Models.". Proteomics (2017): https://doi.org/10.1002/pmic.201700324.
    10.1002/pmic.201700324
  143. Armengaud, Jean; Pible, Olivier; Gaillard, Jean-Charles; Cian, Amandine; Gantois, Nausicaa; Tan, Kevin S. W.; Chabé, Magali; Viscogliosi, Eric; Jean, Armengaud. "Proteogenomic Insights into the Intestinal Parasite Blastocystis sp. Subtype 4 Isolate WR1". PROTEOMICS 17 21 (2017): 1700211. http://dx.doi.org/10.1002/pmic.201700211.
    10.1002/pmic.201700211
  144. Miotello, Guylaine; Ktari, Amir; Gueddou, Abdellatif; Nouioui, Imen; Ghodhbane-Gtari, Faten; Armengaud, Jean; Gtari, Maher; Jean, Armengaud. "Proteogenomics data for deciphering Frankia coriariae interactions with root exudates from three host plants". Data in Brief 14 (2017): 73-76. http://dx.doi.org/10.1016/j.dib.2017.07.009.
    10.1016/j.dib.2017.07.009
  145. Gouveia, D.; Chaumot, A.; Charnot, A.; Queau, H.; Armengaud, J.; Almunia, C.; Salvador, A.; Geffard, O.; Jean, Armengaud. "Assessing the relevance of a multiplexed methodology for proteomic biomarker measurement in the invertebrate species Gammarus fossarum: A physiological and ecotoxicological study". Aquatic Toxicology 190 (2017): 199-209. http://dx.doi.org/10.1016/j.aquatox.2017.07.007.
    10.1016/j.aquatox.2017.07.007
  146. Pisani, Cédric; Rascol, Estelle; Dorandeu, Christophe; Gaillard, Jean-Charles; Charnay, Clarence; Guari, Yannick; Chopineau, Joël; et al. "The species origin of the serum in the culture medium influences the in vitro toxicity of silica nanoparticles to HepG2 cells". PLOS ONE 12 8 (2017): e0182906. http://dx.doi.org/10.1371/journal.pone.0182906.
    10.1371/journal.pone.0182906
  147. Madeira, Jean-Paul; Alpha-Bazin, Béatrice M.; Armengaud, Jean; Duport, Catherine; Jean, Armengaud. "Methionine Residues in Exoproteins and Their Recycling by Methionine Sulfoxide Reductase AB Serve as an Antioxidant Strategy in Bacillus cereus". Frontiers in Microbiology 8 (2017): http://dx.doi.org/10.3389/fmicb.2017.01342.
    10.3389/fmicb.2017.01342
  148. Christie-Oleza, Joseph A.; Sousoni, Despoina; Lloyd, Matthew; Armengaud, Jean; Scanlan, David J.; Jean, Armengaud. "Nutrient recycling facilitates long-term stability of marine microbial phototroph–heterotroph interactions". Nature Microbiology 2 9 (2017): http://dx.doi.org/10.1038/nmicrobiol.2017.100.
    10.1038/nmicrobiol.2017.100
  149. Balzergue, Coline; Dartevelle, Thibault; Godon, Christian; Laugier, Edith; Meisrimler, Claudia; Teulon, Jean-Marie; Creff, Audrey; et al. "Low phosphate activates STOP1-ALMT1 to rapidly inhibit root cell elongation". Nature Communications 8 1 (2017): http://dx.doi.org/10.1038/ncomms15300.
    10.1038/ncomms15300
  150. Ktari, Amir; Gueddou, Abdellatif; Nouioui, Imen; Miotello, Guylaine; Sarkar, Indrani; Ghodhbane-Gtari, Faten; Sen, Arnab; et al. "Host Plant Compatibility Shapes the Proteogenome of Frankia coriariae". Frontiers in Microbiology 8 (2017): http://dx.doi.org/10.3389/fmicb.2017.00720.
    10.3389/fmicb.2017.00720
  151. Charnot, Aurore; Gouveia, Duarte; Armengaud, Jean; Almunia, Christine; Chaumot, Arnaud; Lemoine, Jérôme; Geffard, Olivier; Salvador, Arnaud; Jean, Armengaud. "Multiplexed assay for protein quantitation in the invertebrate Gammarus fossarum by liquid chromatography coupled to tandem mass spectrometry". Analytical and Bioanalytical Chemistry 409 16 (2017): 3969-3991. http://dx.doi.org/10.1007/s00216-017-0348-0.
    10.1007/s00216-017-0348-0
  152. Blanchard, Laurence; Guérin, Philippe; Roche, David; Cruveiller, Stéphane; Pignol, David; Vallenet, David; Armengaud, Jean; de Groot, Arjan; Jean, Armengaud. "Conservation and diversity of the IrrE/DdrO-controlled radiation response in radiation-resistant Deinococcus bacteria". MicrobiologyOpen 6 4 (2017): e00477. http://dx.doi.org/10.1002/mbo3.477.
    10.1002/mbo3.477
  153. Ortet, Philippe; Gallois, Nicolas; Piette, Laurie; Long, Justine; Berthomieu, Catherine; Armengaud, Jean; Barakat, Mohamed; Chapon, Virginie; Jean, Armengaud. "Draft Genome Sequence of Microbacterium oleivorans Strain A9, a Bacterium Isolated from Chernobyl Radionuclide-Contaminated Soil". Genome Announcements 5 14 (2017): http://dx.doi.org/10.1128/genomea.00092-17.
    10.1128/genomea.00092-17
  154. Jean, Armengaud. "Defining Diagnostic Biomarkers Using Shotgun Proteomics and MALDI-TOF Mass Spectrometry.". Methods in molecular biology (Clifton, N.J.) (2017): https://doi.org/10.1007/978-1-4939-7037-7_6.
    10.1007/978-1-4939-7037-7_6
  155. Jean, Armengaud. "Striking against bioterrorism with advanced proteomics and reference methods.". Proteomics (2017): https://doi.org/10.1002/pmic.201600412.
    10.1002/pmic.201600412
  156. Jean, Armengaud. "Exoproteomics of Pathogens: Analysis of Toxins and Other Virulence Factors by Proteomics.". Methods in enzymology (2017): https://doi.org/10.1016/bs.mie.2016.09.033.
    10.1016/bs.mie.2016.09.033
  157. Samson, Camille; Celli, Florian; Hendriks, Kitty; Zinke, Maximilian; Essawy, Nada; Herrada, Isaline; Arteni, Ana-Andreea; et al. "Emerin self-assembly mechanism: role of the LEM domain". The FEBS Journal 284 2 (2017): 338-352. http://dx.doi.org/10.1111/febs.13983.
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  158. Pisani, Cédric; Gaillard, Jean-Charles; Odorico, Michaël; Nyalosaso, Jeff L.; Charnay, Clarence; Guari, Yannick; Chopineau, Joël; et al. "The timeline of corona formation around silica nanocarriers highlights the role of the protein interactome". Nanoscale 9 5 (2017): 1840-1851. http://dx.doi.org/10.1039/c6nr04765c.
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  159. Pisani, C.; Gaillard, J. C.; Dorandeu, C.; Charnay, C.; Guari, Y.; Chopineau, J.; Devoisselle, J. M.; et al. "Experimental separation steps influence the protein content of corona around mesoporous silica nanoparticles". Nanoscale 9 18 (2017): 5769-5772. http://dx.doi.org/10.1039/c7nr01654a.
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  160. Didier, Romain; Morice, Marie Claude; Barragan, Paul; Noryani, Arif A. L.; Noor, Hussam A.; Majwal, Talib; Hovasse, Thomas; et al. "6-Versus 24-Month Dual Antiplatelet Therapy After Implantation of Drug-Eluting Stents in Patients Nonresistant to Aspirin Final Results of the ITALIC Trial (Is There a Life for DES After Discontinuation of Clopidogrel)". JACC: Cardiovascular Interventions (2017): https://publons.com/wos-op/publon/35054558/.
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  161. Klein, Géraldine; Mathé, Christelle; Biola-Clier, Mathilde; Devineau, Stéphanie; Drouineau, Emilie; Hatem, Elie; Marichal, Laurent; et al. "RNA-binding proteins are a major target of silica nanoparticles in cell extracts". Nanotoxicology 10 10 (2016): 1555-1564. http://dx.doi.org/10.1080/17435390.2016.1244299.
    10.1080/17435390.2016.1244299
  162. Jean, Armengaud. "Reannotation of Genomes by Means of Proteomics Data.". Methods in enzymology (2016): https://doi.org/10.1016/bs.mie.2016.09.019.
    10.1016/bs.mie.2016.09.019
  163. Barbier, Ewa; Lagorce, Arnaud; Hachemi, Amine; Dutertre, Murielle; Gorlas, Aurore; Morand, Lucie; Saint-Pierre, Christine; et al. "Oxidative DNA Damage and Repair in the Radioresistant Archaeon Thermococcus gammatolerans". Chemical Research in Toxicology 29 11 (2016): 1796-1809. http://dx.doi.org/10.1021/acs.chemrestox.6b00128.
    10.1021/acs.chemrestox.6b00128
  164. Trapp, Judith; Gaillard, Jean-Charles; Chaumot, Arnaud; Geffard, Olivier; Pible, Olivier; Armengaud, Jean; Jean, Armengaud. "Ovary and embryo proteogenomic dataset revealing diversity of vitellogenins in the crustacean Gammarus fossarum". Data in Brief 8 (2016): 1259-1262. http://dx.doi.org/10.1016/j.dib.2016.07.045.
    10.1016/j.dib.2016.07.045
  165. Madeira, Jean-Paul; Alpha-Bazin, Béatrice; Armengaud, Jean; Omer, Hélène; Duport, Catherine. "Proteome data to explore the impact of pBClin15 on Bacillus cereus ATCC 14579". Data in Brief 8 (2016): 1243-1246. http://dx.doi.org/10.1016/j.dib.2016.07.042.
    10.1016/j.dib.2016.07.042
  166. Trapp, Judith; Armengaud, Jean; Gaillard, Jean-Charles; Pible, Olivier; Chaumot, Arnaud; Geffard, Olivier; Jean, Armengaud. "High-throughput proteome dynamics for discovery of key proteins in sentinel species: Unsuspected vitellogenins diversity in the crustacean Gammarus fossarum". Journal of Proteomics 146 (2016): 207-214. http://dx.doi.org/10.1016/j.jprot.2016.07.007.
    10.1016/j.jprot.2016.07.007
  167. Madeira, Jean-Paul; Omer, Hélène; Alpha-Bazin, Béatrice; Armengaud, Jean; Duport, Catherine; Jean, Armengaud. "Deciphering the interactions between the Bacillus cereus linear plasmid, pBClin15, and its host by high-throughput comparative proteomics". Journal of Proteomics 146 (2016): 25-33. http://dx.doi.org/10.1016/j.jprot.2016.06.022.
    10.1016/j.jprot.2016.06.022
  168. Zhu, Xun; Xie, Shangbo; Armengaud, Jean; Xie, Wen; Guo, Zhaojiang; Kang, Shi; Wu, Qingjun; et al. "Tissue-specific Proteogenomic Analysis of Plutella xylostella Larval Midgut Using a Multialgorithm Pipeline". Molecular & Cellular Proteomics 15 6 (2016): 1791-1807. http://dx.doi.org/10.1074/mcp.m115.050989.
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  169. Zhang, Sheng-Da; Santini, Claire-Lise; Zhang, Wei-Jia; Barbe, Valérie; Mangenot, Sophie; Guyomar, Charlotte; Garel, Marc; et al. "Genomic and physiological analysis reveals versatile metabolic capacity of deep-sea Photobacterium phosphoreum ANT-2200". Extremophiles 20 3 (2016): 301-310. http://dx.doi.org/10.1007/s00792-016-0822-1.
    10.1007/s00792-016-0822-1
  170. Jean, Armengaud. "Next-generation proteomics faces new challenges in environmental biotechnology.". Current opinion in biotechnology (2016): http://europepmc.org/abstract/med/26950175.
    10.1016/j.copbio.2016.02.025
  171. Duriez, Elodie; Armengaud, Jean; Fenaille, François; Ezan, Eric; Jean, Armengaud. "Mass spectrometry for the detection of bioterrorism agents: from environmental to clinical applications". Journal of Mass Spectrometry 51 3 (2016): 183-199. http://dx.doi.org/10.1002/jms.3747.
    10.1002/jms.3747
  172. Devigne, Alice; Guérin, Philippe; Lisboa, Johnny; Quevillon-Cheruel, Sophie; Armengaud, Jean; Sommer, Suzanne; Bouthier de la Tour, Claire; Servant, Pascale; Jean, Armengaud. "PprA Protein Is Involved in Chromosome Segregation via Its Physical and Functional Interaction with DNA Gyrase in Irradiated Deinococcus radiodurans Bacteria". mSphere 1 1 (2016): http://dx.doi.org/10.1128/msphere.00036-15.
    10.1128/msphere.00036-15
  173. Kish, Adrienne; Gaillard, Jean-Charles; Armengaud, Jean; Elie, Christiane; Jean, Armengaud. "Post-translational methylations of the archaeal Mre11:Rad50 complex throughout the DNA damage response". Molecular Microbiology 100 2 (2016): 362-378. http://dx.doi.org/10.1111/mmi.13322.
    10.1111/mmi.13322
  174. Locard-Paulet, Marie; Pible, Olivier; Gonzalez de Peredo, Anne; Alpha-Bazin, Béatrice; Almunia, Christine; Burlet-Schiltz, Odile; Armengaud, Jean; Jean, Armengaud. "Clinical implications of recent advances in proteogenomics". Expert Review of Proteomics 13 2 (2016): 185-199. http://dx.doi.org/10.1586/14789450.2016.1132169.
    10.1586/14789450.2016.1132169
  175. Abby, Emilie; Tourpin, Sophie; Ribeiro, Jonathan; Daniel, Katrin; Messiaen, Sébastien; Moison, Delphine; Guerquin, Justine; et al. "Implementation of meiosis prophase I programme requires a conserved retinoid-independent stabilizer of meiotic transcripts". Nature Communications 7 1 (2016): http://dx.doi.org/10.1038/ncomms10324.
    10.1038/ncomms10324
  176. Cuenca, María del Sol; Roca, Amalia; Molina-Santiago, Carlos; Duque, Estrella; Armengaud, Jean; Gómez-Garcia, María R.; Ramos, Juan L.. "Understanding butanol tolerance and assimilation in P seudomonas putida BIRD -1: an integrated omics approach". Microbial Biotechnology 9 1 (2016): 100-115. http://dx.doi.org/10.1111/1751-7915.12328.
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  177. Pisani, C.; Gaillard, J.; Odorico, M.; Nyalosaso, J.; Charnay, C.; Guari, Y.; Chopineau, J.; et al. "Corona interactome: A key for deciphering protein adsorption kinetics on silica nanocarriers surface". Toxicology Letters (2016): https://publons.com/wos-op/publon/3425726/.
    10.1016/J.TOXLET.2016.06.1980
  178. Bouthier de la Tour, Claire; Armengaud, Jean; Dulermo, Rémi; Blanchard, Laurence; Devigne, Alice; de Groot, Arjan; Ludanyi, Monika; Sommer, Suzanne; Jean, Armengaud. "The abundant and essential HU proteins in Deinococcus deserti and Deinococcus radiodurans are translated from leaderless mRNA". Microbiology 161 12 (2015): 2410-2422. http://dx.doi.org/10.1099/mic.0.000186.
    10.1099/mic.0.000186
  179. Trapp, Judith; Almunia, Christine; Gaillard, Jean-Charles; Pible, Olivier; Chaumot, Arnaud; Geffard, Olivier; Armengaud, Jean; Jean, Armengaud. "Data for comparative proteomics of ovaries from five non-model, crustacean amphipods". Data in Brief 5 (2015): 1-6. http://dx.doi.org/10.1016/j.dib.2015.07.037.
    10.1016/j.dib.2015.07.037
  180. Christie-Oleza, Joseph A.; Armengaud, Jean; Jean, Armengaud. "Proteomics of theRoseobacterclade, a window to the marine microbiology landscape". PROTEOMICS 15 23-24 (2015): 3928-3942. http://dx.doi.org/10.1002/pmic.201500222.
    10.1002/pmic.201500222
  181. Omer, Hélène; Alpha-Bazin, Béatrice; Brunet, Jean-Luc; Armengaud, Jean; Duport, Catherine; Jean, Armengaud. "Proteomics identifies Bacillus cereus EntD as a pivotal protein for the production of numerous virulence factors". Frontiers in Microbiology 6 (2015): http://dx.doi.org/10.3389/fmicb.2015.01004.
    10.3389/fmicb.2015.01004
  182. Thiaville, Patrick C.; El Yacoubi, Basma; Köhrer, Caroline; Thiaville, Jennifer J.; Deutsch, Chris; Iwata-Reuyl, Dirk; Bacusmo, Jo Marie; et al. "Essentiality of threonylcarbamoyladenosine (t6A), a universal tRNA modification, in bacteria". Molecular Microbiology 98 6 (2015): 1199-1221. http://dx.doi.org/10.1111/mmi.13209.
    10.1111/mmi.13209
  183. Jagtap, Pratik; Griffin, Tim; Armengaud, Jean; Jean, Armengaud. "Microbiomes - Embracing complexity". PROTEOMICS 15 20 (2015): 3405-3406. http://dx.doi.org/10.1002/pmic.201570183.
    10.1002/pmic.201570183
  184. Jean, Armengaud. "Power of positive thinking in quantitative proteomics.". Proteomics (2015): http://europepmc.org/abstract/med/26227558.
    10.1002/pmic.201500307
  185. Rubiano-Labrador, Carolina; Bland, Céline; Miotello, Guylaine; Armengaud, Jean; Baena, Sandra; Jean, Armengaud. "Salt Stress Induced Changes in the Exoproteome of the Halotolerant Bacterium Tistlia consotensis Deciphered by Proteogenomics". PLOS ONE 10 8 (2015): e0135065. http://dx.doi.org/10.1371/journal.pone.0135065.
    10.1371/journal.pone.0135065
  186. Trapp J; Almunia C; Gaillard JC; Pible O; Chaumot A; Geffard O; Armengaud J. "Proteogenomic insights into the core-proteome of female reproductive tissues from crustacean amphipods.". (2015): http://europepmc.org/abstract/med/26170043.
    10.1016/j.jprot.2015.06.017
  187. Pible O; Armengaud J. "Improving the quality of genome, protein sequence, and taxonomy databases: a prerequisite for microbiome meta-omics 2.0.". (2015): http://europepmc.org/abstract/med/26038180.
    10.1002/pmic.201500104
  188. Sghaier H; Hezbri K; Ghodhbane-Gtari F; Pujic P; Sen A; Daffonchio D; Boudabous A; et al. "Stone-dwelling actinobacteria Blastococcus saxobsidens, Modestobacter marinus and Geodermatophilus obscurus proteogenomes.". (2015): http://europepmc.org/abstract/med/26125681.
    10.1038/ismej.2015.108
  189. Christie-Oleza JA; Armengaud J; Guerin P; Scanlan DJ. "Functional distinctness in the exoproteomes of marine Synechococcus.". (2015): http://europepmc.org/abstract/med/25727668.
    10.1111/1462-2920.12822
  190. Christie-Oleza JA; Scanlan DJ; Armengaud J. ""You produce while I clean up", a strategy revealed by exoproteomics during Synechococcus-Roseobacter interactions.". (2015): http://europepmc.org/abstract/med/25728650.
    10.1002/pmic.201400562
  191. Yang YS; Fernandez B; Lagorce A; Aloin V; De Guillen KM; Boyer JB; Dedieu A; et al. "Prioritizing targets for structural biology through the lens of proteomics: the archaeal protein TGAM_1934 from Thermococcus gammatolerans.". (2015): http://europepmc.org/abstract/med/25359407.
    10.1002/pmic.201300535
  192. Trapp J; Armengaud J; Pible O; Gaillard JC; Abbaci K; Habtoul Y; Chaumot A; Geffard O. "Proteomic investigation of male Gammarus fossarum, a freshwater crustacean, in response to endocrine disruptors.". (2015): http://europepmc.org/abstract/med/25363278.
    10.1021/pr500984z
  193. Madeira JP; Alpha-Bazin B; Armengaud J; Duport C. "Time dynamics of the Bacillus cereus exoproteome are shaped by cellular oxidation.". (2015): http://europepmc.org/abstract/med/25954265.
    10.3389/fmicb.2015.00342
  194. Pisani C; Gaillard JC; Nouvel V; Odorico M; Armengaud J; Prat O. "High-throughput, quantitative assessment of the effects of low-dose silica nanoparticles on lung cells: grasping complex toxicity with a great depth of field.". (2015): http://europepmc.org/abstract/med/25895662.
    10.1186/s12864-015-1521-5
  195. Gilard, Martine; Barragan, Paul; Noryani, Arif A. L.; Noor, Hussam A.; Majwal, Talib; Hovasse, Thomas; Castellant, Philippe; et al. "6-Versus 24-Month Dual Antiplatelet Therapy After Implantation of Drug-Eluting Stents in Patients Nonresistant to Aspirin The Randomized, Multicenter ITALIC Trial". JACC: Journal of the American College of Cardiology (2015): https://publons.com/wos-op/publon/6439440/.
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  196. Pisani, C.; Gaillard, J. -C.; Nouvel, V.; Odorico, M.; Armengaud, J.; Prat, O.. "High-throughput, quantitative assessment of the effects of low-dose silica nanoparticles on lung cells: Grasping complex toxicity with a great depth of field". Toxicology Letters (2015): https://publons.com/wos-op/publon/56932099/.
    10.1016/J.TOXLET.2015.08.678
  197. Omer, Helene; Alpha-Bazin, Beatrice; Brunet, Jean-Luc; Armengaud, Jean; Duport, Catherine. "Proteomics identifies Bacillus cereus EntD as a pivotal protein for the production of numerous virulence factors". Frontiers in Microbiology (2015): https://publons.com/wos-op/publon/472174/.
    10.3189/FMICB.2015.01004
  198. Trapp J; Armengaud J; Salvador A; Chaumot A; Geffard O. "Next-generation proteomics: toward customized biomarkers for environmental biomonitoring.". (2014): http://europepmc.org/abstract/med/25345346.
    10.1021/es501673s
  199. Trapp J; Geffard O; Imbert G; Gaillard JC; Davin AH; Chaumot A; Armengaud J. "Proteogenomics of Gammarus fossarum to document the reproductive system of amphipods.". (2014): http://europepmc.org/abstract/med/25293947.
    10.1074/mcp.M114.038851
  200. Hartmann EM; Armengaud J. "N-terminomics and proteogenomics, getting off to a good start.". (2014): http://europepmc.org/abstract/med/25116052.
    10.1002/pmic.201400157
  201. Hartmann EM; Durighello E; Pible O; Nogales B; Beltrametti F; Bosch R; Christie-Oleza JA; Armengaud J. "Proteomics meets blue biotechnology: a wealth of novelties and opportunities.". (2014): http://europepmc.org/abstract/med/24780860.
    10.1016/j.margen.2014.04.003
  202. Durighello E; Bellanger L; Ezan E; Armengaud J. "Proteogenomic biomarkers for identification of Francisella species and subspecies by matrix-assisted laser desorption ionization-time-of-flight mass spectrometry.". (2014): http://europepmc.org/abstract/med/25215633.
    10.1021/ac501840g
  203. Boyer JB; Dedieu A; Armengaud J; Verdié P; Subra G; Martinez J; Enjalbal C. "N- and O-acetylation of threonine residues in the context of proteomics.". (2014): http://europepmc.org/abstract/med/24937263.
    10.1016/j.jprot.2014.06.005
  204. Olivier Pible; Erica M. Hartmann; Gilles Imbert; Jean Armengaud. "The importance of recognizing and reporting sequence database contamination for proteomics". EuPA Open Proteomics 3 (2014): 246-249. http://dx.doi.org/10.1016/j.euprot.2014.04.001.
    10.1016/j.euprot.2014.04.001
  205. Armengaud J; Trapp J; Pible O; Geffard O; Chaumot A; Hartmann EM. "Non-model organisms, a species endangered by proteogenomics.". (2014): http://europepmc.org/abstract/med/24440519.
    10.1016/j.jprot.2014.01.007
  206. Berta P; Bourg G; Hanna N; Saadeh B; Armengaud J; Patey G; O'Callaghan D. "The Brucella suis IbpA heat-shock chaperone is not required for virulence or for expression of the VirB type IV secretion system VirB8 protein.". (2014): http://europepmc.org/abstract/med/24517122.
    10.1111/lam.12231
  207. Bland C; Hartmann EM; Christie-Oleza JA; Fernandez B; Armengaud J; C. Bland; E. M. Hartmann; et al. "N-Terminal-oriented proteogenomics of the marine bacterium roseobacter denitrificans Och114 using N-Succinimidyloxycarbonylmethyl)tris(2,4,6-trimethoxyphenyl)phosphonium bromide (TMPP) labeling and diagonal chromatography.". Molecular & Cellular Proteomics 13 5 (2014): 1369-1381. http://europepmc.org/abstract/med/24536027.
    10.1074/mcp.O113.032854
  208. de Groot A; Roche D; Fernandez B; Ludanyi M; Cruveiller S; Pignol D; Vallenet D; Armengaud J; Blanchard L. "RNA sequencing and proteogenomics reveal the importance of leaderless mRNAs in the radiation-tolerant bacterium Deinococcus deserti.". (2014): http://europepmc.org/abstract/med/24723731.
    10.1093/gbe/evu069
  209. Bland C; Bellanger L; Armengaud J. "Magnetic immunoaffinity enrichment for selective capture and MS/MS analysis of N-terminal-TMPP-labeled peptides.". (2014): http://europepmc.org/abstract/med/24313271.
    10.1021/pr400774z
  210. Rubiano-Labrador C; Bland C; Miotello G; Guérin P; Pible O; Baena S; Armengaud J. "Proteogenomic insights into salt tolerance by a halotolerant alpha-proteobacterium isolated from an Andean saline spring.". (2014): http://europepmc.org/abstract/med/23727365.
    10.1016/j.jprot.2013.05.020
  211. Hartmann EM; Armengaud J. "Shotgun proteomics suggests involvement of additional enzymes in dioxin degradation by Sphingomonas wittichii RW1.". (2014): http://europepmc.org/abstract/med/24118890.
    10.1111/1462-2920.12264
  212. Hartmann EM; Allain F; Gaillard JC; Pible O; Armengaud J. "Taking the shortcut for high-throughput shotgun proteomic analysis of bacteria.". (2014): http://europepmc.org/abstract/med/25172287.
    10.1007/978-1-4939-1261-2_16
  213. Pereira S; Malard V; Ravanat JL; Davin AH; Armengaud J; Foray N; Adam-Guillermin C. "Low doses of gamma-irradiation induce an early bystander effect in zebrafish cells which is sufficient to radioprotect cells.". (2014): http://europepmc.org/abstract/med/24667817.
    10.1371/journal.pone.0092974
  214. Durighello E; Christie-Oleza JA; Armengaud J. "Assessing the exoproteome of marine bacteria, lesson from a RTX-toxin abundantly secreted by Phaeobacter strain DSM 17395.". (2014): http://europepmc.org/abstract/med/24586966.
    10.1371/journal.pone.0089691
  215. Laouami S; Clair G; Armengaud J; Duport C. "Proteomic evidences for rex regulation of metabolism in toxin-producing Bacillus cereus ATCC 14579.". (2014): http://europepmc.org/abstract/med/25216269.
    10.1371/journal.pone.0107354
  216. Clair G; Lorphelin A; Armengaud J; Duport C. "OhrRA functions as a redox-responsive system controlling toxinogenesis in Bacillus cereus.". (2013): http://europepmc.org/abstract/med/24184231.
    10.1016/j.jprot.2013.10.024
  217. de la Tour CB; Passot FM; Toueille M; Mirabella B; Guérin P; Blanchard L; Servant P; et al. "Comparative proteomics reveals key proteins recruited at the nucleoid of Deinococcus after irradiation-induced DNA damage.". (2013): http://europepmc.org/abstract/med/24307635.
    10.1002/pmic.201300249
  218. Christie-Oleza JA; Miotello G; Armengaud J. "Proteogenomic definition of biomarkers for the large Roseobacter clade and application for a quick screening of new environmental isolates.". (2013): http://europepmc.org/abstract/med/24044462.
    10.1021/pr400554e
  219. Armengaud J; Hartmann EM; Bland C. "Proteogenomics for environmental microbiology.". (2013): http://europepmc.org/abstract/med/23636904.
    10.1002/pmic.201200576
  220. Suarez S; Ferroni A; Lotz A; Jolley KA; Guérin P; Leto J; Dauphin B; et al. "Ribosomal proteins as biomarkers for bacterial identification by mass spectrometry in the clinical microbiology laboratory.". (2013): http://europepmc.org/abstract/med/23916798.
    10.1016/j.mimet.2013.07.021
  221. Darolles C; Sage N; Armengaud J; Malard V. "In vitro assessment of cobalt oxide particle toxicity: identifying and circumventing interference.". (2013): http://europepmc.org/abstract/med/23624240.
    10.1016/j.tiv.2013.04.008
  222. Bahassou-Benamri R; Davin AH; Gaillard JC; Alonso B; Odorico M; Pible O; Armengaud J; Godon C. "Subcellular localization and interaction network of the mRNA decay activator Pat1 upon UV stress.". (2013): http://europepmc.org/abstract/med/23847025.
    10.1002/yea.2968
  223. Alonso B; Beraud C; Meguellati S; Chen SW; Pellequer JL; Armengaud J; Godon C. "Eukaryotic GPN-loop GTPases paralogs use a dimeric assembly reminiscent of archeal GPN.". (2013): http://europepmc.org/abstract/med/23324351.
    10.4161/cc.23367
  224. Armengaud J. "Microbiology and proteomics, getting the best of both worlds!". (2013): http://europepmc.org/abstract/med/22708953.
    10.1111/j.1462-2920.2012.02811.x
  225. Christie-Oleza JA; Piña-Villalonga JM; Guerin P; Miotello G; Bosch R; Nogales B; Armengaud J. "Shotgun nanoLC-MS/MS proteogenomics to document MALDI-TOF biomarkers for screening new members of the Ruegeria genus.". (2013): http://europepmc.org/abstract/med/22712501.
    10.1111/j.1462-2920.2012.02812.x
  226. Peyrol J; Thizon C; Gaillard JC; Marchetti C; Armengaud J; Rollin-Genetet F. "Multiple phosphorylable sites in the Zaire Ebolavirus nucleoprotein evidenced by high resolution tandem mass spectrometry.". (2013): http://europepmc.org/abstract/med/23068963.
    10.1016/j.jviromet.2012.10.003
  227. Norais C; Servant P; Bouthier-de-la-Tour C; Coureux PD; Ithurbide S; Vannier F; Guerin PP; et al. "The Deinococcus radiodurans DR1245 protein, a DdrB partner homologous to YbjN proteins and reminiscent of type III secretion system chaperones.". (2013): http://europepmc.org/abstract/med/23441204.
    10.1371/journal.pone.0056558
  228. Dedieu A; Sahinovic E; Guérin P; Blanchard L; Fochesato S; Meunier B; de Groot A; Armengaud J. "Major soluble proteome changes in Deinococcus deserti over the earliest stages following gamma-ray irradiation.". (2013): http://europepmc.org/abstract/med/23320389.
    10.1186/1477-5956-11-3
  229. Perche-Letuvée P; Kathirvelu V; Berggren G; Clemancey M; Latour JM; Maurel V; Douki T; et al. "4-Demethylwyosine synthase from Pyrococcus abyssi is a radical-S-adenosyl-L-methionine enzyme with an additional [4Fe-4S](+2) cluster that interacts with the pyruvate co-substrate.". Journal of Biological Chemistry 287 49 (2012): 41174-41185. http://europepmc.org/abstract/med/23043105.
    10.1074/jbc.M112.405019
  230. Suarez-Suarez LY; Brunet-Galmes I; Piña-Villalonga JM; Christie-Oleza JA; Peña A; Bennasar A; Armengaud J; Nogales B; Bosch R. "Draft genome sequence of Citreicella aestuarii strain 357, a member of the Roseobacter clade isolated without xenobiotic pressure from a petroleum-polluted beach.". (2012): http://europepmc.org/abstract/med/22965089.
    10.1128/JB.01261-12
  231. Armengaud J; Christie-Oleza JA; Clair G; Malard V; Duport C. "Exoproteomics: exploring the world around biological systems.". (2012): http://europepmc.org/abstract/med/23194272.
    10.1586/epr.12.52
  232. L. Y. Suarez-Suarez; I. Brunet-Galmes; J. M. Pina-Villalonga; J. A. Christie-Oleza; A. Pena; A. Bennasar; J. Armengaud; B. Nogales; R. Bosch. "Draft Genome Sequence of Citreicella aestuarii Strain 357, a Member of the Roseobacter Clade Isolated without Xenobiotic Pressure from a Petroleum-Polluted Beach". Journal of Bacteriology 194 19 (2012): 5464-5465. http://dx.doi.org/10.1128/jb.01261-12.
    10.1128/jb.01261-12
  233. Clair G; Armengaud J; Duport C. "Restricting fermentative potential by proteome remodeling: an adaptive strategy evidenced in Bacillus cereus.". (2012): http://europepmc.org/abstract/med/22232490.
    10.1074/mcp.M111.013102
  234. Toueille M; Mirabella B; Guérin P; Bouthier de la Tour C; Boisnard S; Nguyen HH; Blanchard L; et al. "A comparative proteomic approach to better define Deinococcus nucleoid specificities.". (2012): http://europepmc.org/abstract/med/22446890.
    10.1016/j.jprot.2012.03.002
  235. Christie-Oleza JA; Piña-Villalonga JM; Bosch R; Nogales B; Armengaud J. "Comparative proteogenomics of twelve Roseobacter exoproteomes reveals different adaptive strategies among these marine bacteria.". (2012): http://europepmc.org/abstract/med/22122883.
    10.1074/mcp.M111.013110
  236. G. Clair; J. Armengaud; C. Duport. "Restricting Fermentative Potential by Proteome Remodeling: AN ADAPTIVE STRATEGY EVIDENCED IN BACILLUS CEREUS". Molecular & Cellular Proteomics 11 6 (2012): M111.013102-M111.013102. http://dx.doi.org/10.1074/mcp.m111.013102.
    10.1074/mcp.m111.013102
  237. Malard V; Chardan L; Roussi S; Darolles C; Sage N; Gaillard JC; Armengaud J. "Analytical constraints for the analysis of human cell line secretomes by shotgun proteomics.". (2012): http://europepmc.org/abstract/med/22079246.
    10.1016/j.jprot.2011.10.025
  238. Christie-Oleza JA; Fernandez B; Nogales B; Bosch R; Armengaud J. "Proteomic insights into the lifestyle of an environmentally relevant marine bacterium.". (2012): http://europepmc.org/abstract/med/21776030.
    10.1038/ismej.2011.86
  239. Christie-Oleza JA; Miotello G; Armengaud J. "High-throughput proteogenomics of Ruegeria pomeroyi: seeding a better genomic annotation for the whole marine Roseobacter clade.". (2012): http://europepmc.org/abstract/med/22336032.
    10.1186/1471-2164-13-73
  240. J. A. Christie-Oleza; J. M. Pina-Villalonga; R. Bosch; B. Nogales; J. Armengaud. "Comparative Proteogenomics of Twelve Roseobacter Exoproteomes Reveals Different Adaptive Strategies Among These Marine Bacteria". Molecular & Cellular Proteomics 11 2 (2011): M111.013110-M111.013110. http://dx.doi.org/10.1074/mcp.m111.013110.
    10.1074/mcp.m111.013110
  241. Béatrice Alonso; Guylaine Chaussinand; Jean Armengaud; Christian Godon; Alonso B; Chaussinand G; Armengaud J; Godon C. "A role for GPN-loop GTPase yGPN1 in sister chromatid cohesion". Cell Cycle 10 11 (2011): 1828-1837. http://dx.doi.org/10.4161/cc.10.11.15763.
    10.4161/cc.10.11.15763
  242. Dedieu A; Gaillard JC; Pourcher T; Darrouzet E; Armengaud J. "Revisiting iodination sites in thyroglobulin with an organ-oriented shotgun strategy.". (2011): http://europepmc.org/abstract/med/20978121.
    10.1074/jbc.M110.159483
  243. Ozdemir V; Armengaud J; Dubé L; Aziz RK; Knoppers BM. "Nutriproteomics and Proteogenomics: Cultivating Two Novel Hybrid Fields of Personalized Medicine with Added Societal Value.". (2010): http://europepmc.org/abstract/med/21399751.
    10.2174/187569210793368230
  244. A. Dedieu; J.-C. Gaillard; T. Pourcher; E. Darrouzet; J. Armengaud. "Revisiting Iodination Sites in Thyroglobulin with an Organ-oriented Shotgun Strategy". Journal of Biological Chemistry 286 1 (2010): 259-269. http://dx.doi.org/10.1074/jbc.m110.159483.
    10.1074/jbc.m110.159483
  245. de Crécy-Lagard V; Brochier-Armanet C; Urbonavicius J; Fernandez B; Phillips G; Lyons B; Noma A; et al. "Biosynthesis of wyosine derivatives in tRNA: an ancient and highly diverse pathway in Archaea.". (2010): http://europepmc.org/abstract/med/20382657.
    10.1093/molbev/msq096
  246. V. Malard; N. Sage; P. Gueraud; W. Naudin; M. Floriani; J. Armengaud; E. Quemeneur. "Particulate cobalt and soluble cobalt: Same metal but different toxicities as assessed by cellular biology and innovative proteomic approaches". Toxicology Letters 196 (2010): S305-S305. http://dx.doi.org/10.1016/j.toxlet.2010.03.964.
    10.1016/j.toxlet.2010.03.964
  247. Clair G; Roussi S; Armengaud J; Duport C. "Expanding the known repertoire of virulence factors produced by Bacillus cereus through early secretome profiling in three redox conditions.". (2010): http://europepmc.org/abstract/med/20368289.
    10.1074/mcp.M000027-MCP201
  248. G. Clair; S. Roussi; J. Armengaud; C. Duport. "Expanding the Known Repertoire of Virulence Factors Produced by Bacillus cereus through Early Secretome Profiling in Three Redox Conditions". Molecular & Cellular Proteomics 9 7 (2010): 1486-1498. http://dx.doi.org/10.1074/mcp.m000027-mcp201.
    10.1074/mcp.m000027-mcp201
  249. Baudet M; Ortet P; Gaillard JC; Fernandez B; Guérin P; Enjalbal C; Subra G; et al. "Proteomics-based refinement of Deinococcus deserti genome annotation reveals an unwonted use of non-canonical translation initiation codons.". (2010): http://europepmc.org/abstract/med/19875382.
    10.1074/mcp.M900359-MCP200
  250. Armengaud J. "Proteogenomics and systems biology: quest for the ultimate missing parts.". (2010): http://europepmc.org/abstract/med/20121477.
    10.1586/epr.09.104
  251. Jean Armengaud. "Systems Biology and Synthetic Biology: Understanding Biological Complexity on the Critical Path to Personalized Medicine". CPPM 8 4 (2010): 257-267. http://dx.doi.org/10.2174/187569210793368186.
    10.2174/187569210793368186
  252. Christie-Oleza JA; Armengaud J. "In-depth analysis of exoproteomes from marine bacteria by shotgun liquid chromatography-tandem mass spectrometry: the Ruegeria pomeroyi DSS-3 case-study.". (2010): http://europepmc.org/abstract/med/20948905.
    10.3390/md8082223
  253. M. Baudet; P. Ortet; J.-C. Gaillard; B. Fernandez; P. Guerin; C. Enjalbal; G. Subra; et al. "Proteomics-based Refinement of Deinococcus deserti Genome Annotation Reveals an Unwonted Use of Non-canonical Translation Initiation Codons". Molecular & Cellular Proteomics 9 2 (2009): 415-426. http://dx.doi.org/10.1074/mcp.m900359-mcp200.
    10.1074/mcp.m900359-mcp200
  254. Véronique Malard; Jean-Charles Gaillard; Frédéric Bérenguer; Nicole Sage; Jean Armengaud; Eric Quéméneur. "Novel quantitative proteomic strategies for assessing metals nephrotoxicity in rats". Toxicology Letters 189 (2009): S95-S95. http://dx.doi.org/10.1016/j.toxlet.2009.06.286.
    10.1016/j.toxlet.2009.06.286
  255. Esbelin J; Armengaud J; Zigha A; Duport C. "ResDE-dependent regulation of enterotoxin gene expression in Bacillus cereus: evidence for multiple modes of binding for ResD and interaction with Fnr.". (2009): http://europepmc.org/abstract/med/19395489.
    10.1128/JB.00321-09
  256. Armengaud J. "A perfect genome annotation is within reach with the proteomics and genomics alliance.". (2009): http://europepmc.org/abstract/med/19410500.
    10.1016/j.mib.2009.03.005
  257. J. Esbelin; J. Armengaud; A. Zigha; C. Duport. "ResDE-Dependent Regulation of Enterotoxin Gene Expression in Bacillus cereus: Evidence for Multiple Modes of Binding for ResD and Interaction with Fnr". Journal of Bacteriology (2009):
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  258. de Groot A; Dulermo R; Ortet P; Blanchard L; Guérin P; Fernandez B; Vacherie B; et al. "Alliance of proteomics and genomics to unravel the specificities of Sahara bacterium Deinococcus deserti.". (2009): http://europepmc.org/abstract/med/19370165.
    10.1371/journal.pgen.1000434
  259. Zivanovic Y; Armengaud J; Lagorce A; Leplat C; Guérin P; Dutertre M; Anthouard V; et al. "Genome analysis and genome-wide proteomics of Thermococcus gammatolerans, the most radioresistant organism known amongst the Archaea.". (2009): http://europepmc.org/abstract/med/19558674.
    10.1186/gb-2009-10-6-r70
  260. Esbelin J; Jouanneau Y; Armengaud J; Duport C. "ApoFnr binds as a monomer to promoters regulating the expression of enterotoxin genes of Bacillus cereus.". (2008): http://europepmc.org/abstract/med/18424517.
    10.1128/JB.00336-08
  261. J. Esbelin; Y. Jouanneau; J. Armengaud; C. Duport. "ApoFnr Binds as a Monomer to Promoters Regulating the Expression of Enterotoxin Genes of Bacillus cereus". Journal of Bacteriology 190 12 (2008): 4242-4251. http://dx.doi.org/10.1128/jb.00336-08.
    10.1128/jb.00336-08
  262. Gabant G; Augier J; Armengaud J. "Assessment of solvent residues accessibility using three Sulfo-NHS-biotin reagents in parallel: application to footprint changes of a methyltransferase upon binding its substrate.". (2008): http://europepmc.org/abstract/med/17968972.
    10.1002/jms.1328
  263. Habauzit D; Armengaud J; Roig B; Chopineau J. "Determination of estrogen presence in water by SPR using estrogen receptor dimerization.". (2008): http://europepmc.org/abstract/med/18026938.
    10.1007/s00216-007-1725-x
  264. Gras S; Chaumont V; Fernandez B; Carpentier P; Charrier-Savournin F; Schmitt S; Pineau C; et al. "Structural insights into a new homodimeric self-activated GTPase family.". (2007): http://europepmc.org/abstract/med/17468740.
    10.1038/sj.embor.7400958
  265. Sainz G; Jakoncic J; Sieker LC; Stojanoff V; Sanishvili N; Asso M; Bertrand P; Armengaud J; Jouanneau Y. "Structure of a [2Fe-2S] ferredoxin from Rhodobacter capsulatus likely involved in Fe-S cluster biogenesis and conformational changes observed upon reduction.". (2006): http://europepmc.org/abstract/med/16402206.
    10.1007/s00775-005-0069-2
  266. Urbonavicius J; Armengaud J; Grosjean H. "Identity elements required for enzymatic formation of N2,N2-dimethylguanosine from N2-monomethylated derivative and its possible role in avoiding alternative conformations in archaeal tRNA.". (2006): http://europepmc.org/abstract/med/16434050.
    10.1016/j.jmb.2005.12.087
  267. Gabant G; Auxilien S; Tuszynska I; Locard M; Gajda MJ; Chaussinand G; Fernandez B; et al. "THUMP from archaeal tRNA:m22G10 methyltransferase, a genuine autonomously folding domain.". (2006): http://europepmc.org/abstract/med/16687654.
    10.1093/nar/gkl145
  268. S. Gras; B. Fernandez; V. Chaumont; P. Carpentier; J. Armengaud; D. Housset. "Structure of a PACE protein: PAB0955, first member of new GTPase family". Acta Crystallogr Sect A Found Crystallogr 61 a1 (2005): c498-c498. http://dx.doi.org/10.1107/s0108767305079468.
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  269. Gras S; Fernandez B; Chaumont V; Carpentier P; Armengaud J; Housset D; Stéphanie Gras; et al. "Expression, purification, crystallization and preliminary crystallographic analysis of the PAB0955 gene product.". Acta Cryst Sect F Struct Biol Cryst Commun 61 2 (2005): 208-211. http://europepmc.org/abstract/med/16510996.
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  270. Armengaud J; Dedieu A; Solques O; Pellequer JL; Quemeneur E. "Deciphering structure and topology of conserved COG2042 orphan proteins.". (2005): http://europepmc.org/abstract/med/15701177.
    10.1186/1472-6807-5-3
  271. Armengaud, J; Chaussinand, G; Fernandez, B. "PAB1725 is not what we thought: a contribution from a << post-genomic biochemistry >> program". The FEBS Journal (2005): https://publons.com/wos-op/publon/56932108/.
  272. Armengaud J; Urbonavicius J; Fernandez B; Chaussinand G; Bujnicki JM; Grosjean H. "N2-methylation of guanosine at position 10 in tRNA is catalyzed by a THUMP domain-containing, S-adenosylmethionine-dependent methyltransferase, conserved in Archaea and Eukaryota.". (2004): http://europepmc.org/abstract/med/15210688.
    10.1074/jbc.M403845200
  273. S. Gras; P. Carpentier; B. Fernandez; J. Armengaud; P. Forterre; D. Housset. "Structure of PACE12, an archaebacterial protein with GTPase activity and of unknown biological function". Acta Crystallogr Sect A Found Crystallogr 60 a1 (2004): s127-s127. http://dx.doi.org/10.1107/s0108767304097491.
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  274. J. Armengaud; J. Urbonavicius; B. Fernandez; G. Chaussinand; J. M. Bujnicki; H. Grosjean. "N2-Methylation of Guanosine at Position 10 in tRNA Is Catalyzed by a THUMP Domain-containing, S-Adenosylmethionine-dependent Methyltransferase, Conserved in Archaea and Eukaryota". Journal of Biological Chemistry 279 35 (2004): 37142-37152. http://dx.doi.org/10.1074/jbc.m403845200.
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  275. Armengaud J; Fernandez B; Chaumont V; Rollin-Genetet F; Finet S; Marchetti C; Myllykallio H; et al. "Identification, purification, and characterization of an eukaryotic-like phosphopantetheine adenylyltransferase (coenzyme A biosynthetic pathway) in the hyperthermophilic archaeon Pyrococcus abyssi.". (2003): http://europepmc.org/abstract/med/12756245.
    10.1074/jbc.M301891200
  276. J. Armengaud; B. Fernandez; V. Chaumont; F. Rollin-Genetet; S. Finet; C. Marchetti; H. Myllykallio; et al. "Identification, Purification, and Characterization of an Eukaryotic-like Phosphopantetheine Adenylyltransferase (Coenzyme A Biosynthetic Pathway) in the Hyperthermophilic Archaeon Pyrococcus abyssi". Journal of Biological Chemistry 278 33 (2003): 31078-31087. http://dx.doi.org/10.1074/jbc.m301891200.
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  277. Tropel D; Meyer C; Armengaud J; Jouanneau Y. "Ferredoxin-mediated reactivation of the chlorocatechol 2,3-dioxygenase from Pseudomonas putida GJ31.". (2002): http://europepmc.org/abstract/med/11889489.
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  278. Ugrinova I; Pasheva EA; Armengaud J; Pashev IG. "In vivo acetylation of HMG1 protein enhances its binding affinity to distorted DNA structures.". (2001): http://europepmc.org/abstract/med/11724579.
    10.1021/bi0113364
  279. T. Potrawfke; J. Armengaud; R.-M. Wittich. "Chlorocatechols Substituted at Positions 4 and 5 Are Substrates of the Broad-Spectrum Chlorocatechol 1,2-Dioxygenase of Pseudomonas chlororaphis RW71". Journal of Bacteriology 183 3 (2001): 997-1011. http://dx.doi.org/10.1128/jb.183.3.997-1011.2001.
    10.1128/jb.183.3.997-1011.2001
  280. Jean Armengaud; Germaine Sainz; Yves Jouanneau; Larry C. Sieker; Armengaud J; Sainz G; Jouanneau Y; Sieker LC. "Crystallization and preliminary X-ray diffraction analysis of a [2Fe–2S] ferredoxin (FdVI) from Rhodobacter capsulatus". Acta Crystallogr D Biol Cryst 57 2 (2001): 301-303. http://dx.doi.org/10.1107/s0907444900017832.
    10.1107/s0907444900017832
  281. Potrawfke T; Armengaud J; Wittich RM. "Chlorocatechols substituted at positions 4 and 5 are substrates of the broad-spectrum chlorocatechol 1,2-dioxygenase of Pseudomonas chlororaphis RW71.". (2001): http://europepmc.org/abstract/med/11208799.
    10.1128/JB.183.3.997-1011.2001
  282. Vuilleumier, S; Ucurum, Z; Oelhafen, S; Leisinger, T; Armengaud, J; Wittich, RM; Timmis, KN. "The glutathione S-transferase OrfE3 of the dioxin-degrading bacterium sphingomonas sp RW1 displays maleylpyruvate isomerase activity". Chemico-Biological Interactions (2001): https://publons.com/wos-op/publon/13568882/.
  283. N. Hugo; C. Meyer; J. Armengaud; J. Gaillard; K. N. Timmis; Y. Jouanneau. "Characterization of Three XylT-Like [2Fe-2S] Ferredoxins Associated with Catabolism of Cresols or Naphthalene: Evidence for Their Involvement in Catechol Dioxygenase Reactivation". Journal of Bacteriology 182 19 (2000): 5580-5585. http://dx.doi.org/10.1128/jb.182.19.5580-5585.2000.
    10.1128/jb.182.19.5580-5585.2000
  284. Hugo N; Meyer C; Armengaud J; Gaillard J; Timmis KN; Jouanneau Y. "Characterization of three XylT-like [2Fe-2S] ferredoxins associated with catabolism of cresols or naphthalene: evidence for their involvement in catechol dioxygenase reactivation.". (2000): http://europepmc.org/abstract/med/10986264.
    10.1128/JB.182.19.5580-5585.2000
  285. J. Armengaud; J. Gaillard; K. N. Timmis. "A Second [2Fe-2S] Ferredoxin from Sphingomonas sp. Strain RW1 Can Function as an Electron Donor for the Dioxin Dioxygenase". Journal of Bacteriology 182 8 (2000): 2238-2244. http://dx.doi.org/10.1128/jb.182.8.2238-2244.2000.
    10.1128/jb.182.8.2238-2244.2000
  286. Armengaud J; Gaillard J; Timmis KN. "A second [2Fe-2S] ferredoxin from Sphingomonas sp. Strain RW1 can function as an electron donor for the dioxin dioxygenase.". (2000): http://europepmc.org/abstract/med/10735867.
    10.1128/JB.182.8.2238-2244.2000
  287. Armengaud J; Timmis KN; Wittich RM. "A functional 4-hydroxysalicylate/hydroxyquinol degradative pathway gene cluster is linked to the initial dibenzo-p-dioxin pathway genes in Sphingomonas sp. strain RW1.". (1999): http://europepmc.org/abstract/med/10348858.
  288. Armengaud, J; Timmis, KN; Wittich, RM. "A functional 4-hydroxysalicylate/hydroxyquinol degradative pathway gene cluster is linked to the initial dibenzo-p-dioxin pathway genes in Sphingomonas sp strain RW1". Journal of Bacteriology (1999): https://publons.com/wos-op/publon/56932125/.
    10.1128/JB.181.11.3452-3461.1999
  289. Armengaud J; Happe B; Timmis KN. "Genetic analysis of dioxin dioxygenase of Sphingomonas sp. Strain RW1: catabolic genes dispersed on the genome.". (1998): http://europepmc.org/abstract/med/9683494.
  290. Armengaud J; Timmis KN. "The reductase RedA2 of the multi-component dioxin dioxygenase system of Sphingomonas sp. RW1 is related to class-I cytochrome P450-type reductases.". (1998): http://europepmc.org/abstract/med/9654094.
    10.1046/j.1432-1327.1998.2530437.x
  291. Hugo N; Armengaud J; Gaillard J; Timmis KN; Jouanneau Y. "A novel -2Fe-2S- ferredoxin from Pseudomonas putida mt2 promotes the reductive reactivation of catechol 2,3-dioxygenase.". (1998): http://europepmc.org/abstract/med/9545294.
    10.1074/jbc.273.16.9622
  292. Galinier, M; Boveda, S; Alhabaj, S; Armengaud, J; Cabrol, P; Dongay, B; Massabuau, P; Fauvel, JM; Bounhoure, JP. "Sudden death and chronic cardiac failure". Archives des Maladies du Coeur et des Vaisseaux (1998): https://publons.com/wos-op/publon/56932106/.
  293. Armengaud, J; Happe, B; Timmis, KN. "Genetic analysis of dioxin dioxygenase of Sphingomonas sp. Strain RW1: Catabolic genes dispersed on the genome". Journal of Bacteriology (1998): https://publons.com/wos-op/publon/47348209/.
    10.1128/JB.180.15.3954-3966.1998
  294. Armengaud J; Timmis KN. "Molecular characterization of Fdx1, a putidaredoxin-type [2Fe-2S] ferredoxin able to transfer electrons to the dioxin dioxygenase of Sphingomonas sp. RW1.". (1997): http://europepmc.org/abstract/med/9288905.
    10.1111/j.1432-1033.1997.00833.x
  295. Armengaud J; Meyer C; Jouanneau Y. "A [2Fe-2S] ferredoxin (FdVI) is essential for growth of the photosynthetic bacterium Rhodobacter capsulatus.". (1997): http://europepmc.org/abstract/med/9150228.
  296. Armengaud, J; Meyer, C; Jouanneau, Y. "A [2Fe-2S] ferredoxin (FdVI) is essential for growth of the photosynthetic bacterium Rhodobacter capsulatus". Journal of Bacteriology (1997): https://publons.com/wos-op/publon/56932114/.
    10.1128/JB.179.10.3304-3309.1997
  297. Armengaud, J; Timmis, KN. "Biodegradation of dibenzo-p-dioxin and dibenzofuran by bacteria". Journal of Microbiology (1997): https://publons.com/wos-op/publon/56932115/.
  298. Armengaud J; Gaillard J; Forest E; Jouanneau Y. "Characterization of a 2[4Fe-4S] ferredoxin obtained by chemical insertion of the Fe-S clusters into the apoferredoxin II from Rhodobacter capsulatus.". (1995): http://europepmc.org/abstract/med/7635151.
    10.1111/j.1432-1033.1995.tb20712.x
  299. Armengaud J; Jouanneau Y. "Overexpression in Escherichia coli of the fdxA gene encoding Rhodobacter capsulatus ferredoxin II.". (1995): http://europepmc.org/abstract/med/7606166.
    10.1006/prep.1995.1022
  300. Jouanneau, Y; Hugo, N; Armengaud, J; Naud, I; Meyer, C; Willison, JC. "Electron transport to nitrogenase in the photosynthetic bacterium Rhodobacter capsulatus". Photosynthesis: from Light to Biosphere, Vol Ii (1995): https://publons.com/wos-op/publon/56932107/.
  301. Armengaud J; Meyer C; Jouanneau Y. "Recombinant expression of the fdxD gene of Rhodobacter capsulatus and characterization of its product, a [2Fe-2S] ferredoxin.". (1994): http://europepmc.org/abstract/med/8002946.
  302. ARMENGAUD, J; MEYER, C; JOUANNEAU, Y. "RECOMBINANT EXPRESSION OF THE FDXD GENE OF RHODOBACTER-CAPSULATUS AND CHARACTERIZATION OF ITS PRODUCT, A [2FE-2S] FERREDOXIN". Biochemical Journal (1994): https://publons.com/wos-op/publon/56932119/.
    10.1042/BJ3000413
  303. Armengaud J; Jouanneau Y. "Addition of a class IIS enzyme site in the mutagenic primer to improve two-step PCR-based targeted mutagenesis.". (1993): http://europepmc.org/abstract/med/8415019.
    10.1093/nar/21.18.4424
  304. Armengaud J; de Nuova Perez L; Lemay P; Masson JM. "Production of a full length Tat protein in E. coli and its purification.". (1991): http://europepmc.org/abstract/med/2026253.
    10.1016/0014-5793(91)80467-H
Preprint
  1. Lise Molinelli; Elodie Drula; Jean-Charles Gaillard; David Navarro; Jean Armengaud; Jean-Guy Berrin; Thierry Tron; Lionel Tarrago. "Methionine oxidation of Carbohydrate-Active enZymes during white-rot wood decay". 2023. https://doi.org/10.1101/2023.10.24.563746.
    10.1101/2023.10.24.563746
  2. Jennifer LAURENT; Iwan Le Berre; Jean Armengaud; Senthilkumar Kailasam; Jérôme Couteau; Matthieu Waeles; Stéphane Le Floch; Jean Laroche; Vianney Pichereau. "Integration of Environmental Signatures and -Omics Approaches on the European Flounder to Assess the Health Status of Small-Size Estuarine Systems". 2023. http://dx.doi.org/10.2139/ssrn.4340999.
    10.2139/ssrn.4340999
  3. Maxime Lepretre; Arnaud Chaumot; Rayan Aboud; Nicolas Delorme; Anabelle Espeyte; Arnaud Salvador; Sophie Ayciriex; et al. "Dynamic Multiple Reaction Monitoring of Amphipod Gammarus Fossarum Caeca Expands Molecular Information for Understanding the Impact of Contaminants". 2023. http://dx.doi.org/10.2139/ssrn.4379443.
    10.2139/ssrn.4379443
  4. Clement Baratange; Hugo Baali; Veronique Gaillet; Isabelle Bonnard; Laurence Delahaut; Jean-Charles Gaillard; Dominique Grandjean; et al. "Bioaccumulation and Molecular Effects of Carbamazepine and Methylmercury Co-Exposure in Males of Dreissena Polymorpha". 2023. http://dx.doi.org/10.2139/ssrn.4410854.
    10.2139/ssrn.4410854
  5. Léa Broca-Brisson; Rania Harati; Clémence Disdier; Orsolya Mozner; Romane Gaston-Breton; Auriane Maïza; Narciso Costa; et al. "Deciphering Neuronal Deficit and Protein Profile Changes in Human Brain Organoids from Patients with Creatine Transporter Deficiency". 2023. http://dx.doi.org/10.1101/2023.06.01.543271.
    10.1101/2023.06.01.543271
  6. Aloise Mabondzo; Rania Harati; Léa Broca-Brisson; Anne-Cécile Guyot; Narciso Costa; Francesco Cacciante; Elena Putignano; et al. "Dodecyl Creatine Ester Improves Cognitive Function and Identifies Drivers of Creatine Deficiency". 2022. http://dx.doi.org/10.1101/2022.11.03.514982.
    10.1101/2022.11.03.514982
  7. Yeseul Park; Zohar Eyal; Péter Pekker; Daniel M. Chevrier; Christopher T. Lefèvre; Pascal Arnoux; Jean Armengaud; et al. "Periplasmic bacterial biomineralization of copper sulfide nanoparticles". 2022. http://dx.doi.org/10.26434/chemrxiv-2022-9q05h.
    10.26434/chemrxiv-2022-9q05h
  8. Daniel Sobral; Ana F Fernandes; Atlas Sardoo; Miguel Bernardes; Patrícia Pinto; Helena Santos; João Lagoas-Gomes; et al. "MULTI-OMICS TEMPORAL PROFILING OF AXIAL SPONDYLOARTHRITIS PATIENTS REVEALS AN ASSOCIATION OF THERAPEUTIC RESPONSE TO ADALIMUMAB WITH DISEASE ACTIVITY AND INNATE / ADAPTIVE IMMUNITY". 2022. http://dx.doi.org/10.1101/2022.08.02.22278314.
    10.1101/2022.08.02.22278314
  9. Duarte Gouveia; Guylaine Miotello; Fabrice Gallais; Jean-Charles Gaillard; Stéphanie Debroas; Laurent Bellanger; Jean-Philippe Lavigne; et al. "Proteotyping SARS-CoV-2 virus from nasopharyngeal swabs: a proof-of-concept focused on a 3 min mass spectrometry window". 2020. http://dx.doi.org/10.1101/2020.06.19.161000.
    10.1101/2020.06.19.161000

Other

Dataset
  1. Jean, Armengaud. Proteogenomics annotation of Thermococcus gammatolerans.
Other output
  1. Taxonomical and functional changes in COVID-19 faecal microbiome are related to SARS-CoV-2 faecal load. 2021. Jean Armengaud; Lucia Grenga; Olivier Pible; Guylaine Miotello; Karen Culotta; Sylvie Ruat; Marie-Anne Roncato; et al. https://doi.org/10.21203/rs.3.rs-414136/v1.
    10.21203/rs.3.rs-414136/v1
  2. Critical Assessment of Metaproteome Investigation (CAMPI): a Multi-Lab Comparison of Established Workflows. 2021. Tim Van Den Bossche; Benoit J. Kunath; Kay Schallert; Stephanie S. Schäpe; Paul E. Abraham; Jean Armengaud; Magnus Ø. Arntzen; et al. https://doi.org/10.1101/2021.03.05.433915.
    10.1101/2021.03.05.433915
  3. Shotgun proteomics of SARS-CoV-2 infected cells and its application to the optimisation of whole viral particle antigen production for vaccines. 2020. Grenga L; Gallais F; Pible O; Gaillard J; Gouveia D; Batina H; Bazaline N; et al. http://europepmc.org/abstract/PPR/PPR152259.
    10.1101/2020.04.17.046193
  4. The Rhodobacter sphaeroides methionine sulfoxide reductase MsrP can reduce R- and S-diastereomers of methionine sulfoxide from a broad-spectrum of protein substrates. 2018. Lionel Tarrago; Sandrine Grosse; Marina I. Siponen; David Lemaire; Béatrice Alonso; Guylaine Miotello; Jean Armengaud; et al. https://doi.org/10.1101/243626.
    10.1101/243626
  5. Contributors. 2015. Jean-Claude Amiard; Rachid Amara; Claude Amiard-Triquet; Jean Armengaud; M.J. Bebianno; Brigitte Berthet; Angel Borja; et al. http://dx.doi.org/10.1016/b978-0-12-800949-9.01002-0.
    10.1016/b978-0-12-800949-9.01002-0
  6. Gammarids as Reference Species for Freshwater Monitoring. 2015. Arnaud Chaumot; Olivier Geffard; Jean Armengaud; Lorraine Maltby. http://dx.doi.org/10.1016/b978-0-12-800949-9.00011-5.
    10.1016/b978-0-12-800949-9.00011-5
  7. Proteogenomics for the Enhanced Discovery of Bacterial Biomarkers. 2014. Erica M. Hartmann; Jean Armengaud. http://dx.doi.org/10.1007/978-94-017-9238-7_11.
    10.1007/978-94-017-9238-7_11
  8. Crystal Structure of DR_1245 from Deinococcus radiodurans. 2013. C. Norais; P. Servant; C. Bouthier-de-la-Tour; P.D. Coureux; S. Ithurbide; F. Vannier; P. Guerin; et al. http://dx.doi.org/10.2210/pdb4h5b/pdb.
    10.2210/pdb4h5b/pdb
  9. PAB0955 crystal structure : a GTPase in GDP and Mg bound form from Pyrococcus abyssi (after GTP hydrolysis). 2007. S. Gras; P. Carpentier; J. Armengaud; D. Housset. http://dx.doi.org/10.2210/pdb2oxr/pdb.
    10.2210/pdb2oxr/pdb
  10. PAB0955 crystal structure : a GTPase in GTP-gamma-S bound form from Pyrococcus abyssi. 2006. S. Gras; P. Carpentier; J. Armengaud; D. Housset. http://dx.doi.org/10.2210/pdb1yr7/pdb.
    10.2210/pdb1yr7/pdb
  11. PAB0955 crystal structure : a GTPase in Apo form from Pyrococcus abyssi. 2006. S. Gras; P. Carpentier; J. Armengaud; D. Housset. http://dx.doi.org/10.2210/pdb1yr6/pdb.
    10.2210/pdb1yr6/pdb
  12. PAB0955 crystal structure : a GTPase in GDP and PO4 bound form from Pyrococcus abyssi. 2006. S. Gras; P. Carpentier; J. Armengaud; D. Housset. http://dx.doi.org/10.2210/pdb1yr9/pdb.
    10.2210/pdb1yr9/pdb
  13. PAB0955 crystal structure : a GTPase in GTP bound form from Pyrococcus abyssi. 2006. S. Gras; P. Carpentier; J. Armengaud; D. Housset. http://dx.doi.org/10.2210/pdb1yr8/pdb.
    10.2210/pdb1yr8/pdb
  14. PAB0955 crystal structure : a GTPase in GDP and Mg bound form from Pyrococcus abyssi. 2006. S. Gras; P. Carpentier; J. Armengaud; D. Housset. http://dx.doi.org/10.2210/pdb1yrb/pdb.
    10.2210/pdb1yrb/pdb
  15. PAB0955 crystal structure : a GTPase in GDP bound form from Pyrococcus abyssi. 2006. S. Gras; P. Carpentier; J. Armengaud; D. Housset. http://dx.doi.org/10.2210/pdb1yra/pdb.
    10.2210/pdb1yra/pdb
  16. Ferredoxin-Mediated Reactivation of Catechol Dioxygenase Improves Aromatic Ring Cleavage in Pseudomonads. 1999. Y. Jouanneau; J. Armengaud; N. Hugo; C. Meyer; K. N. Timmis. http://dx.doi.org/10.1007/978-1-4615-4749-5_12.
    10.1007/978-1-4615-4749-5_12
  17. Molecular Genetics of the Degradation of Dioxins by Bacteria. 1998. Jean Armengaud; Kenneth N. Timmis. http://dx.doi.org/10.1007/978-3-662-06068-1_4.
    10.1007/978-3-662-06068-1_4
  18. Electron Transport to Nitrogenase in the Photosynthetic Bacterium Rhodobacter Capsulatus. 1995. Y. Jouanneau; N. Hugo; J. Armengaud; I. Naud; C. Meyer; J. C. Willison. http://dx.doi.org/10.1007/978-94-009-0173-5_417.
    10.1007/978-94-009-0173-5_417