Olga Cristina Pastor Nunes (BA14-BD30-C9AF)

Curriculum Vitae

Olga Cristina Pastor Nunes

Olga C. Nunes is a PhD in Microbiology from the Faculty of Science and Technology of University of Coimbra and is an Associate Professor in Faculty of Engineering of University of Porto. She is a senior researcher of LEPABE, an R&D Unit classified as ¿Excellent¿ by the Portuguese Science Foundation (FCT). Her research has been focused on Environmental Microbiology, namely on Bioremediation and Microbial Ecology and Biodiversity. Her main interests include studying the effects of anthropization on bacterial communities, as well as assessing the associated impacts and methodologies that allow their mitigation. She is (co)-author of 146 articles in leading international scientific periodicals and 29 book chapters. According to Scopus, has an h index of 46 and more than 8300 citations. She supervised and/or supervises 6 Post-doc Fellows, 13 PhD students and more than 47 Master students. Participates and/or participated as Principal investigator in 11 projects, out of which 6 were funded by FCT, 3 by national and international industries and 2 by international cooperation programs. Participates and/or participated as Researcher in 25 national and international projects, including 3 financed by EU and 3 by COST actions. In her curriculum Ciência Vitae the most frequent terms in the context of scientific, technological and artistic-cultural output are: Environmental Sciences and Technologies; Chemical Engineering; Biochemistry Engineering and Biotechnology; Bioremediation; Microbial communities.

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Identification

Personal identification

Full name: Olga Cristina Pastor Nunes

Citation names

Nunes, Olga C.

Author identifiers

Ciência ID: BA14-BD30-C9AF
ORCID iD: 0000-0003-4742-2537
Scopus Author Id: ID 7005088596

Websites

http://paginas.fe.up.pt/~lepabe/ (Professional)
https://sigarra.up.pt/feup/pt/func_geral.formview?p_codigo=240013 (Professional)

Knowledge fields

Natural sciences - Biological Sciences - Microbiology

Languages

Language	Speaking	Reading	Writing	Listening	Peer-review
English	Advanced (C1)	Advanced (C1)	Advanced (C1)	Advanced (C1)

Education

	Degree	Classification
1996 Concluded	Doutoramento em Bioquímica, especialidade em Microbiologia (Doutoramento) Universidade de Coimbra Faculdade de Ciencias e Tecnologia, Portugal "Caracterização e classificação de estirpes do género Rhodothermus" (THESIS/DISSERTATION)	Muito Bom com Louvor e Distinção
1989 Concluded	Biologia - Ramo Científico (Licenciatura) Universidade de Coimbra Faculdade de Ciencias e Tecnologia, Portugal "n/a" (THESIS/DISSERTATION)	14 valores

Affiliation

Teaching in Higher Education

	Category Host institution	Employer
2021/03/29 - Current	Associate Professor (University Teacher)	Universidade do Porto Faculdade de Engenharia, Portugal

2001/03/19 - 2021/03/28	Assistant Professor (University Teacher)	Universidade do Porto Faculdade de Engenharia, Portugal

1998/09/18 - 2001/03/18	Invited Assistant Professor (University Teacher)	Universidade do Porto Faculdade de Engenharia, Portugal

Others

	Category Host institution	Employer
1997/01/01 - 1998/09/15	Post Doc Fellow	Universidade Nova de Lisboa Faculdade de Ciências e Tecnologia, Portugal
	Gesellschaft für Biotechnologische Forschung mbH (GBF), Germany
1996/08/08 - 1996/12/31	Invited Assistant Professor (40%)	Universidade do Porto Faculdade de Engenharia, Portugal

1995/12/29 - 1996/08/07	Invited Lecturer (40%)	Universidade do Porto Faculdade de Engenharia, Portugal

Projects

Grant

	Designation	Funders
2015/01 - 2018/03	Nanofluidics for ultrafast diagnosis of bacterial infections NanoDiaBac Provided by PTCRIS: ENMed/0001/2014 ENMed/0001/2014 - Researcher Universidade Católica Portuguesa, Portugal Universidade Católica Portuguesa Portuguesa Centro de Biotecnologia e Química Fina, Portugal Universidade Católica Portuguesa, Portugal Universidade do Porto Laboratorio de Engenharia de Processos Ambiente Biotecnologia e Energia, Portugal	Fundação para a Ciência e a Tecnologia Concluded
2007/11 - 2011/04	Characterization of a new metabolic pathway: mineralization of the herbicide molinate Acção Nº A-4/07 Co-Principal Investigator (Co-PI) Helmholtz-Zentrum für Infektionsforschung Abteilung Genregulierung und -differenzierung, Germany	Deutscher Akademischer Austauschdienst Concluded
2005/09 - 2007/05	Bioremediation of soils and waters contaminated with pesticides Provided by PTCRIS: 59836 POCI/AMB/59836/2004 Universidade do Porto Laboratorio de Engenharia de Processos Ambiente Biotecnologia e Energia, Portugal Universidade do Porto Faculdade de Engenharia, Portugal Instituto de Biologia Experimental e Tecnológica, Portugal Universidade Católica Portuguesa, Portugal	Fundação para a Ciência e a Tecnologia Concluded
1994/10 - 1995/09	CLASSIFICAÇÃO E CARACTERIZAÇÃO DE ESTIRPES DO GÉNERO RHODOTHERMUS Provided by PTCRIS: PRAXIS XXI/BD/3909/94 PRAXIS XXI/BD/3909/94 PhD Student Fellow	Fundação para a Ciência e a Tecnologia Concluded

Contract

	Designation	Funders
2022/10/01 - Current	Aquaponics from WAstewater REclamation 101084245 Researcher Universidade do Porto Faculdade de Engenharia, Portugal	European Union Ongoing
2022/10/01 - Current	H2 como vetor de metanol verde para indústria química e mobilidade pesada PRR - C644923817-00000037 Researcher	Agência para a Competitividade e Inovação IP Ongoing
2023/03/01 - 2026/02/28	STereoselective environmental processes in Antibiotics: role for Resistance 2022.02842.PTDC 10.54499/2022.02842.PTDC Researcher Universidade do Porto Faculdade de Engenharia, Portugal Universidade do Porto Faculdade de Farmácia, Portugal Cooperativa de Ensino Superior Politécnico e Universitário CRL, Portugal Universidade Católica Portuguesa, Portugal	Fundação para a Ciência e a Tecnologia Ongoing
2021/01/01 - 2025/12/31	ALICE - Associate Laboratory in Chemical Engineering LA/P/0045/2020 10.54499/LA/P/0045/2020 Universidade do Porto Laboratorio de Engenharia de Processos Ambiente Biotecnologia e Energia, Portugal Universidade do Porto Faculdade de Engenharia, Portugal Universidade do Porto Centro de Estudos de Fenómenos de Transporte, Portugal Universidade do Porto Laboratório de Processos de Separação e Reacção Laboratório de Catálise e Materiais, Portugal Instituto Politécnico de Leiria, Portugal	Fundação para a Ciência e a Tecnologia Ongoing
2022/05/17 - 2025/05/16	Promoting healthy indoor environments with spotlight on endocrine disruptors: elucidating the links between environmental exposure, neurodevelopment and social behavior in children PTDC/CTA-AMB/3040/2021 10.54499/PTDC/CTA-AMB/3040/2021 Researcher Universidade do Porto Laboratorio de Engenharia de Processos Ambiente Biotecnologia e Energia, Portugal Universidade do Porto Faculdade de Engenharia, Portugal Universidade do Porto Instituto de Saúde Pública, Portugal	Fundação para a Ciência e a Tecnologia Ongoing
2022/01/01 - 2024/12/31	Light effect on photobioreactor design for microalgae cultivation: enhancement of photosynthetic efficiency and biomass value PTDC/BTA-BTA/2902/2021 10.54499/PTDC/BTA-BTA/2902/2021 Researcher Universidade do Porto Laboratorio de Engenharia de Processos Ambiente Biotecnologia e Energia, Portugal Universidade do Porto Faculdade de Engenharia, Portugal Universidade do Porto Laboratório de Processos de Separação e Reacção Laboratório de Catálise e Materiais, Portugal Centro Tecnológico das Indústrias Têxtil e do Vestuário de Portugal, Portugal	Fundação para a Ciência e a Tecnologia Ongoing
2020/01/01 - 2023/12/31	Laboratory for Process Engineering, Environment, Biotechnology and Energy UIDB/00511/2020 10.54499/UIDB/00511/2020 Universidade do Porto Laboratorio de Engenharia de Processos Ambiente Biotecnologia e Energia, Portugal Universidade do Porto Faculdade de Engenharia, Portugal	Fundação para a Ciência e a Tecnologia Concluded
2020/01/01 - 2023/12/31	Laboratory for Process Engineering, Environment, Biotechnology and Energy UIDP/00511/2020 10.54499/UIDP/00511/2020 Universidade do Porto Laboratorio de Engenharia de Processos Ambiente Biotecnologia e Energia, Portugal Universidade do Porto Faculdade de Engenharia, Portugal	Fundação para a Ciência e a Tecnologia Concluded
2018/07/01 - 2022/06/30	Identifying and interrupting micropollutants of EU concern by using Smart Carbon materials PTDC/EAM-AMB/31049/2017 Researcher Universidade do Porto, Portugal Universidade do Porto Laboratorio de Engenharia de Processos Ambiente Biotecnologia e Energia, Portugal	Fundação para a Ciência e a Tecnologia Concluded
2018/09/15 - 2021/08/14	Assessing the risks associated with environmental antibiotic resistant bacteria: propagation and transmission to humans POCI-01-0145-FEDER-028196 PTDC/CTA-AMB/28196/2017 Researcher Universidade do Porto Laboratorio de Engenharia de Processos Ambiente Biotecnologia e Energia, Portugal Universidade Católica Portuguesa, Portugal Universidade do Porto, Portugal Universidade Católica Portuguesa, Portugal	Fundação para a Ciência e a Tecnologia Ongoing
2018/10/01 - 2020/03/31	DEPCAT – Demonstration of new equipment involving integrated catalytic processes for the treatment of organic pollutants and water disinfection NORTE-01-0247- FEDER-033330 Researcher Universidade do Porto Laboratorio de Engenharia de Processos Ambiente Biotecnologia e Energia, Portugal	Ongoing
2019/01/01 - 2019/12/31	Laboratory for Process Engineering, Environment, Biotechnology and Energy UID/EQU/00511/2019 Universidade do Porto Laboratorio de Engenharia de Processos Ambiente Biotecnologia e Energia, Portugal Universidade do Porto Faculdade de Engenharia, Portugal	Fundação para a Ciência e a Tecnologia Concluded
2016/06/01 - 2019/12/31	Recognition of microbial functional communities and assessment of the mineralizing potential bioleaching for high-tech critical metals ERA-MIN/0004/2015 Researcher Universidade de Lisboa Centro de Recursos Naturais e Ambiente, Portugal Universidade do Porto Faculdade de Engenharia, Portugal Universidade do Porto Laboratorio de Engenharia de Processos Ambiente Biotecnologia e Energia, Portugal Centro de Recursos Naturais e Ambiente, Portugal	Fundação para a Ciência e a Tecnologia Concluded
2013/07/01 - 2015/10/31	Characterization and application of the novel molinate hydrolase MolA in bioremediation processes PTDC/AAG-TEC/3909/2012 Provided by PTCRIS: 130494 Principal investigator Universidade do Porto Laboratorio de Engenharia de Processos Ambiente Biotecnologia e Energia, Portugal Universidade do Porto Faculdade de Engenharia, Portugal Instituto de Biologia Molecular e Celular, Portugal Universidade do Porto Instituto de Biologia Molecular e Celular, Portugal	Fundação para a Ciência e a Tecnologia Concluded
2014/03 - 2015/06	NEPCAT – New Equipment involving integrated catalytic processes for the treatment of organic pollutants and water disinfection NORTE-07-0202-FEDER-38900 Researcher Universidade do Porto Laboratorio de Engenharia de Processos Ambiente Biotecnologia e Energia, Portugal	Concluded
2015 - 2015	Removal of emerging contaminants and pathogens from wastewaters by using advanced technologies (EConPath) PSA_SISINF Researcher Universidade do Porto Laboratorio de Engenharia de Processos Ambiente Biotecnologia e Energia, Portugal	Concluded
2011/04/01 - 2014/09/30	Elimination of micropollutants with antimicrobial activity from wastewaters PTDC/AAC-AMB/113091/2009 Provided by PTCRIS: 113091 Principal investigator Universidade do Porto Laboratorio de Engenharia de Processos Ambiente Biotecnologia e Energia, Portugal Universidade do Porto Faculdade de Engenharia, Portugal Universidade do Porto Faculdade de Farmácia, Portugal Universidade do Porto Laboratório de Processos de Separação e Reacção Laboratório de Catálise e Materiais, Portugal Universidade Católica Portuguesa, Portugal Universidade Católica Portuguesa Portuguesa Centro de Biotecnologia e Química Fina, Portugal Associação para a Inovação e Desenvolvimento da FCT, Portugal Universidade Católica Portuguesa, Portugal	Fundação para a Ciência e a Tecnologia Concluded
2011/03/01 - 2014/08/31	Alkaline hydrolysis of health care infectious wastes PTDC/SAU-SAP/114855/2009 Researcher Universidade do Porto Laboratorio de Engenharia de Processos Ambiente Biotecnologia e Energia, Portugal Universidade do Porto Faculdade de Engenharia, Portugal	Fundação para a Ciência e a Tecnologia Concluded
2011/03 - 2014/08	DYNAMICS OF ANTIMICROBIAL RESISTANCE BETWEEN THE HOSPITAL AND THE ENVIRONMENT Provided by PTCRIS: 113840 PTDC/AAC-AMB/113840/2009 Researcher Universidade do Porto Laboratorio de Engenharia de Processos Ambiente Biotecnologia e Energia, Portugal Universidade Católica Portuguesa, Portugal Portuguesa Centro de Biotecnologia e Química Fina, Portugal Universidade do Porto Faculdade de Engenharia, Portugal Universidade Católica Portuguesa, Portugal Universidade Católica Portuguesa Portuguesa Centro de Biotecnologia e Química Fina, Portugal Universidade Católica Portuguesa Centro Regional do Porto, Portugal	Fundação para a Ciência e a Tecnologia Concluded
2011/01 - 2014/06	Nanohydroxyapatite antibacterial surfaces to prevent biofilm associated bone infection (NaNOBiofilm) Provided by PTCRIS: 111233 PTDC/SAU-BMA/111233/2009 Researcher Instituto Nacional de Engenharia Biomédica, Portugal Centro Hospitalar Universitário do Porto EPE, Portugal Universidade do Porto Faculdade de Engenharia, Portugal Universidade do Porto Laboratorio de Engenharia de Processos Ambiente Biotecnologia e Energia, Portugal Universidade do Porto Instituto de Biologia Molecular e Celular, Portugal Centro Hospitalar Universitário de Santo António, Portugal	Fundação para a Ciência e a Tecnologia Concluded
2011/01/01 - 2013/12/31	Strategic Project - UI 528 - 2011-2012 PEst-OE/AGR/UI0528/2011 PEst-C/EQB/UI0511/2011 Universidade de Lisboa Centro de Investigação em Agronomia Alimentos Ambiente e Paisagem, Portugal Universidade de Lisboa Instituto Superior de Agronomia, Portugal Universidade do Porto Laboratorio de Engenharia de Processos Ambiente Biotecnologia e Energia, Portugal Universidade do Porto Faculdade de Engenharia, Portugal	Fundação para a Ciência e a Tecnologia Concluded
2009/02 - 2012/01	Development of photocatalytic paint coatings for environment NOx abatement and with photobiocid and selfclean properties SI IDT – 5365/2008 SI IDT 5365/2008 Researcher	Agência Nacional de Inovação SA
2009 - 2012	Security and decontamination of drinking water distribution systems following a deliberate contamination Contract nº 217976 Researcher	European Commission Seventh Framework Programme for Research and Technological Development Small Medium Enterprises
2010/01/01 - 2011/12/31	Characterization of molinate degradation enzymes (Acção Nº A-5/10 Principal investigator Universidade do Porto Laboratorio de Engenharia de Processos Ambiente Biotecnologia e Energia, Portugal	Deutscher Akademischer Austauschdienst Concluded
2011/01/01 - 2011/04/30	Assessment of antibacterial activity of cork floorings Contrato de Prestação de Serviços Principal investigator Universidade do Porto Laboratorio de Engenharia de Processos Ambiente Biotecnologia e Energia, Portugal	Amorim Revestimentos Concluded
2007/11/01 - 2011/04	Characterization of a new metabolic pathway: mineralization of the herbicide molinate info:eu-repo/grantAgreement/FCT/5876-PPCDTI/66653/PT Principal investigator Universidade do Porto Laboratorio de Engenharia de Processos Ambiente Biotecnologia e Energia, Portugal	Fundação para a Ciência e a Tecnologia Concluded
2008/01/01 - 2011/03/31	Tracking antibiotic resistance bacteria in drinking water: from the source to the tap PTDC/AMB/70825/2006 Provided by PTCRIS: 70825 PTDC/AMB/71236/2006 Researcher Universidade Católica Portuguesa, Portugal Portuguesa Centro de Biotecnologia e Química Fina, Portugal Instituto Nacional de Saúde Doutor Ricardo Jorge, Portugal Universidade do Porto Faculdade de Engenharia, Portugal Universidade do Porto Laboratorio de Engenharia de Processos Ambiente Biotecnologia e Energia, Portugal Universidade Católica Portuguesa, Portugal Universidade Católica Portuguesa Portuguesa Centro de Biotecnologia e Química Fina, Portugal Instituto Nacional de Saúde Doutor Ricardo Jorge, Portugal Universidade Católica Portuguesa Escola Superior de Biotecnologia, Portugal	Fundação para a Ciência e a Tecnologia Concluded
2007/11/01 - 2011/01/31	FUNCTIONALIZED MICRO- AND NANOSTRUCTURES TO COMBAT BIOFOULING OF INDUSTRIAL SURFACES PTDC/EQU-EQU/67982/2006 Provided by PTCRIS: 67982 info:eu-repo/grantAgreement/FCT/5876-PPCDTI/67982/PT Researcher Universidade do Porto Laboratorio de Engenharia de Processos Ambiente Biotecnologia e Energia, Portugal Universidade do Porto Faculdade de Engenharia, Portugal	Fundação para a Ciência e a Tecnologia Concluded
2010/01/01 - 2010/11/30	The use of prokariotic organisms for biofixation of CO2 from thermoelectric power plants - Part II Contrato de Prestação de Serviços Principal investigator Universidade do Porto Laboratorio de Engenharia de Processos Ambiente Biotecnologia e Energia, Portugal	Enel Produzione S.p.A. Concluded
2007/09 - 2010/08	Municipal wastewater treatment and antibiotic resistance dissemination PTDC/AMB/71236/2006 Provided by PTCRIS: 71236 Researcher Universidade do Porto Laboratorio de Engenharia de Processos Ambiente Biotecnologia e Energia, Portugal Universidade Católica Portuguesa, Portugal Portuguesa Centro de Biotecnologia e Química Fina, Portugal Agência Portuguesa do Ambiente, Portugal Universidade do Porto Faculdade de Engenharia, Portugal Universidade Católica Portuguesa, Portugal Universidade Católica Portuguesa Portuguesa Centro de Biotecnologia e Química Fina, Portugal Agência Portuguesa do Ambiente, Portugal Universidade Católica Portuguesa Escola Superior de Biotecnologia, Portugal	Fundação para a Ciência e a Tecnologia Concluded
2009/06/01 - 2009/12/31	The use of prokariotic organisms for biofixation of CO2 from thermoelectric power plants - Part I Contrato de Prestação de Serviços Principal investigator Universidade do Porto Laboratorio de Engenharia de Processos Ambiente Biotecnologia e Energia, Portugal	Enel Produzione S.p.A. Concluded
2007/01 - 2009/05	Bioremediation of soils and waters contaminated with pesticides Provided by PTCRIS: 82854 Principal investigator	Fundação para a Ciência e a Tecnologia Concluded
2005/01 - 2008/12	SURFCONT - Minimizing Surface Contamination Effects by On-Line Identification of Deposit Properties 010.6/A057/2005 Researcher	Fundação para a Ciência e a Tecnologia Concluded
2004/01 - 2006/12	Evaluation of the risk of dispersion of antibiotic resistance in municipal waste water treatment plants - Researcher Universidade do Porto Laboratorio de Engenharia de Processos Ambiente Biotecnologia e Energia, Portugal	Fundação Calouste Gulbenkian Concluded
2002/11 - 2006/10	SAFER - Surveillance and control of microbiological stability in drinking water distribution networks Contract nº EVK1-CT-2002-00108 Researcher Universidade do Porto Laboratorio de Engenharia de Processos Ambiente Biotecnologia e Energia, Portugal	European Union Concluded
2003/09 - 2006/08	Tradition, Quality & Safety - traditional fermented meat products POCTI/AGG/39587/2001 Researcher	Fundação para a Ciência e a Tecnologia Concluded
2002/02 - 2005/01	Prevention of fungi contamination (Ocratoxin A) in Port wine and Verde wine AGRO 255 Researcher Universidade do Porto Laboratorio de Engenharia de Processos Ambiente Biotecnologia e Energia, Portugal	Ministério da Agricultura Florestas e Desenvolvimento Rural
2000/11 - 2004/10	Remediation of natural waters contaminated with low concentration of pesticides: combination of a physical and a biological methodology POCTI/ 34274/AGR/2000 Principal investigator Universidade do Porto Laboratorio de Engenharia de Processos Ambiente Biotecnologia e Energia, Portugal	Fundação para a Ciência e a Tecnologia Concluded
2003/03 - 2004/01	Biofilms in tap water pipe lines - Researcher Universidade do Porto Laboratorio de Engenharia de Processos Ambiente Biotecnologia e Energia, Portugal	Águas do Douro e Paiva Concluded
2000/06/01 - 2003/05/31	Biological Degradation of Pesticides - Molinate info:eu-repo/grantAgreement/FCT/POCI/12193/PT Principal investigator	Fundação para a Ciência e a Tecnologia Concluded
2000 - 2000	Degradation of Molinate Procº 423/RFA/OP 411 PIDAC Researcher	Bundesministerium für Bildung und Forschung Dienststelle Berlin Concluded
1997/01/01 - 1998/08/31	BIODEGRADAÇÃO DO HERBICIDA MOLINATO PRAXIS XXI/BPD/9936/96 Provided by PTCRIS: PRAXIS XXI/BPD/9936/96 Post-doc Fellow	Fundação para a Ciência e a Tecnologia Concluded

Other

	Designation	Funders
2021/09/28 - 2025/09/27	FULLRECO4US-Cross-border transfer and development of sustainable resource recovery strategies towards zero waste CA20133 CA20133	European Cooperation in Science and Technology Ongoing
2014 - 2018	New and emergent challenges and opportunities in wastewater reuse Cost Action ES1403 Researcher Universidade do Porto Laboratorio de Engenharia de Processos Ambiente Biotecnologia e Energia, Portugal	European Cooperation in Science and Technology Concluded
2008 - 2012	Detecting evolutionary hot spots of antibiotic resistances in Europe (DARE Cost Action TD0803 DARE Researcher	European Cooperation in Science and Technology

Outputs

Publications

Book chapter	Manaia, C.M.; Vaz-Moreira, I.; Nunes, O.C.. "Pseudogulbenkiania". In Bergey's Manual of Systematics of Archaea and Bacteria, edited by M.E. Trujillo, S. Dedysh, P. DeVos, B. Hedlund, P. Kämpfer, F.A. Rainey and W.B. Whitman. 2023. Célia M. Manaia; Vaz-Moreira, I.,; Nunes, O.C.. "Gulbenkiania". In Bergey’s Manual of Systematics of Archaea and Bacteria. 2022. Nunes, O.C.; Manaia, C.M.; Vaz-Moreira, I.. "Paracandidimonas". In Bergey’s Manual of Systematics of Archaea and Bacteria, edited by F.A. Rainey, P. Kämpfer, M.E. Trujillo, P. DeVos, B. Hedlund, S. Dedysh.. 2022. Durán-Viseras, A.; Manaia, C.M.; Vaz-Moreira, I.,; Nunes, O.C.. "Pusillimonas". In Bergey’s Manual of Systematics of Archaea and Bacteria, edited by F.A. Rainey, P. Kämpfer, M.E. Trujillo, P. DeVos, B. Hedlund, S. Dedysh.. 2022. Durán-Viseras, A.; Manaia, C.M.; Vaz-Moreira, I.,; Nunes, O.C.. "Parapusillimonas.". In Bergey’s Manual of Systematics of Archaea and Bacteria, edited by M.E. Trujillo, S. Dedysh, P. DeVos, B. Hedlund, P. Kämpfer, F.A. Rainey and W.B. Whitman. 2022. Nunes, Olga C.; C.M. Manaia; Ivone Vaz-Moreira. "Schlegelella". In Bergey’s Manual of Systematics of Archaea and Bacteria, edited by W.B. Whitman; F.A. Rainey; P. Kämpfer; M.E..Trujillo; P. DeVos; B. Hedlund; S. Dedysh. Wiley Online Library, 2021. Manaia, C.M.; Vaz-Moreira, I.,; Nunes, Olga C.. "Candidimonas". In Bergey’s Manual of Systematics of Archaea and Bacteria, edited by W.B. Whitman; F.A. Rainey; P. Kämpfer; M.E..Trujillo; P. DeVos; B. Hedlund; S. Dedysh. Wiley Online Library, 2021. Ana Durán-Viseras; Célia M. Manaia; Vaz-Moreira, Ivone; Nunes, Olga C.. "Paludibacterium". In Bergey’s Manual of Systematics of Archaea and Bacteria., edited by W.B. Whitman; F.A. Rainey, P. Kämpfer, M.E. Trujillo, P. DeVos, B. Hedlund, S. Dedysh.. 2021. Published • DOI: 10.1002/9781118960608.gbm01833 Nunes, Olga C.; Vaz-Moreira, I.; Manaia, C.M.. "Alicycliphilus". In Bergey’sManual of Systematics of Archaea and Bacteria, Online © 2015 Bergey’sManual Trust.., edited by W.B. Whitman; F.A. Rainey; P. Kämpfer; M.E..Trujillo; P. DeVos; B. Hedlund; S. Dedysh. John Wiley & Sons, Inc.,, 2020. Accepted Manaia, C.M.; Vaz-Moreira, I.; Nunes, Olga C.. "Caenimicrobium". In Bergey’sManual of Systematics of Archaea and Bacteria, Online © 2015 Bergey’sManual Trust.., edited by W.B. Whitman; F.A. Rainey; P. Kämpfer; M.E..Trujillo; P. DeVos; B. Hedlund. John Wiley & Sons, Inc.,, 2020. Accepted Silva, M.E.; Brás, I.; Cunha-Queda, A.C.; Nunes, O.C.. "Influence of heavy metals fraction on quality of composts". In Wastes: Solutions, Treatments and Opportunities III, edited by Candida Vilarinho; Fernado Castro; Maria de Lurdes Lopes, 293-300. CRC Press, 2019. Published • 10.1201/9780429289798-47 Vaz-Moreira, Ivone; Ferreira, Catarina; Nunes, Olga C.; Manaia, Célia M.; Vaz-Moreira, I.; Ferreira, C.; Nunes, O.C.; Manaia, C.M.. "Sources of Antibiotic Resistance: Zoonotic, Human, Environment.". In Antibiotic Drug Resistance, edited by J. Capelo-Martínez; G. Igrejas, 213-238. John Wiley & Sons, Inc.,, 2019. Published Nunes, Olga C.; Manaia, C.M.; Vaz-Moreira, I.. "Melaminivora". In Bergey’s Manual of Systematics of Archaea and Bacteria, Online © 2015 Bergey’s Manual Trust., edited by W.B. Whitman; F.A. Rainey; P. Kämpfer; M.E..Trujillo; P. DeVos; B. Hedlund; S. Dedysh. John Wiley & Sons, Inc.,, 2019. In press • DOI: 10.1002/9781118960608.gbm01827 Nunes, Olga C.; Manaia, C.M.; Vaz-Moreira, I.. "Oryzisolibacter". In Bergey’s Manual of Systematics of Archaea and Bacteria, Online © 2015 Bergey’s Manual Trust., edited by W.B. Whitman; F.A. Rainey; P. Kämpfer; M.E..Trujillo; P. DeVos; B. Hedlund; S. Dedysh. John Wiley & Sons, Inc.,, 2019. In press • DOI: 10.1002/9781118960608.gbm01828 Manaia, C.M.; Vaz-Moreira, I.; Nunes, Olga C.. "Hydrogenophilus". In Bergey’s Manual of Systematics of Archaea and Bacteria, Online © 2015 Bergey’s Manual Trust., edited by W.B. Whitman; F.A. Rainey; P. Kämpfer; M.E..Trujillo; P. DeVos; B. Hedlund; S. Dedysh. John Wiley & Sons, Inc.,, 2019. In press • DOI: 10.1002/9781118960608.gbm00968.pub2. Manaia, C.M.; Vaz-Moreira, I.; Nunes, Olga C.. "Tepidiphilus". In Bergey’s Manual of Systematics of Archaea and Bacteria, Online © 2015 Bergey’s Manual Trust., edited by W.B. Whitman; F.A. Rainey; P. Kämpfer; M.E..Trujillo; B. Hedlund; S. Dedysh. John Wiley & Sons, Inc.,, 2019. In press • DOI: 10.1002/9781118960608.gbm01831 Vaz-Moreira, I.; Nunes, Olga C.; Manaia, C.M.. "Diaphorobacter". In Bergey’sManual of Systematics of Archaea and Bacteria, Online © 2015 Bergey’sManual Trust.., edited by W.B. Whitman; F.A. Rainey; P. Kämpfer; M.E..Trujillo; P. DeVos; B. Hedlund; S. Dedysh. John Wiley & Sons, Inc.,, 2019. In press • DOI: 10.1002/9781118960608.gbm01826. Vaz-Moreira, I.; Nunes, Olga C.; Manaia, C.M.. "Hydromonas". In Bergey’s Manual of Systematics of Archaea and Bacteria, Online © 2015 Bergey’s Manual Trust., edited by W.B. Whitman; F. A. Rainey; P. Kämpfer; M.E..Trujillo; P. DeVos; B. Hedlund; S. Dedysh. John Wiley & Sons, Inc.,, 2019. In press • DOI: 10.1002/9781118960608.gbm01830. Manaia, C.; Nunes, O.. "Microbial diversity and ecology of bottled water". In Quantitative Microbiology in Food Processing. Modeling the Microbial Ecology, edited by Anderson de Souza Sant’ Ana. John Wiley & Sons, Inc.,, 2017. Published • 10.1002/9781118823071.ch29 Lopes, A.R.; Becerra-Castro, C.; Vaz-Moreira, I.; Silva, M.E.F.; Nunes, O.C.; Manaia, C.M.. "Irrigation with treated wastewater: Potential impacts on microbial function and diversity in agricultural soils". In The Handbook of Environmental Chemistry, edited by Despo Fatta-Kassinos; Dionysios D. Dionysiou; Klaus Kümmerer. Springer-Verlag, 2016. Published • 10.1007/698-2015-346 Pinho, S; Almeida, M; Nunes, O. "Alkaline hydrolysis applied to animal tissues treatment". In WASTES 2015 – Solutions, Treatments and Opportunities, edited by Candida Vilarinho; Fernando Castro, 229-234. Taylor & Francis Group, 2015. Published • 10.1201/b18853-39 Silva, M.E.F.; De Lemos, L.T.; Nunes, O.C.; Cunha-Queda, A.C.. "Correlation between humic-like substances and heavy metals in composts". In Functions of Natural Organic Matter in Changing Environment, edited by Jianming Xu; Jianjun Wu; Yan He. Springer Netherlands, 2013. Published Manaia, C.M.; Vaz-Moreira, I.; Nunes, O.C.. "Antibiotic Resistance in Waste Water and Surface Water and Human Health Implications". In The Handbook of Environmental Chemistry, edited by Damiá Barceló, 173-212. Springer-Verlag, 2012. Published • 10.1007/698_2011_118 Manaia, Célia M.; Nogales, B.; Nunes, Olga C.. "Genus X. Gulosibacter". In Bergey's Manual of Systematic Bacteriology, The Actinobacteria Part A., edited by Michael Goodfellow; Peter Kämpfer; Hans-Jürgen Busse; Martha E. Trujillo; Kenichiro Suzuki; Wolfgang Ludwig; William B. Whitman, 900-904. Springer, 2012. Published Manaia, Célia M.; Nogales, B.; Nunes, Olga C.. "Genus XXI. Pseudoclavibacter". In Bergey’s Manual® of Systematic Bacteriology, The Actinobacteria Part A., edited by Michael Goodfellow; Peter Kämpfer; Hans-Jürgen Busse; Martha E. Trujillo; Kenichiro Suzuki; Wolfgang Ludwig; William B. Whitman, 949-953. Springer US, 2012. Published Nunes, O.C.; C.M. Manaia. "Genus XI. Humibacter.". In The Actinobacteria Part A. Bergey's Manual of Systematic Bacteriology, edited by Michael Goodfellow, Peter Kämpfer, Hans-Jürgen Busse, Martha E. Trujillo, Kenichiro Suzuki, Wolfgang Ludwig and William, 904-906. Heidelberg, 2012. Published Célia M. Manaia; Nunes, Olga C.. "Genus Humibacter". In Bergey¿s Manual® of Systematic Bacteriology, edited by Michael Goodfellow, Peter Kämpfer, Hans-Jürgen Busse, Martha E. Trujillo, Kenichiro Suzuki, Wolfgang Ludwig and William. Springer US, 2012. Célia M. Manaia; Nunes, Olga C.; Nogales, Balbina. "Genus Gulosibacter". In Bergey¿s Manual® of Systematic Bacteriology. Springer US, 2012. 10.1515/9783110548549-007 Nunes, O.C.; Manaia, C.M.. "Municipal wastewater treatment and antibiotic resistance - a case study". In Trends in Water Resources Research, edited by A.B. Prescott; T.U. Barkely, 93-119. Nova Science Publishers, 2008. Published Manaia, C.M.; Nunes, Olga C.. "From planting to harvest: environmental dissipation of the herbicide molinate and proposal of a clean-up methodology". In Environmental Biodegradation Research Focus, edited by B.Y. Wang, 77-100. Nova Science Publishers, 2008. Published
Conference abstract	Amaro, Helena; Joana F. Sousa; Salgado, Eva M.; Pires, José C.M.; Nunes, Olga C.. "Microalgal systems for wastewater tertiary treatment: a promising solution for pollutants removal, disinfection, and reduction of antibiotic resistance genes". Paper presented in Bioremediation/Restoration Processes, Muttenz, 2023. Accepted Moreira, Nuno; Viana, Ana Teresa; Cátia A. L. Graça; RIBEIRO, Ana Rita Lado; Pereira, Mariana; Silva, Adrián Manuel Tavares; Nunes, Olga C.. "Are ozonation by-products the main regrowth drivers after wastewater treatment?". Paper presented in BioRemid2019, Porto, 2019. Biancullo, F.; Moreira, Nuno F.F.; RIBEIRO, Ana Rita Lado; Castro-Silva, S.; Nunes, Olga C.; Faria, Joaquim Luis. "Antibiotics and Antibiotic Resistant Bacteria Removal in Urban Wastewater by Heterogeneous Photocatalysis using UVA-LEDs". Paper presented in XENOWAC II, Limassol, 2018. Iakovides, I.C.; Moreira, Nuno F.F.; Fernandes, T.; RIBEIRO, Ana Rita Lado; Ioannou-Ttofa, L.; Michael-Kordatou, I.; Pereira, M. Fernando R.; et al. "Evaluation of the efficiency of the ozonation process in continuous mode for the removal of phytotoxicity, antibiotics and antibiotic resistance from urban wastewater". Paper presented in XENOWAC II, Limassol, 2018. Moreira, Nuno F.F.; Narciosa-da-Rocha, C.; Polo-López, M.I.; Pastrana-Martínez, L.M.; Faria, Joaquim Luis; Manaia, Célia; Fernández-Ibáñez, P.; Nunes, Olga C.; SILVA, ADRIÁN M.T.. "Microbiological quality of treated water by solar-driven oxidation processes". Paper presented in Microbiotec'17, Porto, 2017. Ivone Cristina Vaz Moreira; Pompeyo Ferro; Olga C. Nunes; Célia Maria Manaia Rodrigues; Vaz-Moreira, Ivone; Ferro, Pompeyo; Nunes, Olga C.; Manaia, Célia M.. "Aminoglycoside resistance in ralstonia pickettii". Paper presented in Microbiotec¿17, Porto, 2017. Published Moreira, Nuno F.F.; Narciosa-da-Rocha, C.; Polo-López, M.I.; Pastrana-Martínez, L.M.; Faria, Joaquim Luis; Célia, Manaia; Fernández-Ibáñez, P.; Nunes, Olga C.; SILVA, ADRIÁN M.T.. "Chemical and biological response of H2O2-assisted heterogeneous photocatalytic systems used on effluents from urban wastewater treatment plants". Paper presented in Europacat 2017, Florence, 2017. Moreira, Nuno F.F.; Narciosa-da-Rocha, C.; Polo-López, M.I.; Pastrana-Martínez, L.M.; Faria, Joaquim Luis; Célia, Manaia; Fernández-Ibáñez, P.; Nunes, Olga C.; SILVA, ADRIÁN M.T.. "Solar Advanced Oxidation Processes for the Treatment of Urban Wastewater: Chemical and Biological Response". Paper presented in 2nd Summer School on Environmental Applications of Advanced Oxidation Processes and Training School on Advanced Treatment Technologies and Contaminants of Emerging Concern, Porto, 2017. Moreira, Nuno F.F.; Narciosa-da-Rocha, C.; Polo-López, M.I.; Pastrana-Martínez, L.M.; Faria, Joaquim Luis; Célia, Manaia; Fernández-Ibáñez, P.; Nunes, Olga C.; SILVA, ADRIÁN M.T.. "Pilot-scale H2O2-assisted heterogeneous photocatalytic treatment of effluents from urban wastewater treatment plants". Paper presented in 2nd Doctoral Congress of Engineering, Porto, 2017. Moreira, Nuno F.F.; Sousa, J.M.; Macedo, G.; RIBEIRO, Ana Rita Lado; Barreiros, L.; Pedrosa, M.; Faria, Joaquim Luis; et al. "Micropollutants, Potential Pathogens and Antibiotic Resistance Genes Inactivation by Photocatalytic Ozonation Using LEDs". Paper presented in SPEA9, Strasbourg, 2016. Moreira, Nuno F.F.; Orge, Carla; Faria, Joaquim Luis; Nunes, Olga C.; Pereira, M. Fernando R.; SILVA, ADRIÁN M.T.. "Integrated catalytic processes for the treatment of organic pollutants and inactivation of microorganisms". Paper presented in XX Encontro Luso-Galego de Química, Porto, 2014.
Conference paper	Silva, M.E.; Araújo, S.; Brás, I.; Lobo, G.; Cordeiro, A.; Faria, M.; Cunha-Queda, A.C.; Nunes, O.C.. "Anaerobic digestion sludge composting—assessment of the star-up process". 2018. 10.1201/9781315206172-13 Ferreira, Catarina; Brito, Margarida; Lameiras, Catarina; Frykholm, Karolin; Saga, Pohjanen; Bikarolla, Santosh K.; Westerlund, Fredrik; Nunes, Olga C.; Manaia, Célia M.. "Carbapenem-resistant klebsiella pneumoniae clinical isolates harbouring similar conjugative plasmids". 2017. Reis, Patrícia J.M.; Homem, Vera; Alves, Arminda; Vilar, Vítor J.P.; Manaia, Célia M.; Nunes, Olga C.. "New insights on mechanisms of sulfonamide bio-transformation by environmental bacteria". 2017.
Conference poster	Abreu-Silva, Joana; Ribeirinho-Soares, Sara; Catarina Ferreira; Rocha, Jaqueline; Nunes, Olga C.; Célia M. Manaia. "Screening of stress effect on the survival of clinical and environmental antibiotic resistant Escherichia coli and Klebsiella pneumoniae isolates". Paper presented in Microbiotec'21, 2021. Sochacki, A. ; Nowrotek, M.; Felis, E.; Gorito, Ana M.; Lopes, A.M. ; Rocha, A.R.; Ribeiro, J. ; et al. "Removal and distribution of diclofenac and sulfamethoxazole in unsaturated and partially-saturated constructed wetlands and the occurrence of sulfonamide resistance genes". Paper presented in 9th International Symposium On Wetland Pollutant Dynamics and Control (WETPOL), 2021. Viana, Ana Teresa; Lopes, Ana Rita; Froufe, Hugo; RIBEIRO, Ana Rita Lado; Muñoz-Mérida, Antonio; Pinho, Diogo; Figueiredo, Joana; et al. "New enzymes of Gulosibacter molinativorax ON4T involved into thiocarbamate herbicide degradation pathway;". Paper presented in Microbiotec'19 Congress, 2019. Ribeirinho, Sara; Graça, Cátia; Abreu-Silva, Joana; Manaia, Célia; Ribeiro, Ana Rita Lado; M. T. Silva, Adrián; Nunes, Olga C.. "Ultrafiltration after ozonation of urban wastewater: tackling bacterial regrowth (speaker)". Paper presented in Microbiotec'19 that took place on 5th, 6th and 7th December 2019 at the University of Coimbra, Portugal, 2019. Sara Ribeiro Soares; Cátia A. L. Graça; Joana Abreu-Silva; Célia M. Manaia; Ana Rita Lado Teixeira Ribeiro; Adrián M. T. Silva; Nunes, Olga C.. "Ultrafiltration after ozonation of urban wastewater: tackling bacterial regrowth". Paper presented in Congress of Microbiology and Biotechnology 2019, 2019. Morais, Daniela F.S.; Moreira, F. C.; I. Saraiva; N. Brôco; S. Antunes; M. Carvalho; Nunes, Olga C.; Vítor J.P. Vilar. "Urban wastewater disinfection using natural sunlight towards reuse in agriculture irrigation". Paper presented in IV Iberoamerican Conference on Advanced Oxidation Processes (IV CIPOA), Natal-RN, Brazil, 2019. Cátia A. L. Graça; Sara Ribeiro Soares; Joana Abreu-Silva; Nunes, Olga C.; Célia M. Manaia; Sérgio C. Silva; Ana Rita Lado Teixeira Ribeiro; Adrián M.T. Silva. "Ultrafiltration as a polishing step after ozonation of urban wastewater: tackling bacterial regrowth". Paper presented in IV Iberoamerican Conference on Advanced Oxidation Processes, 2019. Viana, Ana Teresa; Lopes, Ana Rita; Froufe, Hugo; RIBEIRO, Ana Rita Lado; Muñoz-Mérida, Antonio; Pinho, Diogo; Figueiredo, Joana; et al. "Identification of the biocatalysts involved in molinate breakdown by Gulosibacter molinativorax ON4T". Paper presented in 2nd International Meeting on New Strategies in Bioremediation Processes - BioRemid2019, 2019. fortunato, Gianuario; Vaz-Moreira, Ivone; Nunes, Olga C.; Célia M. Manaia. "Fate of Pseudomonas aeruginosa and bla VIM in soil under selective pressure by copper and zinc". Paper presented in Federation of European Microbiological Society FEMS 2019 conference, Glasgow, Scotland, 2019. A Sofia G G Santos; Patrícia S F Ramalho; Lopes, Ana; Alexandra G Gonçalves; Nunes, Olga C.; M Fernando R Pereira; O Salomé G P Soares. "Nanomaterials application in water disinfection for human consumption". Paper presented in ChemPor 2018, 2018. fortunato, Gianuario; Vaz-Moreira, Ivone; cristina becerra castro; Nunes, Olga C.; Célia M. Manaia. "High limits of quantification of antibiotic resistance genes may mask the impacts of water reuse in soils". Paper presented in Challenges and Solutions related to Xenobiotics and Antimicrobial Resistance in the Framework of Urban Wastewater Reuse: Towards a Blue Circle Society (XENOWAC II), Limassol, Cyprus, 2018. fortunato, Gianuario; Vaz-Moreira, Ivone; Nunes, Olga C.; Célia M. Manaia. "Effect of metals contamination in the survival of antibiotic-resistant bacteria and their genes in soil". Paper presented in Halting Antimicrobial Resistance Dissemination in Aquatic Environments (HEARD2018), Switzerland,, 2018. Biancullo, F.; Moreira, Nuno F.F.; RIBEIRO, Ana Rita Lado; Faria, Joaquim Luis; Castro-Silva, S.; Nunes, Olga C.; SILVA, ADRIÁN M.T.. "UVA-LEDs Heterogeneous Photocatalysis for the Removal of Antibiotics and Antibiotic Resistant Bacteria in Municipal Wastewater". Paper presented in SPEA10, 2018. Moreira, Nuno F.F.; Narciosa-da-Rocha, C.; Polo-López, M.I.; Pastrana-Martínez, L.M.; Faria, Joaquim Luis; Célia, Manaia; Fernández-Ibáñez, P.; Nunes, Olga C.; SILVA, ADRIÁN M.T.. "Urban wastewater treatment by solar advanced oxidation processes: chemical and biological response". Paper presented in SPEA10, 2018. Lopes, Ana; Hugo Froufe; Muñoz-Mérida, Antonio; Joana Figueiredo; Cristina Barroso; Diogo Pinho; Conceição Egas; Nunes, Olga C.. "From genomic and transcriptomic data to the identification of the putative enzymes involved in molinate degradation pathway in Gulosibacter molinativorax ON4T". Paper presented in MicroBiotec17, 2017. Diana Madureira; Lopes, Ana; Nunes, Olga C.; Maria Cristina Vila; António Fiúza. "Use of a microbial community from a mine site for the sustainable recovery of metals". Paper presented in MicroBiotec17, 2017. Lopes, Ana; Vera M Sousa; Berta N. Estevinho; A Mafalda Paiva; J Pedro Leite; Luis M Gales; Fernando Rocha; Nunes, Olga C.. "Molinate bioremediation strategy using a microencapsulation approach". Paper presented in FEMS 2015, 2015. Cristina Becerra-Castro; Lopes, Ana; Vaz-Moreira, Ivone; Elisabete F Silva; Célia M. Manaia; Nunes, Olga C.. "Irrigation with treated wastewater: insights into microbiological implications in soil fertility and in human health". Paper presented in SETAC Europe 25th Annual Meeting, 2015. Lopes, Ana; Diana Bello; Angeles Prieto-Fernández; Carmen Trasar-Cepeda; Célia M. Manaia; Nunes, Olga C.. "Variations in the structure and functional activity of soil microbial communities associated with phase of crop rotation and annual rice cycle". Paper presented in 2nd Thünen Symposium on Soil Metagenomics, 2013. Lopes, Ana; Diana Bello; Angeles Prieto-Fernández; Carmen Trasar-Cepeda; Célia M. Manaia; Nunes, Olga C.. "Crop rotation and cropping phase in rice paddies and their relationship with variations of the soil microbial communities". Paper presented in MicroBiotec13, 2013. Lopes, Ana; Diana Bello; Angeles Prieto-Fernández; Carmen Trasar-Cepeda; Célia M. Manaia; Nunes, Olga C.. "Microbial communities in organically farmed rice fields: the influence of the crop rotation stage". Paper presented in ISME14, 2012. Lopes, Ana; Diana Bello; Angeles Prieto-Fernández; Carmen Trasar-Cepeda; Célia M. Manaia; Nunes, Olga C.. "Is the microbial population and functional activity of bulk paddy soil influenced by rice plants (Oryza sativa)?". Paper presented in MicroBiotec11, 2011. Lopes, Ana; Diana Bello; Angeles Prieto-Fernández; Carmen Trasar-Cepeda; Célia M. Manaia; Nunes, Olga C.. "Effect of rice crop rotation stage on the composition and activity of microbial populations of bulk soil from organically farmed rice fields". Paper presented in MicroBiotec11, 2011. Lopes, Ana; Diana Bello; Angeles Prieto-Fernández; Carmen Trasar-Cepeda; Célia M. Manaia; Nunes, Olga C.. "Does the rice crop rotation stage influence the composition and activity of cultivable microbial populations of bulk soil from organically farmed rice fields?". Paper presented in EGU General Assembly, 2011. Ana Luísa Gonçalves; Cátia Faria; Lopes, Ana; Nunes, Olga C.. "Isolation and characterization of microorganisms able to degrade the herbicide propanil and its recalcitrant metabolite 3,4-dichloroaniline". Paper presented in Congresso Nacional de Bioquímica, 2010. Ricardo Marques; Gilda Carvalho; Lopes, Ana; Cátia Faria; Nunes, Olga C.; Maria A.M. Reis. "Microbial Ecology and Kinetics of Propanil-Degrading Consortia for the Treatment of Contaminated Irrigation Waters". Paper presented in The Water Research Conference, 2010. Lopes, Ana; Cátia Faria; Angeles Prieto-Fernández; Carmen Trasar-Cepeda; Kornelia Smalla; Célia M. Manaia; Nunes, Olga C.. "Effect of conventional agriculture practice in rice paddy field microbiota". Paper presented in FEMS 2009 3rd congress of European Microbiologists, 2009. Cátia Faria; Lopes, Ana; Célia M. Manaia; Nunes, Olga C.. "Microcosm bioremediation assays with soils from biological and conventional rice paddy fields.". Paper presented in FEMS 2009 3rd congress of European Microbiologists, 2009. Lopes, Ana; Luisa Barreiros; Cátia Faria; Inês Duarte; Angeles Prieto-Fernández; Carmen Trasar-Cepeda; Kornelia Smalla; Célia M. Manaia; Nunes, Olga C.. "Assessing the impact of pesticide application on the microbial community of rice field paddy fields". Paper presented in 4th European BioRemediation Conference, 2008. Lopes, Ana; Luisa Barreiros; Inês Duarte; Célia M. Manaia; Nunes, Olga C.. "A case study of a Portuguese rice paddy field with a history of pesticide application.". Paper presented in MICROBIOTEC 07, 2007.
Edited book	Nunes, Olga C.; RIBEIRO, Ana Rita Lado; Silva, Adrián M. T.; Vila, Cristina; Dias, Joana M.; Pires, José C.M.; Azevedo, Nuno; Vilar, Vítor. Book of Proceedings, 2nd International Meeting on New Strategies in Bioremediation Processes. Porto, Portugal. 2019. Published
Journal article	Amaro, H.M.; Salgado, E.M.; Nunes, O.C.; Pires, J.C.M.; Esteves, A.F.. "Microalgae systems - environmental agents for wastewater treatment and further potential biomass valorisation". Journal of Environmental Management 337 (2023): http://www.scopus.com/inward/record.url?eid=2-s2.0-85150199586&partnerID=MN8TOARS. 10.1016/j.jenvman.2023.117678 Venâncio, J.P.F.; Ribeirinho-Soares, S.; Lopes, L.C.; Madeira, L.M.; Nunes, O.C.; Rodrigues, C.S.D.. "Disinfection of treated urban effluents for reuse by combination of coagulation/flocculation and Fenton processes". Environmental Research 218 (2023): http://www.scopus.com/inward/record.url?eid=2-s2.0-85144566984&partnerID=MN8TOARS. 10.1016/j.envres.2022.115028 Abreu-Silva, J.; Ribeirinho-Soares, S.; Oliveira-Inocêncio, I.; Pedrosa, M.; Silva, A.M.T.; Nunes, O.C.; Manaia, C.M.. "Performance of polycarbonate, cellulose nitrate and polyethersulfone filtering membranes for culture-independent microbiota analysis of clean waters". Journal of Environmental Chemical Engineering 11 1 (2023): http://www.scopus.com/inward/record.url?eid=2-s2.0-85144426112&partnerID=MN8TOARS. 10.1016/j.jece.2022.109132 Ferreira, C.; Luzietti, L.; Ribeirinho-Soares, S.; Nunes, O.C.; Vaz-Moreira, I.; Manaia, C.M.. "Survival of clinical and environmental carbapenem-resistant Klebsiella pneumoniae ST147 in surface water". Environmental Research 237 (2023): http://www.scopus.com/inward/record.url?eid=2-s2.0-85168809588&partnerID=MN8TOARS. 10.1016/j.envres.2023.116928 Torres-Pinto, A.; Velo-Gala, I.; Ribeirinho-Soares, S.; Nunes, O.C.; Silva, C.G.; Faria, J.L.; Silva, A.M.T.. "Novel photoelectrochemical 3D-system for water disinfection by deposition of modified carbon nitride on vitreous carbon foam". Environmental Research 237 (2023): http://www.scopus.com/inward/record.url?eid=2-s2.0-85170034415&partnerID=MN8TOARS. 10.1016/j.envres.2023.117019 Presumido, P.H.; Ribeirinho-Soares, S.; Montes, R.; Quintana, J.B.; Rodil, R.; Ribeiro, M.; Neuparth, T.; et al. "Ozone membrane contactor for tertiary treatment of urban wastewater: Chemical, microbial and toxicological assessment". Science of the Total Environment 892 (2023): http://www.scopus.com/inward/record.url?eid=2-s2.0-85161648577&partnerID=MN8TOARS. 10.1016/j.scitotenv.2023.164492 Amaro, H.M.; Sousa, J.F.; Salgado, E.M.; Pires, J.C.M.; Nunes, O.C.. "Microalgal Systems, a Green Solution for Wastewater Conventional Pollutants Removal, Disinfection, and Reduction of Antibiotic Resistance Genes Prevalence?". Applied Sciences (Switzerland) 13 7 (2023): http://www.scopus.com/inward/record.url?eid=2-s2.0-85152669529&partnerID=MN8TOARS. 10.3390/app13074266 Marrero, J.A.; Ribeiro, R.S.; Ribeirinho-Soares, S.; Pedrosa, M.; Silva, A.M.T.; Nunes, O.C.. "Water disinfection by persulfate activation using a nitrogen-doped reduced graphene oxide – PVDF membrane". Journal of Environmental Chemical Engineering 11 3 (2023): http://www.scopus.com/inward/record.url?eid=2-s2.0-85151537969&partnerID=MN8TOARS. 10.1016/j.jece.2023.109839 Calaixo, M.R.C.; Ribeirinho-Soares, S.; Madeira, L.M.; Nunes, O.C.; Rodrigues, C.S.D.. "Catalyst-free persulfate activation by UV/visible radiation for secondary urban wastewater disinfection". Journal of Environmental Management 348 (2023): http://www.scopus.com/inward/record.url?eid=2-s2.0-85175579359&partnerID=MN8TOARS. 10.1016/j.jenvman.2023.119486 Venâncio, J.P.F.; Rodrigues, C.S.D.; Nunes, O.C.; Madeira, L.M.. "Application of iron-activated persulfate for municipal wastewater disinfection". Journal of Hazardous Materials 426 (2022): http://www.scopus.com/inward/record.url?eid=2-s2.0-85121251646&partnerID=MN8TOARS. 10.1016/j.jhazmat.2021.127989 Ribeirinho-Soares, S.; Moreira, N.F.F.; Graça, C.; Pereira, M.F.R.; Silva, A.M.T.; Nunes, O.C.. "Overgrowth control of potentially hazardous bacteria during storage of ozone treated wastewater through natural competition". Water Research 209 (2022): http://www.scopus.com/inward/record.url?eid=2-s2.0-85120858453&partnerID=MN8TOARS. 10.1016/j.watres.2021.117932 Lopes, A.R.; Bunin, E.; Viana, A.T.; Froufe, H.; Muñoz-Merida, A.; Pinho, D.; Figueiredo, J.; et al. "In silico prediction of the enzymes involved in the degradation of the herbicide molinate by Gulosibacter molinativorax ON4^T". Scientific Reports 12 1 (2022): http://www.scopus.com/inward/record.url?eid=2-s2.0-85137886980&partnerID=MN8TOARS. 10.1038/s41598-022-18732-5 Manaia, C.M.; Aga, D.S.; Cytryn, E.; Gaze, W.H.; Graham, D.W.; Guo, J.; Leonard, A.F.C.; et al. "The Complex Interplay Between Antibiotic Resistance and Pharmaceutical and Personal Care Products in the Environment". Environmental Toxicology and Chemistry (2022): http://www.scopus.com/inward/record.url?eid=2-s2.0-85147529711&partnerID=MN8TOARS. 10.1002/etc.5555 Barbosa, J.R.M.; Santos, A.S.G.G.; Viana, A.T.; Gonçalves, A.G.; Nunes, O.C.; Pereira, M.F.R.; Soares, O.S.G.P.. "Carbon-based materials for water disinfection and heavy metals removal". Environmental Technology (United Kingdom) (2022): http://www.scopus.com/inward/record.url?eid=2-s2.0-85144144709&partnerID=MN8TOARS. 10.1080/09593330.2022.2154173 Gorito, Ana M.; Pesqueira, Joana F.J.R.; Moreira, Nuno. F.F.; Ribeiro, Ana R.; Pereira, M. Fernando R.; Nunes, Olga C.; Almeida, C. Marisa R.; Silva, Adrián M.T.. "Ozone-based water treatment (O3, O3/UV, O3/H2O2) for removal of organic micropollutants, bacteria inactivation and regrowth prevention". Journal of Environmental Chemical Engineering (2021): 105315. http://dx.doi.org/10.1016/j.jece.2021.105315. 10.1016/j.jece.2021.105315 Ferreira, Catarina; Bikkarolla, Santosh K.; Frykholm, Karolin; Pohjanen, Saga; Brito, Margarida; Lameiras, Catarina; Nunes, Olga C.; Westerlund, Fredrik; Manaia, Célia M.. "Polyphasic characterization of carbapenem-resistant Klebsiella pneumoniae clinical isolates suggests vertical transmission of the blaKPC-3 gene". PLOS ONE 16 2 (2021): e0247058. http://dx.doi.org/10.1371/journal.pone.0247058. 10.1371/journal.pone.0247058 Olga C. Nunes. "The challenge of removing waste from wastewater: let technology use nature!". Microbial Biotechnology (2021): https://doi.org/10.1111/1751-7915.13711. 10.1111/1751-7915.13711 Fortunato, G.; Vaz-Moreira, I.; Nunes, O.C.; Manaia, C.M.. "Effect of copper and zinc as sulfate or nitrate salts on soil microbiome dynamics and blaVIM-positive Pseudomonas aeruginosa survival". Journal of Hazardous Materials 415 (2021): http://www.scopus.com/inward/record.url?eid=2-s2.0-85103088738&partnerID=MN8TOARS. 10.1016/j.jhazmat.2021.125631 Santos, A.S.G.G.; Ramalho, P.S.F.; Viana, A.T.; Lopes, A.R.; Gonçalves, A.G.; Nunes, O.C.; Pereira, M.F.R.; Soares, O.S.G.P.. "Feasibility of using magnetic nanoparticles in water disinfection". Journal of Environmental Management 288 (2021): http://www.scopus.com/inward/record.url?eid=2-s2.0-85103715912&partnerID=MN8TOARS. 10.1016/j.jenvman.2021.112410 Sadeghi, P.; Diaz, A.; Vila, M.C.; Fiúza, A.; Nunes, O.. "Appraisal of the Laboratory-Scale Tests for Bioleaching of Low-Grade Heavy Metal-(oid) s Resources". Water, Air, and Soil Pollution 232 7 (2021): http://www.scopus.com/inward/record.url?eid=2-s2.0-85108202984&partnerID=MN8TOARS. 10.1007/s11270-021-05226-9 Moreira, N.F.F.; Ribeirinho-Soares, S.; Viana, A.T.; Graça, C.A.L.; Ribeiro, A.R.L.; Castelhano, N.; Egas, C.; et al. "Rethinking water treatment targets: Bacteria regrowth under unprovable conditions". Water Research 201 (2021): http://www.scopus.com/inward/record.url?eid=2-s2.0-85108883803&partnerID=MN8TOARS. 10.1016/j.watres.2021.117374 Ribeirinho-Soares, Sara; Moreira, Nuno F.F.; Cátia A. L. Graça; Abreu-Silva, Joana; Célia M. Manaia; Silva, Adrián M. T.; Nunes, Olga C.. "Overgrowth control of potentially hazardous bacteria during storage of ozonated wastewater through competition: microbiome analysis". Water Reseacrh (2021): In press Olga C. Nunes; Célia M. Manaia; Boris A. Kolvenbach; Philippe F.-X. Corvini. "Living with sulfonamides: a diverse range of mechanisms observed in bacteria". Applied Microbiology and Biotechnology (2020): https://doi.org/10.1007/s00253-020-10982-5. 10.1007/s00253-020-10982-5 Graça, Cátia A. L.; Ribeirinho-Soares, Sara; Abreu-Silva, Joana; Ramos, Inês I.; Ribeiro, Ana R.; Castro-Silva, Sérgio M.; Segundo, Marcela A.; et al. "A Pilot Study Combining Ultrafiltration with Ozonation for the Treatment of Secondary Urban Wastewater: Organic Micropollutants, Microbial Load and Biological Effects". Water 12 12 (2020): 3458. http://dx.doi.org/10.3390/w12123458. 10.3390/w12123458 Ana Rita Lopes; Diana Madureira; Ana Diaz; Sílvia Santos; Maria Cristina Vila; Olga Cristina Nunes. "Characterisation of bacterial communities from an active mining site and assessment of its potential metal solubilising activity". Journal of Environmental Chemical Engineering 8 6 (2020): 104495-104495. https://doi.org/10.1016/j.jece.2020.104495. 10.1016/j.jece.2020.104495 Olga C. Nunes. "Re-thinking the main goals of biological sciences: is it possible to build new knowledge without fundamental research?". Environmental Microbiology Reports (2020): https://doi.org/10.1111/1758-2229.12874. 10.1111/1758-2229.12874 Manaia, Célia M.; Albuquerque, Luciana; Veríssimo, António; Morais, Paula V.; Nunes, Olga C.. "Farewell Milton". Environmental Microbiology 22 4 (2020): 1169-1169. http://dx.doi.org/10.1111/1462-2920.14943. 10.1111/1462-2920.14943 Ana C. Reis; Boris A. Kolvenbach; Olga C. Nunes; Philippe F.X. Corvini. "Biodegradation of antibiotics: The new resistance determinants – part II". New Biotechnology 54 (2020): 13-27. https://doi.org/10.1016/j.nbt.2019.08.003. 10.1016/j.nbt.2019.08.003 Ana C. Reis; Boris A. Kolvenbach; Olga C. Nunes; Philippe F.X. Corvini. "Biodegradation of antibiotics: The new resistance determinants – part I". New Biotechnology 54 (2020): 34-51. https://doi.org/10.1016/j.nbt.2019.08.002. 10.1016/j.nbt.2019.08.002 Marano, R.B.M.; Fernandes, T.; Manaia, C.M.; Nunes, O.; Morrison, D.; Berendonk, T.U.; Kreuzinger, N.; et al. "A global multinational survey of cefotaxime-resistant coliforms in urban wastewater treatment plants". Environmental International 144 (2020): http://www.scopus.com/inward/record.url?eid=2-s2.0-85089582870&partnerID=MN8TOARS. 10.1016/j.envint.2020.106035 McGenity, T.J.; Gessesse, A.; Hallsworth, J.E.; Garcia Cela, E.; Verheecke-Vaessen, C.; Wang, F.; Chavarría, M.; et al. "Visualizing the invisible: class excursions to ignite children’s enthusiasm for microbes". Microbial Biotechnology 13 4 (2020): 844-887. http://www.scopus.com/inward/record.url?eid=2-s2.0-85084464082&partnerID=MN8TOARS. 10.1111/1751-7915.13576 Pinto, M.; Ramalho, P.S.F.; Moreira, N.F.F.; Gonçalves, A.G.; Nunes, O.C.; Pereira, M.F.R.; Soares, O.S.G.P.. "Application of magnetic nanoparticles for water purification". Environmental Advances 2 (2020): http://www.scopus.com/inward/record.url?eid=2-s2.0-85103716148&partnerID=MN8TOARS. 10.1016/j.envadv.2020.100010 Ana C. Reis; Boris A. Kolvenbach; Mohamed Chami; Luís Gales; Conceição Egas; Philippe F.-X. Corvini; Olga C. Nunes. "Comparative genomics reveals a novel genetic organization of the sad cluster in the sulfonamide-degrader ‘Candidatus Leucobacter sulfamidivorax’ strain GP". BMC Genomics (2019): https://doi.org/10.1186/s12864-019-6206-z. 10.1186/s12864-019-6206-z Bárbara W.N. Grehs; Ana Rita Lopes; Nuno F.F. Moreira; Telma Fernandes; Maria A.O. Linton; Adrián M.T. Silva; Célia M. Manaia; Elvis Carissimi; Olga C. Nunes. "Removal of microorganisms and antibiotic resistance genes from treated urban wastewater: A comparison between aluminium sulphate and tannin coagulants". Water Research 166 (2019): 115056-115056. https://doi.org/10.1016/j.watres.2019.115056. 10.1016/j.watres.2019.115056 Pedrosa, Marta; Sampaio, Maria J.; Horvat, Tajana; Nunes, Olga C.; Dražic, Goran; Rodrigues, Alírio E.; Figueiredo, José L.; et al. "Visible-light-induced self-cleaning functional fabrics using graphene oxide/carbon nitride materials". Applied Surface Science 497 (2019): 143757. http://dx.doi.org/10.1016/j.apsusc.2019.143757. 10.1016/j.apsusc.2019.143757 I.C. Iakovides; I. Michael-Kordatou; N.F.F. Moreira; A.R. Ribeiro; T. Fernandes; M.F.R. Pereira; O.C. Nunes; et al. "Continuous ozonation of urban wastewater: Removal of antibiotics, antibiotic-resistant Escherichia coli and antibiotic resistance genes and phytotoxicity". Water Research 159 (2019): 333-347. https://doi.org/10.1016/j.watres.2019.05.025. 10.1016/j.watres.2019.05.025 Biancullo, Francesco; Moreira, Nuno F.F.; Ribeiro, Ana R.; Manaia, Célia M.; Faria, Joaquim L.; Nunes, Olga C.; Castro-Silva, Sérgio M.; Silva, Adrián M.T.. "Heterogeneous photocatalysis using UVA-LEDs for the removal of antibiotics and antibiotic resistant bacteria from urban wastewater treatment plant effluents". Chemical Engineering Journal 367 (2019): 304-313. http://dx.doi.org/10.1016/j.cej.2019.02.012. 10.1016/j.cej.2019.02.012 Catarina Ferreira; Diana Bogas; Santosh K. Bikarolla; Ana Rita Varela; Karolin Frykholm; Raquel Linheiro; Olga C. Nunes; Fredrik Westerlund; Célia M. Manaia. "Genetic variation in the conjugative plasmidome of a hospital effluent multidrug resistant Escherichia coli strain". Chemosphere 220 (2019): 748-759. https://doi.org/10.1016/j.chemosphere.2018.12.130. 10.1016/j.chemosphere.2018.12.130 Nguyen, P.Y.; Silva, A.F.; Reis, A.C.; Nunes, O.C.; Rodrigues, A.M.; Rodrigues, J.E.; Cardoso, V.V.; et al. "Bioaugmentation of membrane bioreactor with Achromobacter denitrificans strain PR1 for enhanced sulfamethoxazole removal in wastewater". Science of the Total Environment 648 (2019): 44-55. http://www.scopus.com/inward/record.url?eid=2-s2.0-85051257437&partnerID=MN8TOARS. 10.1016/j.scitotenv.2018.08.100 Gianuario Fortunato; Ivone Vaz-Moreira; Cristina Becerra-Castro; Olga C. Nunes; Célia M. Manaia. "A rationale for the high limits of quantification of antibiotic resistance genes in soil". Environmental Pollution 243 (2018): 1696-1703. https://doi.org/10.1016/j.envpol.2018.09.128. 10.1016/j.envpol.2018.09.128 Reis, Ana C.; Cvancarová, Monika; Liu, Ying; Lenz, Markus; Hettich, Timm; Kolvenbach, Boris A.; Corvini, Philippe F.-X.; Nunes, Olga C.. "Biodegradation of sulfamethoxazole by a bacterial consortium of Achromobacter denitrificans PR1 and Leucobacter sp. GP". Applied Microbiology and Biotechnology 102 23 (2018): 10299-10314. http://dx.doi.org/10.1007/s00253-018-9411-9. 10.1007/s00253-018-9411-9 Patrícia J.M. Reis; Vera Homem; Arminda Alves; Vítor J.P. Vilar; Célia M. Manaia; Olga C. Nunes. "Insights on sulfamethoxazole bio-transformation by environmental Proteobacteria isolates". Journal of Hazardous Materials 358 (2018): 310-318. https://doi.org/10.1016/j.jhazmat.2018.07.012. 10.1016/j.jhazmat.2018.07.012 Manaia, C.M.; Rocha, J.; Scaccia, N.; Marano, R.; Radu, E.; Biancullo, F.; Cerqueira, F.; et al. "Antibiotic resistance in wastewater treatment plants: Tackling the black box". Environment International 115 (2018): 312-324. http://www.scopus.com/inward/record.url?eid=2-s2.0-85044969936&partnerID=MN8TOARS. 10.1016/j.envint.2018.03.044 Magalhães, P.; Ângelo, J.; Nunes, O.C.; Mendes, A.. "Enhanced methylene blue photodegradation with propylene carbonate as a solvent". Applied Surface Science 458 (2018): 597-602. http://www.scopus.com/inward/record.url?eid=2-s2.0-85050190668&partnerID=MN8TOARS. 10.1016/j.apsusc.2018.07.084 Moreira, N.F.F.; Narciso-da-Rocha, C.; Polo-López, M.I.; Pastrana-Martínez, L.M.; Faria, J.L.; Manaia, C.M.; Fernández-Ibáñez, P.; Nunes, O.C.; Silva, A.M.T.. "Solar treatment (H2O2, TiO2-P25 and GO-TiO2 photocatalysis, photo-Fenton) of organic micropollutants, human pathogen indicators, antibiotic resistant bacteria and related genes in urban wastewater". Water Research 135 (2018): 195-206. http://www.scopus.com/inward/record.url?eid=2-s2.0-85042297132&partnerID=MN8TOARS. 10.1016/j.watres.2018.01.064 Silva, T.L.S.; Morales-Torres, S.; Esteves, C.M.P.; Ribeiro, A.R.; Nunes, O.C.; Figueiredo, J.L.; Silva, A.M.T.. "Desalination and removal of organic micropollutants and microorganisms by membrane distillation". Desalination 437 (2018): 121-132. http://www.scopus.com/inward/record.url?eid=2-s2.0-85043980703&partnerID=MN8TOARS. 10.1016/j.desal.2018.02.027 Estevinho, Berta N.; Lopes, A. Rita; Sousa, Vera; Rocha, Fernando; Nunes, Olga C.. "Microencapsulation of Gulosibacter molinativorax ON4 T cells by a spray-drying process using different biopolymers". Journal of Hazardous Materials 338 (2017): 85-92. http://dx.doi.org/10.1016/j.jhazmat.2017.05.018. 10.1016/j.jhazmat.2017.05.018 Sousa, José M.; Macedo, Gonçalo; Pedrosa, Marta; Becerra-Castro, Cristina; Castro-Silva, Sérgio; Pereira, M. Fernando R.; Silva, Adrián M.T.; Nunes, Olga C.; Manaia, Célia M.. "Ozonation and UV254nm radiation for the removal of microorganisms and antibiotic resistance genes from urban wastewater". Journal of Hazardous Materials 323 (2017): 434-441. http://dx.doi.org/10.1016/j.jhazmat.2016.03.096. 10.1016/j.jhazmat.2016.03.096 Magalhães, P.; Andrade, L.; Nunes, O.C.; Mendes, A.. "Titanium dioxide photocatalysis: Fundamentals and application on photoinactivation". Reviews on Advanced Materials Science 51 2 (2017): 91-129. http://www.scopus.com/inward/record.url?eid=2-s2.0-85036479399&partnerID=MN8TOARS. Silva, T.F.C.V.; Vieira, E.; Lopes, A.R.; Nunes, O.C.; Fonseca, A.; Saraiva, I.; Boaventura, R.A.R.; Vilar, V.J.P.. "How the performance of a biological pre-oxidation step can affect a downstream photo-Fenton process on the remediation of mature landfill leachates: Assessment of kinetic parameters and characterization of the bacterial communities". Separation and Purification Technology 175 (2017): 274-286. http://www.scopus.com/inward/record.url?eid=2-s2.0-84998849945&partnerID=MN8TOARS. 10.1016/j.seppur.2016.11.011 Bogas, D.; Nyberg, L.; Pacheco, R.; Azevedo, N.F.; Beech, J.P.; Gomila, M.; Lalucat, J.; et al. "Applications of optical DNA mapping in microbiology". BioTechniques 62 6 (2017): 255-267. http://www.scopus.com/inward/record.url?eid=2-s2.0-85020897312&partnerID=MN8TOARS. 10.2144/000114555 Reis, A.C.; Kroll, K.; Gomila, M.; Kolvenbach, B.A.; Corvini, P.F.X.; Nunes, O.C.. "Complete genome sequence of Achromobacter denitrificans PR1". Genome Announcements 5 31 (2017): http://www.scopus.com/inward/record.url?eid=2-s2.0-85026662654&partnerID=MN8TOARS. 10.1128/genomeA.00762-17 Vaz-Moreira, I.; Narciso-da-rocha, C.; Lopes, A.R.; Carvalho, G.; Lobo-da-Cunha, A.; Whitman, W.B.; Snauwaert, C.; et al. "Oryzisolibacter propanilivorax gen. Nov., sp. nov., a propanildegrading bacterium". International Journal of Systematic and Evolutionary Microbiology 67 10 (2017): 3752-3758. http://www.scopus.com/inward/record.url?eid=2-s2.0-85031781579&partnerID=MN8TOARS. 10.1099/ijsem.0.002184 Vaz-Moreira, I.; Nunes, O.C.; Manaia, C.M.. "Ubiquitous and persistent Proteobacteria and other Gram-negative bacteria in drinking water". Science of the Total Environment 586 (2017): 1141-1149. http://www.scopus.com/inward/record.url?eid=2-s2.0-85013128185&partnerID=MN8TOARS. 10.1016/j.scitotenv.2017.02.104 Becerra-Castro, C.; Lopes, A.R.; Teixeira, S.; Silva, M.E.F.; Pimenta, E.; Manaia, C.M.; Nunes, O.C.. "Characterization of bacterial communities from Masseiras, a unique Portuguese greenhouse agricultural system". Antonie van Leeuwenhoek, International Journal of General and Molecular Microbiology (2017): 1-12. http://www.scopus.com/inward/record.url?eid=2-s2.0-85011306594&partnerID=MN8TOARS. 10.1007/s10482-017-0833-7 Nguyen, P.Y.; Carvalho, G.; Reis, A.C.; Nunes, O.C.; Reis, M.A.M.; Oehmen, A.. "Impact of biogenic substrates on sulfamethoxazole biodegradation kinetics by Achromobacter denitrificans strain PR1". Biodegradation (2017): 1-13. http://www.scopus.com/inward/record.url?eid=2-s2.0-85014926480&partnerID=MN8TOARS. 10.1007/s10532-017-9789-6 Barros, J.; Grenho, L.; Fontenente, S.; Manuel, C.M.; Nunes, O.C.; Melo, L.F.; Monteiro, F.J.; Ferraz, M.P.. "Staphylococcus aureus and Escherichia coli dual-species biofilms on nanohydroxyapatite loaded with CHX or ZnO nanoparticles". Journal of Biomedical Materials Research - Part A 105 2 (2017): 491-497. http://www.scopus.com/inward/record.url?eid=2-s2.0-84996553212&partnerID=MN8TOARS. 10.1002/jbm.a.35925 Ana R. Lopes; Vera M. Sousa; Berta N. Estevinho; José P. Leite; Nuno F.F. Moreira; Luís Gales; Fernando Rocha; Olga C. Nunes. "Production of microparticles of molinate degrading biocatalysts using the spray drying technique". Chemosphere 161 (2016): 61-68. https://doi.org/10.1016/j.chemosphere.2016.07.006. 10.1016/j.chemosphere.2016.07.006 Maria Elisabete F. Silva; Ana R. Lopes; Ana Cristina Cunha-Queda; Olga C. Nunes. "Comparison of the bacterial composition of two commercial composts with different physicochemical, stability and maturity properties". Waste Management 50 (2016): 20-30. https://doi.org/10.1016%2Fj.wasman.2016.02.023. 10.1016/j.wasman.2016.02.023 Pinho, S.C.; Almeida, M.F.; Nunes, O.C.. "Erratum to: Effects of alkaline hydrolysis and autoclaving on inorganic components present in healthcare waste (International Journal of Environmental Science and Technology, 12, (2015), 1191-1200, 10.1007/s13762-014-0503-5)". International Journal of Environmental Science and Technology 13 2 (2016): http://www.scopus.com/inward/record.url?eid=2-s2.0-84954424771&partnerID=MN8TOARS. 10.1007/s13762-015-0916-9 Pinho, S.C.; Nunes, O.C.; Almeida, M.F.; Rodrigues, C.S.D.. "Characteristics of effluents from healthcare waste treatment with alkaline hydrolysis". Water and Environment Journal 30 3-4 (2016): 211-217. http://www.scopus.com/inward/record.url?eid=2-s2.0-84992618492&partnerID=MN8TOARS. 10.1111/wej.12180 Graham, E.B.; Knelman, J.E.; Schindlbacher, A.; Siciliano, S.; Breulmann, M.; Yannarell, A.; Beman, J.M.; et al. "Microbes as engines of ecosystem function: When does community structure enhance predictions of ecosystem processes?". Frontiers in Microbiology 7 FEB (2016): http://www.scopus.com/inward/record.url?eid=2-s2.0-84962052889&partnerID=MN8TOARS. 10.3389/fmicb.2016.00214 Becerra-Castro, C.; Macedo, G.; Silva, A.M.T.; Manaia, C.M.; Nunes, O.C.. "Proteobacteria become predominant during regrowth after water disinfection". Science of the Total Environment 573 (2016): 313-323. http://www.scopus.com/inward/record.url?eid=2-s2.0-84983651729&partnerID=MN8TOARS. 10.1016/j.scitotenv.2016.08.054 Moreira, N.F.F.; Sousa, J.M.; Macedo, G.; Ribeiro, A.R.; Barreiros, L.; Pedrosa, M.; Faria, J.L.; et al. "Photocatalytic ozonation of urban wastewater and surface water using immobilized TiO2with LEDs: Micropollutants, antibiotic resistance genes and estrogenic activity". Water Research 94 (2016): 10-22. http://www.scopus.com/inward/record.url?eid=2-s2.0-84958952616&partnerID=MN8TOARS. 10.1016/j.watres.2016.02.003 Manaia, C.M.; Macedo, G.; Fatta-Kassinos, D.; Nunes, O.C.. "Antibiotic resistance in urban aquatic environments: can it be controlled?". Applied Microbiology and Biotechnology 100 4 (2016): 1543-1557. http://www.scopus.com/inward/record.url?eid=2-s2.0-84958759279&partnerID=MN8TOARS. 10.1007/s00253-015-7202-0 Varela, A.R.; Nunes, O.C.; Manaia, C.M.. "Quinolone resistant Aeromonas spp. as carriers and potential tracers of acquired antibiotic resistance in hospital and municipal wastewater". Science of the Total Environment 542 (2016): 665-671. http://www.scopus.com/inward/record.url?eid=2-s2.0-84946780842&partnerID=MN8TOARS. 10.1016/j.scitotenv.2015.10.124 Barros, J.; Grenho, L.; Fernandes, M.H.; Manuel, C.M.; Melo, L.F.; Nunes, O.C.; Monteiro, F.J.; Ferraz, M.P.. "Anti-sessile bacterial and cytocompatibility properties of CHX-loaded nanohydroxyapatite". Colloids and Surfaces B: Biointerfaces 130 (2015): 305-314. http://www.scopus.com/inward/record.url?eid=2-s2.0-84930179775&partnerID=MN8TOARS. 10.1016/j.colsurfb.2015.04.034 Pinho, S.C.; Nunes, O.C.; Lobo-da-Cunha, A.; Almeida, M.F.. "Inactivation of Geobacillus stearothermophilus spores by alkaline hydrolysis applied to medical waste treatment". Journal of Environmental Management 161 (2015): 51-56. http://www.scopus.com/inward/record.url?eid=2-s2.0-84934268825&partnerID=MN8TOARS. 10.1016/j.jenvman.2015.06.045 Lopes, A.R.; Bello, D.; Prieto-Fernández, Á.; Trasar-Cepeda, C.; Manaia, C.M.; Nunes, O.C.. "Relationships among bulk soil physicochemical, biochemical, and microbiological parameters in an organic alfalfa-rice rotation system". Environmental Science and Pollution Research (2015): http://www.scopus.com/inward/record.url?eid=2-s2.0-84927534361&partnerID=MN8TOARS. 10.1007/s11356-015-4410-1 Leite, J.P.; Duarte, M.; Paiva, A.M.; Ferreira-Da-Silva, F.; Matias, P.M.; Nunes, O.C.; Gales, L.. "Structure-guided engineering of molinate hydrolase for the degradation of thiocarbamate pesticides". PLoS ONE 10 4 (2015): http://www.scopus.com/inward/record.url?eid=2-s2.0-84929379140&partnerID=MN8TOARS. 10.1371/journal.pone.0123430 Ribeiro, A.R.; Nunes, O.C.; Pereira, M.F.R.; Silva, A.M.T.. "An overview on the advanced oxidation processes applied for the treatment of water pollutants defined in the recently launched Directive 2013/39/EU". Environment International 75 (2015): 33-51. http://www.scopus.com/inward/record.url?eid=2-s2.0-84910000514&partnerID=MN8TOARS. 10.1016/j.envint.2014.10.027 Magalhães, P.; Ângelo, J.; Sousa, V.M.; Nunes, O.C.; Andrade, L.; Mendes, A.. "Synthesis and assessment of a graphene-based composite photocatalyst". Biochemical Engineering Journal (2015): http://www.scopus.com/inward/record.url?eid=2-s2.0-84934777438&partnerID=MN8TOARS. 10.1016/j.bej.2015.05.016 Li, L.; Praet, J.; Borremans, W.; Nunes, O.C.; Manaia, C.M.; Cleenwerck, I.; Meeus, I.; et al. "Bombella intestini gen. nov., sp. nov., an acetic acid bacterium isolated from bumble bee crop". International Journal of Systematic and Evolutionary Microbiology 65 1 (2015): 267-273. http://www.scopus.com/inward/record.url?eid=2-s2.0-84921512280&partnerID=MN8TOARS. 10.1099/ijs.0.068049-0 Becerra-Castro, C.; Lopes, A.R.; Vaz-Moreira, I.; Silva, E.F.; Manaia, C.M.; Nunes, O.C.. "Wastewater reuse in irrigation: A microbiological perspective on implications in soil fertility and human and environmental health". Environment International 75 (2015): 117-135. http://www.scopus.com/inward/record.url?eid=2-s2.0-84911423581&partnerID=MN8TOARS. 10.1016/j.envint.2014.11.001 Pinho, S.C.; Almeida, M.F.; Nunes, O.C.. "Effects of alkaline hydrolysis and autoclaving on inorganic components present in healthcare waste". International Journal of Environmental Science and Technology 12 4 (2015): 1191-1200. http://www.scopus.com/inward/record.url?eid=2-s2.0-84923677707&partnerID=MN8TOARS. 10.1007/s13762-014-0503-5 Paiva, A.M.; Estevinho, B.N.; Rocha, F.; Nunes, O.C.. "Development and validation of uv spectrophotometric method for determining the herbicide molinate with and without alginate microparticles". Environmental Engineering and Management Journal 14 2 (2015): 303-309. http://www.scopus.com/inward/record.url?eid=2-s2.0-84936772495&partnerID=MN8TOARS. Vaz-Moreira, I.; Narciso-Da-Rocha, C.; De Brandt, E.; Vandamme, P.; Silva Ferreira, A.C.; Lobo-Da-Cunha, A.; Nunes, O.C.; Manaia, C.M.. "Hydromonas duriensis gen. Nov., sp. nov., Isolated from freshwater". International Journal of Systematic and Evolutionary Microbiology 65 11 (2015): 4134-4139. http://www.scopus.com/inward/record.url?eid=2-s2.0-84955561245&partnerID=MN8TOARS. 10.1099/ijsem.0.000546 Costa, L.F.R.; da Silva, E.S.; Noronha, V.T.; Vaz-Moreira, I.; Nunes, O.C.; Andrade, M.M.D.. "Development of an automatic identification algorithm for antibiogram analysis". Computers in Biology and Medicine 67 (2015): 104-115. http://www.scopus.com/inward/record.url?eid=2-s2.0-84945129421&partnerID=MN8TOARS. 10.1016/j.compbiomed.2015.09.020 Vandamme, P.A.; Peeters, C.; Cnockaert, M.; Inganäs, E.; Falsen, E.; Moore, E.R.B.; Nunes, O.C.; et al. "Bordetella bronchialis sp. nov., bordetella flabilis sp. nov. and bordetella sputigena sp. nov., isolated from human respiratory specimens, and reclassification of Achromobacter sediminum Zhang et al. 2014 as verticia sediminum gen. nov., comb. nov". International Journal of Systematic and Evolutionary Microbiology 65 10 (2015): 3674-3682. http://www.scopus.com/inward/record.url?eid=2-s2.0-84982728088&partnerID=MN8TOARS. 10.1099/ijsem.0.000473 Varela, A.R.; Macedo, G.N.; Nunes, O.C.; Manaia, C.M.. "Genetic characterization of fluoroquinolone resistant Escherichia coli from urban streams and municipal and hospital effluents". FEMS Microbiology Ecology 91 5 (2015): http://www.scopus.com/inward/record.url?eid=2-s2.0-84938978684&partnerID=MN8TOARS. 10.1093/femsec/fiv015 Moreira, N.F.F.; Orge, C.A.; Ribeiro, A.R.; Faria, J.L.; Nunes, O.C.; Pereira, M.F.R.; Silva, A.M.T.. "Fast mineralization and detoxification of amoxicillin and diclofenac by photocatalytic ozonation and application to an urban wastewater". Water Research 87 (2015): 87-96. http://www.scopus.com/inward/record.url?eid=2-s2.0-84941961878&partnerID=MN8TOARS. 10.1016/j.watres.2015.08.059 Vaz-Moreira, I.; Nunes, O.C.; Manaia, C.M.. "Bacterial diversity and antibiotic resistance in water habitats: Searching the links with the human microbiome". FEMS Microbiology Reviews 38 4 (2014): 761-778. http://www.scopus.com/inward/record.url?eid=2-s2.0-84903955388&partnerID=MN8TOARS. 10.1111/1574-6976.12062 Lopes, A.R.; Manaia, C.M.; Nunes, O.C.. "Bacterial community variations in an alfalfa-rice rotation system revealed by 16S rRNA gene 454-pyrosequencing". FEMS Microbiology Ecology 87 3 (2014): 650-663. http://www.scopus.com/inward/record.url?eid=2-s2.0-84896702761&partnerID=MN8TOARS. 10.1111/1574-6941.12253 Barros, J.; Grenho, L.; Manuel, C.M.; Ferreira, C.; Melo, L.; Nunes, O.C.; Monteiro, F.J.; Ferraz, M.P.. "Influence of nanohydroxyapatite surface properties on Staphylococcus epidermidis biofilm formation". Journal of Biomaterials Applications 28 9 (2014): 1325-1335. http://www.scopus.com/inward/record.url?eid=2-s2.0-84890640286&partnerID=MN8TOARS. 10.1177/0885328213507300 Narciso-Da-Rocha, C.; Varela, A.R.; Schwartz, T.; Nunes, O.C.; Manaia, C.M.. "BlaTEMand vanA as indicator genes of antibiotic resistance contamination in a hospital-urban wastewater treatment plant system". Journal of Global Antimicrobial Resistance 2 4 (2014): 309-315. http://www.scopus.com/inward/record.url?eid=2-s2.0-84916197907&partnerID=MN8TOARS. 10.1016/j.jgar.2014.10.001 Li, L.; Wieme, A.; Spitaels, F.; Balzarini, T.; Nunes, O.C.; Manaia, C.M.; Van Landschoot, A.; et al. "Acetobacter sicerae sp. nov., isolated from cider and kefir, and identification of species of the genus Acetobacter by dnaK, groEL and rpoB sequence analysis". International Journal of Systematic and Evolutionary Microbiology 64 PART 7 (2014): 2407-2415. http://www.scopus.com/inward/record.url?eid=2-s2.0-84904504424&partnerID=MN8TOARS. 10.1099/ijs.0.058354-0 Pereira, J.H.O.S.; Queirós, D.B.; Reis, A.C.; Nunes, O.C.; Borges, M.T.; Boaventura, R.A.R.; Vilar, V.J.P.. "Process enhancement at near neutral pH of a homogeneous photo-Fenton reaction using ferricarboxylate complexes: Application to oxytetracycline degradation". Chemical Engineering Journal 253 (2014): 217-228. http://www.scopus.com/inward/record.url?eid=2-s2.0-84901950376&partnerID=MN8TOARS. 10.1016/j.cej.2014.05.037 Pereira, J.H.O.S.; Reis, A.C.; Homem, V.; Silva, J.A.; Alves, A.; Borges, M.T.; Boaventura, R.A.R.; Vilar, V.J.P.; Nunes, O.C.. "Solar photocatalytic oxidation of recalcitrant natural metabolic by-products of amoxicillin biodegradation". Water Research 65 (2014): 307-320. http://www.scopus.com/inward/record.url?eid=2-s2.0-84906282745&partnerID=MN8TOARS. 10.1016/j.watres.2014.07.037 Varela, A.R.; André, S.; Nunes, O.C.; Manaia, C.M.. "Insights into the relationship between antimicrobial residues and bacterial populations ina hospital-urban wastewater treatment plant system". Water Research 54 (2014): 327-336. http://www.scopus.com/inward/record.url?eid=2-s2.0-84894479994&partnerID=MN8TOARS. 10.1016/j.watres.2014.02.003 Reis, P.J.M.; Reis, A.C.; Ricken, B.; Kolvenbach, B.A.; Manaia, C.M.; Corvini, P.F.X.; Nunes, O.C.. "Biodegradation of sulfamethoxazole and other sulfonamides by Achromobacter denitrificans PR1". Journal of Hazardous Materials 280 (2014): 741-749. http://www.scopus.com/inward/record.url?eid=2-s2.0-84907984539&partnerID=MN8TOARS. 10.1016/j.jhazmat.2014.08.039 Silva, M.E.F.; de Lemos, L.T.; Nunes, O.C.; Cunha-Queda, A.C.. "Influence of the composition of the initial mixtures on the chemical composition, physicochemical properties and humic-like substances content of composts". Waste Management 34 1 (2014): 21-27. http://www.scopus.com/inward/record.url?eid=2-s2.0-84896729906&partnerID=MN8TOARS. 10.1016/j.wasman.2013.09.011 Pereira, J.H.O.S.; Reis, A.C.; Nunes, O.C.; Borges, M.T.; Vilar, V.J.P.; Boaventura, R.A.R.. "Assessment of solar driven TiO2-assisted photocatalysis efficiency on amoxicillin degradation". Environmental Science and Pollution Research 21 2 (2014): 1292-1303. http://www.scopus.com/inward/record.url?eid=2-s2.0-84891633784&partnerID=MN8TOARS. 10.1007/s11356-013-2014-1 Barros, J.; Grenho, L.; Manuel, C.M.; Ferreira, C.; Melo, L.F.; Nunes, O.C.; Monteiro, F.J.; Ferraz, M.P.. "A modular reactor to simulate biofilm development in orthopedic materials". International Microbiology 16 3 (2013): 191-198. http://www.scopus.com/inward/record.url?eid=2-s2.0-84890779549&partnerID=MN8TOARS. 10.2436/20.1501.01.193 Silva, M.E.F.; Lemos, L.T.; Bastos, M.M.S.M.; Nunes, O.C.; Cunha-Queda, A.C.. "Recovery of humic-like susbtances from low quality composts". Bioresource Technology 128 (2013): 624-632. http://www.scopus.com/inward/record.url?eid=2-s2.0-84870560672&partnerID=MN8TOARS. 10.1016/j.biortech.2012.11.013 Sousa, V.M.; Manaia, C.M.; Mendes, A.; Nunes, O.C.. "Photoinactivation of various antibiotic resistant strains of Escherichia coli using a paint coat". Journal of Photochemistry and Photobiology A: Chemistry 251 (2013): 148-153. http://www.scopus.com/inward/record.url?eid=2-s2.0-84870165817&partnerID=MN8TOARS. 10.1016/j.jphotochem.2012.10.027 Novo, A.; André, S.; Viana, P.; Nunes, O.C.; Manaia, C.M.. "Antibiotic resistance, Antimicrobial residues and bacterial community composition in urban wastewater". Water Research 47 5 (2013): 1875-1887. http://www.scopus.com/inward/record.url?eid=2-s2.0-84873523628&partnerID=MN8TOARS. 10.1016/j.watres.2013.01.010 Pereira, J.H.O.S.; Reis, A.C.; Queirós, D.; Nunes, O.C.; Borges, M.T.; Vilar, V.P.; Boaventura, R.A.R.. "Insights into solar TiO2-assisted photocatalytic oxidation of two antibiotics employed in aquatic animal production, oxolinic acid and oxytetracycline". Science of the Total Environment 463-464 (2013): 274-283. http://www.scopus.com/inward/record.url?eid=2-s2.0-84880033223&partnerID=MN8TOARS. 10.1016/j.scitotenv.2013.05.098 Vaz-Moreira, I.; Egas, C.; Nunes, O.C.; Manaia, C.M.. "Bacterial diversity from the source to the tap: A comparative study based on 16S rRNA gene-DGGE and culture-dependent methods". FEMS Microbiology Ecology 83 2 (2013): 361-374. http://www.scopus.com/inward/record.url?eid=2-s2.0-84871995279&partnerID=MN8TOARS. 10.1111/1574-6941.12002 Lopes, A.R.; Danko, A.S.; Manaia, C.M.; Nunes, O.C.. "Molinate biodegradation in soils: Natural attenuation versus bioaugmentation". Applied Microbiology and Biotechnology 97 6 (2013): 2691-2700. http://www.scopus.com/inward/record.url?eid=2-s2.0-84878840392&partnerID=MN8TOARS. 10.1007/s00253-012-4096-y Nunes, O.C.; Lopes, A.R.; Manaia, C.M.. "Microbial degradation of the herbicide molinate by defined cultures and in the environment". Applied Microbiology and Biotechnology 97 24 (2013): 10275-10291. http://www.scopus.com/inward/record.url?eid=2-s2.0-84892368135&partnerID=MN8TOARS. 10.1007/s00253-013-5316-9 Almeida, B.; Vaz-Moreira, I.; Schumann, P.; Nunes, O.C.; Carvalho, G.; Crespo, M.T.B.. "Patulibacter medicamentivorans sp. nov., isolated from activated sludge of a wastewater treatment plant". International Journal of Systematic and Evolutionary Microbiology 63 PART7 (2013): 2588-2593. http://www.scopus.com/inward/record.url?eid=2-s2.0-84879816650&partnerID=MN8TOARS. 10.1099/ijs.0.047522-0 Oliveira, T.I.S.; Oliveira, M.; Viswanathan, S.; Barroso, M.F.; Barreiros, L.; Nunes, O.C.; Rodrigues, J.A.; et al. "Molinate quantification in environmental water by a glutathione-S- transferase based biosensor". Talanta 106 (2013): 249-254. http://www.scopus.com/inward/record.url?eid=2-s2.0-84886430827&partnerID=MN8TOARS. 10.1016/j.talanta.2012.10.074 Vaz-Moreira, I.; Nunes, O.C.; Manaia, C.M.. "Diversity and antibiotic resistance in Pseudomonas spp. from drinking water". Science of the Total Environment 426 (2012): 366-374. http://www.scopus.com/inward/record.url?eid=2-s2.0-84860690523&partnerID=MN8TOARS. 10.1016/j.scitotenv.2012.03.046 Coelho, J.; Nandyala, S.H.; Gomes, P.S.; Sampaio, P.; Pacheco, A.P.; Nunes, O.C.; Lopes, M.A.; Fernandes, M.H.; Santos, J.D.. "Development and characterization of Ag2O-doped ZnLB glasses and biological assessment of Ag2O - ZnLB-hydroxyapatite composites". Journal of the American Ceramic Society 95 9 (2012): 2732-2740. http://www.scopus.com/inward/record.url?eid=2-s2.0-84865733679&partnerID=MN8TOARS. 10.1111/j.1551-2916.2012.05187.x Barreiros, L.; Peres, J.; Azevedo, N.F.; Manaia, C.M.; Nunes, O.C.. "Environmental factors influencing molinate biodegradation by a two-member mixed culture in rice paddy field floodwater". International Biodeterioration and Biodegradation 72 (2012): 52-58. http://www.scopus.com/inward/record.url?eid=2-s2.0-84861973594&partnerID=MN8TOARS. 10.1016/j.ibiod.2012.05.003 Vaz-Moreira, I.; Figueira, V.; Lopes, A.R.; de Brandt, E.; Vandamme, P.; Nunes, O.C.; Manaia, C.M.. "Candidimonas nitroreducens gen. nov., sp. nov. and candidimonas humi sp. nov., isolated from sewage sludge compost". International Journal of Systematic and Evolutionary Microbiology 61 9 (2011): 2238-2246. http://www.scopus.com/inward/record.url?eid=2-s2.0-80054727004&partnerID=MN8TOARS. 10.1099/ijs.0.021188-0 Barreiros, L.; Manaia, C.M.; Nunes, O.C.. "Bacterial diversity and bioaugmentation in floodwater of a paddy field in the presence of the herbicide molinate". Biodegradation 22 2 (2011): 445-461. http://www.scopus.com/inward/record.url?eid=2-s2.0-79952184915&partnerID=MN8TOARS. 10.1007/s10532-010-9417-1 Vaz-Moreira, I.; Egas, C.; Nunes, O.C.; Manaia, C.M.. "Culture-dependent and culture-independent diversity surveys target different bacteria: A case study in a freshwater sample". Antonie van Leeuwenhoek, International Journal of General and Molecular Microbiology 100 2 (2011): 245-257. http://www.scopus.com/inward/record.url?eid=2-s2.0-79960718630&partnerID=MN8TOARS. 10.1007/s10482-011-9583-0 Lopes, A.R.; Faria, C.; Prieto-Fernández, Á.; Trasar-Cepeda, C.; Manaia, C.M.; Nunes, O.C.. "Comparative study of the microbial diversity of bulk paddy soil of two rice fields subjected to organic and conventional farming". Soil Biology and Biochemistry 43 1 (2011): 115-125. http://www.scopus.com/inward/record.url?eid=2-s2.0-78449248549&partnerID=MN8TOARS. 10.1016/j.soilbio.2010.09.021 Duarte, M.; Ferreira-da-Silva, F.; Lünsdorf, H.; Junca, H.; Gales, L.; Pieper, D.H.; Nunes, O.C.. "Gulosibacter molinativorax ON4^Tmolinate hydrolase, a novel cobalt-dependent amidohydrolase". Journal of Bacteriology 193 20 (2011): 5810-5816. http://www.scopus.com/inward/record.url?eid=2-s2.0-80053604140&partnerID=MN8TOARS. 10.1128/JB.05054-11 Vaz-Moreira, I.; Nunes, O.C.; Manaia, C.M.. "Diversity and antibiotic resistance patterns of Sphingomonadaceae isolates from drinking water". Applied and Environmental Microbiology 77 16 (2011): 5697-5706. http://www.scopus.com/inward/record.url?eid=2-s2.0-80052639949&partnerID=MN8TOARS. 10.1128/AEM.00579-11 Vaz-Moreira, I.; Figueira, V.; Lopes, A.R.; Lobo-da-Cunha, A.; Spröer, C.; Schumann, P.; Nunes, O.C.; Manaia, C.M.. "Bacillus purgationiresistans sp. nov., isolated from a drinking-water treatment plant". International Journal of Systematic and Evolutionary Microbiology 62 1 (2011): 71-77. http://www.scopus.com/inward/record.url?eid=2-s2.0-84855715940&partnerID=MN8TOARS. 10.1099/ijs.0.028605-0 Vaz-Moreira, I.; Novo, A.; Hantsis-Zacharov, E.; Lopes, A.R.; Gomila, M.; Nunes, O.C.; Manaia, C.M.; Halpern, M.. "Acinetobacter rudis sp. nov., isolated from raw milk and raw wastewater". International Journal of Systematic and Evolutionary Microbiology 61 12 (2011): 2837-2843. http://www.scopus.com/inward/record.url?eid=2-s2.0-83055185732&partnerID=MN8TOARS. 10.1099/ijs.0.027045-0027045-0 Ferreira, C.; Rosmaninho, R.; Simoes, M.; Pereira, M.C.; Bastos, M.M.; Nunes, O.C.; Coelho, M.; Melo, L.F.. "Biofouling control using microparticles carrying a biocide.". Biofouling 26 2 (2010): 205-212. http://www.scopus.com/inward/record.url?eid=2-s2.0-75549084308&partnerID=MN8TOARS. Manaia, C.M.; Novo, A.; Coelho, B.; Nunes, O.C.. "Ciprofloxacin resistance in domestic wastewater treatment plants". Water, Air, and Soil Pollution 208 1-4 (2010): 335-343. http://www.scopus.com/inward/record.url?eid=2-s2.0-77951769333&partnerID=MN8TOARS. 10.1007/s11270-009-0171-0 Carvalho, G.; Marques, R.; Lopes, A.R.; Faria, C.; Noronha, J.P.; Oehmen, A.; Nunes, O.C.; Reis, M.A.M.. "Biological treatment of propanil and 3,4-dichloroaniline: Kinetic and microbiological characterisation". Water Research 44 17 (2010): 4980-4991. http://www.scopus.com/inward/record.url?eid=2-s2.0-77957317085&partnerID=MN8TOARS. 10.1016/j.watres.2010.08.006 Vaz-Moreira, I.; Faria, C.; Lopes, A.R.; Svensson, L.A.; Moore, E.R.B.; Nunes, O.C.; Manaia, C.M.. "Shinella fusca sp. nov., isolated from domestic waste compost". International Journal of Systematic and Evolutionary Microbiology 60 1 (2010): 144-148. http://www.scopus.com/inward/record.url?eid=2-s2.0-76849096663&partnerID=MN8TOARS. 10.1099/ijs.0.009498-0 Vaz-Moreira, I.; Figueira, V.; Lopes, A.R.; Pukall, R.; Spröer, C.; Schumann, P.; Nunes, O.C.; Manaia, C.M.. "Paenibacillus residui sp. nov., isolated from urban waste compost". International Journal of Systematic and Evolutionary Microbiology 60 10 (2010): 2415-2419. http://www.scopus.com/inward/record.url?eid=2-s2.0-78049363476&partnerID=MN8TOARS. 10.1099/ijs.0.014290-0 Manuel, C.M.; Nunes, O.C.; Melo, L.F.. "Unsteady state flow and stagnation in distribution systems affect the biological stability of drinking water". Biofouling 26 2 (2010): 129-139. http://www.scopus.com/inward/record.url?eid=2-s2.0-70350774008&partnerID=MN8TOARS. 10.1080/08927010903383448 Carvalho, D.; Mendes, A.; Magalhães, F.D.; Nunes, O.C.. "Treatment of waters containing the thiocarbamate herbicide molinate through an adsorption/bio-regeneration system using a low-cost adsorbent". Water, Air, and Soil Pollution 207 1-4 (2010): 289-298. http://www.scopus.com/inward/record.url?eid=2-s2.0-77249094497&partnerID=MN8TOARS. 10.1007/s11270-009-0136-3 Silva, M.E.; Lemos, L.T.; Cunha-Queda, C.A.; Nunes, O.C.. "Co-composting of poultry manure with low quantities of carbon-rich materials". Waste Management and Research 27 2 (2009): 119-128. http://www.scopus.com/inward/record.url?eid=2-s2.0-61749087136&partnerID=MN8TOARS. 10.1177/0734242X08096693 Faria, C.; Vaz-Moreira, I.; Serapicos, E.; Nunes, O.C.; Manaia, C.M.. "Antibiotic resistance in coagulase negative staphylococci isolated from wastewater and drinking water". Science of the Total Environment 407 12 (2009): 3876-3882. http://www.scopus.com/inward/record.url?eid=2-s2.0-65049087164&partnerID=MN8TOARS. 10.1016/j.scitotenv.2009.02.034 Vaz-Moreira, I.; Faria, C.; Lopes, A.R.; Svensson, L.; Falsen, E.; Moore, E.R.B.; Silva Ferreira, A.C.; Nunes, O.C.; Manaia, C.M.. "Sphingobium vermicomposti sp. nov., isolated from vermicompost". International Journal of Systematic and Evolutionary Microbiology 59 12 (2009): 3145-3149. http://www.scopus.com/inward/record.url?eid=2-s2.0-72149129482&partnerID=MN8TOARS. 10.1099/ijs.0.006163-0 Vaz-Moreira, I.; Lopes, A.R.; Faria, C.; Spröer, C.; Schumann, P.; Nunes, O.C.; Manaia, C.M.. "Microbacterium invictum sp. nov., isolated from homemade compost". International Journal of Systematic and Evolutionary Microbiology 59 8 (2009): 2036-2041. http://www.scopus.com/inward/record.url?eid=2-s2.0-70349327833&partnerID=MN8TOARS. 10.1099/ijs.0.005561-0 Vaz-Moreira, I.; Fernanda Nobre, M.; Silva Ferreira, A.C.; Schumann, P.; Nunes, O.C.; Manaia, C.M.. "Humibacter albus gen. nov., sp. nov., isolated from sewage sludge compost". International Journal of Systematic and Evolutionary Microbiology 58 4 (2008): 1014-1018. http://www.scopus.com/inward/record.url?eid=2-s2.0-47249111299&partnerID=MN8TOARS. 10.1099/ijs.0.65266-0 Vaz-Moreira, I.; Silva, M.E.; Manaia, C.M.; Nunes, O.C.. "Diversity of bacterial isolates from commercial and homemade composts". Microbial Ecology 55 4 (2008): 714-722. http://www.scopus.com/inward/record.url?eid=2-s2.0-42649118441&partnerID=MN8TOARS. 10.1007/s00248-007-9314-2 Barreiros, L.; Fernandes, A.; Silva Ferreira, A.C.; Pereira, H.; Bastos, M.M.S.M.; Manaia, C.M.; Nunes, O.C.. "New insights into a bacterial metabolic and detoxifying association responsible for the mineralization of the thiocarbamate herbicide molinate". Microbiology 154 4 (2008): 1038-1046. http://www.scopus.com/inward/record.url?eid=2-s2.0-44349174381&partnerID=MN8TOARS. 10.1099/mic.0.2007/015297-0 Vaz-Moreira, I.; Lopes, A.R.; Falsen, E.; Schumann, P.; Nunes, O.C.; Manaia, C.M.. "Microbacterium luticocti sp. nov., isolated from sewage sludge compost". International Journal of Systematic and Evolutionary Microbiology 58 7 (2008): 1700-1704. http://www.scopus.com/inward/record.url?eid=2-s2.0-52449092488&partnerID=MN8TOARS. 10.1099/ijs.0.65494-0 Ferreira Da Silva, M.; Vaz-Moreira, I.; Gonzalez-Pajuelo, M.; Nunes, O.C.; Manaia, C.M.. "Antimicrobial resistance patterns in Enterobacteriaceae isolated from an urban wastewater treatment plant". FEMS Microbiology Ecology 60 1 (2007): 166-176. http://www.scopus.com/inward/record.url?eid=2-s2.0-33947194371&partnerID=MN8TOARS. 10.1111/j.1574-6941.2006.00268.x Vaz-Moreira, I.; Nobre, M.F.; Nunes, O.C.; Manaia, C.M.. "Gulbenkiania mobilis gen. nov., sp. nov., isolated from treated municipal wastewater". International Journal of Systematic and Evolutionary Microbiology 57 5 (2007): 1108-1112. http://www.scopus.com/inward/record.url?eid=2-s2.0-34249314064&partnerID=MN8TOARS. 10.1099/ijs.0.64726-0 Manuel, C.M.; Nunes, O.C.; Melo, L.F.. "Dynamics of drinking water biofilm in flow/non-flow conditions". Water Research 41 3 (2007): 551-562. http://www.scopus.com/inward/record.url?eid=2-s2.0-33846118695&partnerID=MN8TOARS. 10.1016/j.watres.2006.11.007 Vaz-Moreira, I.; Nobre, M.F.; Nunes, O.C.; Manaia, C.M.. "Pseudosphingobacterium domesticum gen. nov., sp. nov., isolated from home-made compost". International Journal of Systematic and Evolutionary Microbiology 57 7 (2007): 1535-1538. http://www.scopus.com/inward/record.url?eid=2-s2.0-34547489420&partnerID=MN8TOARS. 10.1099/ijs.0.64950-0 Vaz-Moreira, I.; Faria, C.; Nobre, M.F.; Schumann, P.; Nunes, O.C.; Manaia, C.M.. "Paenibacillus humicus sp. nov., isolated from poultry litter compost". International Journal of Systematic and Evolutionary Microbiology 57 10 (2007): 2267-2271. http://www.scopus.com/inward/record.url?eid=2-s2.0-35648982373&partnerID=MN8TOARS. 10.1099/ijs.0.65124-0 Moreira, J.L.; Polidoro, A.M.; Heitor, C.; Nunes, O.C.; Alves, A.; Santos, L.. "Biodegradation of 2,4-dichlorophenol in an aerobic reactor". Fresenius Environmental Bulletin 15 4 (2006): 289-294. http://www.scopus.com/inward/record.url?eid=2-s2.0-33645874786&partnerID=MN8TOARS. Da Silva, M.F.; Tiago, I.; Veríssimo, A.; Boaventura, R.A.; Nunes, O.C.; Manaia, C.M.. "Antibiotic resistance of enterococci and related bacteria in an urban wastewater treatment plant". FEMS Microbiology Ecology 55 2 (2006): 322-329. http://www.scopus.com/inward/record.url?eid=2-s2.0-33644955416&partnerID=MN8TOARS. 10.1111/j.1574-6941.2005.00032.x Coelho, C.; Oliveira, A.S.; Pereira, M.F.R.; Nunes, O.C.. "The influence of activated carbon surface properties on the adsorption of the herbicide molinate and the bio-regeneration of the adsorbent". Journal of Hazardous Materials 138 2 (2006): 343-349. http://www.scopus.com/inward/record.url?eid=2-s2.0-33750328557&partnerID=MN8TOARS. 10.1016/j.jhazmat.2006.05.062 Correia, P.; Boaventura, R.A.R.; Reis, M.A.M.; Nunes, O.C.. "Effect of operating parameters on molinate biodegradation". Water Research 40 2 (2006): 331-340. http://www.scopus.com/inward/record.url?eid=2-s2.0-29644437916&partnerID=MN8TOARS. 10.1016/j.watres.2005.11.016 Dias-Machado, M.; Madeira, L.M.; Nogales, B.; Nunes, O.C.; Manaia, C.M.. "Treatment of cork boiling wastewater using chemical oxidation and biodegradation". Chemosphere 64 3 (2006): 455-461. http://www.scopus.com/inward/record.url?eid=2-s2.0-33744526347&partnerID=MN8TOARS. 10.1016/j.chemosphere.2005.11.067 Castro, M.; Silva-Ferreira, A.C.; Manaia, C.M.; Nunes, O.C.. "A case study of molinate application in a Portuguese rice field: Herbicide dissipation and proposal of a clean-up methodology". Chemosphere 59 7 (2005): 1059-1065. http://www.scopus.com/inward/record.url?eid=2-s2.0-16844384946&partnerID=MN8TOARS. 10.1016/j.chemosphere.2004.11.041 Barroso, M.F.; Nunes, O.C.; Vaz, M.C.; Delerue-Matos, C.. "Square-wave voltametric method for determination of molinate concentration in a biological process using a hanging mercury drop electrode". Analytical and Bioanalytical Chemistry 381 4 (2005): 879-883. http://www.scopus.com/inward/record.url?eid=2-s2.0-16444385957&partnerID=MN8TOARS. 10.1007/s00216-004-2971-9 Manaia, C.M.; Nogales, B.; Weiss, N.; Nunes, O.C.. "Gulosibacter molinativorax gen. nov., a molinate-degrading bacterium, and classification of 'Brevibacterium helvolum' DSM 20419 as Pseudoclavibacter helvolus gen. nov., sp. nov". International Journal of Systematic and Evolutionary Microbiology 54 3 (2004): 783-789. http://www.scopus.com/inward/record.url?eid=2-s2.0-2942631116&partnerID=MN8TOARS. 10.1099/ijs.0.02851-0 Silva, M.; Fernandes, A.; Mendes, A.; Manaia, C.M.; Nunes, O.C.. "Preliminary feasibility study for the use of an adsorption/bio-regeneration system for molinate removal from effluents". Water Research 38 11 (2004): 2677-2684. http://www.scopus.com/inward/record.url?eid=2-s2.0-2942650486&partnerID=MN8TOARS. 10.1016/j.watres.2004.03.016 Manaia, C.M.; Nunes, O.C.; Nogales, B.. "Caenibacterium thermophilum gen. nov., sp. nov., isolated from a thermophilic aerobic digester of municipal sludge". International Journal of Systematic and Evolutionary Microbiology 53 5 (2003): 1375-1382. http://www.scopus.com/inward/record.url?eid=2-s2.0-0141595089&partnerID=MN8TOARS. 10.1099/ijs.0.02622-0 Barreiros, L.; Nogales, B.; Manaia, C.M.; Silva Ferreira, A.C.; Pieper, D.H.; Reis, M.A.; Nunes, O.C.. "A novel pathway for mineralization of the thiocarbamate herbicide molinate by a defined bacterial mixed culture". Environmental Microbiology 5 10 (2003): 944-953. http://www.scopus.com/inward/record.url?eid=2-s2.0-0141676301&partnerID=MN8TOARS. 10.1046/j.1462-2920.2003.00492.x Manaia, C.M.; Nogales, B.; Nunes, O.C.. "Tepidiphilus margaritifer gen. nov., sp. nov., isolated from a thermophilic aerobic digester". International Journal of Systematic and Evolutionary Microbiology 53 5 (2003): 1405-1410. http://www.scopus.com/inward/record.url?eid=2-s2.0-0141502479&partnerID=MN8TOARS. 10.1099/ijs.0.02538-0 Nunes, O.C.; Manaia, C.M.; Da Costa, M.S.; Santos, H.. "Compatible solutes in the thermophilic bacteria Rhodothermus marinus and 'Thermus thermophilus'". Applied and Environmental Microbiology 61 6 (1995): 2351-2357. http://www.scopus.com/inward/record.url?eid=2-s2.0-0029031690&partnerID=MN8TOARS. Pereira, M.M.; Antunes, A.M.; Nunes, O.C.; da Costa, M.S.; Teixeira, M.. "A membrane-bound HIPIP type center in the thermohalophile Rhodothermus marinus". FEBS Letters 352 3 (1994): 327-330. http://www.scopus.com/inward/record.url?eid=2-s2.0-0027991814&partnerID=MN8TOARS. 10.1016/0014-5793(94)00985-6 Chung, A.P.; Nunes, O.C.; Tindall, B.J.; da Costa, M.S.. "The effect of the growth medium composition on the fatty acids of Rhodothermus marinus and ‘Thermus thermosphilus’ HB-8". FEMS Microbiology Letters 112 1 (1993): 13-18. http://www.scopus.com/inward/record.url?eid=2-s2.0-0027255540&partnerID=MN8TOARS. 10.1111/j.1574-6968.1993.tb06416.x Nunes, O.C.; Donato, M.M.; Manaia, C.M.; Da Costa, M.S.. "The Polar Lipid and Fatty Acid Composition of Rhodothermus Strains". Systematic and Applied Microbiology 15 1 (1992): 59-62. http://www.scopus.com/inward/record.url?eid=2-s2.0-0026549702&partnerID=MN8TOARS. 10.1016/S0723-2020(11)80139-6 Nunes, O.C.; Donato, M.M.; Da Costa, M.S.. "Isolation and Characterization of Rhodothermus Strains from S. Miguel, Azores". Systematic and Applied Microbiology 15 1 (1992): 92-97. http://www.scopus.com/inward/record.url?eid=2-s2.0-0026509661&partnerID=MN8TOARS. 10.1016/S0723-2020(11)80144-X Manaia, C.M.; Nunes, O.C.; Morais, P.V.; Da Costa, M.S.. "Heterotrophic plate counts and the isolation of bacteria from mineral waters on selective and enrichment media". Journal of Applied Bacteriology 69 6 (1990): 871-876. http://www.scopus.com/inward/record.url?eid=2-s2.0-0025695056&partnerID=MN8TOARS. 10.1111/j.1365-2672.1990.tb01586.x

Activities

Supervision

	Thesis Title Role	Degree Subject (Type) Institution / Organization
2022/03/01 - 2026/02/28	Strategies to reduce the load of antibiotic resistant bacteria and related genes during conventional activated sludge wastewater treatment Supervisor of Sara Ribeirinho Soares	Environmental Engineering (PhD) Universidade do Porto Faculdade de Engenharia, Portugal
2023 - 2023	Purificação de água através da utilização de nanomateriais Co-supervisor	Engenharia do Ambiente (Master) Universidade do Porto Faculdade de Engenharia, Portugal
2022 - 2022	Otimização de Processos de Produção de Biomassa, Estabilização de Extratos e Formulação de Produtos Baseados em Microalgas e Cianobactérias com Aplicações em Agricultura Supervisor	Engenharia Química (Master) Universidade do Porto Faculdade de Engenharia, Portugal
2022 - 2022	Membranas catalíticas para a desinfeção de águas Supervisor	Engenharia Química (Master) Universidade do Porto Faculdade de Engenharia, Portugal
2022 - 2022	Otimização de processos de produção de biomassa, estabilização de extratos e formulação de produtos baseados em microalgas e cianobactérias com aplicações em agricultura Supervisor
2016 - 2022	Measurement of the impact of antibiotic resistance discharge in wastewater and in soil: ecological aspects Co-supervisor of Gianuario Fortunato	Biotecnologia (PhD) Universidade Católica Portuguesa Escola Superior de Biotecnologia, Portugal
2021 - 2021	Estudo das propriedades antimicrobianas de tintas em pó Supervisor	Engenharia Química (Master) Universidade do Porto Faculdade de Engenharia, Portugal
2021 - 2021	Combination of coagulation/flocculation and Fenton processes in a WWTP tertiary treatment: Disinfection of treated urban effluents for reuse Co-supervisor	Bioengenharia (Master) Universidade do Porto Faculdade de Engenharia, Portugal
2014 - 2020/10	Processos catalíticos integrados para tratamento de poluentes orgânicos e desinfecção de águas Co-supervisor of Nuno Filipe Figueiredo Moreira	Mestrado Integrado em Engenharia do Ambiente (Master) Universidade do Porto Faculdade de Engenharia, Portugal
2020 - 2020	Análise da microbiota da água da rede de abastecimento de uma unidade de produção de tintas Supervisor	Engenharia Química (Master) Universidade do Porto Faculdade de Engenharia, Portugal
2020 - 2020	Structure-function analysis of a carbohydrate esterase family 5 enzyme from Thielavia terrestris Supervisor	Bioengenharia (Master) Universidade do Porto Faculdade de Engenharia, Portugal
2020 - 2020	Controlo do processo de produção de leite com chocolate Supervisor	Bioengenharia (Master) Universidade do Porto Faculdade de Engenharia, Portugal
2020 - 2020	Assessing the effects of the operational conditions of a THP unit on the energy balance of a wastewater facility Supervisor	Bioengenharia (Master) Universidade do Porto Faculdade de Engenharia, Portugal
2016 - 2020	Advanced wastewater treatment: organic micropollutants, human pathogens and antibiotic resistance genes Co-supervisor of Nuno Filipe F. Moreira	Engenharia Química e Biológica (PhD) Universidade do Porto Faculdade de Engenharia, Portugal
2019 - 2019	Desenvolvimento de tecnologia para purificação de água através do uso de nanomateriais Co-supervisor of José Ricardo Monteiro Barbosa	Mestrado Integrado em Engenharia Química (Master) Universidade do Porto Faculdade de Engenharia, Portugal
2019 - 2019	Validação de metodologias para o controlo de Brettanomyces/Dekkera em vinhos tintos Supervisor	Bioengenharia (Master) Universidade do Porto Faculdade de Engenharia, Portugal
2019 - 2019	Avaliação do grau de contaminação microbiológica em tintas através de um método de deteção rápida de partículas Supervisor	Engenharia Química (Master) Universidade do Porto Faculdade de Engenharia, Portugal
2019 - 2019	Estudo e Caracterização Microbiológica de Tintas Decorativas Aquosas numa Unidade Industrial de Produção de Tintas Supervisor	Engenharia Química (Master) Universidade do Porto Faculdade de Engenharia, Portugal
2018 - 2018	Aplicação de nanomateriais na desinfeção de água para consumo humano. Co-supervisor of Ana Sofia Guedes Gorito dos Santos	Mestrado Integrado em Engenharia do Ambiente (Master)
2014 - 2018	Molinate degradation pathway in G. molinativorax ON4T: an open door for white biotechnology (Post-doc) Supervisor of Ana Rita Rego Lopes
2013 - 2018	Molecular bases of antibiotic resistance selection and mobilization in drinking waters (Post-Doc) Co-supervisor of Ivone C. Vaz-Moreira
2017 - 2017	Desenvolvimento de tecnologia para purificação de água através do uso de nanomateriais Co-supervisor of Mariana Cerdeira Lopes Costa Pinto	Mestrado Integrado em Engenharia do Ambiente (Master) Universidade do Porto Faculdade de Engenharia, Portugal
2017 - 2017	Fusarium graminearum and F. culmorum isolates: pathogen-distribution and DON- production in Triticum aestivum influenced by TRI-inhibitors Supervisor	Bioengenharia (Master) Universidade do Porto Faculdade de Engenharia, Portugal
2016 - 2017	Estudo da aptidão de microrganismos autóctones de ambientes mineiros na recuperação de metais críticos Co-supervisor of Francisca Barbosa Brás	Mestrado em Engenharia de Minas e Geo-Ambiente (Master) Universidade do Porto Faculdade de Engenharia, Portugal
2014 - 2017	Diversity of microorganisms able to transform or degrade antibiotics (Post-doc) Supervisor of Patrícia J.M. M. dos Reis
2014 - 2017	Application of microencapsulation to different systems with biomedical and technological interest (Post-doc) Co-supervisor of Berta M. A. Nogueira Estevinho
2016 - 2016	Thermophilic Biofiltration: Start-up phase optimization for VOCs and odorous compounds treatment utilizing modified plastic carrier material Supervisor	Engenharia Química (Master) Universidade do Porto Faculdade de Engenharia, Portugal
2015 - 2016	Avaliação do risco de exposição a agentes biológicos: Reprodutibilidade dos métodos DGS, NTP 833 e MIAR(BIO) em Matadouros Co-supervisor of Helena Maria Mendes Guimarães	Mestrado em Engenharia de Segurança e Higiene Ocupacionais (Master) Universidade do Porto Faculdade de Engenharia, Portugal
2013 - 2016	Relationship between metal and antibiotic resistance: Implications in agricultural crops (Post-doc) Co-supervisor of Cristina Becerra Castro
2011 - 2016	Tracking antibiotic resistance from hospital effluents to the surrounding environment Co-supervisor of Ana Rita Boura Varela	Biotecnologia (PhD) Universidade Católica Portuguesa Escola Superior de Biotecnologia, Portugal
2011 - 2016	Acetification of Port wine. A preliminary step for vinegar making Co-supervisor of Maria Josefina Tonello	Ciências do Consumo Alimentar e Nutrição Universidade do Porto Faculdade de Ciências da Nutrição e Alimentação, Portugal
2015 - 2015	Sulfamethoxazole Biodegradation, an Uncommon Property with Potential Application for Wastewater Treatment Supervisor	Engenharia do Ambiente (PhD) Universidade do Porto Faculdade de Engenharia, Portugal
2015 - 2015	Estudo das Comunidades Bacterianas em Locais de Deposição de Resíduos Mineiros Co-supervisor	Engenharia do Ambiente (Master) Universidade do Porto Faculdade de Engenharia, Portugal
2015 - 2015	Resistência de Staphylococcus a antibióticos e metais nas águas do rio Douro Supervisor	Engenharia Química (Master) Universidade do Porto Faculdade de Engenharia, Portugal
2015 - 2015	Prevalência de bactérias resistentes a antimicrobianos em água natural Supervisor	Engenharia Química (Master) Universidade do Porto Faculdade de Engenharia, Portugal
2009 - 2015	Desinfection of hospital residue by alkaline hydrolysis. Characterization of efficiency and emissions Co-supervisor of Sílvia Cardinal Pinho	Environmental Engineering (PhD) Universidade do Porto Faculdade de Engenharia, Portugal
2014 - 2014	Evaluation of tertiary UV treatment in the elimination of antibiotic resistant bacteria and their genetic determinants (Post-doc) Supervisor of Joana I. C. Bondoso
2014 - 2014	Antimicrobial Activity of Essential Oils: Protection of Stored Food Co-supervisor of Diana Mafalda Ferreira Cancela Moura	Mestrado Integrado em Bioengenharia (Master) Universidade do Porto Faculdade de Engenharia, Portugal
2014 - 2014	presença de bactérias coliformes e Escherichia coli resistentes aos antibióticos ciprofloxacina e estreptomicina em água natural Supervisor	Engenharia Química (Master) Universidade do Porto Faculdade de Engenharia, Portugal
2014 - 2014	Prevalência de Bactérias Resistentes a Agentes Antimicrobianos em Água Natural Supervisor	Engenharia Química (Master) Universidade do Porto Faculdade de Engenharia, Portugal
2014 - 2014	Análise química e microbiológica de lavação de rolhas de cortiça Supervisor	Engenharia Química (Master) Universidade do Porto Faculdade de Engenharia, Portugal
2014 - 2014	Feasibility of using a TiO2 containing paint coat to inactivate microorganisms in an aqueous system Co-supervisor	Engenharia Química (Master) Universidade do Porto Faculdade de Engenharia, Portugal
2012 - 2014	Removal of micropollutants from wastewaters (Post-doc) Supervisor of Patrícia J.M. M. dos Reis
2013 - 2013	Estudo da cinética de degradação de sulfametoxazole por uma cultura mista Supervisor of Sara Nicole Ferreira Monteiro	Mestrado Integrado em Engenharia do Ambiente (Master) Universidade do Porto Faculdade de Engenharia, Portugal
2013 - 2013	Characterization of the novel molinate hydrolase for bioremediation processes Co-supervisor	Mestrado Integrado em Bioengenharia (Master) Universidade do Porto Instituto de Ciências Biomédicas Abel Salazar, Portugal
2013 - 2013	Caracterização e desenvolvimento de tintas para fotoinativação de microrganismos em meio aquoso Co-supervisor	Engenharia Química (Master) Universidade do Porto Faculdade de Engenharia, Portugal
2009 - 2013	Optimization of the humification process during composting and recovery evaluation of the humic-like substances Co-supervisor of Maria Elisabete Ferreira Silva	Environmental Engineering (PhD) Universidade de Lisboa Instituto Superior de Agronomia, Portugal
2012 - 2012	Identification and Characterization of Bacterial Contamination in the Environment Supervisor of José Eduardo Alves Teixeira	Mestrado Integrado em Engenharia Química (Master) Universidade do Porto Faculdade de Engenharia, Portugal
2011 - 2012	Influência dos antimicrobianos nas comunidades bacterianas e nos níveis de resistência de uma estação de tratamento de águas residuais Co-supervisor of Ana Isabel Figueiredo Novo	Mestrado em Microbiologia Aplicada (Master) Universidade Católica Portuguesa Escola Superior de Biotecnologia, Portugal
2007 - 2012	Antibiotic resistance in the water cycle Co-supervisor of Ivone Cristina Vaz Moreira	Biotechnology (PhD) Universidade Católica Portuguesa Escola Superior de Biotecnologia, Portugal
2011 - 2011	Estudo e desenvolvimento de tintas para fotoinactivação de microrganismos para aplicações hospitalares Supervisor	Mestrado Integrado em Engenharia Química Universidade do Porto Faculdade de Engenharia, Portugal
2011 - 2011	Optimização do processo de limpeza e esterilização de fotobioreactores de produção de microalgas Supervisor	Mestrado Integrado em Engenharia Quím (Master) Universidade do Porto Faculdade de Engenharia, Portugal
2010 - 2010	Towards a sustainable rice culture: the role of microbiota Supervisor	Engenharia do Ambiente (PhD) Universidade do Porto Faculdade de Engenharia, Portugal
2001 - 2009/07	Biological degradation of molinate by a bacterial consortium: study of the dynamic of the population and of the metabolic degradative pathway Supervisor of Luísa Maria Ribeiro da Silva Barreiros	Environmental Engineering (PhD) Universidade do Porto Faculdade de Engenharia, Portugal
2009 - 2009	Estudo das emissões gasosas por processos de desodorização Supervisor of Vera Mónica Almeida de Sousa	Mestrado Integrado em Engenharia Química (Master) Universidade do Porto Faculdade de Engenharia, Portugal
2008 - 2008	Acompanhamento do arranque de uma ETAR Supervisor of Lara Alexandra Bioso Moreno Cerdeira	Mestrado Integrado em Engenharia Química (Master) Universidade do Porto Faculdade de Engenharia, Portugal
2008 - 2008	Estudo do tratamento de águas residuais urbanas Supervisor of Bruno André da Costa Coelho	Mestrado Integrado em Engenharia Química (Master) Universidade do Porto Faculdade de Engenharia, Portugal
2008 - 2008	Pesquisa de determinantes genéticos em isolados ambientais resistentes a antibióticos Supervisor	Mestrado Integrado em Engenharia Química (Master) Universidade do Porto Faculdade de Engenharia, Portugal
2008 - 2008	Study of biofilms formed by herbicide degrading microorganisms from agricultural soils Supervisor of Maria Jacinto Guerra de Oliveira Costa	Mestrado Integrado em Engenharia Química (Master) Universidade do Porto Faculdade de Engenharia, Portugal
2008 - 2008	Avaliação da degradação de ciprofloxacina em lamas activadas Supervisor	Mestrado Integrado em Engenharia Química (Master) Universidade do Porto Faculdade de Engenharia, Portugal
2008 - 2008	Biofilm Dynamics and Drinking Water Stability: Effects of Hidrodynamics and Surface Materials Co-supervisor	Ciências de Engenharia (PhD) Universidade do Porto Faculdade de Engenharia, Portugal
2007 - 2008	Prevalência da resistência a antibióticos em isolados de Staphylococcus provenientes de uma ETAR Municipal Supervisor of Eduarda Sofia Arrepia Costa Serapicos	Mestrado Em Engenharia do Ambiente (Master) Universidade do Porto Faculdade de Engenharia, Portugal
2005 - 2005	Reabilitação de Solos Observada Através de Respirometria - Análise de Sinal em Sistemas Biológicos Co-supervisor	Ciências de Engenharia (PhD) Universidade do Porto Faculdade de Engenharia, Portugal
2004 - 2005	Degradação Biológica de Polifenóis Supervisor of Maria Manuela Dias Machado	Mestrado em Engenharia do Ambiente (Master) Universidade do Porto Faculdade de Engenharia, Portugal
2002 - 2003	Co-Compostagem de Resíduos Sólidos Avícolas e de Resíduos Florestais Supervisor of Maria Elisabete Ferreira Silva	Mestrado em Engenharia do Ambiente (Master) Universidade do Porto Faculdade de Engenharia, Portugal
2001 - 2003	Estudo Cinético da Biodegradação do Molinato Supervisor of Patrícia Carla dos Santos Correia	Mestrado em Engenharia do Ambiente (Master) Universidade do Porto Faculdade de Engenharia, Portugal
2001 - 2002	Métodos Analíticos em Processos de Biodegradação de Pesticidas - O Molinato Supervisor of Maria de Fátima de Sá Barroso	Mestrado em Engenharia do Ambiente (Master) Universidade do Porto Faculdade de Engenharia, Portugal

Event organisation

	Event name Type of event (Role)	Institution / Organization
2022/11/05 - 2023/07/15	BioRemid2023 - 3rd International Meeting on New Strategies in Bioremediation / Restoration Processes, 29-30th of June 2023 FHNW Campus Muttenz, Switzerland (2023/06/29 - 2023/06/30) Conference (Member of the Organising Committee)	Universidade do Porto Faculdade de Engenharia, Portugal
2018/10 - 2020/12	2nd International Meeting on New Strategies in Bioremediation Processes (BioRemid2019) (2019/10/24 - 2019/10/25) Conference (President of the Organising Committee)	Universidade do Porto Faculdade de Engenharia, Portugal

Jury of academic degree

	Topic Role	Candidate name (Type of degree) Institution / Organization
2023	Evaluation of the potential risks of antibioticresistant bacteria and genes (ARBs & ARGs), and microplastics (MPs); and monitoring of their removal in water treatment processes (Thesis) Arguer	Shabila Perveen (PhD) Universidad Rey Juan Carlos, Spain
2023	Investigação da resistência antimicrobiana e do novo coronavírus em Sistema de tratamento de esgoto sanitário com desinfecção por Ultravioleta (Thesis) Arguer	Amanda Teodósio de Oliveira (Master) Universidade Federal de Minas Gerais Escola de Engenharia, Brazil
2023	Isolation and characterization of plastic polyethylene terephthalate (PET) degrading and polyalkanoates (PHAs) producing bacteria from soil and water (Thesis) Main arguer	Muhammad Bashir Saidu (PhD) University of Saint Joseph, China
2020	Carbamazepine and diclofenac: Biodegradation, metabolic pathways and fate in aerobic granular sludge reactors (Thesis) Main arguer	Vânia Sofia de Sousa Bessa (PhD) Universidade Católica Portuguesa Escola Superior de Biotecnologia, Portugal
2020	Impact of genomic bioprospecting on the optimization of metals obtaining processes in a circular economy perspective (Thesis) Main arguer	Beatriz Fidalgo Gonçalves Pereira Rito (Master) Universidade de Coimbra Faculdade de Ciencias e Tecnologia, Portugal
2019	Investigation of the N2O emissions in wastewater treatment plants, using a molecular, analytical and engineering approach (Thesis) Main arguer	Anabela Carvalho Vieira (PhD) Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica António Xavier, Portugal
2019	Ecology and antimicrobial resistance of Ralstonia spp. in the urban water cycle (Thesis) Main arguer	Félix Pompeyo Ferro Mayhua (PhD) Universidade Católica Portuguesa Escola Superior de Biotecnologia, Portugal
2018	Microbial diversity and anaerobic metabolisms in the subsurface of the Iberian pyritic belt (Thesis) Main arguer	Tânia de Jesus Travassos Leandro (PhD) Universidade de Coimbra Faculdade de Ciencias e Tecnologia, Portugal
2017	Biorremediación de aguas contaminadas con hidrocarburos mediante sistemas Bio-absorbentes (Thesis) Arguer	Alfonso Rodríguez Calvo (PhD) Universidad de Granada, Spain
2016	The osmoadaptative strategy of two slightly halophilic planctomycetes species (Thesis) Main arguer	Ana Catarina Morouço Ferreira (PhD) Universidade de Coimbra Faculdade de Ciencias e Tecnologia, Portugal
2013	Conjugates of peptide nucleic acid-biotin for the detection of bacteria using In situ hybridization (Thesis) Main arguer	Diogo Henrique Fernandes Constante (Master) Universidade do Porto Faculdade de Engenharia, Portugal
2013	Microbial diversity and dynamics of a groundwater and a bottled mineral water (Thesis) Main arguer	Luís André Antunes Baptista França (PhD) Universidade de Coimbra Faculdade de Ciencias e Tecnologia, Portugal
2011	Persistence and dispersion of Acinetobacter spp. In the urban water cycle (Thesis) Main arguer	Carlos André Narciso Rocha (Master) Universidade do Minho, Portugal
2011	Descrição de duas novas espécies do género Nevskia da classe Gammaproteobacteria (Thesis) Main arguer	Tânia de Jesus Travassos Leandro (Master) Universidade Nova de Lisboa Faculdade de Ciências e Tecnologia, Portugal
2011	Characterization and detection of extended-spectrum beta-lactanases in Enterobacteriaceae isolated from wastewater (Thesis) Main arguer	Ana Rebelo de Carvalho Alves Vieira (Master) Universidade Católica Portuguesa Escola Superior de Biotecnologia, Portugal
2011	Padrões de resistência antimicrobiana de Enterobacteriaceae isolados de água (Thesis) Main arguer	Elisabete Alexandra Duarte Serra (Master) Universidade Católica Portuguesa Escola Superior de Biotecnologia, Portugal
2011	Perfis de resistência a antimicrobianos (Thesis) Main arguer	Sónia Teresa Neto Queirós Paupério (Master) Universidade Católica Portuguesa Escola Superior de Biotecnologia, Portugal
2009	Produção de biomassa aquática como fonte de lípidos para biocombustíveis (Thesis) Main arguer	Sandra Cristina Oliveira (Master) Instituto Politécnico do Porto Instituto Superior de Engenharia do Porto, Portugal
2008	Dokdonella fugitiva sp. nov., uma nova espécie da classe Gammaproteobacteria isolada de solo de compostagem (Thesis) Main arguer	Ana Sofia Cunha (Master) Universidade de Coimbra Faculdade de Ciencias e Tecnologia, Portugal
2008	Descrição de duas novas espécies halofílicas moderadas (Thesis) Main arguer	Luís André Antunes Baptista França (Master) Universidade de Coimbra Faculdade de Ciencias e Tecnologia, Portugal
2008	Caracterização de uma nova espécie bacteriana isolada do efluente ácido da escombreira “Barragem Velha” das minas de urânio da Urgeiriça (Thesis) Main arguer	Sónia Margarida Pereira (Master) Universidade de Coimbra Faculdade de Ciencias e Tecnologia, Portugal
2004	Digestão anaeróbia da fracção orgânica de RSU (Thesis) Main arguer	Eugénia Gonçalo (Master) Universidade do Minho, Portugal
2003	Diversidade microbiológica de um ambiente contaminado com crómio: caracterização de uma população resistente e redutora de crómio (VI) (Thesis) Main arguer	Romeu Miranda Francisco (Master) Universidade de Coimbra Faculdade de Ciencias e Tecnologia, Portugal
2002	Caracterização estrutural de lípidos de bactérias termófilas (Thesis) Main arguer	Ana Margarida Ferreira (Master) Universidade de Coimbra Faculdade de Ciencias e Tecnologia, Portugal
2001	Descrição de duas novas espécies termoacidófilas do género Alicyclobacillus (Thesis) Main arguer	Luciana Pinto (Master) Universidade de Coimbra Faculdade de Ciencias e Tecnologia, Portugal

Association member

	Society Organization name	Role
2000 - Current	Portuguese Society of Microbiology

Committee member

	Activity description Role	Institution / Organization
2022 - Current	Member of the Ethics Committee Member	Universidade do Porto Faculdade de Engenharia, Portugal
2019 - Current	Programa Mentoria da UP - Bioengineering Member	Universidade do Porto Faculdade de Engenharia, Portugal
2014 - Current	Member of the Chemical Engineering Department Council Member
2008 - Current	Mostra UP - Bioengineering and Chemical Engineering Courses Member	Universidade do Porto Faculdade de Engenharia, Portugal
2021 - 2023	Member of the Scientific Commission of the Master in Chemical Engineering Member	Universidade do Porto Faculdade de Engenharia, Portugal

Conference scientific committee

	Conference name	Conference host
2018 - 2018	Challenges and Solutions related to Xenobiotics and Antimicrobial Resistance in the Framework of Urban WasteWater Reuse: Towards a Blue Circle Society	Limassol, Cyprus

Course / Discipline taught

	Academic session	Degree Subject (Type)	Institution / Organization
2021 - Current	Engenharia de Biorrecursos	Bioengenharia	Universidade do Porto Faculdade de Engenharia, Portugal
2006 - Current	Biologia Celular	Bioengenharia	Universidade do Porto Faculdade de Engenharia, Portugal
2004 - Current	Microbiologia Ambiental	Engenharia do Ambiente (Licenciatura)	Universidade do Porto Faculdade de Engenharia, Portugal
2008 - 2021	Bioquímica Microbiana	Bioengenharia	Universidade do Porto Faculdade de Engenharia, Portugal
2001 - 2008	Microbiologia	Ciências de Engenharia - Engenharia de Minas e Geoambiente	Universidade do Porto Faculdade de Engenharia, Portugal
1995 - 2005	Bioengenharia AII	Engenharia Química	Universidade do Porto Faculdade de Engenharia, Portugal
1998 - 2004	Microbiologia Aplicada	Engenharia do Ambiente	Universidade do Porto Faculdade de Engenharia, Portugal
1995 - 2004	Bioengenharia AI	Engenharia Química (Mestrado integrado)	Universidade do Porto Faculdade de Engenharia, Portugal
1996 - 1997	Microbiologia e Bioquímica	Engenharia dos Processos Químicos	Universidade do Porto Faculdade de Engenharia, Portugal

Evaluation committee

	Activity description Role	Institution / Organization	Funding entity
2024 - 2024	Project proposals, OPUS/OPUS-LAP, National Science Centre (NCN), Poland Member		Narodowe Centrum Nauki
2023 - 2023	Project Proposal, BiodivERsA 2023, European Commission Evaluator
2021/02 - 2022/11/04	Project proposals, OPUS/OPUS-LAP, National Science Centre (NCN), Poland Evaluator		National Science Centre
2022 - 2022	Project Proposal,Special Programs / PNGP - Programa Nova Geração de Pesquisadores /Auxílio à Pesquisa , FAPESP, Brazil Evaluator
2019 - 2022	Final reports of projects on Environmental Science, Fundação para a Ciência e Tecnologia, Portugal. Evaluator	Fundação para a Ciência e a Tecnologia, Portugal	Fundação para a Ciência e a Tecnologia
2020/12 - 2020/12	Project proposals, Antimicrobial resistance Understand, innovate, act, Agence National de la Reserche (ANR), France Member
2020/11 - 2020/12	Project proposals, Biotechnology, Agência Nacional de Inovação (ANI) Evaluator
2020 - 2020	NWA-ORC project proposals, Dutch National Research Agenda (NWA), Netherlands. Evaluator
2019 - 2020	Project proposals, India-UK Tackling AMR in the Environment from Antimicrobial Manufacturing Waste, NERC, Science of the Environment, UK Research and Innovation. Evaluator	UK Research and Innovation, United Kingdom	UK Research and Innovation
2019 - 2019	P-Stand-alone Project proposal, Austrian Science Fund, Austria. Evaluator	Fonds zur Förderung der wissenschaftlichen Forschung, Austria	Fonds zur Förderung der wissenschaftlichen Forschung
2019 - 2019	Project proposals, Joint NSFC - ISF Program, Israel Science Foundation, Israel. Evaluator	Israel Science Foundation, Israel	Israel Science Foundation
2019 - 2019	BiodivERsA 2018 Project proposals, EU. Evaluator	European Commission, Belgium	European Commission
2019 - 2019	Project proposals, Swiss National Science Foundation (SNSF), Switzerland. Evaluator	Schweizerischer Nationalfonds zur Förderung der wissenschaftlichen Forschung, Switzerland	Schweizerischer Nationalfonds zur Förderung der wissenschaftlichen Forschung
2017 - 2017	Project proposals, Agencia Nacional de Promocion Cientifica y Tecnologica, Argentina. Evaluator	Agencia Nacional De Promoción Científica Y Tecnológica, Argentina	Agencia Nacional De Promoción Científica Y Tecnológica
2017 - 2017	P-Stand-alone Project proposal, Austrian Science Fund, Austria. Evaluator	Fonds zur Förderung der wissenschaftlichen Forschung, Austria	Fonds zur Förderung der wissenschaftlichen Forschung
2014 - 2015	Final reports of projects on Environment and Climatic Alterations Evaluator	Fundação para a Ciência e a Tecnologia, Portugal	Fundação para a Ciência e a Tecnologia
2014 - 2014	Project proposals, Joint NSFC - ISF Program Evaluator	Israel Science Foundation, Israel
2014 - 2014	Project proposals, Convocatoria interna de la Universidad Antonio Nariño Evaluator	Universidad Antonio Nariño, Vicerrectoría de Ciencia, Tecnologia e Innovación, Colombia
2010 - 2010	Project proposals, Investigação Científica na pré-graduação Evaluator	Universidade do Porto, Portugal	Universidade do Porto
2007 - 2007	Project proposals, Investigação Científica na pré-graduação, Universidade do Porto, Portugal Evaluator	Universidade do Porto, Portugal	Universidade do Porto

Journal scientific committee

	Journal title (ISSN)	Publisher
2014 - Current	PLoS ONE (1932-6203)	Public Library of Science
2020 - 2022/12/31	Microbial Biotechnology (1751-7915)	Wiley (Blackwell Publishing)
2011 - 2011	International Journal of Evolutionary Biology (2090-052X)	Hindawi Limited

Distinctions

Other distinction

2017	Scientiic merit Universidade do Porto Faculdade de Engenharia, Portugal
2016	Scientific merit Universidade do Porto Faculdade de Engenharia, Portugal
2015	Scientific merit Universidade do Porto Faculdade de Engenharia, Portugal
2013	Scientific merit Universidade do Porto Faculdade de Engenharia, Portugal
2012	Scientific merit Universidade do Porto Faculdade de Engenharia, Portugal