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Dr. Tiago G. Fernandes completed a PhD in Biotechnology in 2009 at Instituto Superior Técnico, in collaboration with the Rensselaer Polytechnic Institute (NY, USA). Currently, he is an Assistant Professor at Instituto Superior Técnico, Universidade de Lisboa, and a Research Scientist at the Institute for Bioengineering and Biosciences, Lisbon, Portugal. In 2020, he held a temporary position as Invited Faculty at the Department of Biomedical Engineering and Wisconsin Institute for Discovery, University of Wisconsin-Madison, WI, USA. He has published over 45 research articles in peer-reviewed scientific journals. He has contributed to 10 book chapters and has edited 2 books. He has received several awards and honors, including the prestigious Malcolm Lilly Award, presented by the European Society of Biochemical Engineering Science to a young researcher working in the field of bio-processing engineering in 2008. His research work is focused on providing an integrated platform that brings together engineering and biology, to accelerate progress towards designing the stem cell fate and its microenvironment. The development of artificial cellular niches for studying the mechanisms that affect human stem cell pluripotency is of foremost importance and represents a major goal of his research. Human pluripotent stem cells (hPSCs) are used as model systems to establish in vitro artificial microenvironments that better mimic the extracellular environment. In addition to the influence of mechanical and matrix-related responses, the effects of microenvironmental conditions (e.g. small molecules and growth factors) have been extensively studied due to their capacity to modulating intracellular pathways. This systems-based approach is expected to contribute for the development of innovative cell culture models that better reflect in vivo function, and the final goal is to generate cells and tissues to advance our understanding of biology and tissue regeneration, which will lead to further development of cell-based therapies. His specific areas of activity include: a) Mechanistic understanding of human organogenesis, through the establishment of in vitro platforms to study the cellular events involved in lineage commitment and further maturation of hPSCs. b) Tissue and organ-based bioassembly, particularly understanding the development of the human central nervous system, with special focus on cerebellar development, using organoids as model systems. c) Understanding the formation of brain microvasculature, particularly the establishment of the neural vascular unit, and ultimately of the blood brain barrier. d) Exploitation of the inherent organogenic capacity of hPSCs to produce complex 3D microtissues through bioassembly, with special focus on definitive endoderm commitment, hepatic cell differentiation and further maturation of liver functions.
Identification

Personal identification

Full name
Tiago Fernandes

Citation names

  • Fernandes, Tiago G.

Author identifiers

Ciência ID
B217-60F0-B33B
ORCID iD
0000-0002-4651-2832

Email addresses

  • tfernandes@tecnico.ulisboa.pt (Professional)

Websites

Knowledge fields

  • Medical and Health Sciences - Medical Biotechnology - Health-Related Biotechnology
  • Engineering and Technology - Industrial Biotechnology - Bioprocessing Technologies
  • Medical and Health Sciences - Medical Biotechnology - Health-Related Biotechnology
  • Medical and Health Sciences - Medical Biotechnology - Technologies Involving the Manipulation of Cells, Tissues, Organs or the Whole Organism
  • Engineering and Technology - Other Engineering and Technologies
  • Medical and Health Sciences - Medical Biotechnology - Biomaterials
  • Engineering and Technology - Medical Engineering - Medical Laboratory Technology

Languages

Language Speaking Reading Writing Listening Peer-review
English Advanced (C1) Advanced (C1) Advanced (C1) Advanced (C1)
French Beginner (A1) Intermediate (B1) Beginner (A1) Beginner (A1)
Education
Degree Classification
2018/02/05
Concluded
Specialization in Systems Biology and Biotechnology, on Coursera (Outros)
Icahn School of Medicine at Mount Sinai, United States
2017/01/28
Concluded
Integrated Analysis in Systems Biology, on Coursera (Outros)
Icahn School of Medicine at Mount Sinai, United States
2016/11/22
Concluded
Dynamical Modeling Methods for Systems Biology, on Coursera (Outros)
Icahn School of Medicine at Mount Sinai, United States
2016/06/20
Concluded
Network Analysis in Systems Biology, on Coursera (Outros)
Icahn School of Medicine at Mount Sinai, United States
2016/03/31
Concluded
Experimental Methods in Systems Biology, on Coursera (Outros)
Icahn School of Medicine at Mount Sinai, United States
2016/01/27
Concluded
Introduction to Systems Biology, on Coursera (Outros)
Icahn School of Medicine at Mount Sinai, United States
2009
Concluded
Biotecnologia (Doutoramento)
Universidade de Lisboa Instituto Superior Técnico, Portugal
"Cell-based microarray systems for stem cell expansion and differentiation" (THESIS/DISSERTATION)
n/a
2006
Concluded
Biotecnologia (Doutoramento)
Major in Sem especialidade
Universidade de Lisboa Instituto Superior Técnico, Portugal
"Cell-based Microarray Systems for Stem Cell Expansiond Differentiaton" (THESIS/DISSERTATION)
2004
Concluded
Engª Biológica (Licenciatura)
Universidade de Lisboa Instituto Superior Técnico, Portugal
"Efeito da diminuição da temperatura de gelificação do gritz de milho na qualidade do mosto e cerveja" (THESIS/DISSERTATION)
15 (in a 20 scale)
Affiliation

Science

Category
Host institution
Employer
2015/01/01 - 2016/12/31 Auxiliary Researcher (Research) Universidade de Lisboa Instituto de Bioengenharia e Biociências, Portugal
2010/01/01 - 2014/12/31 Postdoc (Research) Universidade de Lisboa Instituto de Bioengenharia e Biociências, Portugal
2012 - 2012 Research Trainee (Research) Dublin City University, Ireland
2005/03/01 - 2005/12/31 Research Assistant (Research) Universidade de Lisboa Instituto Superior Técnico, Portugal

Teaching in Higher Education

Category
Host institution
Employer
2017/01/01 - Current Assistant Professor (University Teacher) Universidade de Lisboa Instituto Superior Técnico, Portugal
2020/01 - 2020/09 Visiting Professor (University Teacher) University of Wisconsin-Madison, United States

Others

Category
Host institution
Employer
2006/01/01 - 2009/12/31 PhD Student Universidade de Lisboa Instituto Superior Técnico, Portugal
2006/09/01 - 2008/09/01 Visiting PhD Student Rensselaer Polytechnic Institute, United States
2004/12/01 - 2005/03/01 Trainee Universidade de Lisboa Instituto Superior Técnico, Portugal
2004/03/01 - 2004/10/31 Trainee Sociedade Central de Cervejas, Portugal
Projects

Grant

Designation Funders
2021/01/01 - Current Exploring new therapeutic strategies for Angelman syndrome: A disease modelling approach based on 3D cerebellar organoids derived from patient iPSCs
PMJMCD 2019
Ongoing
2021/01 - 2025/12 Instituto para a Saúde e a Bioeconomia
168280UID
Fundação para a Ciência e a Tecnologia
2017/04 - 2024/03 The DISCOVERIES CENTRE for REGENERATIVE and PRECISION MEDICINE
H2020-WIDESPREAD-01-2016-2017-TeamingPhase2
Researcher
European Commission
2021/01 - 2023/12 RNA mis-splicing in hypertrophic cardiomyopathy: opportunities for diagnosis and therapy
HR20-00322
Researcher
Caixabank SA
2019/01 - 2019/12 Instituto de Bioengenharia e Biociências
154778UID
Fundação para a Ciência e a Tecnologia
2009/04 - 2012/06 Materiais e sistemas inteligentes para libertação controlada de moléculas bioactivas, expansão celular e monitorização de ambientes celulares.
83907PRJ
Fundação para a Ciência e a Tecnologia

Contract

Designation Funders
2021/01/01 - 2025/12/31 Institute for Health and Bioeconomy
LA/P/0140/2020
Universidade de Lisboa Instituto de Bioengenharia e Biociências, Portugal

Universidade Nova de Lisboa, Portugal

Rede de Química e Tecnologia Laboratório Associado para a Química Verde, Portugal

Unidade de Ciências Biomoleculares Aplicadas, Portugal

Associação do Instituto Superior Técnico para a Investigação e Desenvolvimento, Portugal

INESC Microsistemas e Nanotecnologias, Portugal

Universidade Nova de Lisboa Associação para a Inovação e Desenvolvimento da FCT, Portugal
Fundação para a Ciência e a Tecnologia
Ongoing
2021/02/01 - 2024/01/31 New technologies for Stem cell Manufacturing bioprocess monitoring and ARTificial intelligence-based modeling
PTDC/EQU-EQU/3853/2020
Researcher
Associação do Instituto Superior Técnico para a Investigação e Desenvolvimento, Portugal

Universidade de Lisboa Instituto de Bioengenharia e Biociências, Portugal

Instituto de Telecomunicações, Portugal
Fundação para a Ciência e a Tecnologia
Ongoing
2019/01/01 - 2023/12/31 Applied Molecular Biosciences Unit
UIDP/04378/2020
UIDB/04378/2020
Universidade de Lisboa Instituto de Bioengenharia e Biociências, Portugal

Universidade Nova de Lisboa, Portugal

Rede de Química e Tecnologia Laboratório Associado para a Química Verde, Portugal

Universidade do Porto, Portugal

Unidade de Ciências Biomoleculares Aplicadas, Portugal

Universidade do Porto Instituto de Ciências Tecnologias e Agroambiente, Portugal

Associação do Instituto Superior Técnico para a Investigação e Desenvolvimento, Portugal

INESC Microsistemas e Nanotecnologias, Portugal

Universidade Nova de Lisboa Associação para a Inovação e Desenvolvimento da FCT, Portugal
Fundação para a Ciência e a Tecnologia
Concluded
2018/10/01 - 2022/09/30 Organoid Engineering for Production of 3D Cardiovascular Microtissues from Human Induced Pluripotent Stem Cells for Cardiotoxicity Assays
PTDC/EMD-TLM/29728/2017
Researcher
Associação do Instituto Superior Técnico para a Investigação e Desenvolvimento, Portugal
Fundação para a Ciência e a Tecnologia
Ongoing
2018/10/01 - 2022/09/30 Upscaling the Production of Human Pluripotent Stem Cell-derived Cardiomyocytes using Vertical-Wheel Bioreactors
PTDC/EQU-EQU/29653/2017
Researcher
Associação do Instituto Superior Técnico para a Investigação e Desenvolvimento, Portugal
Fundação para a Ciência e a Tecnologia
Ongoing
2018/06/01 - 2021/05/31 Generation of gene-edited cerebellar organoids for ataxia research
PTDC/BTM-SAL/29298/2017
Researcher
Associação do Instituto Superior Técnico para a Investigação e Desenvolvimento, Portugal

Universidade de Lisboa Instituto de Medicina Molecular João Lobo Antunes, Portugal
Fundação para a Ciência e a Tecnologia
Concluded
2016/12/01 - 2021/01/31 Accelerating progress toward the new era of precision medicine
SAICTPAC/0021/2015
Researcher
Universidade de Lisboa Instituto de Medicina Molecular João Lobo Antunes, Portugal

Instituto de Engenharia de Sistemas e Computadores Investigação e Desenvolvimento em Lisboa, Portugal

Associação do Instituto Superior Técnico para a Investigação e Desenvolvimento, Portugal
Fundação para a Ciência e a Tecnologia
Concluded
2020/02/01 - 2020/07/31 In vitro vascularization of neural organoids
SFRH/BSAB/150269/2019
Provided by PTCRIS: SFRH/BSAB/150269/2019
Principal investigator
Fundação para a Ciência e a Tecnologia
Concluded
2019/01/01 - 2019/12/31 Institute for Bioengineering and Biosciences
UID/BIO/04565/2019
Associação do Instituto Superior Técnico para a Investigação e Desenvolvimento, Portugal

Universidade de Lisboa Instituto de Bioengenharia e Biociências, Portugal
Fundação para a Ciência e a Tecnologia
Concluded
2014/12/01 - 2018/05/31 CARDIOSTEM- Engineered cardiac tissues and stem cell-based therapies for cardiovascular applications
MITP-TB/ECE/0013/2013
Researcher
Universidade de Coimbra Centro de Neurociências e Biologia Celular, Portugal

Instituto Nacional de Engenharia Biomédica, Portugal

Universidade de Lisboa Faculdade de Medicina Veterinária, Portugal

Centro Hospitalar de Lisboa Central EPE, Portugal

Instituto de Biologia Experimental e Tecnológica, Portugal

Associação do Instituto Superior Técnico para a Investigação e Desenvolvimento, Portugal
Fundação para a Ciência e a Tecnologia
Concluded
2013/01/01 - 2016/01/25 SIGNALING DYNAMICS IN HUMAN PLURIPOTENT STEM CELLS: SYSTEMS BIOENGINEERING APPROACHES FOR CONTROLLING STEM CELL FATE
SFRH/BPD/86316/2012
Provided by PTCRIS: SFRH/BPD/86316/2012
Post-doc Fellow
Fundação para a Ciência e a Tecnologia
Concluded
2014/01/01 - 2014/12/31 Bioengineering the Neural Commitment of Human Pluripotent Stem Cells: Rational Approaches for the Clinical-Grade Production of Neuronal Cells
EXPL/BBB-EBI/0294/2013
Principal investigator
Instituto de Biotecnologia e Bioengenharia, Portugal

Associação do Instituto Superior Técnico para a Investigação e Desenvolvimento, Portugal
Fundação para a Ciência e a Tecnologia

Fundação para a Ciência e a Tecnologia, I.P.
Concluded
2012/01/01 - 2014/12/31 StemPure - Bioprocess for Production and Purification of Human Pluripotent Stem Cell-derived Neural Cells for Regenerative Medicine Applications
PTDC/EBB-BIO/122504/2010
Researcher
Instituto de Biotecnologia e Bioengenharia, Portugal

Associação do Instituto Superior Técnico para a Investigação e Desenvolvimento, Portugal
Fundação para a Ciência e a Tecnologia
Concluded
2010/04/01 - 2013/09/30 StemCellQCM - Acoutic detectors for stem cell adhesion and differentiation
PTDC/SAU-BEB/105189/2008
Researcher
Instituto de Biotecnologia e Bioengenharia, Portugal

Universidade do Algarve, Portugal

Universidade de Lisboa Instituto Superior Técnico, Portugal
Fundação para a Ciência e a Tecnologia
Concluded
2010/01/01 - 2012/12/31 DESIGN AND FABRICATION OF ARTIFICIAL CELLULAR NICHES FOR DECONSTRUCTING HUMAN STEM CELL PLURIPOTENCY
SFRH/BPD/65439/2009
Provided by PTCRIS: SFRH/BPD/65439/2009
Post-doc Fellow
Fundação para a Ciência e a Tecnologia
Concluded
2010/01/01 - 2012/12/31 Exploring human embryonic stem cell fate using 3-D cellular microarrays
PTDC/EBB-BIO/101088/2008
Researcher
Universidade de Lisboa Instituto Superior Técnico, Portugal

Instituto de Biotecnologia e Bioengenharia, Portugal
Fundação para a Ciência e a Tecnologia
Concluded
2010/01/01 - 2012/12/31 Integrated Process for the Expansion and Neural Differentiation of Human Embryonic Stem Cells in Stirred Suspension Bioreactors
PTDC/EQU-ERQ/105277/2008
Researcher
Universidade de Lisboa Instituto Superior Técnico, Portugal

Instituto de Biotecnologia e Bioengenharia, Portugal
Fundação para a Ciência e a Tecnologia
Concluded
2006/01/01 - 2009/12/31 EX-VIVO DIFFERENTIATION OF MOUSE EMBRYONIC STEM CELLS IN MICROBIOREACTORS
SFRH/BD/24365/2005
Provided by PTCRIS: SFRH/BD/24365/2005
PhD Student Fellow
Fundação para a Ciência e a Tecnologia
Concluded
Outputs

Publications

Book
  1. Fernandes, T.G.; Diogo, M.M.; Cabral, J.M.S.. Engineering strategies for regenerative medicine. 2019.
    10.1016/C2018-0-00059-6
  2. Fernandes, T.G.; Cabral, J.M.S.. Stem-Cell Microscale Platforms for Toxicology Screening. 2018.
  3. Pascoal, J.F.; Fernandes, T.G.; Nierode, G.J.; Diogo, M.M.; Dordick, J.S.; Cabral, J.M.S.. Three-dimensional cell-based microarrays: printing pluripotent stem cells into 3D microenvironments. 2018.
    10.1007/978-1-4939-7792-5_6
  4. Rodrigues, G.M.C.; Fernandes, T.G.; Rodrigues, C.A.V.; Diogo, M.M.; Cabral, J.M.S.. Enrichment and Separation Technologies for Stem Cell-Based Therapies. 2016.
    10.1016/B978-0-444-63265-4.00009-1
  5. Badenes, S.M.; Fernandes, T.G.; Rodrigues, C.A.V.; Diogo, M.M.; Cabral, J.M.S.. Scalable expansion of human-induced pluripotent stem cells in xeno-free microcarriers. 2015.
    10.1007/7651_2014_106
  6. Rodrigues, G.M.C.; Fernandes, T.G.; Rodrigues, C.A.V.; Cabral, J.M.S.; Diogo, M.M.. Purification of human induced pluripotent stem cell-derived neural precursors using magnetic activated cell sorting. 2015.
    10.1007/7651_2014_115
  7. Fernandes, T.G.; Diogo, M.M.; Cabral, J.M.S.. Stem Cell Bioprocessing: For Cellular Therapy, Diagnostics and Drug Development. 2013.
Book chapter
  1. Rodrigues, A.L.; Fernandes, T.G.; Diogo, M.M.; Cabral, J.M.S.; Dordick, J.S.. "Advanced microtechnologies for high-throughput screening". 149-175. 2019.
  2. Cotovio, J.P.; Fernandes, T.G.; Diogo, M.M.; Cabral, J.M.S.. "Pluripotent stem cell biology and engineering". 1-31. 2019.
  3. Fernandes, T.G.; Diogo, M.M.; Cabral, J.M.S.. "Conclusions and closing remarks". 259-261. 2019.
  4. Rodrigues, C.A.V.; Fernandes, T.G.; Diogo, M.M.; da Silva, C.L.; Cabral, J.M.S.. "Bioreactors for Stem Cell Expansion and Differentiation". 38-1-38-28-38-1-38-28. 2018.
  5. Rodrigues, Carlos A.V.; Fernandes, Tiago G.; Diogo, Maria Margarida; Lobato da Silva, Cláudia; Cabral, Joaquim M.S.. "Bioreactors for Stem Cell Expansion and Differentiation". In The Biomedical Engineering Handbook, Fourth Edition - Molecular, Cellular, and Tissue Engineering, 38-1-38-28. CRC Press, 2015.
    Published
  6. Rodrigues, Carlos A.V.; Fernandes, Tiago G.; Diogo, Maria M.; da Silva, Claudia Lobato; Cabral, Joaquim M.S.. "Stem Cell Bioreactors". In UNESCO - Encyclopedia of Life Support Systems (EOLSS), edited by Berovic, M. UNESCO-EOLSS, 2011.
    Published
Conference abstract
  1. Rodrigues, Carlos A.V.; Nogueira, Diogo; Silva, Teresa P.; Fernandes, Tiago G.; Bekman, Evguenia; Hashimura, Y.; Jung, S.; et al. "Human Induced Pluripotent Stem Cell Culture in Vertical-Wheel Bioreactors". Paper presented in Virtual ESBES 2020, 2020.
    Published
  2. Rodrigues, Carlos A.V.; Rodrigues, André L.; Silva, Teresa P.; Fernandes, Tiago G.; Hashimura, Y.; Wesselschmidt, R.; Diogo, Maria M.; Lee, B.; Cabral, Joaquim M.S.. "Scalable microcarrier-based systems for pluripotent stem cell expansion". Paper presented in Stem Cell Community Day, Dusseldorf, 2018.
    Published
  3. Silva, Teresa P.; Bekman, Evguenia; Fernandes, Tiago G.; Rodrigues, Carlos A.V.; Diogo, Maria M.; Cabral, Joaquim M.S.; Carmo-Fonseca, M.. "Cerebellar differentiation and maturation from Human Induced Pluripotent Stem Cells". Paper presented in 10th International Meeting of the Portuguese Society for Stem Cells and Cell Therapies, Covilhã, 2017.
    Published
  4. Silva, Teresa P.; Bekman, Evguenia P.; Fernandes, Tiago G.; Rodrigues, Carlos A.V.; Diogo, Maria Margarida; Cabral, Joaquim M.S.; Carmo-Fonseca, Maria. "3D Cerebellar differentiation and Purkinje cell maturation from Human Induced Pluripotent Stem Cells". Paper presented in EMBO Symposium on Organoids: Modelling Organ Development and Disease in 3D Culture, Heidelberg, 2016.
    Published
  5. Miranda, Cláudia C.; Fernandes, Tiago G.; Diogo, Maria Margarida; Cabral, Joaquim M. S.. "Upscaling Neural Commitment of Human Pluripotent Stem Cells Using Dual SMAD Inhibition in Suspension Conditions". Paper presented in 10th European Symposium on Biochemical Engineering Sciences, Dublin, 2016.
  6. Cabral, Joaquim M. S.; Diogo, Maria Margarida; Lobato da Silva, C.; Fernandes-Platzgummer, Ana; Fernandes, Tiago G.; Henrique, Domingos. "Optimization and Integration of the Expansion and Neural Commitment of Mouse Embryonic Stem Cells". Paper presented in 6th European Symposium on Biochemical Engineering Science, Salzgurg, 2016.
  7. Diogo, Maria Margarida; Miranda, Cláudia C.; Fernandes, Tiago G.; Pascoal, Jorge F.; Cabral, Joaquim M. S.. "Temporal And Spatial Control Of The Neural Commitment Of Human Pluripotent Stem Cells As Suspension Aggregates". Paper presented in Scale-Up and Manufacturing of Cell-Based Therapies IV, San Diego, 2015.
  8. Fernandes, Tiago G.; Rodrigues, Carlos A.V.; Miranda, Cláudia C.; Diogo, Maria Margarida; Cabral, Joaquim M. S.. "Towards fully defined conditions for human induced pluripotent stem cell expansion". Paper presented in MicroBiotec’11, Braga, 2011.
  9. Fernandes-Platzgummer, Ana; Fernandes, Tiago G.; Diogo, Maria Margarida; Lobato da Silva, C.; Henrique, Domingos; Dordick, J.S.; Cabral, Joaquim M. S.. "Micro-scale and Bioreactor Systems for the Expansion of mouse embryonic stem (mES) cells". Paper presented in CHEMPOR 2008: 10th International Chemical and Biological Engineering Conference, Braga, 2008.
  10. Diogo, Maria Margarida; Fernandes-Platzgummer, Ana; Fernandes, Tiago G.; Lobato da Silva, C.; Henrique, Domingos; Cabral, Joaquim M. S.. "Large-scale and nano-scale approaches for the expansion of mouse embryonic stem (mES) cells". Paper presented in Third International Meeting of SPCE-TC, Faro, 2008.
  11. Diogo, Maria Margarida; Fernandes-Platzgummer, Ana; Fernandes, Tiago G.; Lobato da Silva, C.; Henrique, Domingos; Cabral, Joaquim M. S.. "Optimization of expansion and neural commitment of mouse embryonic stem cells". Paper presented in MicroBiotecXXXIII JPG 2007, Lisboa, 2007.
Conference paper
  1. Maranga, Carina; Silva, Teresa P.; Vaz, Sandra H.; Da Rocha, Simão; Fernandes, Tiago G.; Bekman, Evguenia P.; Cabral, Joaquim M. S.. "Disease modeling of Angelman syndrome using hiPSC-derived cerebellar organoids". Paper presented in XVI Meeting of the Portuguese Society for Neuroscience, 2019.
    10.3389/conf.fncel.2019.01.00041
  2. Miranda, C.C.; Pascoal, J.F.; Fernandes, T.G.; Diogo, M.M.; Cabral, J.M.S.. "Expansion and neural commitment of human pluripotent stem cells as 3D suspension aggregates". 2014.
  3. Fernandes, T.G.; Diogo, M.M.; Dordick, J.S.; Cabral, J.M.S.. "Exploring embryonic stem cell fate using cellular microarrays". 2011.
    10.1109/ENBENG.2011.6026038
  4. Fernandes, T.G.; Diogo, M.M.; Fernandes-Platzgummer, A.; Da Silva, C.L.; Cabral, J.M.S.. "Effect of hypoxia on proliferation and neural commitment of embryonic stem cells at different stages of pluripotency". 2011.
    10.1109/ENBENG.2011.6026039
Conference poster
  1. Alípio Gomes; Vieira, Adriana; Maranga, Carina; Casanova, Miguel; Laura Steenpass; Cabral, Joaquim; Fernandes, Tiago G.; da Rocha, Simão Teixeira; Bekman, Evguenia P.. "Correction of disease-causing mutation in Angelman syndrome patient derived iPSC line by CRISPR/Cas9". Paper presented in 12th International Meeting of the Portuguese Society for Stem Cells and Cell therapies, 2022.
  2. Maranga, Carina; Silva, Teresa P.; Vaz, Sandra H.; Cabral, Joaquim; da Rocha, Simão Teixeira; Fernandes, Tiago G.; Bekman, Evguenia P.. "Recapitulating disease features in cerebellar organoids model of Angelman syndrome". Paper presented in 12th International Meeting of the Portuguese Society for Stem Cells and Cell therapies, 2022.
  3. Cotovio, João P.; Lee, Brian; Cabral, Joaquim; Fernandes, Tiago G.. "A Bridge Between Development and Engineering: Creating Liver Bud Organoids from hiPSCs". Paper presented in 18th Vienna BioCenter PhD Symposium - Building Bridges, Vienna, Austria, 2021.
  4. Maranga, Carina; Silva, Teresa P.; Vaz, Sandra H.; Cabral, Joaquim M.S; da Rocha, Simão T.; Fernandes, Tiago G.; Bekman, Evguenia. "Modeling Angelman Syndrome with human induced pluripotent stem cell-derived cerebellar organoids". Paper presented in Vienna Biocenter PhD Symposium 2021 'Building Bridges', 2021.
  5. Cotovio, João P.; Lee, Brian; Cabral, Joaquim; Fernandes, Tiago G.. "Production of Liver Organoids from hiPSCs in Dynamic Suspension Culture". Paper presented in 4th Doctoral Congress in Engineering - Symposium on Biomedical Engineering, Porto, Portugal, 2021.
  6. Maranga, Carina; Vieira, Adriana A; Fernandes, Tiago G.; Cabral, Joaquim M. S.; da Rocha, Simão T.; Bekman, Evguenia P.. "Brain-in-a-dish approach for studying Angelman Syndrome". Paper presented in Neuroepigenetics: From Cells to Behaviour and Disease Virtual EMBO Workshop, 2020.
  7. Ana Rita Gomes; Fernandes, Tiago G.; Vaz, Sandra H.; Silva, Teresa P.; Bekman, Evguenia; Xapeli, Sara; Sebastião, AM; Joaquim M.S. Cabral; Diogo, Maria Margarida. "Modelling Rett syndrome with human patient-specific forebrain organoids". Paper presented in EMBO Symposium on Organoids: Modelling Organ Development and Disease in 3D Culture, 2020.
  8. Maranga, Carina; Silva, Teresa P.; Fernandes, Tiago G.; da Rocha, Simão T.; Bekman, Evguenia P.; Cabral, Joaquim M. S.. "hiPSC-derived cerebellar organoids to model Angelman Syndrome". Paper presented in Organoids: Modelling Organ Development and Disease in 3D culture, Virtual EMBO Conference, 2020.
  9. Silva, Teresa P.; Fernandes, Tiago G.; Bekman, Evguenia P.; Vaz, Sandra H.; Rodrigues, Carlos A.V.; Hashimura, Yas; Jung, S; et al. "Large scale production of cerebellar organoids from human pluripotent stem cells using the novel Vertical-Wheel single-use bioreactors". Paper presented in 7th International Conference on Stem Cell Engineering, Barcelona, Spain, 2019.
  10. Branco, Mariana A.; Cotovio, João P.; Rodrigues, Carlos A.V.; Vaz, Sandra H.; Fernandes, Tiago G.; Moreira, Leonilde M.; Cabral, Joaquim M. S.; Diogo, Maria Margarida. "Transcriptomic analysis of 3D Cardiac Differentiation of Human Induced Pluripotent Stem Cells Reveals Faster Maturation Compared to 2D Culture". Paper presented in Advanced Cell Therapies and Tissue Engineering, 2019.
  11. Maranga, Carina; Silva, Teresa P.; Vaz, Sandra H.; Teixeira da Rocha, Simão; Fernandes, Tiago G.; Bekman, Evguenia P.; Cabral, Joaquim M. S.. "Cerebellar organoids derived from human pluripotent stem cells to model Angelman Syndrome". Paper presented in International Meeting of the Portuguese Society for Stem Cells and Cell Therapies, Lisbon, Portugal, 2019.
  12. Saraiva J.E; Fernandes, Tiago G.; Branco, Mariana A.; Cotovio, João P.; Gomes, Ana R.; Rodrigues, Carlos A.V.; Moreira, Leonilde M.; Diogo, Maria Margarida; Cabral, Joaquim M. S.. "Population-level dynamics of human pluripotent stem cell fate transitions". Paper presented in 11th International Meeting of the Portuguese Society for Stem Cells and Cell Therapies 2019, 2019.
  13. Silva, Teresa P.; Fernandes, Tiago G.; Bekman, Evguenia P.; Vaz, Sandra H.; Rodrigues, Carlos A.V.; Hashimura, Y.; Jung, S.; et al. "Scalable generation of cerebellar neurons from pluripotent stem cells". Paper presented in ECI Advancing Manufacture of Cell and Gene Therapies VI, 2019.
  14. Silva, Teresa P.; Fernandes, Tiago G.; Bekman, Evguenia P.; Vaz, Sandra H.; Rodrigues, Carlos A.V.; Hashimura, Yas; Jung, S; et al. "Scalable generation of mid-hindbrain organoids from human pluripotent stem cells". Paper presented in EMBO Symposium on Organoids: Modelling Organ Development and Disease in 3D Culture, Heidelberg, Germany, 2018.
  15. Rodrigues, Carlos A.V.; Silva, Teresa P.; Fernandes, Tiago G.; Hashimura, Y.; Wesselschmidt, Robin; Diogo, Maria Margarida; Lee, B.; Cabral, Joaquim M.S.. "Scalable expansion of human induced pluripotent cells on microcarriers using single-use vertical-wheel™ bioreactors". Paper presented in 10th International Meeting of the Portuguese Society for Stem Cells and Cell Therapies (SPCE-TC), 2017.
  16. Rodrigues, Carlos A.V.; Silva, Teresa P.; Fernandes, Tiago G.; Hashimura, Yas; Wesselschmidt, Robin; Diogo, Maria Margarida; Lee, Brian; Cabral, Joaquim M. S.. "Scalable expansion of human induced pluripotent cells on microcarriers using single-used vertical-wheel bioreactors". Paper presented in 10th International Meeting of the Portuguese Society for Stem Cells and Cell Therapies, 2017.
  17. Rodrigues, Carlos A.V.; Fernandes, Tiago G.; Giroux, D.; Hashimura, Y.; Wesselschmidt, R.; Diogo, Maria M.; Lee, B.; Cabral, Joaquim M.S.. "Development Of A Scale-Down Approach To The Scalable Culture Of Induced Pluripotent Stem Cells On Microcarriers Using Single-Use Vertical-WheelTM Bioreactors Under Xeno-Free Conditions". Paper presented in ECI Scale-up and Manufacturing of Cell-based Therapies V, 2017.
  18. Silva, Teresa P.; Fernandes, Tiago G.; Bekman, Evguenia P.; Rodrigues, Carlos A.V.; Diogo, Maria Margarida; Carmo-Fonseca, Maria; Cabral, Joaquim M.S.. "Cerebellar differentiation and Purkinje cell maturation from Human Induced Pluripotent Stem Cells". Paper presented in International Conference on Stem Cell Engineering, 2016.
  19. Rodrigues, Carlos A.V.; Fernandes, Tiago G.; Giroux, D.; Hashimura, Y.; Wesselschmidt, R.; Diogo, Maria Margarida; Lee, B.; Cabral, Joaquim M.S.. "Induced Pluripotent Cell Culture Using Single-Use Vertical-Wheel Bioreactors Under Xeno-Free Conditions". Paper presented in 20th Annual Regenerative Medicine Workshop, 2016.
  20. Fernandes-Platzgummer, Ana; Fernandes, Tiago G.; Diogo, Maria Margarida; Lobato da Silva, C.; Dordick, J.S.; Cabral, Joaquim M. S.. "Effects of low oxygen tension on mouse embryonic stem cell expansion". Paper presented in 7th ISSCR Annual Meeting, Barcelona, Spain, 2009.
Journal article
  1. Bahram Sangani N; Koetsier J; Gomes AR; Diogo MM; Fernandes TG; Bouwman FG; Mariman ECM; et al. "Involvement of extracellular vesicle microRNA clusters in developing healthy and Rett syndrome brain organoids.". Cellular and molecular life sciences : CMLS (2024): http://europepmc.org/abstract/med/39305343.
    10.1007/s00018-024-05409-7
  2. Branco A; Rayabaram J; Miranda CC; Fernandes-Platzgummer A; Fernandes TG; Sajja S; da Silva CL; Vemuri MC. "Advances in ex vivo expansion of hematopoietic stem and progenitor cells for clinical applications.". Frontiers in bioengineering and biotechnology (2024): http://europepmc.org/abstract/med/38846805.
    10.3389/fbioe.2024.1380950
  3. Chiara Scodellaro; Raquel R. Pina; Frederico Castelo Ferreira; Paola Sanjuan-Alberte; Tiago G. Fernandes. "Unlocking the Potential of Stem Cell Microenvironments In Vitro". Bioengineering (2024): https://doi.org/10.3390/bioengineering11030289.
    10.3390/bioengineering11030289
  4. Tenreiro, M.F.; Branco, M.A.; Cotovio, J.P.; Cabral, J.M.S.; Fernandes, T.G.; Diogo, M.M.. "Advancing organoid design through co-emergence, assembly, and bioengineering". Trends in Biotechnology (2023): http://www.scopus.com/inward/record.url?eid=2-s2.0-85146345562&partnerID=MN8TOARS.
    10.1016/j.tibtech.2022.12.021
  5. Soares, B.X.; Miranda, C.C.; Fernandes, T.G.. "Systems bioengineering approaches for developmental toxicology". Computational and Structural Biotechnology Journal 21 (2023): 3272-3279. http://www.scopus.com/inward/record.url?eid=2-s2.0-85161606634&partnerID=MN8TOARS.
    10.1016/j.csbj.2023.06.005
  6. Fernandes, T.G.. "Organoids as complex (bio)systems". Frontiers in Cell and Developmental Biology 11 (2023): http://www.scopus.com/inward/record.url?eid=2-s2.0-85170220679&partnerID=MN8TOARS.
    10.3389/fcell.2023.1268540
  7. Tiago G. Fernandes. "Design and Fabrication of Artificial Stem Cell Niches". Bioengineering (2022): https://doi.org/10.3390/bioengineering9120813.
    10.3390/bioengineering9120813
  8. Tiago P. Dias; Sandra N. Pinto; Sandra Carvalho; Tiago G. Fernandes; Fábio Fernandes; Maria Margarida Diogo; Maria C. Peleteiro; Manuel Prieto; Joaquim M. S. Cabral. "Cost-Effective Mechanical Aggregation of Cardiac Progenitors and Encapsulation in Matrigel Support Self-Organization in a Dynamic Culture Environment". International Journal of Molecular Sciences (2022): https://doi.org/10.3390/ijms232415785.
    10.3390/ijms232415785
  9. Tiago P. Dias; Tânia Baltazar; Sandra N. Pinto; Tiago G. Fernandes; Fábio Fernandes; Maria Margarida Diogo; Manuel Prieto; Joaquim M. S. Cabral; Ren-Ke Li. "Xeno-Free Integrated Platform for Robust Production of Cardiomyocyte Sheets from hiPSCs". Stem Cells International (2022): https://doi.org/10.1155/2022/4542719.
    10.1155/2022/4542719
  10. "A Dynamic 3D Aggregate-Based System for the Successful Expansion and Neural Induction of Human Pluripotent Stem Cells". Frontiers in Cellular Neurosciences (2022): https://www.frontiersin.org/articles/10.3389/fncel.2022.838217/abstract.
    10.3389/fncel.2022.838217
  11. Borges, A.C.; Broersen, K.; Leandro, P.; Fernandes, T.G.. "Engineering Organoids for in vitro Modeling of Phenylketonuria". Frontiers in Molecular Neuroscience 14 (2022): http://www.scopus.com/inward/record.url?eid=2-s2.0-85123361416&partnerID=MN8TOARS.
    10.3389/fnmol.2021.787242
  12. Teresa P. Silva; Rui Sousa-Luís; Tiago G. Fernandes; Evguenia P. Bekman; Carlos A. V. Rodrigues; Sandra H. Vaz; Leonilde M. Moreira; et al. "Transcriptome profiling of human pluripotent stem cell-derived cerebellar organoids reveals faster commitment under dynamic conditions". Biotechnology and Bioengineering (2021): https://doi.org/10.1002/bit.27797.
    10.1002/bit.27797
  13. Lei Y; Willerth SM; Fernandes TG. "Editorial: Stem Cell Systems Bioengineering.". Frontiers in bioengineering and biotechnology (2021): http://europepmc.org/abstract/med/34026746.
    10.3389/fbioe.2021.693107
  14. Ana Rita Gomes; Tiago G. Fernandes; Joaquim M.S. Cabral; Maria Margarida Diogo. "Modeling Rett Syndrome with Human Pluripotent Stem Cells: Mechanistic Outcomes and Future Clinical Perspectives". International Journal of Molecular Sciences (2021): https://doi.org/10.3390/ijms22073751.
    10.3390/ijms22073751
  15. Ana Rita Gomes; Nasim Bahram Sangani; Tiago G. Fernandes; M. Margarida Diogo; Leopold M. G. Curfs; Chris P. Reutelingsperger. "Extracellular Vesicles in CNS Developmental Disorders". International Journal of Molecular Sciences (2020): https://doi.org/10.3390/ijms21249428.
    10.3390/ijms21249428
  16. Gomes AR; Fernandes TG; Vaz SH; Silva TP; Bekman EP; Xapelli S; Duarte S; et al. "Modeling Rett Syndrome With Human Patient-Specific Forebrain Organoids.". Frontiers in cell and developmental biology (2020): http://europepmc.org/abstract/med/33363173.
    10.3389/fcell.2020.610427
  17. Padrão I; Fernandes CSM; Esteves C; Fernandes T; Pina AS; Roque ACA. "Versatile and Tunable Poly(Ethylene Glycol)-Based Hydrogels Crosslinked through the Ugi Reaction.". ChemPlusChem (2020): http://europepmc.org/abstract/med/33369274.
    10.1002/cplu.202000743
  18. Branco MA; Dias TP; Cotovio JP; Rodrigues CAV; Fernandes TG; Cabral JMS; Diogo MM. "3D Microwell Platform for Cardiomyocyte Differentiation of Human Pluripotent Stem Cells.". Methods in molecular biology (Clifton, N.J.) (2020): http://europepmc.org/abstract/med/33145715.
    10.1007/7651_2020_336
  19. Fernandes, Tiago G.. "Natural Multimerization Rules the Performance of Affinity-Based Physical Hydrogels for Stem Cell Encapsulation and Differentiation.". Biomacromolecules (2020): https://doi.org/10.1021/acs.biomac.0c00473.
    10.1021/acs.biomac.0c00473
  20. Fernandes, Tiago G.. "Scalable Generation of Mature Cerebellar Organoids from Human Pluripotent Stem Cells and Characterization by Immunostaining.". Journal of visualized experiments : JoVE (2020): https://doi.org/10.3791/61143.
    10.3791/61143
  21. João P. Cotovio; Tiago G. Fernandes. "Production of Human Pluripotent Stem Cell-Derived Hepatic Cell Lineages and Liver Organoids: Current Status and Potential Applications". Bioengineering 7 2 (2020): 36-36. https://doi.org/10.3390/bioengineering7020036.
    10.3390/bioengineering7020036
  22. Silva, Teresa P.; Bekman, Evguenia P.; Fernandes, Tiago G.; Vaz, Sandra H.; Rodrigues, Carlos A. V.; Diogo, Maria Margarida; Cabral, Joaquim M. S.; Carmo-Fonseca, Maria. "Maturation of Human Pluripotent Stem Cell-Derived Cerebellar Neurons in the Absence of Co-culture". Frontiers in Bioengineering and Biotechnology 8 (2020): http://dx.doi.org/10.3389/fbioe.2020.00070.
    10.3389/fbioe.2020.00070
  23. Maranga C; Fernandes TG; Bekman E; Teixeira da Rocha S. "Angelman Syndrome: a journey through the brain.". The FEBS journal (2020): http://europepmc.org/abstract/med/32087041.
    10.1111/febs.15258
  24. Miranda CC; Fernandes TG; Diogo MM; Cabral JMS. "Human Pluripotent Stem Cells: Applications and Challenges for Regenerative Medicine and Disease Modeling.". Advances in biochemical engineering/biotechnology (2020): http://europepmc.org/abstract/med/31740987.
    10.1007/10_2019_117
  25. Fernandes, C.S.M., Pina, A.S., Moura Barbosa, A.J., Padrão, I., Duarte, F., Teixeira, C.A.S., Alves, V., et al.. "Affinity-triggered assemblies based on a designed peptide-peptide affinity pair.". Biotechnology journal 14 11 (2019): e1800559. https://doi.org/10.1002/biot.201800559.
    10.1002/biot.201800559
  26. Tiago G. Fernandes; Ricardo P. Baptista; Howard Kim. "Engineering Cell Systems". Stem Cells International (2019): https://doi.org/10.1155/2019/4685137.
    10.1155/2019/4685137
  27. Teresa P. Silva; João P. Cotovio; Evguenia Bekman; Maria Carmo-Fonseca; Joaquim M. S. Cabral; Tiago G. Fernandes. "Design Principles for Pluripotent Stem Cell-Derived Organoid Engineering". Stem Cells International 2019 (2019): 1-17. https://doi.org/10.1155/2019/4508470.
    10.1155/2019/4508470
  28. Branco, M.A.; Cotovio, J.P.; Rodrigues, C.A.V.; Vaz, S.H.; Fernandes, T.G.; Moreira, L.M.; Cabral, J.M.S.; Diogo, M.M.. "Transcriptomic analysis of 3D Cardiac Differentiation of Human Induced Pluripotent Stem Cells Reveals Faster Cardiomyocyte Maturation Compared to 2D Culture". Scientific Reports 9 1 (2019): http://www.scopus.com/inward/record.url?eid=2-s2.0-85068061234&partnerID=MN8TOARS.
    10.1038/s41598-019-45047-9
  29. Dias, T.P.; Fernandes, T.G.; Diogo, M.M.; Cabral, J.M.S.. "Multifactorial modeling reveals a dominant role of wnt signaling in lineage commitment of human pluripotent stem cells". Bioengineering 6 3 (2019): http://www.scopus.com/inward/record.url?eid=2-s2.0-85073387087&partnerID=MN8TOARS.
    10.3390/bioengineering6030071
  30. Miranda, C.C.; Fernandes, T.G.; Pinto, S.N.; Prieto, M.; Diogo, M.M.; Cabral, J.M.S.. "A scale out approach towards neural induction of human induced pluripotent stem cells for neurodevelopmental toxicity studies". Toxicology Letters 294 (2018): 51-60. http://www.scopus.com/inward/record.url?eid=2-s2.0-85047137479&partnerID=MN8TOARS.
    10.1016/j.toxlet.2018.05.018
  31. Rodrigues, C.A.; Silva, T.P.; Nogueira, D.E.; Fernandes, T.G.; Hashimura, Y.; Wesselschmidt, R.; Diogo, M.M.; Lee, B.; Cabral, J.M.. "Scalable culture of human induced pluripotent cells on microcarriers under xeno-free conditions using single-use vertical-wheel™ bioreactors". Journal of Chemical Technology and Biotechnology (2018): http://www.scopus.com/inward/record.url?eid=2-s2.0-85050883098&partnerID=MN8TOARS.
    10.1002/jctb.5738
  32. Miranda, C.C.; Fernandes, T.G.; Diogo, M.M.; Cabral, J.M.S.. "Towards multi-organoid systems for drug screening applications". Bioengineering 5 3 (2018): http://www.scopus.com/inward/record.url?eid=2-s2.0-85056790027&partnerID=MN8TOARS.
    10.3390/bioengineering5030049
  33. Dias, T.P.; Pinto, S.N.; Santos, J.I.; Fernandes, T.G.; Fernandes, F.; Diogo, M.M.; Prieto, M.; Cabral, J.M.S.. "Biophysical study of human induced Pluripotent Stem Cell-Derived cardiomyocyte structural maturation during long-term culture". Biochemical and Biophysical Research Communications 499 3 (2018): 611-617. http://www.scopus.com/inward/record.url?eid=2-s2.0-85045378556&partnerID=MN8TOARS.
    10.1016/j.bbrc.2018.03.198
  34. Badenes, S.M.; Fernandes, T.G.; Miranda, C.C.; Pusch-Klein, A.; Haupt, S.; Rodrigues, C.A.V.; Diogo, M.M.; Brüstle, O.; Cabral, J.M.S.. "Long-term expansion of human induced pluripotent stem cells in a microcarrier-based dynamic system". Journal of Chemical Technology and Biotechnology 92 3 (2017): 492-503. http://www.scopus.com/inward/record.url?eid=2-s2.0-84990198014&partnerID=MN8TOARS.
    10.1002/jctb.5074
  35. Badenes, S.M.; Fernandes, T.G.; Cordeiro, C.S.M.; Boucher, S.; Kuninger, D.; Vemuri, M.C.; Diogo, M.M.; Cabral, J.M.S.. "Defined essential 8' medium and vitronectin efficiently support scalable xeno-free expansion of human induced pluripotent stem cells in stirred microcarrier culture systems". PLoS ONE 11 3 (2016): http://www.scopus.com/inward/record.url?eid=2-s2.0-84962476807&partnerID=MN8TOARS.
    10.1371/journal.pone.0151264
  36. Badenes, S.M.; Fernandes, T.G.; Rodrigues, C.A.V.; Diogo, M.M.; Cabral, J.M.S.. "Microcarrier-based platforms for in vitro expansion and differentiation of human pluripotent stem cells in bioreactor culture systems". Journal of Biotechnology 234 (2016): 71-82. http://www.scopus.com/inward/record.url?eid=2-s2.0-84980371010&partnerID=MN8TOARS.
    10.1016/j.jbiotec.2016.07.023
  37. Miranda, C.C.; Fernandes, T.G.; Diogo, M.M.; Cabral, J.M.S.. "Scaling up a chemically-defined aggregate-based suspension culture system for neural commitment of human pluripotent stem cells". Biotechnology Journal 11 12 (2016): 1628-1638. http://www.scopus.com/inward/record.url?eid=2-s2.0-85003042306&partnerID=MN8TOARS.
    10.1002/biot.201600446
  38. Badenes, S.M.; Fernandes, T.G.; Cordeiro, C.S.M.; Boucher, S.; Kuninger, D.; Vemuri, M.C.; Diogo, M.M.; Cabral, J.M.S.. "Correction: Defined essential 8™ medium and vitronectin efficiently support scalable xeno-free expansion of human induced pluripotent stem cells in stirred microcarrier culture systems (PLOS ONE (2016)11:5(e0155296)Doi: 10.1371/journal.pone.0151264)". PLoS ONE 11 5 (2016): http://www.scopus.com/inward/record.url?eid=2-s2.0-85060211680&partnerID=MN8TOARS.
    10.1371/journal.pone.0155296
  39. Miranda, C.C.; Fernandes, T.G.; Pascoal, J.F.; Haupt, S.; Brüstle, O.; Cabral, J.M.; Diogo, M.M.. "Spatial and temporal control of cell aggregation efficiently directs human pluripotent stem cells towards neural commitment". Biotechnology Journal (2015): http://www.scopus.com/inward/record.url?eid=2-s2.0-84928629732&partnerID=MN8TOARS.
    10.1002/biot.201400846
  40. Fernandes, T.G.. "Engineering at the microscale: A step towards single-cell analysis of human pluripotent stem cells". Biotechnology Journal (2015): http://www.scopus.com/inward/record.url?eid=2-s2.0-84937500674&partnerID=MN8TOARS.
    10.1002/biot.201500307
  41. Rodrigues, G.M.C.; Rodrigues, C.A.V.; Fernandes, T.G.; Diogo, M.M.; Cabral, J.M.S.. "Clinical-scale purification of pluripotent stem cell derivatives for cell-based therapies". Biotechnology Journal 10 8 (2015): 1103-1114. http://www.scopus.com/inward/record.url?eid=2-s2.0-84938806348&partnerID=MN8TOARS.
    10.1002/biot.201400535
  42. Fernandes, T.G.; Duarte, S.T.; Ghazvini, M.; Gaspar, C.; Santos, D.C.; Porteira, A.R.; Rodrigues, G.M.C.; et al. "Neural commitment of human pluripotent stem cells under defined conditions recapitulates neural development and generates patient-specific neural cells". Biotechnology Journal (2015): http://www.scopus.com/inward/record.url?eid=2-s2.0-84934300606&partnerID=MN8TOARS.
    10.1002/biot.201400751
  43. Fernandes, T.G.; Rodrigues, C.A.V.; Diogo, M.M.; Cabral, J.M.S.. "Stem cell bioprocessing for regenerative medicine". Journal of Chemical Technology and Biotechnology 89 1 (2014): 34-47. http://www.scopus.com/inward/record.url?eid=2-s2.0-84897050716&partnerID=MN8TOARS.
    10.1002/jctb.4189
  44. Rodrigues, G.M.C.; Matos, A.F.S.; Fernandes, T.G.; Rodrigues, C.A.V.; Peitz, M.; Haupt, S.; Diogo, M.M.; Brüstle, O.; Cabral, J.M.S.. "Integrated Platform for Production and Purification of Human Pluripotent Stem Cell-Derived Neural Precursors". Stem Cell Reviews and Reports 10 2 (2014): 151-161. http://www.scopus.com/inward/record.url?eid=2-s2.0-84897385766&partnerID=MN8TOARS.
    10.1007/s12015-013-9482-z
  45. Barbosa, H.S.C.; Fernandes, T.G.; Dias, T.P.; Diogo, M.M.; Cabral, J.M.S.. "New insights into the mechanisms of embryonic stem cell self-renewal under Hypoxia: A multifactorial analysis approach". PLoS ONE 7 6 (2012): http://www.scopus.com/inward/record.url?eid=2-s2.0-84862219618&partnerID=MN8TOARS.
    10.1371/journal.pone.0038963
  46. Rodrigues, C.A.V.; Fernandes, T.G.; Diogo, M.M.; da Silva, C.L.; Cabral, J.M.S.. "Stem cell cultivation in bioreactors". Biotechnology Advances 29 6 (2011): 815-829. http://www.scopus.com/inward/record.url?eid=2-s2.0-80053449223&partnerID=MN8TOARS.
    10.1016/j.biotechadv.2011.06.009
  47. Fernandes, T.G.; Barbosa, H.S.C.; Diogo, M.M.; Cabral, J.M.S.; Dordick, J.S.. "Stem cell microarrays as novel systems for high-throughput screening applications". Bio Tech International 22 2 (2010): 16-18. http://www.scopus.com/inward/record.url?eid=2-s2.0-79953314506&partnerID=MN8TOARS.
  48. Fernandes, T.G.; Diogo, M.M.; Fernandes-Platzgummer, A.; da Silva, C.L.; Cabral, J.M.S.. "Different stages of pluripotency determine distinct patterns of proliferation, metabolism, and lineage commitment of embryonic stem cells under hypoxia". Stem Cell Research 5 1 (2010): 76-89. http://www.scopus.com/inward/record.url?eid=2-s2.0-77953286613&partnerID=MN8TOARS.
    10.1016/j.scr.2010.04.003
  49. Fernandes, T.G.; Fernandes-Platzgummer, A.M.; da Silva, C.L.; Diogo, M.M.; Cabral, J.M.S.. "Kinetic and metabolic analysis of mouse embryonic stem cell expansion under serum-free conditions". Biotechnology Letters 32 1 (2010): 171-179. http://www.scopus.com/inward/record.url?eid=2-s2.0-72249097517&partnerID=MN8TOARS.
    10.1007/s10529-009-0108-0
  50. Fernandes, T.G.; Kwon, S.-J.; Bale, S.S.; Lee, M.-Y.; Diogo, M.M.; Clark, D.S.; Cabral, J.M.S.; Dordick, J.S.. "Three-dimensional cell culture microarray for high-throughput studies of stem cell fate". Biotechnology and Bioengineering 106 1 (2010): 106-118. http://www.scopus.com/inward/record.url?eid=2-s2.0-77951583526&partnerID=MN8TOARS.
    10.1002/bit.22661
  51. Fernandes, T.G.; Diogo, M.M.; Clark, D.S.; Dordick, J.S.; Cabral, J.M.S.. "High-throughput cellular microarray platforms: applications in drug discovery, toxicology and stem cell research". Trends in Biotechnology 27 6 (2009): 342-349. http://www.scopus.com/inward/record.url?eid=2-s2.0-65549112285&partnerID=MN8TOARS.
    10.1016/j.tibtech.2009.02.009
  52. Fernandes, T.G.; Kwon, S.-J.; Lee, M.-Y.; Clark, D.S.; Cabral, J.M.S.; Dordick, J.S.. "On-chip, cell-based microarray immunofluorescence assay for high-throughput analysis of target proteins". Analytical Chemistry 80 17 (2008): 6633-6639. http://www.scopus.com/inward/record.url?eid=2-s2.0-51549106300&partnerID=MN8TOARS.
    10.1021/ac800848j
  53. Fernandes, A.M.; Fernandes, T.G.; Diogo, M.M.; da Silva, C.L.; Henrique, D.; Cabral, J.M.S.. "Mouse embryonic stem cell expansion in a microcarrier-based stirred culture system". Journal of Biotechnology 132 2 (2007): 227-236. http://www.scopus.com/inward/record.url?eid=2-s2.0-35348996645&partnerID=MN8TOARS.
    10.1016/j.jbiotec.2007.05.031
Activities

Oral presentation

Presentation title Event name
Host (Event location)
2019/12 Engineering of Forebrain Organoids from Human Induced Pluripotent Stem Cells for Modeling of Rett Syndrome (RTT) [Contributing author] 7th International Conference on Stem Cell Engineering 2019
Society for Biological Engineering (Barcelona, Spain)
2019/12 Population-Level Dynamics of Human Pluripotent Stem Cell Fate Transitions [Presenter] 7th International Conference on Stem Cell Engineering 2019
Society for Biological Engineering (Barcelona, Spain)
2019/10/10 Transcriptomic Analysis of 3D Cardiac Differentiation of Human Induced Pluripotent Stem Cells Reveals Faster Maturation of Cardiomyocytes Compared to 2D Culture [Contributing author] 11th International Meeting of the Portuguese Society for Stem Cells and Cell Therapies
Portuguese Society for Stem Cells and Cell Therapies (Lisbon, Portugal)
2018/12 Transcriptomic Analysis of 3D Cardiac Differentiation of Human Induced Pluripotent Stem Cells Reveals Faster Maturation Compared to 2D Culture [Presenter] International Conference on Stem Cell Engineering 2018
American Institute of Chemical Engineers (AIChE) (Los Angeles, United States)
2018/12 Development and Characterization of Brain Region-Specific Organoids from Human Induced Pluripotent Stem Cells for Modelling of Rett Syndrome [Contributing author] International Conference on Stem Cell Engineering 2018
American Institute of Chemical Engineers (AIChE) (Los Angeles, United States)
2018/09 Production and characterization of brain region-specific organoids from human induced pluripotent stem cells for modelling of Rett Syndrome [Contributing author] ESBES-12, 12th European Symposium on Biochemical Engineering Science
European Symposium on Biochemical Engineering Science (Lisbon, Portugal)
2018/09 Novel size-controlled 3D aggregate platform for cardiac differentiation of hiPSCs for toxicology assays [Contributing author] ESBES-12, 12th European Symposium on Biochemical Engineering Science
European Symposium on Biochemical Engineering Science
2018/04 Scalable microcarrier-based systems for pluripotent stem cell expansion [Contributing author] Eppendorf Stem Cell Community Day
Eppendorf (Dusseldorf, Germany)
2017/10/12 Scalable Expansion of Human Induced Pluripotent Cells on Microcarriers Using Single-Use Vertical-Wheel Bioreactors [Contributing author] 10th International Meeting of the Portuguese Society for Stem Cells and Cell Therapies
Portuguese Society for Stem Cells and Cell Therapies (Covilhã, Portugal)
2017/10/12 Cerebellar differentiation and maturation from Human Induced Pluripotent Stem Cells [Contributing author] 10th International Meeting of the Portuguese Society for Stem Cells and Cell Therapies
Portuguese Society for Stem Cells and Cell Therapies (Covilhã, Portugal)
2016/10/23 Scaling up a Chemically-Defined Aggregate-Based Suspension Culture System for Neural Commitment of Human Pluripotent Stem Cells [Contributing author] International Conference on Stem Cell Engineering 2016
American Institute of Chemical Engineers (AIChE) (Toronto, Canada)
2016/10/12 3D Cerebellar differentiation and maturation from Human Induced Pluripotent Stem Cells [Contributing author] EMBO Symposium on Organoids: Modelling Organ Development and Disease in 3D Culture
EMBO (Heidelberg, Germany)
2016/09 Xeno-free Expansion of Human Induced Pluripotent Stem Cells in Scalable Stirred Microcarrier Culture Systems [Contributing author] European Symposium on Biochemical Engineering Sciences (ESBES) 2016
European Symposium on Biochemical Engineering Science (Dublin, Ireland)
2016/09 Upscaling Neural Commitment of Human Pluripotent Stem Cells using Dual SMAD Inhibition in Suspension Conditions [Contributing author] European Symposium on Biochemical Engineering Sciences (ESBES) 2016
European Symposium on Biochemical Engineering Science (Dublin, Ireland)
2016/03/16 Factorial Analysis Of Signaling Pathways Involved In Pluripotency And Lineage Specification Reveals A Dominant Effect Of Wnt Signaling In Mesendoderm Differentiation Of Human Pluripotent Stem Cells [Presenter] 20th Annual Regenerative Medicine Workshop at Hilton Head
(Hilton Head, United States)
2015/10/15 Spatial and Temporal Control of Cell Aggregation Efficiently directs Human Pluripotent Stem Cells towards Neural Commitment [Contributing author] 9th International Meeting of the Portuguese Society for Stem Cells and Cell Therapies
Portuguese Society for Stem Cells and Cell Therapies (Oeiras, Portugal)
2015/01/18 Temporal and spatial control of the neural commitment of human pluripotent stem cells as suspension aggregates [Contributing author] Scale-up and Manufacturing of Cell-Based Therapies III
Engineering Conferences International (ECI) (San Diego, United States)
2014/09 Integrated Platform for Derivation and Enrichment of Human Pluripotent Stem Cell-Derived Cardiomyocytes: Towards Clinical Applications - Malcolm Lilly Award Lecture [Contributing author] 10th European Symposium on Biochemical Engineering Sciences and 6th International Forum on Industrial Bioprocesses
European Symposium on Biochemical Engineering Science (Lille, France)
2014/03/16 Purification of Human Induced Pluripotent Stem Cell-Derived Neural Progenitors for Regenerative Medicine Applications [Presenter] SBE’s 4th International Conference on Stem Cell Engineering
American Institute of Chemical Engineers (AIChE) (San Diego, United States)
2013/04/21 Purification of Human Induced Pluripotent Stem Cell-Derived Neural Progenitors for Regenerative Medicine Applications [Contributing author] 2nd European Congress of Applied Biotechnology
(The Hague, Netherlands)
2012/10/18 High-Throughput Cellular Microarray Platforms: Applications in Drug Discovery, Toxicology and Stem Cell Research [Invited Lecture, Presenter] Workshop Nano12 - Shaping the Future
(Lisbon, Portugal)
2012/03/25 Multifactorial Analysis of Embryonic Stem Cell Self-Renewal Reveals a Crucial Role of GSK-3-mediated Signaling at Physiological Oxygen Levels [Presenter] 243rd American Chemical Society National Meeting & Exposition
American Chemical Society (ACS) (San Diego, United States)
2011/12/02 Towards Fully Defined Culture Systems for Human Induced Pluripotent Stem Cell Expansion [Contributing author] MicroBiotec’11
Portuguese Society of Biotechnology (Braga, Portugal)
2011/04/28 Application of a Central Composite Design for Modeling Mouse Embryonic Stem Cell Self-Renewal at Different O2 Levels [Presenter] 6th International Meeting of the Portuguese Society for Stem Cells and Cell Therapy (SPCE-TC)
Portuguese Society for Stem Cells and Cell Therapies (Cantanhede, Portugal)
2011/03/27 Three-Dimensional Cell Culture Microarray for High-Throughput Studies of Stem Cell Fate [Presenter] 241st American Chemical Society National Meeting & Exposition
American Chemical Society (ACS) (Anaheim, United States)
2011/03/01 Exploring Embryonic Stem Cell fate using Cellular Microarrays [Presenter] 1st Portuguese Meeting in Bioengineering
Institute of Electrical and Electronics Engineers ( IEEE (Oeiras, Portugal)
2011/03/01 Effect of Hypoxia on Proliferation and Neural Commitment of Embryonic Stem Cells at Different Stages of Pluripotency [Presenter] 1st Portuguese Meeting in Bioengineering
Institute of Electrical and Electronics Engineers (IEEE) (Oeiras, Portugal)
2010/11/28 Stem Cells: High-Throughput Cellular Microarray Platforms and Applications in Drug Discovery [Invited Lecture, Presenter] 2nd National Meeting on Medicinal Chemistry
Portuguese Chemical Society (Coimbra, Portugal)
2010/10/17 Monitoring Stem Cell Cultivations with NIR Spectroscopy [Contributing author] Federation of Analytical Chemistry and Spectroscopy Societies Conference
Federation of Analytical Chemistry and Spectroscopy Societies (Raleigh, United States)
2010/05/02 Effect of Hypoxia on Proliferation and Neural Commitment of Embryonic Stem Cells at Different Stages of Pluripotency [Presenter] SBE’s 2nd International Conference on Stem Cell Engineering
American Institute of Chemical Engineers (AIChE) (Boston, United States)
2009/07/29 Multi-Scale Strategies for Embryonic Stem Cell Culture [Contributing author] Ciência 2009
Fundação para a Ciência e a Tecnologia (FCT) (Lisbon, Portugal)
2008/09/07 Exploring Stem Cell Fate Using Three-Dimensional Cellular Microarrays [Presenter] 7th European Symposium on Biochemical Engineering Science - Malcolm Lilly Award Lecture
European Symposium on Biochemical Engineering Science (Faro, Portugal)
2008/09/07 A High-Throughput 3D Cell Microarray to Study Stem Cell Fate [Presenter] 7th European Symposium on Biochemical Engineering Science - Malcolm Lilly Award Lecture
European Symposium on Biochemical Engineering Science (Faro, Portugal)
2008/09/04 Micro-scale and Bioreactor Systems for the Expansion of mouse embryonic stem (mES) cells [Contributing author] CHEMPOR 2008 - 10th International Chemical and Biological Engineering Conference
Ordem dos Engenheiros (the Portuguese Engineers Association) (Braga, Portugal)
2008/04/23 Large-Scale and Nano-Scale Approaches for the Expansion of Mouse Embryonic Stem (mES) Cells [Contributing author] 3rd International Meeting of the Portuguese Society for Stem Cells and Cell Therapy (SPCE-TC)
Portuguese Society for Stem Cells and Cell Therapies (Faro, Portugal)
2008/01/20 A High-Throughput 3D Cell Microarray to Study Stem Cell Fate [Contributing author] SBE’s 1st International Conference on Stem Cell Engineering
American Institute of Chemical Engineers (AIChE) (Coronado Island, United States)
2007/11/30 Optimization of Expansion and Neural Commitment of Mouse Embryonic Stem Cells [Contributing author] MicroBiotec’2007
Portuguese Society of Biotechnology (Lisbon, Portugal)
2007/08/19 Tracking Stem Cell Fate Using a Cell-Based Microscale Platform [Presenter] 234th American Chemical Society Fall National Meeting
American Chemical Society (ACS) (Boston, United States)
2006/08/27 Optimization and Integration of the Expansion and Neural Commitment of Mouse Embryonic Stem Cells [Contributing author] 6th European Symposium on Biochemical Engineering Science
European Symposium on Biochemical Engineering Science (Salzburg, Austria)

Supervision

Thesis Title
Role
Degree Subject (Type)
Institution / Organization
2021/03 - 2025/03 Modelling Rett Syndrome with brain organoids derived from patient-specific human induced pluripotent stem cells for personalized medicine
Co-supervisor of Miguel Tenreiro
Bioengenharia (PhD)
Universidade de Lisboa Instituto Superior Técnico, Portugal
2022/02 - 2022/11 Characterization of effects of SNORD87 and SNORD88 on the physiology and aging of skin cells
Co-supervisor of Marta Luísa Esteves da Rocha
Biological Engineering (Master)
Universidade de Lisboa Instituto Superior Técnico, Portugal
2022/02 - 2022/11 Using CRISPR-Cas9 to generate an Isogenic Cell Line from Patient-Derived Human Induced Pluripotent Stem Cells to model Niemann-Pick Type C1 Cerebellar Ataxia
Co-supervisor of João Rafael Camões dos Santos
Biological Engineering (Master)
Universidade de Lisboa Instituto Superior Técnico, Portugal
2022/02 - 2022/11 Modelling and characterizing mitochondria transfer from human Mesenchymal stromal cells to Haematopoietic stem cells
Co-supervisor of João Maria Restolho Mateus Pinheiro
Biological Engineering (Master)
Universidade de Lisboa Instituto Superior Técnico, Portugal
2022/02 - 2022/11 Molecular effects of a novel SNCA mutation associated with Parkinson’s disease
Co-supervisor of Ana Rita Landeiro Filipe de Sousa
Biological Engineering (Master)
Universidade de Lisboa Instituto Superior Técnico, Portugal
2022/02 - 2022/11 Development of a novel high-throughput 3D liver model, with a focus on iPSC-derived hepatic stellate cells and their co-culture with iPSC-derived hepatocytes
Co-supervisor of Ana Carolina Correia
Biological Engineering (Master)
Universidade de Lisboa Instituto Superior Técnico, Portugal
2021/09 - 2022/11 Studying miR-34a mediated gene regulation during hepatic embryogenesis
Co-supervisor of Madalena Pereira de Freitas
Biotechnology (Master)
Universidade de Lisboa Instituto Superior Técnico, Portugal
2018 - 2022 3D Cellular Microarray Platform for human pluripotent stem cell culture and toxicology screenings
Supervisor of André Rodrigues
Bioengenharia (PhD)
Universidade de Lisboa Instituto Superior Técnico, Portugal
2018 - 2022 Scalable production of mature neuronal subtypes from cerebellar organoids in dynamic 3D conditions to model Angelman Syndrome
Supervisor of Carina Maranga
Bioengenharia (PhD)
Universidade de Lisboa Instituto Superior Técnico, Portugal
2018 - 2022 Human liver organoids for in vitro disease modelling and drug screening
Supervisor of João Cotovio
Bioengenharia (PhD)
Universidade de Lisboa Instituto Superior Técnico, Portugal
2021/03 - 2021/11 Modelling Angelman syndrome in CRISPR-edited isogenic iPSCs
Co-supervisor of Alípio Gomes
Engenharia Biológica (Master)
Universidade de Lisboa Instituto Superior Técnico, Portugal
2021/03 - 2021/11 iPSC-derived mammary organoids to study the onset of malignant transformation triggered by BRCA mutations
Co-supervisor of Eunice Gonçalves
Engenharia Biológica (Master)
Universidade de Lisboa Instituto Superior Técnico, Portugal
2020/09 - 2021/11 Engineering the Formation of Vascular Networks in Human Forebrain Organoids
Supervisor of Maria Augusta Batista
Biologia Molecular e Genética (Master)
Universidade de Lisboa Faculdade de Ciências, Portugal
2020/03 - 2021/06 Design of a Microfluidic Cell Culture Chamber to Evaluate Sustained Small Molecule Release Methods
Co-supervisor of David Alves
Bioengenharia e Nanossistemas (Master)
Universidade de Lisboa Instituto Superior Técnico, Portugal
2020/03 - 2021/01 Engineered Heart Tissues for Cardiovascular Disease Modeling
Co-supervisor of Beatriz Gamelas
Engenharia Biológica (Master)
Universidade de Lisboa Instituto Superior Técnico, Portugal
2017 - 2021 Engineering region-specific brain organoids from human induced pluripotent stem cells for disease modelling of neurodevelopmental disorders
Co-supervisor of Ana Rita Gomes
Bioengenharia (PhD)
Universidade de Lisboa Instituto Superior Técnico, Portugal
2016 - 2020 Affinity induced gels to guide stem cell differentiation
Co-supervisor of Cláudia Fernandes
Bioengenharia (PhD)
Universidade Nova de Lisboa Faculdade de Ciências e Tecnologia, Portugal
2019/03 - 2019/11 Effects of AD organoid-derived secretome on microglia phenotypic alterations
Co-supervisor of Ricardo Paiva
Engenharia Biológica (Master)
Universidade de Lisboa Instituto Superior Técnico, Portugal
2018 - 2019 Transcriptomic deconvolution of alterations in cellular composition and cell type-specific molecular changes associated with ageing of human tissues
Co-supervisor of Arthur Schneider
Biotecnologia (Master)
Universidade de Lisboa Instituto Superior Técnico, Portugal
2018 - 2019 Population-Level Dynamics of Human Pluripotent Stem Cell Fate Transitions
Supervisor of Joana Saraiva
Biologia Molecular e Genética (Master)
Universidade de Lisboa Faculdade de Ciências, Portugal
2018 - 2018 Production of ferritin nanocages for the diagnosis and therapy of tumours
Co-supervisor of Beatriz Pereira
Engenharia Biológica (Master)
Universidade de Lisboa Instituto Superior Técnico, Portugal
2018 - 2018 Vascularization of hiPSC derived cardiac tissues
Co-supervisor of Lara Mil-Homens
Engenharia Biológica (Master)
Universidade de Lisboa Instituto Superior Técnico, Portugal
2018 - 2018 Generation of gene-edited cerebellar organoids for disease modelling
Co-supervisor of Joaquim Godinho
Engenharia Biomédica (Master)
Universidade de Lisboa Instituto Superior Técnico, Portugal
2018 - 2018 A disease modelling approach for Angelman syndrome based on neuronal differentiation of patient-derived iPSCs
Supervisor of Ana Guerreiro
Engenharia Biológica (Master)
Universidade de Lisboa Instituto Superior Técnico, Portugal
2017 - 2018 Definitive Endoderm Induction and Hepatic Differentiation of Human Pluripotent Stem Cells
Supervisor of Rodrigo Pedroso
Biotecnologia (Master)
Universidade de Lisboa Instituto Superior Técnico, Portugal
2015 - 2018 Novel bioengineering strategies for modeling cerebellar ataxias
Co-supervisor of Teresa Pereira da Silva
Bioengenharia (PhD)
Universidade de Lisboa Instituto Superior Técnico, Portugal
2017 - 2017 Cardiac Differentiation of Human Pluripotent Stem Cells in Scalable Suspension Culture under Chemically Defined Conditions
Supervisor of Mariana Pina
Engenharia Biomédica (Master)
Universidade de Lisboa Instituto Superior Técnico, Portugal
2016 - 2017 Role of Tauroursodeoxycholic Acid during Expansion and Neural Commitment of Human Induced Pluripotent Stem Cells under Chemically-defined Conditions
Supervisor of Maria Leonor Matos Resina
Engenharia Biológica (Master)
Universidade de Lisboa Instituto Superior Técnico, Portugal
2016 - 2017 Uncovering the basis of dynamic Wnt expression patterns in mammary gland development and breast cancer
Co-supervisor of Cátia Rodrigues Pereira
Biotecnologia (Master)
Universidade de Lisboa Instituto Superior Técnico, Portugal
2016 - 2016 Derivation, Characterization and Purification of Multipotent Cardiovascular Progenitor Cells Derived from Human Induced Pluripotent Stem Cells
Co-supervisor of Diogo Nogueira
Engenharia Biológica (Master)
Universidade de Lisboa Instituto Superior Técnico, Portugal
2016 - 2016 Role of Tauroursodeoxycholic Acid (TUDCA) During Expansion and Neural Commitment of Human Induced Pluripotent Stem Cells (hiPSC) under Chemically-Defined Conditions
Co-supervisor of Ana Rita Gomes
Engenharia Biológica (Master)
Universidade de Lisboa Instituto Superior Técnico, Portugal
2016 - 2016 Comprehensive Study of the Stability of Genomic Imprinting During iPSC Reprogramming
Co-supervisor of João Paulo Lopes
Engenharia Biomédica (Master)
Universidade de Lisboa Instituto Superior Técnico, Portugal
2016 - 2016 3D microfluidic stem cell cultures
Co-supervisor of Joana Moura
Engenharia Biológica (Master)
Universidade de Lisboa Instituto Superior Técnico, Portugal
2016 - 2016 Effect of plant extracts on human skin aging
Co-supervisor of André Branco
Engenharia Biológica (Master)
Universidade de Lisboa Instituto Superior Técnico, Portugal
2011 - 2016 Integrated Platform for Expansion and Controlled Neural Differentiation of Human Pluripotent Stem Cells (hPSC) in a Xeno-free chemically-defined Suspension System
Co-supervisor of Cláudia Miranda
Biotecnologia (PhD)
Universidade de Lisboa Instituto Superior Técnico, Portugal
2011 - 2016 Understanding Signaling Dynamics in Human Pluripotent Stem Cells: A Systems Biology Approach
Co-supervisor of Tiago Dias
Biotecnologia (PhD)
Universidade de Lisboa Instituto Superior Técnico, Portugal
2015 - 2015 Serum-free and Feeder-free Expansion of a patient-specific Fanconi Anemia Human Induced Pluripotent Stem Cell (hiPSC) line corrected by gene editing
Co-supervisor of André Silva
Engenharia Biomédica (Master)
Universidade de Lisboa Instituto Superior Técnico, Portugal
2015 - 2015 Role of Tauroursodeoxycholic Acid during Expansion and Neural Commitment of Human Induced Pluripotent Stem Cells under Chemically-defined Conditions
Co-supervisor of Joana Pinho
Engenharia Biomédica (Master)
Universidade de Lisboa Instituto Superior Técnico, Portugal
2014 - 2014 Scalable Expansion of Human induced Pluripotent Stem Cells (hiPSC) under Xeno-free Conditions
Co-supervisor of Cláudia Cordeiro
Engenharia Biológica (Master)
Universidade de Lisboa Instituto Superior Técnico, Portugal
2014 - 2014 Rett Syndrome Modeling from Human Induced Pluripotent Stem Cells Using a Monolayer Culture System
Co-supervisor of Ana Raquel Porteira
Engenharia Biomédica (Master)
Universidade de Lisboa Instituto Superior Técnico, Portugal
2011 - 2012 Integrated Platform for the Expansion and Neuronal Differentiation of Human Induced Pluripotent Stem (hiPS) Cells
Co-supervisor of Andreia Matos
Biotecnologia (Master)
Universidade de Lisboa Instituto Superior Técnico, Portugal
2010 - 2011 Molecular Mechanisms Underlying Modulation of Mouse Embryonic Stem (ES) Cell Self-Renewal under Different Oxygen Tensions
Co-supervisor of Tiago Dias
Biotecnologia (Master)
Universidade de Lisboa Instituto Superior Técnico, Portugal
2010 - 2011 Establishment of Culture conditions for Expansion and Neural Differentiation of Human Induced Pluripotent Stem (hiPS) Cells
Co-supervisor of Cláudia Miranda
Biotecnologia (Master)
Universidade de Lisboa Instituto Superior Técnico, Portugal

Jury of academic degree

Topic
Role
Candidate name (Type of degree)
Institution / Organization
2023/01 Modulation and Initiation of Movement by Proprioceptors in Drosophila melanogaster
Thesis Member
Alexandra Martins de Medeiros Vieira da Silva (PhD)
Universidade de Lisboa Instituto Superior Técnico, Portugal
2022/11 Harnessing the therapeutic potential of activated group 2 innate lymphoid cells in renal diseases
President of the jury
Luana Rodrigues Macedo (Master)
Universidade de Lisboa Instituto Superior Técnico, Portugal
2022/11 Optimization of Hematopoietic Stem/Progenitor Cell - Mesenchymal Stromal Cell Co-cultures
President of the jury
João Ribeiro Henriques (Master)
Universidade de Lisboa Instituto Superior Técnico, Portugal
2022/11 Converting microglia into induced neural stem cells: Toward a transdifferentiation system applicable in vitro and in situ
President of the jury
Miguel de Araújo Godinho Henriques Pereira (Master)
Universidade de Lisboa Instituto Superior Técnico, Portugal
2022/11 iPSC maturation via hyperosmolarity-induced growth arrest to drive hepatocyte differentiation
(Thesis) Main arguer
Rita Pires de Almeida (Master)
Universidade de Lisboa Instituto Superior Técnico, Portugal
2022/04 Elucidating mechanisms of damage-induced stem cell activation in the adult Drosophila brain
Thesis Member
Mariana Batista Santos (PhD)
Universidade de Lisboa Instituto Superior Técnico, Portugal
2022/02 Unveiling new regulators of flow-dependent endothelial cell polarization
Thesis Member
Catarina Gonçalves Fonseca (PhD)
Universidade de Lisboa Instituto Superior Técnico, Portugal
2021 PhD in Bioengineering and Regenerative Medicine, “Bioprocess development for scalable generation of functional liver micro-tissues/organoids from human pluripotent stem cells”
Thesis Member
Saeed A. Alizadeh (PhD)
Universidade de Lisboa Instituto Superior Técnico, Portugal
2019 PhD in Bioengineering, MIT-P program, “Development of a 3D microarray platform for the study of hPSC growth and differentiation”
Thesis Member
Jorge Pascoal (PhD)
Universidade de Lisboa Instituto Superior Técnico, Portugal
2019 PhD in Bioengineering and Regenerative Medicine, “Modeling Radiation Injury and Countermeasure Drug Responses in a Human Intestine Chip”
Thesis Member
Sasan Jalili Firoozinezhad (PhD)
Universidade de Lisboa Instituto Superior Técnico, Portugal
2019 PhD in Bioengineering and Regenerative Medicine, “Conductive electrospun nanofibers for neuron regeneration”
Thesis Member
Fábio Garrudo (PhD)
Universidade de Lisboa Instituto Superior Técnico, Portugal
2019 Master of Science Degree in Biological engineering, “Surface modification strategies for microfluidic devices
(Thesis) Main arguer
Patrícia Canané (Master)
Universidade de Lisboa Instituto Superior Técnico, Portugal
2018 Master of Science Degree in Bioengineering and Nanosystems, “Peripheral molecular targets for adiposity control”
(Thesis) Main arguer
Rui Costa (Master)
Universidade de Lisboa Instituto Superior Técnico, Portugal
2018 Master of Science Degree in Biomedical Engineering, “Influence of 3D bioprinting on cell behavior and capillary formation”
(Thesis) Main arguer
Ana Sobreiro (Master)
Universidade de Lisboa Instituto Superior Técnico, Portugal
2018 Master of Science Degree in Biological engineering, “Implementation of hiPSC-ECs in thrombosis-on-a-chip devices
(Thesis) Main arguer
João Pedro Simão (Master)
Universidade de Lisboa Instituto Superior Técnico, Portugal
2018 Master of Science Degree in Biotechnology, “Cryopreservation of Plasmodium sporozoites for whole organism vaccination against malaria”
(Thesis) Main arguer
Rafael de Sousa (Master)
Universidade de Lisboa Instituto Superior Técnico, Portugal
2017 Master of Science Degree in Bioengineering and Nanosystems, “Optimization of a microfluidic device towards a self-assembled BBB-on-a-chip”
(Thesis) Main arguer
Aisen de Sá Vivas (Master)
Universidade de Lisboa Instituto Superior Técnico, Portugal
2017 Master of Science Degree in Molecular Genetics and Biomedicine, “Exploring cell reprogramming techniques for Angelman Syndrome disease modeling”
(Thesis) Main arguer
Mariana Joaquim (Master)
Universidade Nova de Lisboa Faculdade de Ciências e Tecnologia, Portugal
2017 Master of Science Degree in Biological engineering, “Strategies for chondrogenic differentiation of human induced pluripotent stem cells”
(Thesis) Main arguer
Ana Potes Semião (Master)
Universidade de Lisboa Instituto Superior Técnico, Portugal
2016 PhD in Biotechnology, “Bioprocessing of human pluripotent stem cell-derived neural cells for regenerative medicine applications”
Thesis Member
Gonçalo Rodrigues (PhD)
Universidade de Lisboa Instituto Superior Técnico, Portugal
2016 Master of Science Degree in Biomedical Engineering, “Fabrication of transparent and electroconductive scaffolds for neural stem cell culture combining 3D printing and conjugated polymers”
(Thesis) Main arguer
Alexandre Ribeiro (Master)
Universidade de Lisboa Instituto Superior Técnico, Portugal
2016 Master of Science Degree in Biological engineering, “Effects of varying mechanical cues on the vascular differentiation of induced pluripotent stem cells”
(Thesis) Main arguer
Ana Verissímo do Carmo (Master)
Universidade de Lisboa Instituto Superior Técnico, Portugal
2016 Master of Science Degree in Biological engineering, “Quantitative image analysis of cell division dynamics”
(Thesis) Main arguer
Diogo Castro Fernandes (Master)
Universidade de Lisboa Instituto Superior Técnico, Portugal
2015 Master of Science Degree in Biological Engineering, “Haematopoietic differentiation of normal and PU.1 mutated murine embryonic stem cells using hydrogel encapsulation in a HARV bioreactor”
(Thesis) Main arguer
Joana Soares dos Santos (Master)
Universidade de Lisboa Instituto Superior Técnico, Portugal
2015 Master of Science Degree in Biological Engineering, “Hepatocyte differentiation of induced endodermal progenitor cells compared to human embryonic stem cells”
(Thesis) Main arguer
Ana Rita Rosa (Master)
Universidade de Lisboa Instituto Superior Técnico, Portugal
2014 Master of Science Degree in Biological Engineering, “Optimization of culture conditions for artificial blastocysts”
(Thesis) Main arguer
Maria Inês Leite (Master)
Universidade de Lisboa Instituto Superior Técnico, Portugal
2014 Master of Science Degree in Biological Engineering, “Generation of liver specific endothelial cells for co-culture with hepatocytes”
(Thesis) Main arguer
Filipa Martins Ribeiro (Master)
Universidade de Lisboa Instituto Superior Técnico, Portugal
2014 Master of Science Degree in Biological Engineering, “Cell stiffness assessment based on nuclei morphological response to patterned surfaces”
(Thesis) Main arguer
Inês Marques dos Santos (Master)
Universidade de Lisboa Instituto Superior Técnico, Portugal
2013 Master of Science Degree in Biomedical Engineering, “Human mesenchymal stem cell cultivation on natural/synthetic polymeric supports”, ISTécnico, 2013.
(Thesis) Main arguer
Tatiana Matos Sirgado (Master)
Universidade de Lisboa Instituto Superior Técnico, Portugal
2013 Master of Science Degree in Bioengineering and Nanosystems, “Bio functionalization of electrospun poly(epslon-caprolactone) nanofibres to promote neural stem cell adhesion, alignment and expansion”
(Thesis) Main arguer
Inês Frazão Ferreira (Master)
Universidade de Lisboa Instituto Superior Técnico, Portugal
2013 Master of Science Degree in Biomedical Engineering, “Purification of human induced pluripotent stem cell-derived cells for regenerative medicine applications”
(Thesis) Main arguer
Pedro Silva (Master)
Universidade de Lisboa Instituto Superior Técnico, Portugal
2012 Master of Science Degree in Biotechnology, “Expansion of human neural stem cells derived from pluripotent stem cells under xeno-free conditions”
(Thesis) Main arguer
Rita Martins (Master)
Universidade de Lisboa Instituto Superior Técnico, Portugal
2012 Master of Science Degree in Biotechnology, “Ex-vivo expansion of human hematopoietic stem/progenitor cells from the umbilical cord blood for cellular therapy”
(Thesis) Main arguer
António Soure (Master)
Universidade de Lisboa Instituto Superior Técnico, Portugal
2011 Master of Science Degree in Bioengineering and Nanosystems, “Stem cells in microfluidics – Controlling the cellular environment of microspotted stem cells”
(Thesis) Main arguer
David Conceição (Master)
Universidade de Lisboa Instituto Superior Técnico, Portugal
2010 Master of Science Degree in Biomedical Engineering, “Development of Notch signaling biomaterials as a tool to control stem cell behavior”
(Thesis) Main arguer
João Ramos Galante (Master)
Universidade de Lisboa Instituto Superior Técnico, Portugal

Committee member

Activity description
Role
Institution / Organization
2023/01 - Current Coordinator of the Master Degree in Bioengineering: Regenerative and Precision Medicine
Coordinator
Universidade de Lisboa Instituto Superior Técnico, Portugal
2019 - Current Scientific committee of the Masters in Bioengineering and Nanosystems
Member
Universidade de Lisboa Instituto Superior Técnico, Portugal

Consulting

Activity description Institution / Organization
2010 - 2014 Consulting services for Smart Cell Biologics, Dublin, Ireland. Theses activities included participation in international scientific meetings, project development, proposal writing and draft of potential patent application. Smart Cell Biologics, Ireland

Course / Discipline taught

Academic session Degree Subject (Type) Institution / Organization
2022/09 - Current Integrated Biological Engineering Laboratory Biological Engineering (Mestrado) Universidade de Lisboa Instituto Superior Técnico, Portugal
2021/09 - Current Organ Engineering Bioengineering: Regenerative and Precision Medicine (Mestrado) Universidade de Lisboa Instituto Superior Técnico, Portugal
2021/09 - Current Tissue Engineering Biomedical Engineering (Mestrado) Universidade de Lisboa Instituto Superior Técnico, Portugal
2021/09 - Current Topics in Bioengineering Biological Engineering (Mestrado) Universidade de Lisboa Instituto Superior Técnico, Portugal
2017 - Current Systems Bioengineering Engenharia Biológica (Mestrado integrado) Universidade de Lisboa Instituto Superior Técnico, Portugal
2016 - Current Introduction to Biomedical Engineering Engenharia Biomédica (Mestrado integrado) Universidade de Lisboa Instituto Superior Técnico, Portugal
2016 - Current Project in Bioengineering and Nanosystems Bioengenharia e Nanossistemas (Mestrado) Universidade de Lisboa Instituto Superior Técnico, Portugal
2016 - Current Project in Biotechnology Biotecnologia (Mestrado integrado) Universidade de Lisboa Instituto Superior Técnico, Portugal
2014 - Current Cell and Tissue Engineering Engenharia Biológica (Mestrado integrado) Universidade de Lisboa Instituto Superior Técnico, Portugal
2014 - Current Cell and Tissue Engineering Biotecnologia (Mestrado integrado) Universidade de Lisboa Instituto Superior Técnico, Portugal
2014 - Current Stem Cell Bioengineering Engenharia Biológica (Mestrado integrado) Universidade de Lisboa Instituto Superior Técnico, Portugal
2014 - Current Stem Cell Bioengineering Biotecnologia (Mestrado integrado) Universidade de Lisboa Instituto Superior Técnico, Portugal
2014 - 2015 Biomedical Materials and Nanotechnology Bioengenharia e Nanossistemas (Mestrado) Universidade de Lisboa Instituto Superior Técnico, Portugal

Evaluation committee

Activity description
Role
Institution / Organization Funding entity
2019 - 2021 External evaluator for “Spark Grant”
Evaluator
Schweizerischer Nationalfonds zur Förderung der wissenschaftlichen Forschung, Switzerland Schweizerischer Nationalfonds zur Förderung der wissenschaftlichen Forschung
2019 - 2019 External evaluator for “Preludium-17”
Evaluator
Narodowe Centrum Nauki, Poland Narodowe Centrum Nauki
2015 - 2015 External evaluator for “ERC Frontier Research Advanced Grants”
Evaluator
European Research Council, Belgium European Research Council
2011 - 2011 External evaluator for “Programa de estímulo à ciência”
Evaluator
Universidade de Coimbra Faculdade de Medicina, Portugal Universidade de Coimbra Faculdade de Medicina
2010 - 2010 External evaluator for “Open Technologieprogramma”
Evaluator
Technologiestichting STW, Netherlands Technologiestichting STW

Journal scientific committee

Journal title (ISSN) Publisher
2019/10 - 2020/05 Frontiers in Bioengineering and Biotechnology (2296-4185) Frontiers Media SA
2018/10 - 2019/03 Stem Cells International (1687-9678) Hindawi Publishing Corporation (Sage-Hindawi Access to Research)
Distinctions

Other distinction

2016 Young Investigator Award
2011 Best Poster Presentation Award, MicroBiotec’11
2009 Travel Grant Award
2009 Crioestaminal Young Investigator Award
2008 Travel Grant Award
2008 Malcolm Lilly Award