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Tom Coenye is full professor and leads the Laboratory of Pharmaceutical Microbiology at Ghent University (Belgium). His research is focused on microbial biofilm formation, the evaluation of novel strategies to prevent or eradicate biofilms, and the molecular basis of tolerance and resistance in biofilms. He is past-chair of the ESCMID Study Group for Biofilms and is one of the founding senior-editors of the journal ‘Biofilm’. For his work he received several awards and since 2019 he has each year been included on Clarivate’s list of Highly Cited Researchers. He has published over 310 publications in peer-reviewed journals indexed in Web of Science; those have attracted more than 20100 citations.
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Identification

Personal identification

Full name
Coenye Tom

Author identifiers

Ciência ID
BD15-72A7-AB76
ORCID iD
0000-0002-6407-0601
Affiliation

Positions / Appointments

Category
Host institution 		Employer
2022/03/15 - 2022/09/15 Visiting professor Københavns Universitet, Denmark
Projects

Contract

Designation Funders
2020/01/01 - 2025/12/31 Identification of adaptive mechanisms leading to reduced antibiotic susceptibility in bacterial biofilms using experimental evolution and machine learning approaches
NA
Principal investigator
Universiteit Gent, Belgium
 Bijzonder Onderzoeksfonds
Ongoing
2019/01/01 - 2022/12/31 Exploring the anti-inflammatory potential of Rothia mucilaginosa in chronic lung diseases
NA
Principal investigator
Universiteit Gent, Belgium
 Fonds Wetenschappelijk Onderzoek Vlaanderen
Ongoing
2019/01/01 - 2022/12/31 Developing a preclinical test platform that incorporates interpatient variability to lower the attrition rate in antimicrobial drug development
NA
Researcher
Universiteit Gent, Belgium
 Fonds Wetenschappelijk Onderzoek Vlaanderen
Ongoing
2018/10/01 - 2022/09/30 Physico-chemical heterogeneity and tolerance in polymicrobial biofilms
NA
Researcher
Universiteit Gent, Belgium
 China Scholarship Council
Ongoing
2018/10/01 - 2022/09/30 Probing the evolutionary robustness of antimicrobial combination therapy to combat biofilm-related infections caused by Gram-negative bacteria
NA
Principal investigator
Universiteit Gent, Belgium
 Bijzonder Onderzoeksfonds
Ongoing
2020/01/01 - 2022/06/30 PROspection for BIOactive compounds in the North Sea
NA
Researcher
Universiteit Gent, Belgium
 Agentschap Innoveren en Ondernemen
Ongoing
2017/01/01 - 2020/12/30 Exploring and exploiting the cystic fibrosis lung microbiome to design novel anti-inflammatory therapies
NA
Principal investigator
Universiteit Gent, Belgium
 Fonds Wetenschappelijk Onderzoek Vlaanderen
Ongoing
2017/10/01 - 2020/09/30 Developing a personalized approach for antimicrobial susceptibility testing in cystic fibrosis
NA
Researcher
Universiteit Gent, Belgium
 Koning Boudewijn Stichting
Ongoing
2017/01/01 - 2020/09/30 Multidisciplinary European training network for development of personalized anti-infective medical devices combining printing technologies and antimicrobial functionality
info:eu-repo/grantAgreement/EC/H2020/722467/EU
Universiteit Gent, Belgium
 European Commission
Ongoing
2016/10/01 - 2020/09/30 Mining the parvome of Burkholderia bacteria for novel anti-infective compounds
NA
Researcher
Universiteit Gent, Belgium
 Fonds Wetenschappelijk Onderzoek Vlaanderen
Ongoing
2016/10/01 - 2020/09/30 The role of the lung microbiome in early inflammatory responses leading to chronic obstructive pulmonary disease
NA
Researcher
Universiteit Gent, Belgium
 China Scholarship Council
Ongoing
2016/10/01 - 2020/09/30 The epigenetic regulation of gene expression provided by DNA methylation plays an important role in biofilm resistance and tolerance: mechanistic insights and the road to future
NA
Principal investigator
Universiteit Gent, Belgium
 Bijzonder Onderzoeksfonds
Ongoing
2014/01/01 - 2019/12/31 The role of host-microbiome interactions in the efficacy of antimicrobial agents
NA
Researcher
Universiteit Gent, Belgium
 Fonds Wetenschappelijk Onderzoek Vlaanderen
Concluded
2014/01/01 - 2019/12/31 Laser induced vapour nanobubbles as a novel therapeutic approach for treating biofilm-related infections
NA
Researcher
Universiteit Gent, Belgium
 Bijzonder Onderzoeksfonds
Concluded
2018/01/01 - 2018/12/31 UGent Burkholderia collection as a source of novel antibiotic compounds for the treatment of infections caused by multidrug resistant Gram-negative pathogens
NA
Researcher
Universiteit Gent, Belgium
 Universiteit Gent
Concluded
2018/01/01 - 2018/12/31 Equipment for the automatization in the microbiology laboratory
NA
Researcher
Universiteit Gent, Belgium
 Bijzonder Onderzoeksfonds
Concluded
2014/01/01 - 2018/09/30 Interfering with bacterial quorum sensing as a novel approach to treat chronically infected wounds
NA
Principal investigator
Universiteit Gent, Belgium
 China Scholarship Council

Universiteit Gent
Concluded
2017/09/01 - 2018/08/31 Plasma4Breathing
NA
Researcher
Universiteit Gent, Belgium
 Universiteit Gent
Concluded
2013/01/01 - 2017/12/31 The DOXP pathway as novel target for antibacterial chemotherapy
NA
Principal investigator
Universiteit Gent, Belgium
 Fonds Wetenschappelijk Onderzoek Vlaanderen
Concluded
2014/10/01 - 2017/09/30 Exploring the role of mini-proteins and toxin antitoxin modules in Burkholderia cenocepacia biofilm formation
NA
Principal investigator
Universiteit Gent, Belgium
 Fonds Wetenschappelijk Onderzoek Vlaanderen
Concluded
2015/10/01 - 2016/09/30 UGent Burkholderia collectie als bron van unieke antimicrobiële moleculen voor de behandeling van infecties met multi-resistente bacterien
NA
Researcher
Universiteit Gent, Belgium
 Universiteit Gent
Concluded
2013/07/01 - 2016/06/30 Indirect pathogenicity revisited - Molecular mechanisms of increased resistance in polymicrobial biofilms
NA
Principal investigator
Universiteit Gent, Belgium
 Bijzonder Onderzoeksfonds
Concluded
2015/01/01 - 2015/12/31 Equipment for establishment of three-dimensional tissue culture facility (microscope + flow cytometer)
NA
Principal investigator
Universiteit Gent, Belgium
 Bijzonder Onderzoeksfonds
Concluded
2012/04/01 - 2014/03/31 Ontwikkeling van een vernieuwend gamma van ontsmettingsmiddelen
NA
Researcher
Universiteit Gent, Belgium
 Agentschap Innoveren en Ondernemen
Concluded
Outputs

Publications

Journal article
  1. Tom Coenye; Karl-Jan Spittaels; Yvonne Achermann. "The role of biofilm formation in the pathogenesis and antimicrobial susceptibility of Cutibacterium acnes". Biofilm (2022): https://doi.org/10.1016/j.bioflm.2021.100063.
    10.1016/j.bioflm.2021.100063
  2. Adrien Knoops; Florence Vande Capelle; Laetitia Fontaine; Marie Verhaegen; Johann Mignolet; Philippe Goffin; Jacques Mahillon; et al. "The CovRS Environmental Sensor Directly Controls the ComRS Signaling System To Orchestrate Competence Bimodality in Salivarius Streptococci". mBio (2022): https://doi.org/10.1128/mbio.03125-21.
    10.1128/mbio.03125-21
  3. Xuerui Bao; Mona Bové; Tom Coenye. "Organic Acids and Their Salts Potentiate the Activity of Selected Antibiotics against Pseudomonas aeruginosa Biofilms Grown in a Synthetic Cystic Fibrosis Sputum Medium". Antimicrobial Agents and Chemotherapy (2022): https://doi.org/10.1128/AAC.01875-21.
    10.1128/AAC.01875-21
  4. Tom Coenye. "Do results obtained with RNA-sequencing require independent verification?". Biofilm (2021): https://doi.org/10.1016/j.bioflm.2021.100043.
    10.1016/j.bioflm.2021.100043
  5. Eliza Depoorter; Tom Coenye; Peter Vandamme; Maia Kivisaar. "Biosynthesis of Ditropolonyl Sulfide, an Antibacterial Compound Produced by Burkholderia cepacia Complex Strain R-12632". Applied and Environmental Microbiology 87 22 (2021): https://doi.org/10.1128/AEM.01169-21.
    10.1128/AEM.01169-21
  6. Tharwat Mohy El Dine; Ravikumar Jimmidi; Andrei Diaconu; Maude Fransolet; Carine Michiels; Julien De Winter; Emilie Gillon; et al. "Pillar[5]arene-Based Polycationic Glyco[2]rotaxanes Designed as Pseudomonas aeruginosa Antibiofilm Agents". Journal of Medicinal Chemistry (2021): https://doi.org/10.1021/acs.jmedchem.1c01241.
    10.1021/acs.jmedchem.1c01241
  7. Andrei Diaconu; Tom Coenye; Mihail Barboiu; Stéphane P. Vincent. "Dynamic Constitutional Frameworks as Antibacterial and Antibiofilm Agents". Angewandte Chemie International Edition (2021): https://doi.org/10.1002/anie.202109518.
    10.1002/anie.202109518
  8. Andrei Diaconu; Tom Coenye; Mihail Barboiu; Stéphane P. Vincent. "Dynamic Constitutional Frameworks as Antibacterial and Antibiofilm Agents". Angewandte Chemie (2021): https://doi.org/10.1002/ange.202109518.
    10.1002/ange.202109518
  9. Sara Van den Bossche; Emma De Broe; Tom Coenye; Eva Van Braeckel; Aurélie Crabbé. "The cystic fibrosis lung microenvironment alters antibiotic activity: causes and effects". European Respiratory Review (2021): https://doi.org/10.1183/16000617.0055-2021.
    10.1183/16000617.0055-2021
  10. Rosalie C. D. Swimberghe; Aurélie Crabbé; Roeland J. G. De Moor; Tom Coenye; Maarten A. Meire. "Model system parameters influence the sodium hypochlorite susceptibility of endodontic biofilms". International Endodontic Journal 54 9 (2021): 1557-1570. https://doi.org/10.1111/iej.13544.
    10.1111/iej.13544
  11. Gabriele Trespidi; Viola Camilla Scoffone; Giulia Barbieri; Federica Marchesini; Aseel Abualsha’ar; Tom Coenye; Francesca Ungaro; et al. "Antistaphylococcal Activity of the FtsZ Inhibitor C109". Pathogens 10 7 (2021): 886-886. https://doi.org/10.3390/pathogens10070886.
    10.3390/pathogens10070886
  12. Mona Bové; Xuerui Bao; Andrea Sass; Aurélie Crabbé; Tom Coenye. "The Quorum-Sensing Inhibitor Furanone C-30 Rapidly Loses Its Tobramycin-Potentiating Activity against Pseudomonas aeruginosa Biofilms during Experimental Evolution". Antimicrobial Agents and Chemotherapy 65 7 (2021): https://doi.org/10.1128/AAC.00413-21.
    10.1128/AAC.00413-21
  13. Karl-Jan Spittaels; Katleen van Uytfanghe; Christos C. Zouboulis; Christophe Stove; Aurélie Crabbé; Tom Coenye. "Porphyrins produced by acneic Cutibacterium acnes strains activate the inflammasome by inducing K+ leakage". iScience 24 6 (2021): 102575-102575. https://doi.org/10.1016/j.isci.2021.102575.
    10.1016/j.isci.2021.102575
  14. Sholeh Feizi; Clare M. Cooksley; George S. Bouras; Clive A. Prestidge; Tom Coenye; Alkis James Psaltis; Peter-John Wormald; Sarah Vreugde. "Colloidal silver combating pathogenic Pseudomonas aeruginosa and MRSA in chronic rhinosinusitis". Colloids and Surfaces B: Biointerfaces 202 (2021): 111675-111675. https://doi.org/10.1016/j.colsurfb.2021.111675.
    10.1016/j.colsurfb.2021.111675
  15. Ian Vandenbussche; Andrea Sass; Filip Van Nieuwerburgh; Marta Pinto-Carbó; Olga Mannweiler; Leo Eberl; Tom Coenye. "Detection of cytosine methylation in Burkholderia cenocepacia by single-molecule real-time sequencing and whole-genome bisulfite sequencing". Microbiology (2021): https://doi.org/10.1099/mic.0.001027.
    10.1099/mic.0.001027
  16. Eliza Depoorter; Evelien De Canck; Tom Coenye; Peter Vandamme. "Burkholderia Bacteria Produce Multiple Potentially Novel Molecules that Inhibit Carbapenem-Resistant Gram-Negative Bacterial Pathogens". Antibiotics 10 2 (2021): 147-147. https://doi.org/10.3390/antibiotics10020147.
    10.3390/antibiotics10020147
  17. Carlos C. F. Pleeging; Tom Coenye; Dimitris Mossialos; Hilde de Rooster; Daniela Chrysostomou; Frank A. D. T. G. Wagener; Niels A. J. Cremers. "Synergistic Antimicrobial Activity of Supplemented Medical-Grade Honey against Pseudomonas aeruginosa Biofilm Formation and Eradication". Antibiotics 9 12 (2020): 866-866. https://doi.org/10.3390/antibiotics9120866.
    10.3390/antibiotics9120866
  18. Tom Coenye; Birthe Kjellerup; Paul Stoodley; Thomas Bjarnsholt. "The future of biofilm research – Report on the ‘2019 Biofilm Bash’". Biofilm (2020): 100012-100012.
    10.1016/j.bioflm.2019.100012
  19. Eva Vandeplassche; Andrea Sass; Lisa Ostyn; Mette Burmølle; Kasper Nørskov Kragh; Thomas Bjarnsholt; Tom Coenye; Aurélie Crabbé. "Antibiotic susceptibility of cystic fibrosis lung microbiome members in a multispecies biofilm". Biofilm 2 (2020): 100031-100031. https://doi.org/10.1016/j.bioflm.2020.100031.
    10.1016/j.bioflm.2020.100031
  20. Jasper Wille; Tom Coenye. "Biofilm dispersion: The key to biofilm eradication or opening Pandora’s box?". Biofilm 2 (2020): 100027-100027. https://doi.org/10.1016/j.bioflm.2020.100027.
    10.1016/j.bioflm.2020.100027
  21. Ian Vandenbussche; Andrea Sass; Marta Pinto-Carbó; Olga Mannweiler; Leo Eberl; Tom Coenye; Craig D. Ellermeier. "DNA Methylation Epigenetically Regulates Gene Expression in Burkholderia cenocepacia and Controls Biofilm Formation, Cell Aggregation, and Motility". mSphere 5 4 (2020): https://doi.org/10.1128/mSphere.00455-20.
    10.1128/mSphere.00455-20
  22. Andrea M. Sass; Roy Martin Roop; Tom Coenye. "Low iron-induced small RNA BrrF regulates central metabolism and oxidative stress responses in Burkholderia cenocepacia". PLOS ONE (2020): https://doi.org/10.1371/journal.pone.0236405.
    10.1371/journal.pone.0236405
  23. Amir Arastehfar; Farnaz Daneshnia; Suleyha Hilmioglu-Polat; Wenjie Fang; Melike Yasar; Furkan Polat; Dilek Yesim Metin; et al. "First Report of Candidemia Clonal Outbreak Caused by Emerging Fluconazole-Resistant Candida parapsilosis Isolates Harboring Y132F and/or Y132F+K143R in Turkey". Antimicrobial Agents and Chemotherapy (2020): https://doi.org/10.1128/AAC.01001-20.
    10.1128/AAC.01001-20
  24. Andrea Sass; Tom Coenye; David A. Baltrus. "Complete Genome Sequence of Pseudomonas aeruginosa Strain AA2 (LMG 27630), an Early Isolate Recovered from the Airway of a German Cystic Fibrosis Patient". Microbiology Resource Announcements (2020): https://doi.org/10.1128/MRA.00526-20.
    10.1128/MRA.00526-20
  25. Renae L. Cruz; Kyle L. Asfahl; Sara Van den Bossche; Tom Coenye; Aurélie Crabbé; Ajai A. Dandekar; Stephen Carlyle Winans. "RhlR-Regulated Acyl-Homoserine Lactone Quorum Sensing in a Cystic Fibrosis Isolate of Pseudomonas aeruginosa". mBio (2020): https://doi.org/10.1128/mBio.00532-20.
    10.1128/mBio.00532-20
  26. Catherine R. Armbruster; Tom Coenye; Lhousseine Touqui; Jennifer M. Bomberger. "Interplay between host-microbe and microbe-microbe interactions in cystic fibrosis". Journal of Cystic Fibrosis (2020): https://doi.org/10.1016/j.jcf.2019.10.015.
    10.1016/j.jcf.2019.10.015
  27. Costabile, Gabriella; Provenzano, Romina; Azzalin, Alberto; Scoffone, Viola Camilla; Chiarelli, Laurent R; Rondelli, Valeria; Grillo, Isabelle; et al. "PEGylated mucus-penetrating nanocrystals for lung delivery of a new FtsZ inhibitor against Burkholderia cenocepacia infection". NANOMEDICINE-NANOTECHNOLOGY BIOLOGY AND MEDICINE 23 (2020): 12-12. https://biblio.ugent.be/publication/8643507.
    10.1016/j.nano.2019.102113
  28. Thukkaram, Monica; Cools, Pieter; Nikiforov, Anton; Rigole, Petra; Tom Coenye; Pascal Van Der Voort; Gijs Du Laing; et al. "Antibacterial activity of a porous silver doped TiO2 coating on titanium substrates synthesized by plasma electrolytic oxidation". APPLIED SURFACE SCIENCE 500 (2020): 11-11. https://biblio.ugent.be/publication/8631442.
    10.1016/j.apsusc.2019.144235
  29. Allkja, Jontana; Bjarnsholt, Thomas; Tom Coenye; Cos, Paul; Fallarero, Adyary; Harrison, Joe J; Lopes, Susana P; et al. "Minimum information guideline for spectrophotometric and fluorometric methods to assess biofilm formation in microplates". BIOFILM 2 (2020): 8-8. https://biblio.ugent.be/publication/8643503.
    10.1016/j.bioflm.2019.100010
  30. Eva Vandeplassche; Andrea Sass; Astrid Lemarcq; Ajai A. Dandekar; Tom Coenye; Aurélie Crabbé. "In vitro evolution of Pseudomonas aeruginosa AA2 biofilms in the presence of cystic fibrosis lung microbiome members". Scientific Reports (2019): https://doi.org/10.1038/s41598-019-49371-y.
    10.1038/s41598-019-49371-y
  31. Andrea M. Sass; Stijn De Waele; Simon Daled; Bart Devreese; Dieter Deforce; Filip Van Nieuwerburgh; Tom Coenye. "Small RNA NcS27 co-regulates utilization of carbon sources in Burkholderia cenocepacia J2315". Microbiology 165 10 (2019): 1135-1150. https://doi.org/10.1099/mic.0.000848.
    10.1099/mic.0.000848
  32. Heleen Van Acker; Aurelie Crabbe; Jurenas, Dukas; Ostyn, Lisa; Andrea Sass; Simon Daled; Maarten Dhaenens; et al. "The role of small proteins in Burkholderia cenocepacia J2315 biofilm formation, persistence and intracellular growth". BIOFILM 1 (2019): 12-12. https://biblio.ugent.be/publication/8643498.
    10.1016/j.bioflm.2019.100001
  33. Blasco, Lucia; Ambroa, Anton; Lopez, Maria; Fernandez-Garcia, Laura; Bleriot, Ines; Trastoy, Rocio; Ramos-Vivas, Jose; et al. "Combined use of the Ab105-2f¿CI lytic mutant phage and different antibiotics in clinical isolates of multi-resistant Acinetobacter baumannii". MICROORGANISMS 7 11 (2019): 14-14. https://biblio.ugent.be/publication/8643486.
    10.3390/microorganisms7110556
  34. Teirlinck, Eline; Fraire, Juan; Heleen Van Acker; Jasper Wille; rosalie swimberghe; Brans, Toon; Xiong, Ranhua; et al. "Laser-induced vapor nanobubbles improve diffusion in biofilms of antimicrobial agents for wound care". BIOFILM 1 (2019): 8-8. https://biblio.ugent.be/publication/8643490.
    10.1016/j.bioflm.2019.100004
  35. Timothy Douglas; Lopez-Heredia, Marco; Pulczynska, Aleksandra; Lapa, Agata; Pietryga, Krzysztof; David Schaubroeck; Santos, Sonia; et al. "Phenolic plant extract enrichment of enzymatically mineralized hydrogels". ENGINEERING OF BIOMATERIALS = INZYNIERIA BIOMATERIALÓW 149 (2019): 2-9. https://biblio.ugent.be/publication/8643468.
  36. Eline Teirlinck; Ranhua Xiong; Toon Brans; Katrien Forier; Juan Fraire; Heleen Van Acker; Nele Matthijs; et al. "Laser-induced vapour nanobubbles improve drug diffusion and efficiency in bacterial biofilms". Nature Communications 9 1 (2018): https://doi.org/10.1038/s41467-018-06884-w.
    10.1038/s41467-018-06884-w
  37. Andrea Sass; Annelien Everaert; Heleen Van Acker; Freija Van den Driessche; Tom Coenye. "Targeting the Nonmevalonate Pathway in Burkholderia cenocepacia Increases Susceptibility to Certain ß-Lactam Antibiotics". Antimicrobial Agents and Chemotherapy (2018): AAC.02607-17. https://doi.org/10.1128/AAC.02607-17.
    10.1128/AAC.02607-17
  38. Karl-Jan Spittaels; Tom Coenye. "Developing an in vitro artificial sebum model to study Propionibacterium acnes biofilms". Anaerobe 49 (2018): 21-29. https://doi.org/10.1016/j.anaerobe.2017.11.002.
    10.1016/j.anaerobe.2017.11.002
  39. Sanne Kiekens; Andrea Sass; Filip Van Nieuwerburgh; Dieter Deforce; Tom Coenye; Craig D. Ellermeier. "The Small RNA ncS35 Regulates Growth in Burkholderia cenocepacia J2315". mSphere 3 1 (2018): https://doi.org/10.1128/mSphere.00579-17.
    10.1128/mSphere.00579-17
  40. Lisa Slachmuylders; Anthony M. George; Heleen Van Acker; Gilles Brackman; Andrea Sass; Filip Van Nieuwerburgh; Tom Coenye. "Elucidation of the mechanism behind the potentiating activity of baicalin against Burkholderia cenocepacia biofilms". PLOS ONE (2018): https://doi.org/10.1371/journal.pone.0190533.
    10.1371/journal.pone.0190533
  41. Andrea Sass; Sanne Kiekens; Tom Coenye. "Identification of small RNAs abundant in Burkholderia cenocepacia biofilms reveal putative regulators with a potential role in carbon and iron metabolism". Scientific Reports 7 1 (2017): https://doi.org/10.1038/s41598-017-15818-3.
    10.1038/s41598-017-15818-3
  42. Sarah Tavernier; Aurélie Crabbé; Mayram Hacioglu; Liesbeth Stuer; Silke Henry; Petra Rigole; Inne Dhondt; Tom Coenye. "Community Composition Determines Activity of Antibiotics against Multispecies Biofilms". Antimicrobial Agents and Chemotherapy 61 9 (2017): https://doi.org/10.1128/AAC.00302-17.
    10.1128/AAC.00302-17
  43. Katharina Richter; Nicky Thomas; Jolien Claeys; Jonathan McGuane; Clive A. Prestidge; Tom Coenye; Peter-John Wormald; Sarah Vreugde. "A Topical Hydrogel with Deferiprone and Gallium-Protoporphyrin Targets Bacterial Iron Metabolism and Has Antibiofilm Activity". Antimicrobial Agents and Chemotherapy 61 6 (2017): https://doi.org/10.1128/AAC.00481-17.
    10.1128/AAC.00481-17
  44. Ilse Vandecandelaere; Holger Rohde; Filip Van Nieuwerburgh; Dieter Deforce; Tom Coenye. "Metabolic activity, urease production, antibiotic resistance and virulence in dual species biofilms of Staphylococcus epidermidis and Staphylococcus aureus". PLOS ONE (2017):
    10.1371/journal.pone.0172700
  45. Freija Van den Driessche; Gilles Brackman; Rosalie Swimberghe; Petra Rigole; Tom Coenye. "Screening a repurposing library for potentiators of antibiotics against Staphylococcus aureus biofilms". International Journal of Antimicrobial Agents 49 3 (2017): 315-320. https://doi.org/10.1016%2Fj.ijantimicag.2016.11.023.
    10.1016/j.ijantimicag.2016.11.023
  46. Annelien Everaert; Tom Coenye. "Effect of ß-Lactamase inhibitors on in vitro activity of ß-Lactam antibiotics against Burkholderia cepacia complex species". Antimicrobial Resistance & Infection Control (2016):
    10.1186/s13756-016-0142-3
  47. Heleen Van Acker; Gunnar F Kaufmann; Jan Gielis; Marloes Acke; Freya Cools; Paul Cos; Tom Coenye. "The Role of Reactive Oxygen Species in Antibiotic-Induced Cell Death in Burkholderia cepacia Complex Bacteria". PLOS ONE 11 7 (2016): e0159837-e0159837. http://dx.doi.org/10.1371/journal.pone.0159837.
    10.1371/journal.pone.0159837
  48. Heleen Van Acker; Tom Coenye. "The Role of Efflux and Physiological Adaptation in Biofilm Tolerance and Resistance". Journal of Biological Chemistry 291 24 (2016): 12565-12572. https://doi.org/10.1074%2Fjbc.r115.707257.
    10.1074/jbc.R115.707257
  49. Brackman, Gilles; Al Quntar, Abed Al Aziz; Enk, Claes D.; Karalic, Izet; Nelis, Hans J.; Van Calenbergh, Serge; Srebnik, Morris; Coenye, Tom. "Synthesis and evaluation of thiazolidinedione and dioxazaborocane analogues as inhibitors of AI-2 quorum sensing in Vibrio harveyi (vol 21, pg 660, 2013)". Bioorganic & Medicinal Chemistry 21 9 (2013): 2671-2671.
    10.1016/j.bmc.2013.02.034
  50. Brackman, Gilles; Al Quntar, Abed Al Aziz; Enk, Claes D.; Karalic, Izet; Nelis, Hans J.; Van Calenbergh, Serge; Srebnik, Morris; Coenye, Tom. "Synthesis and evaluation of thiazolidinedione and dioxazaborocane analogues as inhibitors of AI-2 quorum sensing in Vibrio harveyi". Bioorganic & Medicinal Chemistry 21 3 (2013): 660-667.
    10.1016/j.bmc.2012.11.055
  51. Udine, Claudia; Brackman, Gilles; Bazzini, Silvia; Buroni, Silvia; Van Acker, Heleen; Pasca, Maria Rosalia; Riccardi, Giovanna; Coenye, Tom. "Phenotypic and Genotypic Characterisation of Burkholderia cenocepacia J2315 Mutants Affected in Homoserine Lactone and Diffusible Signal Factor-Based Quorum Sensing Systems Suggests Interplay between Both Types of Systems". Plos One 8 1 (2013):
    10.1371/journal.pone.0055112
  52. Vandenbosch, Davy; De Canck, Evelien; Dhondt, Inne; Rigole, Petra; Nelis, Hans J.; Coenye, Tom. "Genomewide screening for genes involved in biofilm formation and miconazole susceptibility in Saccharomyces cerevisiae". Fems Yeast Research 13 8 (2013): 720-730.
    10.1111/1567-1364.12071
  53. Tang, Kaihao; Zhang, Yunhui; Yu, Min; Shi, Xiaochong; Coenye, Tom; Bossier, Peter; Zhang, Xiao-Hua. "Evaluation of a new high-throughput method for identifying quorum quenching bacteria". Scientific Reports 3 (2013):
    10.1038/srep02935
  54. Brackman, Gilles; Coenye, Tom. "Comment on: Synergistic antibacterial efficacy of early combination treatment with tobramycin and quorum-sensing inhibitors against Pseudomonas aeruginosa in an intraperitoneal foreign-body infection mouse model". Journal of Antimicrobial Chemotherapy 68 9 (2013): 2176-2177.
    10.1093/jac/dkt151
  55. Van Acker, Heleen; Sass, Andrea; Bazzini, Silvia; De Roy, Karen; Udine, Claudia; Messiaen, Thomas; Riccardi, Giovanna; et al. "Biofilm-Grown Burkholderia cepacia Complex Cells Survive Antibiotic Treatment by Avoiding Production of Reactive Oxygen Species". Plos One 8 3 (2013):
    10.1371/journal.pone.0058943
  56. Brackman, G.; De Meyer, L.; Nelis, H. J.; Coenye, T.. "Biofilm inhibitory and eradicating activity of wound care products against Staphylococcus aureus and Staphylococcus epidermidis biofilms in an in vitro chronic wound model". Journal of Applied Microbiology 114 6 (2013): 1833-1842.
    10.1111/jam.12191
  57. Jose Garcia-Fernandez, Maria; Brackman, Gilles; Coenye, Tom; Concheiro, Angel; Alvarez-Lorenzo, Carmen. "Antiseptic cyclodextrin-functionalized hydrogels and gauzes for loading and delivery of benzalkonium chloride". Biofouling 29 3 (2013): 261-271.
    10.1080/08927014.2013.765947
  58. Forier, Katrien; Messiaen, Anne-Sophie; Raemdonck, Koen; Deschout, Hendrik; Rejman, Joanna; De Baets, Frans; Nelis, Hans; et al. "Transport of nanoparticles in cystic fibrosis sputum and bacterial biofilms by single-particle tracking microscopy". Nanomedicine 8 6 (2013): 935-949.
    10.2217/NNM.12.129
  59. Messiaen, Anne-Sophie; Forier, Katrien; Nelis, Hans; Braeckmans, Kevin; Coenye, Tom. "Transport of Nanoparticles and Tobramycin-loaded Liposomes in Burkholderia cepacia Complex Biofilms". Plos One 8 11 (2013):
    10.1371/journal.pone.0079220
  60. Vandecandelaere, Ilse; Matthijs, Nele; Nelis, Hans J.; Depuydt, Pieter; Coenye, Tom. "The presence of antibiotic-resistant nosocomial pathogens in endotracheal tube biofilms and corresponding surveillance cultures". Pathogens and Disease 69 2 (2013): 142-148.
    10.1111/2049-632X.12100
  61. Bink, Anna; Govaert, Gilmer; Vandenbosch, Davy; Kucharikova, Sona; Coenye, Tom; Nelis, Hans; Van Dijck, Patrick; Cammue, Bruno P. A.; Thevissen, Karin. "Transcription factor Efg1 contributes to the tolerance of Candida albicans biofilms against antifungal agents in vitro and in vivo". Journal of Medical Microbiology 61 6 (2012): 813-819.
    10.1099/jmm.0.041020-0
  62. Thevissen, Karin; Tavares, Patricia de Mello; Xu, Deming; Blankenship, Jill; Vandenbosch, Davy; Idkowiak-Baldys, Jolanta; Govaert, Gilmer; et al. "The plant defensin RsAFP2 induces cell wall stress, septin mislocalization and accumulation of ceramides in Candida albicans". Molecular Microbiology 84 1 (2012): 166-180.
    10.1111/j.1365-2958.2012.08017.x
  63. Brackman, Gilles; Risseeuw, Martijn; Celen, Shari; Cos, Paul; Maes, Louis; Nelis, Hans J.; Van Calenbergh, Serge; Coenye, Tom. "Synthesis and evaluation of the quorum sensing inhibitory effect of substituted triazolyldihydrofuranones". Bioorganic & Medicinal Chemistry 20 15 (2012): 4737-4743.
    10.1016/j.bmc.2012.06.009
  64. Van Waeyenberghe, L.; Fischer, D.; Coenye, T.; Ducatelle, R.; Haesebrouck, F.; Pasmans, F.; Lierz, M.; Martel, A.. "Susceptibility of adult pigeons and hybrid falcons to experimental aspergillosis". Avian Pathology 41 6 (2012): 563-567.
    10.1080/03079457.2012.733930
  65. Vandenbosch, Davy; Bink, Anna; Govaert, Gilmer; Cammue, Bruno P. A.; Nelis, Hans J.; Thevissen, Karin; Coenye, Tom. "Phytosphingosine-1-Phosphate Is a Signaling Molecule Involved in Miconazole Resistance in Sessile Candida albicans Cells". Antimicrobial Agents and Chemotherapy 56 5 (2012): 2290-2294.
    10.1128/AAC.05106-11
  66. Meire, Maarten A.; Coenye, Tom; Nelis, Hans J.; De Moor, Roeland J. G.. "In vitro inactivation of endodontic pathogens with Nd:YAG and Er:YAG lasers". Lasers in Medical Science 27 4 (2012): 695-701.
    10.1007/s10103-011-0940-z
  67. Meire, M. A.; Coenye, T.; Nelis, H. J.; De Moor, R. J. G.. "Evaluation of Nd:YAG and Er:YAG irradiation, antibacterial photodynamic therapy and sodium hypochlorite treatment on Enterococcus faecalis biofilms". International Endodontic Journal 45 5 (2012): 482-491.
    10.1111/j.1365-2591.2011.02000.x
  68. Coenye, Tom; Brackman, Gilles; Rigole, Petra; De Witte, Evy; Honraet, Kris; Rossel, Bart; Nelis, Hans J.. "Eradication of Propionibacterium acnes biofilms by plant extracts and putative identification of icariin, resveratrol and salidroside as active compounds". Phytomedicine 19 5 (2012): 409-412.
    10.1016/j.phymed.2011.10.005
  69. Huang, Chaobo; Soenen, Stefaan J.; van Gulck, Ellen; Vanham, Guido; Rejman, Joanna; Van Calenbergh, Serge; Vervaet, Chris; et al. "Electrospun cellulose acetate phthalate fibers for semen induced anti-HIV vaginal drug delivery". Biomaterials 33 3 (2012): 962-969.
    10.1016/j.biomaterials.2011.10.004
  70. Vandecandelaere, Ilse; Matthijs, Nele; Van Nieuwerburgh, Filip; Deforce, Dieter; Vosters, Peter; De Bus, Liesbet; Nelis, Hans J.; Depuydt, Pieter; Coenye, Tom. "Assessment of Microbial Diversity in Biofilms Recovered from Endotracheal Tubes Using Culture Dependent and Independent Approaches". Plos One 7 6 (2012):
    10.1371/journal.pone.0038401
  71. Defoirdt, Tom; Benneche, Tore; Brackman, Gilles; Coenye, Tom; Sorgeloos, Patrick; Scheie, Anne Aamdal. "A Quorum Sensing-Disrupting Brominated Thiophenone with a Promising Therapeutic Potential to Treat Luminescent Vibriosis". Plos One 7 7 (2012):
    10.1371/journal.pone.0041788
  72. Bink, Anna; Vandenbosch, Davy; Coenye, Tom; Nelis, Hans; Cammue, Bruno P. A.; Thevissen, Karin. "Superoxide Dismutases Are Involved in Candida albicans Biofilm Persistence against Miconazole". Antimicrobial Agents and Chemotherapy 55 9 (2011): 4033-4037.
    10.1128/AAC.00280-11
  73. Brackman, Gilles; Celen, Shari; Hillaert, Ulrik; Van Calenbergh, Serge; Cos, Paul; Maes, Louis; Nelis, Hans J.; Coenye, Tom. "Structure-Activity Relationship of Cinnamaldehyde Analogs as Inhibitors of AI-2 Based Quorum Sensing and Their Effect on Virulence of Vibrio spp". Plos One 6 1 (2011):
    10.1371/journal.pone.0016084
  74. Messiaen, Anne-Sophie; Verbrugghen, Thomas; Declerck, Charlotte; Ortmann, Regina; Schlitzer, Martin; Nelis, Hans; Van Calenbergh, Serge; Coenye, Tom. "Resistance of the Burkholderia cepacia complex to fosmidomycin and fosmidomycin derivatives". International Journal of Antimicrobial Agents 38 3 (2011): 261-264.
    10.1016/j.ijantimicag.2011.04.020
  75. Brackman, Gilles; Cos, Paul; Maes, Louis; Nelis, Hans J.; Coenye, Tom. "Quorum Sensing Inhibitors Increase the Susceptibility of Bacterial Biofilms to Antibiotics In Vitro and In Vivo". Antimicrobial Agents and Chemotherapy 55 6 (2011): 2655-2661.
    10.1128/AAC.00045-11
  76. Coenye, T.; Nelis, H. J.. "Quality control of Saccharomyces boulardii - a response to the Letter of Honraet and Delcour (2011)". Journal of Applied Microbiology 111 5 (2011): 1296-1296.
    10.1111/j.1365-2672.2011.05150.x
  77. Coenye, Tom; Van Acker, Heleen; Peeters, Elke; Sass, Andrea; Buroni, Silvia; Riccardi, Giovanna; Mahenthiralingam, Eshwar. "Molecular Mechanisms of Chlorhexidine Tolerance in Burkholderia cenocepacia Biofilms". Antimicrobial Agents and Chemotherapy 55 5 (2011): 1912-1919.
    10.1128/AAC.01571-10
  78. Christiaen, Steven E. A.; Brackman, Gilles; Nelis, Hans J.; Coenye, Tom. "Isolation and identification of quorum quenching bacteria from environmental samples". Journal of Microbiological Methods 87 2 (2011): 213-219.
    10.1016/j.mimet.2011.08.002
  79. Contreras-Garcia, Angel; Bucio, Emilio; Brackman, Gilles; Coenye, Tom; Concheiro, Angel; Alvarez-Lorenzo, Carmen. "Biofilm inhibition and drug-eluting properties of novel DMAEMA-modified polyethylene and silicone rubber surfaces". Biofouling 27 2 (2011): 123-135.
    10.1080/08927014.2010.548115
  80. Diaz-Rodriguez, P.; Landin, M.; Rey-Rico, A.; Couceiro, J.; Coenye, T.; Gonzalez, P.; Serra, J.; Lopez-Alvarez, M.; Leon, B.. "Bio-inspired porous SiC ceramics loaded with vancomycin for preventing MRSA infections". Journal of Materials Science-Materials in Medicine 22 2 (2011): 339-347.
    10.1007/s10856-010-4196-0
  81. Vanhee, Lies M. E.; Nelis, Hans J.; Coenye, Tom. "What can be learned from genotyping of fungi?". Medical Mycology 48 (2010): S60-S69.
    10.3109/13693786.2010.484816
  82. De Prijck, Kristof; De Smet, Nele; Honraet, Kris; Christiaen, Steven; Coenye, Tom; Schacht, Etienne; Nelis, Hans J.. "Inhibition of Candida albicans Biofilm Formation by Antimycotics Released from Modified Polydimethyl Siloxane". Mycopathologia 169 3 (2010): 167-174.
    10.1007/s11046-009-9242-4
  83. Coenye, Tom; Nelis, Hans J.. "In vitro and in vivo model systems to study microbial biofilm formation". Journal of Microbiological Methods 83 2 (2010): 89-105.
    10.1016/j.mimet.2010.08.018
  84. Van Acker, Heleen; Van Snick, Elisabeth; Nelis, Hans J.; Coenye, Tom. "In vitro activity of temocillin against planktonic and sessile Burkholderia cepacia complex bacteria". Journal of Cystic Fibrosis 9 6 (2010): 450-454.
    10.1016/j.jcf.2010.08.015
  85. Vandenbosch, Davy; Braeckmans, Kevin; Nelis, Hans J.; Coenye, Tom. "Fungicidal activity of miconazole against Candida spp. biofilms". Journal of Antimicrobial Chemotherapy 65 4 (2010): 694-700.
    10.1093/jac/dkq019
  86. Rosa dos Santos, Jose-Fernando; Torres-Labandeira, Juan-Jose; Matthijs, Nele; Coenye, Tom; Concheiro, Angel; Alvarez-Lorenzo, Carmen. "Functionalization of acrylic hydrogels with alpha-, beta- or gamma-cyclodextrin modulates protein adsorption and antifungal delivery". Acta Biomaterialia 6 10 (2010): 3919-3926.
    10.1016/j.actbio.2010.04.013
  87. Vanhee, Lies M. E.; D'Haese, Eva; Cools, Ils; Nelis, Hans J.; Coenye, Tom; Magni, MV. "Detection and Quantification of Bacteria and Fungi Using Solid-Phase Cytometry". Detection of Bacteria, Viruses, Parasites and Fungi: Bioterrorism Prevention (2010): 25-41.
    10.1007/978-90-481-8544-3_2
  88. Nava-Ortiz, Cesar A. B.; Burillo, Guillermina; Concheiro, Angel; Bucio, Emilio; Matthijs, Nele; Nelis, Hans; Coenye, Tom; Alvarez-Lorenzo, Carmen. "Cyclodextrin-functionalized biomaterials loaded with miconazole prevent Candida albicans biofilm formation in vitro". Acta Biomaterialia 6 4 (2010): 1398-1404.
    10.1016/j.actbio.2009.10.039
  89. De Prijck, Kristof; De Smet, Nele; Rymarczyk-Machal, Monika; Van Driessche, Gonzalez; Devreese, Bart; Coenye, Tom; Schacht, Etienne; Nelis, Hans J.. "Candida albicans biofilm formation on peptide functionalized polydimethylsiloxane". Biofouling 26 3 (2010): 269-275.
    10.1080/08927010903501908
  90. Ravelingien, Matthieu; Mullens, Steven; Luyten, Jan; D'Hondt, Matthias; Boonen, Jente; De Spiegeleer, Bart; Coenye, Tom; Vervaet, Chris; Remon, Jean Paul. "Vancomycin release from poly(D,L-lactic acid) spray-coated hydroxyapatite fibers". European Journal of Pharmaceutics and Biopharmaceutics 76 3 (2010): 366-370.
    10.1016/j.ejpb.2010.08.010
  91. Forier, Katrien; Messiaen, Anne-Sophie; Coenye, Tom; Nelis, Hans; Celen, Shari; Van Calenbergh, Serge; De Smedt, Stefaan; Demeester, Jo; Braeckmans, Kevin. "Transport and delivery of antimicrobial agents in Burkholderia biofilms". Journal of Controlled Release 148 1 (2010): E35-E36.
    10.1016/j.jconrel.2010.07.044
  92. Nailis, Heleen; Vandenbosch, Davy; Deforce, Dieter; Nelis, Hans J.; Coenye, Tom. "Transcriptional response to fluconazole and amphotericin B in Candida albicans biofilms". Research in Microbiology 161 4 (2010): 284-292.
    10.1016/j.resmic.2010.02.004
  93. Peeters, Elke; Sass, Andrea; Mahenthiralingam, Eshwar; Nelis, Hans; Coenye, Tom. "Transcriptional response of Burkholderia cenocepacia J2315 sessile cells to treatments with high doses of hydrogen peroxide and sodium hypochlorite". Bmc Genomics 11 (2010):
    10.1186/1471-2164-11-90
  94. Theunissen, Sofie; De Smet, Lina; Dansercoer, Ann; Motte, Bart; Coenye, Tom; Van Beeumen, Jozef J.; Devreese, Bart; Savvides, Savvas N.; Vergauwen, Bjorn. "The 285 kDa Bap/RTX hybrid cell surface protein (SO4317) of Shewanella oneidensis MR-1 is a key mediator of biofilm formation". Research in Microbiology 161 2 (2010): 144-152.
    10.1016/j.resmic.2009.12.002
  95. Coenye, Tom. "Social interactions in the Burkholderia cepacia complex: biofilms and quorum sensing". Future Microbiology 5 7 (2010): 1087-1099.
    10.2217/fmb.10.68
  96. Jimenez, Pol Nadal; Koch, Gudrun; Papaioannou, Evelina; Wahjudi, Mariana; Krzeslak, Joanna; Coenye, Tom; Cool, Robbert H.; Quax, Wim J.. "Role of PvdQ in Pseudomonas aeruginosa virulence under iron-limiting conditions". Microbiology-Sgm 156 (2010): 49-59.
    10.1099/mic.0.030973-0
  97. Coenye, Tom. "Response of sessile cells to stress: from changes in gene expression to phenotypic adaptation". Fems Immunology and Medical Microbiology 59 3 (2010): 239-252.
    10.1111/j.1574-695X.2010.00682.x
  98. Nailis, Heleen; Kucharikova, Sona; Ricicova, Marketa; Van Dijck, Patrick; Deforce, Dieter; Nelis, Hans; Coenye, Tom. "Real-time PCR expression profiling of genes encoding potential virulence factors in Candida albicans biofilms: identification of model-dependent and -independent gene expression". Bmc Microbiology 10 (2010):
    10.1186/1471-2180-10-114
  99. Vanhee, Lies M. E.; Perman, Dana; Nelis, Hans J.; Coenye, Tom. "Rapid quantification of itraconazole-resistant Aspergillus fumigatus in air". Journal of Microbiological Methods 81 2 (2010): 197-199.
    10.1016/j.mimet.2010.02.012
  100. Vanhee, Lies M. E.; Meersseman, Wouter; Lagrou, Katrien; Maertens, Johan; Nelis, Hans J.; Coenye, Tom. "Rapid and Direct Quantification of Viable Candida Species in Whole Blood by Use of Immunomagnetic Separation and Solid-Phase Cytometry". Journal of Clinical Microbiology 48 4 (2010): 1126-1131.
    10.1128/JCM.00035-10
  101. Vanhee, L. M. E.; Goeme, F.; Nelis, H. J.; Coenye, T.. "Quality control of fifteen probiotic products containing Saccharomyces boulardii". Journal of Applied Microbiology 109 5 (2010): 1745-1752.
    10.1111/j.1365-2672.2010.04805.x
  102. De Prijck, Kristof; De Smet, Nele; Coenye, Tom; Schacht, Etienne; Nelis, Hans J.. "Prevention of Candida albicans Biofilm Formation by Covalently Bound Dimethylaminoethylmethacrylate and Polyethylenimine". Mycopathologia 170 4 (2010): 213-221.
    10.1007/s11046-010-9316-3
  103. Brackman, Gilles; Hillaert, Ulrik; Van Calenbergh, Serge; Nelis, Hans J.; Coenye, Tom. "Use of quorum sensing inhibitors to interfere with biofilm formation and development in Burkholderia multivorans and Burkholderia cenocepacia". Research in Microbiology 160 2 (2009): 144-151.
    10.1016/j.resmic.2008.12.003
  104. Peeters, Elke; Nelis, Hans J.; Coenye, Tom. "Resistance of planktonic and biofilm-grown Burkholderia cepacia complex isolates to the transition metal gallium-025EFauthors' response". Journal of Antimicrobial Chemotherapy 63 5 (2009): 1079-1079.
    10.1093/jac/dkp110
  105. Vanhee, Lies M. E.; Nelis, Hans J.; Coenye, Tom. "Rapid Detection and Quantification of Aspergillus fumigatus in Environmental Air Samples Using Solid-Phase Cytometry". Environmental Science & Technology 43 9 (2009): 3233-3239.
    10.1021/es803435a
  106. Nailis, Heleen; Vandenbroucke, Roosmarijn; Tilleman, Kelly; Deforce, Dieter; Nelis, Hans; Coenye, Tom. "Monitoring ALS1 and ALS3 Gene Expression During In Vitro Candida albicans Biofilm Formation Under Continuous Flow Conditions". Mycopathologia 167 1 (2009): 9-17.
    10.1007/s11046-008-9148-6
  107. Francois, Isabelle E. J. A.; Bink, Anna; Vandercappellen, Jo; Ayscough, Kathryn R.; Toulmay, Alexandre; Schneiter, Roger; van Gyseghem, Elke; et al. "Membrane Rafts Are Involved in Intracellular Miconazole Accumulation in Yeast Cells". Journal of Biological Chemistry 284 47 (2009): 32680-32685.
    10.1074/jbc.M109.014571
  108. Peeters, Elke; Nelis, Hans J.; Coenye, Tom. "In vitro activity of ceftazidime, ciprofloxacin, meropenem, minocycline, tobramycin and trimethoprim/sulfamethoxazole against planktonic and sessile Burkholderia cepacia complex bacteria". Journal of Antimicrobial Chemotherapy 64 4 (2009): 801-809.
    10.1093/jac/dkp253
  109. Meire, M. A.; De Prijck, K.; Coenye, T.; Nelis, H. J.; De Moor, R. J. G.. "Effectiveness of different laser systems to kill Enterococcus faecalis in aqueous suspension and in an infected tooth model". International Endodontic Journal 42 4 (2009): 351-359.
    10.1111/j.1365-2591.2008.01532.x
  110. Vanhee, Lies M. E.; Nelis, Hans J.; Coenye, Tom. "Detection and quantification of viable airborne bacteria and fungi using solid-phase cytometry". Nature Protocols 4 2 (2009): 224-231.
    10.1038/nprot.2008.228
  111. Vanhee, L. M. E.; Symoens, F.; Jacobsen, M. D.; Nelis, H. J.; Coenye, T.. "Comparison of multiple typing methods for Aspergillus fumigatus". Clinical Microbiology and Infection 15 7 (2009): 643-650.
    10.1111/j.1469-0691.2009.02844.x
  112. Houf, Kurt; On, Stephen L. W.; Coenye, Tom; Debruyne, Lies; De Smet, Sarah; Vandamme, Peter. "Arcobacter thereius sp nov., isolated from pigs and ducks". International Journal of Systematic and Evolutionary Microbiology 59 (2009): 2599-2604.
    10.1099/ijs.0.006650-0
  113. Brackman, Gilles; Celen, Shari; Baruah, Kartik; Bossier, Peter; Van Calenbergh, Serge; Nelis, Hans J.; Coenye, Tom. "Al-2 quorum-sensing inhibitors affect the starvation response and reduce virulence in several Vibrio species, most likely by interfering with LuxPQ". Microbiology-Sgm 155 (2009): 4114-4122.
    10.1099/mic.0.032474-0
  114. Vanhee, Lies M. E.; Nelis, Hans J.; Coenye, Tom. "Enumeration of airborne bacteria and fungi using solid phase cytometry". Journal of Microbiological Methods 72 1 (2008): 12-19.
    10.1016/j.mimet.2007.10.004
  115. Compant, Stephane; Nowak, Jerzy; Coenye, Tom; Clement, Christophe; Barka, Essaid Ait. "Diversity and occurrence of Burkholderia spp. in the natural environment". Fems Microbiology Reviews 32 4 (2008): 607-626.
    10.1111/j.1574-6976.2008.00113.x
  116. Peeters, Elke; Nelis, Hans J.; Coenye, Tom. "Comparison of multiple methods for quantification of microbial biofilms grown in microtiter plates". Journal of Microbiological Methods 72 2 (2008): 157-165.
    10.1016/j.mimet.2007.11.010
  117. Brackman, Gilles; Defoirdt, Tom; Miyamoto, Carol; Bossier, Peter; Van Calenbergh, Serge; Nelis, Hans; Coenye, Tom. "Cinnamaldehyde and cinnamaldehyde derivatives reduce virulence in Vibrio spp. by decreasing the DNA-binding activity of the quorum sensing response regulator LuxR". Bmc Microbiology 8 (2008):
    10.1186/1471-2180-8-149
  118. Coenye, T.; De Prijck, K.; De Wever, B.; Nelis, H. J.. "Use of the modified Robbins device to study the in vitro biofilm removal efficacy of NitrAdine (TM), a novel disinfecting formula for the maintenance of oral medical devices". Journal of Applied Microbiology 105 3 (2008): 733-740.
    10.1111/j.1365-2672.2008.03784.x
  119. Peeters, Elke; Nelis, Hans J.; Coenye, Tom. "Resistance of planktonic and biofilm-grown Burkholderia cepacia complex isolates to the transition metal gallium". Journal of Antimicrobial Chemotherapy 61 5 (2008): 1062-1065.
    10.1093/jac/dkn072
  120. Ruiz, Juan-Carlos; Alvarez-Lorenzo, Carmen; Taboada, Pablo; Burillo, Guillermina; Bucio, Emilio; De Prijck, Kristof; Nelis, Hans J.; Coenye, Tom; Concheiro, Angel. "Polypropylene grafted with smart polymers (PNIPAAm/PAAc) for loading and controlled release of vancomycin". European Journal of Pharmaceutics and Biopharmaceutics 70 2 (2008): 467-477.
    10.1016/j.ejpb.2008.05.020
  121. Huvenne, Wouter; Zhang, Nan; Tijsma, Edze; Hissong, Britt; Huurdeman, Judtih; Holtappels, Gabriele; Claeys, Sofie; et al. "Pilot study using doxycycline-releasing stents to ameliorate postoperative healing quality after sinus surgery". Wound Repair and Regeneration 16 6 (2008): 757-767.
    10.1111/j.1524-475X.2008.00429.x
  122. Vanhee, Lies M. E.; Symoens, Francoise; Nelis, Hans J.; Coenye, Tom. "Microsatellite typing of Aspergillus fumigatus isolates recovered from deep organ samples of patients with invasive aspergillosis". Diagnostic Microbiology and Infectious Disease 62 1 (2008): 96-98.
    10.1016/j.diagmicrobio.2008.04.006
  123. Vanhee, L. M. E.; Symoens, F.; Bouchara, J. -P.; Nelis, H. J.; Coenye, T.. "High-resolution genotyping of Aspergillus fumigatus isolates recovered from chronically colonised patients with cystic fibrosis". European Journal of Clinical Microbiology & Infectious Diseases 27 10 (2008): 1005-1007.
    10.1007/s10096-008-0527-1
  124. Coenye, T.; De Vos, M.; Vandenbosch, D.; Nelis, H.. "Factors influencing the trailing endpoint observed in Candida albicans susceptibility testing using the CLSI procedure". Clinical Microbiology and Infection 14 5 (2008): 495-497.
    10.1111/j.1469-0691.2008.01956.x
  125. Peeters, E.; Nelis, H. J.; Coenye, T.. "Evaluation of the efficacy of disinfection procedures against Burkholderia cenocepacia biofilms". Journal of Hospital Infection 70 4 (2008): 361-368.
    10.1016/j.jhin.2008.08.015
  126. Coenye, Tom; Honraet, Kris; Rigole, Petra; Jimenez, Pol Nadal; Nelis, Hans J.. "In vitro inhibition of Streptococcus mutans biofilm formation on hydroxyapatite by subinhibitory concentrations of anthraquinones". Antimicrobial Agents and Chemotherapy 51 4 (2007): 1541-1544.
    10.1128/AAC.00999-06
  127. Coenye, Tom; Drevinek, Pavel; Mahenthiralingam, Eshwar; Shah, Shiraz Ali; Gill, Ryan T.; Vandamme, Peter; Ussery, David W.. "Identification of putative noncoding RNA genes in the Burkholderia cenocepacia J2315 genome". Fems Microbiology Letters 276 1 (2007): 83-92.
    10.1111/j.1574-6968.2007.00916.x
  128. de Prijck, Kristof; Nelis, Hans; Coenye, Tom. "Efficacy of silver-releasing rubber for the prevention of Pseudomonas aeruginosa biofilm formation in water". Biofouling 23 6 (2007): 405-411.
    10.1080/08927010701647861
  129. Goris, Johan; Konstantinidis, Konstantinos T.; Klappenbach, Joel A.; Coenye, Tom; Vandamme, Peter; Tiedje, James M.. "DNA-DNA hybridization values and their relationship to whole-genome sequence similarities". International Journal of Systematic and Evolutionary Microbiology 57 (2007): 81-91.
    10.1099/ijs.0.64483-0
  130. Coenye, Tom; Peeters, Elke; Nelis, Hans J.. "Biofilm formation by Propionibacterium acnes is associated with increased resistance to antimicrobial agents and increased production of putative virulence factors". Research in Microbiology 158 4 (2007): 386-392.
    10.1016/j.resmic.2007.02.001
  131. de Beer, HL; Hugo, CJ; Jooste, PJ; Vancanneyt, M; Coenye, T; Vandamme, P. "Chryseobacterium piscium sp nov., isolated from fish of the South Atlantic Ocean off South Africa". International Journal of Systematic and Evolutionary Microbiology 56 (2006): 1317-1322.
    10.1099/ijs.0.64014-0
  132. Chen, Wen-Ming; James, Euan K.; Coenye, Tom; Chou, Jui-Hsing; Barrios, Edmundo; de Faria, Sergio M.; Elliott, Geoffrey N.; et al. "Burkholderia mimosarum sp nov., isolated from root nodules of Mimosa spp. from Taiwan and South America". International Journal of Systematic and Evolutionary Microbiology 56 (2006): 1847-1851.
    10.1099/ijs.0.64325-0
  133. Koort, J; Coenye, T; Vandamme, P; Bjorkroth, J. "Streptococcus parauberis associated with modified atmosphere packaged broiler meat products and air samples from a poultry meat processing plant". International Journal of Food Microbiology 106 3 (2006): 318-323.
    10.1016/j.ijfoodmicro.2005.09.008
  134. Holmes, Barry; Segers, Paul; Coenye, Tom; Vancanneyt, Marc; Vandamme, Peter. "Pannonibacter phragmitetus, described from a Hungarian soda lake in 2003, had been recognized several decades earlier from human blood cultures as Achromobacter groups B and E". International Journal of Systematic and Evolutionary Microbiology 56 (2006): 2945-2948.
    10.1099/ijs.0.64563-0
  135. Koort, J; Coenye, T; Santos, EM; Molinero, C; Jaime, I; Rovira, J; Vandamme, P; Bjorkroth, J. "Diversity of Weissella viridescens strains associated with "Morcilla de Burgos"". International Journal of Food Microbiology 109 1-2 (2006): 164-168.
    10.1016/j.ijfoodmicro.2006.01.021
  136. Nailis, Heleen; Coenye, Tom; Van Nieuwerburgh, Filip; Deforce, Dieter; Nelis, Hans J.. "Development and evaluation of different normalization strategies for gene expression studies in Candida albicans biofilms by real-time PCR". Bmc Molecular Biology 7 (2006):
    10.1186/1471-2199-7-25
  137. Vandamme, Peter; Holmes, Barry; Bercovier, Herve; Coenye, Tom. "Classification of Centers for disease control group eugonic fermenter (EF)-4a and EF-4b as Neisseria animaloris sp nov and Neisseria zoodegmatis sp nov., respectively". International Journal of Systematic and Evolutionary Microbiology 56 (2006): 1801-1805.
    10.1099/ijs.0.64142-0
  138. Coenye, T; Vandamme, P. "Displacement of epsilon-proteobacterial core genes by horizontally transferred homologous genes". Research in Microbiology 156 5-6 (2005): 738-747.
    10.1016/j.resmic.2005.01.016
  139. Payne, GW; Vandamme, P; Morgan, SH; LiPuma, JJ; Coenye, T; Weightman, AJ; Jones, TH; Mahenthiralingam, E. "Development of a recA gene-based identification approach for the the entire Burkholderia genus". Applied and Environmental Microbiology 71 7 (2005): 3917-3927.
    10.1128/AEM.71.7.3917-3927.2005
  140. de Beer, H; Hugo, CJ; Jooste, PJ; Willems, A; Vancanneyt, M; Coenye, T; Vandamme, PAR. "Chryseobacterium vrystaatense sp nov., isolated from raw chicken in a chicken-processing plant". International Journal of Systematic and Evolutionary Microbiology 55 (2005): 2149-2153.
    10.1099/ijs.0.63746-0
  141. Coenye, Tom; Vandamme, Peter. "Characterization of mononucleotide repeats in sequenced prokaryotic genomes". DNA Research 12 4 (2005): 221-233.
    10.1093/dnares/dsi009
  142. Sessitsch, A; Coenye, T; Sturz, AV; Vandamme, P; Barka, EA; Salles, JF; Van Elsas, JD; et al. "Burkholderia phytofirmans sp. nov., a novel plant-associated bacterium with plant-beneficial properties". International Journal of Systematic and Evolutionary Microbiology 55 (2005): 1187-1192.
    10.1099/ijs.0.63149-0
  143. Houf, K; On, SLW; Coenye, T; Mast, J; Van Hoof, J; Vandamme, P. "Arcobacter cibarius sp nov., isolated from broiler carcasses". International Journal of Systematic and Evolutionary Microbiology 55 (2005): 713-717.
    10.1099/ijs.0.63103-0
  144. Coenye, T; Vanlaere, E; Samyn, E; Falsen, E; Larsson, P; Vandamme, P. "Advenella incenata gen. nov., sp nov., a novel member of the Alcaligenaceae, isolated from various clinical samples". International Journal of Systematic and Evolutionary Microbiology 55 (2005): 251-256.
    10.1099/ijs.0.63267-0
  145. Vanlaere, E; Coenye, T; Samyn, E; Van den Plas, C; Govan, J; De Baets, F; De Boeck, K; Knoop, C; Vandamme, P. "A novel strategy for the isolation and identification of environmental Burkholderia cepacia complex bacteria". Fems Microbiology Letters 249 2 (2005): 303-307.
    10.1016/j.femsle.2005.06.026
  146. Coenye, T; Spilker, T; Reik, R; Vandamme, P; LiPuma, JJ. "Use of PCR analyses to define the distribution of Ralstonia species recovered from patients with cystic fibrosis". Journal of Clinical Microbiology 43 7 (2005): 3463-3466.
    10.1128/JCM.43.7.3463-3466.2005
  147. Campana, S; Taccetti, G; Ravenni, N; Favari, F; Cariani, L; Sciacca, A; Savoia, D; et al. "Transmission of Burkholderia cepacia complex: Evidence for new epidemic clones infecting cystic fibrosis patients in Italy". Journal of Clinical Microbiology 43 10 (2005): 5136-5142.
    10.1128/JCM.43.10.5136-5142.2005
  148. Coenye, T; Gevers, D; Van de Peer, Y; Vandamme, P; Swings, J. "Towards a prokaryotic genomic taxonomy". Fems Microbiology Reviews 29 2 (2005): 147-167.
    10.1016/j.femsre.2004.11.004
  149. Gevers, D; Cohan, FM; Lawrence, JG; Spratt, BG; Coenye, T; Feil, EJ; Stackebrandt, E; et al. "Re-evaluating prokaryotic species". Nature Reviews Microbiology 3 9 (2005): 733-739.
    10.1038/nrmicro1236
  150. Coenye, T; Vandamme, P. "Organisation of the S10, spc and alpha ribosomal protein gene clusters in prokaryotic genomes". Fems Microbiology Letters 242 1 (2005): 117-126.
    10.1016/j.femsle.2004.10.050
  151. Koort, J; Murros, A; Coenye, T; Eerola, S; Vandamme, P; Sukura, A; Bjorkroth, J. "Lactobacillus oligofermentans sp nov., associated with spoilage of modified-atmosphere-packaged poultry products". Applied and Environmental Microbiology 71 8 (2005): 4400-4406.
    10.1128/AEM.71.8.4400-4406.2005
  152. Coenye, T; Vandamme, P. "Use of the genomic signature in bacterial classification and identification". Systematic and Applied Microbiology 27 2 (2004): 175-185.
    10.1078/072320204322881790
  153. Vandamme, P; Coenye, T. "Taxonomy of the genus Cupriavidus: a tale of lost and found". International Journal of Systematic and Evolutionary Microbiology 54 (2004): 2285-2289.
    10.1099/ijs.0.63247-0
  154. Coenye, T; Vanlaere, E; Falsen, E; Vandamme, P. "Stenotrophomonas africana Drancourt et al. 1997 is a later synonym of Stenotrophomonas maltophilia (Hugh 1981) Palleroni and Bradbury 1993". International Journal of Systematic and Evolutionary Microbiology 54 (2004): 1235-1237.
    10.1099/ijs.0.63093-0
  155. Coenye, T; Spilker, T; Van Schoor, A; LiPuma, JJ; Vandamme, P. "Recovery of Burkholderia cenocepacia strain PHDC from cystic fibrosis patients in Europe". Thorax 59 11 (2004): 952-954.
    10.1136/thx.2003.019810
  156. Vermis, K; Coenye, T; LiPuma, JJ; Mahenthiralingam, E; Nelis, HJ; Vandamme, P. "Proposal to accommodate Burkholderia cepacia genomovar VI as Burkholderia dolosa sp nov.". International Journal of Systematic and Evolutionary Microbiology 54 (2004): 689-691.
    10.1099/ijs.0.02888-0
  157. Storms, V; Van den Vreken, N; Coenye, T; Mahenthiralingam, E; LiPuma, JJ; Gillis, M; Vandamme, P. "Polyphasic characterisation of Burkholderia cepacia-like isolates leading to the emended description of Burkholderia pyrrocinia". Systematic and Applied Microbiology 27 5 (2004): 517-526.
    10.1078/0723202041748190
  158. Spilker, T; Coenye, T; Vandamme, P; LiPuma, JJ. "PCR-Based assay for differentiation of Pseudomonas aeruginosa from other Pseudomonas species recovered from cystic fibrosis patients". Journal of Clinical Microbiology 42 5 (2004): 2074-2079.
    10.1128/JCM.42.5.2074-2079.2004
  159. Coenye, T; Vanlaere, E; LiPuma, JJ; Vandamme, P. "Identification of genomic groups in the genus Stenotrophomonas using gyrB RFLP analysis". Fems Immunology and Medical Microbiology 40 3 (2004): 181-185.
    10.1016/S0928-8244(03)00307-9
  160. Ussery, DW; Hallin, PF; Lagesen, K; Coenye, T. "Genome update: rRNAs in sequenced microbial genomes". Microbiology-Sgm 150 (2004): 1113-1115.
    10.1099/mic.0.27173-0
  161. Hallin, PF; Coenye, T; Binnewies, TT; Jarmer, H; Staerfeldt, HH; Ussery, DW. "Genome update: Correlation of bacterial genomic properties". Microbiology-Sgm 150 (2004): 3899-3903.
    10.1099/mic.0.27720-0
  162. Koort, J; Coenye, T; Vandamme, P; Sukura, A; Bjorkroth, J. "Enterococcus hermanniensis sp nov., from modified-atmosphere-packaged broiler meat and canine tonsils". International Journal of Systematic and Evolutionary Microbiology 54 (2004): 1823-1827.
    10.1099/ijs.0.63112-0
  163. Coenye, T; Henry, D; Speert, DP; Vandamme, P. "Burkholderia phenoliruptrix sp nov., to accommodate the 2,4,5-trichlorophenoxyacetic acid and halophenol-degrading strain AC1100". Systematic and Applied Microbiology 27 6 (2004): 623-627.
    10.1078/0723202042369992
  164. Coenye, T; Vandamme, P. "Bacterial whole-genome sequences: minimal information and strain availability". Microbiology-Sgm 150 (2004): 2017-2018.
    10.1099/mic.0.27307-0
  165. Coenye, T; Vandamme, P. "A genomic perspective on the relationship between the Aquificales and the epsilon-Proteobacteria". Systematic and Applied Microbiology 27 3 (2004): 313-322.
    10.1078/0723-2020-00272
  166. Coenye, T; Vandamme, P. "Simple sequence repeats and compositional bias in the bipartite Ralstonia solanacearum GM11000 genome". Bmc Genomics 4 (2003):
    10.1186/1471-2164-4-10
  167. Coenye, T; Vandamme, P; LiPuma, JJ. "Ralstonia respiraculi sp nov., isolated from the respiratory tract of cystic fibrosis patients". International Journal of Systematic and Evolutionary Microbiology 53 (2003): 1339-1342.
    10.1099/ijs.0.02440-0
  168. Coenye, T; LiPuma, JJ. "Population structure analysis of Burkholderia cepacia genomovar III: varying degrees of genetic recombination characterize major clonal complexes". Microbiology-Sgm 149 (2003): 77-88.
    10.1099/mic.0.25850-0
  169. Coenye, T; LiPuma, JJ. "Molecular epidemiology of Burkholderia species". Frontiers in Bioscience 8 (2003): E55-E67.
    10.2741/937
  170. Coenye, T; Vancanneyt, M; Cnockaert, MC; Falsen, E; Swings, J; Vandamme, P. "Kerstersia gyiorum gen. nov., sp nov., a novel Alcaligenes faecalis-like organism isolated from human clinical samples, and reclassification of Alcaligenes denitrificans Ruger and Tan 1983 as Achromobacter denitrificans comb nov.". International Journal of Systematic and Evolutionary Microbiology 53 (2003): 1825-1831.
    10.1099/ijs.0.02609-0
  171. Coenye, T; Vandamme, P. "Intragenomic heterogeneity between multiple 16S ribosomal RNA operons in sequenced bacterial genomes". Fems Microbiology Letters 228 1 (2003): 45-49.
    10.1016/S0378-1097(03)00717-1
  172. Liu, LX; Spilker, T; Coenye, T; LiPuma, JJ. "Identification by subtractive hybridization of a novel insertion element specific for two widespread Burkholderia cepacia genomovar III strains". Journal of Clinical Microbiology 41 6 (2003): 2471-2476.
    10.1128/JCM.41.6.2471-2476.2003
  173. Coenye, T; Vandamme, P. "Extracting phylogenetic information from whole-genome sequencing projects: the lactic acid bacteria as a test case". Microbiology-Sgm 149 (2003): 3507-3517.
    10.1099/mic.0.26515-0
  174. Coenye, T; Vandamme, P. "Diversity and significance of Burkholderia species occupying diverse ecological niches". Environmental Microbiology 5 9 (2003): 719-729.
    10.1046/j.1462-2920.2003.00471.x
  175. Coenye, T; Goris, J; De Vos, P; Vandamme, P; LiPuma, JJ. "Classification of Ralstonia pickettii-like isolates from the environment and clinical samples as Ralstonia insidiosa sp nov.". International Journal of Systematic and Evolutionary Microbiology 53 (2003): 1075-1080.
    10.1099/ijs.0.02555-0
  176. Vandamme, P; Holmes, B; Coenye, T; Goris, J; Mahenthiralingam, E; LiPuma, JJ; Govan, JRW. "Burkholderia cenocepacia sp nov - a new twist to an old story". Research in Microbiology 154 2 (2003): 91-96.
    10.1016/S0923-2508(03)00026-3
  177. Coenye, T; Vancanneyt, M; Falsen, E; Swings, J; Vandamme, P. "Achromobacter insolitus sp nov and Achromobacter spanius sp nov., from human clinical samples". International Journal of Systematic and Evolutionary Microbiology 53 (2003): 1819-1824.
    10.1099/ijs.0.02698-0
  178. Coenye, T; Vandamme, P; LiPuma, JJ; Govan, JRW; Mahenthiralingam, E. "Updated version of the Burkholderia cepacia complex experimental strain panel". Journal of Clinical Microbiology 41 6 (2003): 2797-2798.
    10.1128/JCM.41.6.2797-2798.2003
  179. Liu, LX; Coenye, T; Burns, JL; Whitby, PW; Stull, TL; LiPuma, JJ. "Ribosomal DNA-directed PCR for identification of Achromobacter (Alcaligenes) xylosoxidans recovered from sputum samples from cystic fibrosis patients". Journal of Clinical Microbiology 40 4 (2002): 1210-1213.
    10.1128/JCM.40.4.1210-1213.2002
  180. Coenye, T; LiPuma, JJ. "Multilocus restriction typing: A novel tool for studying global epidemiology of Burkholderia cepacia complex infection in cystic fibrosis". Journal of Infectious Diseases 185 10 (2002): 1454-1462.
    10.1086/340279
  181. Coenye, T; Spilker, T; Martin, A; LiPuma, JJ. "Comparative assessment of genotyping methods for epidemiologic study of Burkholderia cepacia genomovar III". Journal of Clinical Microbiology 40 9 (2002): 3300-3307.
    10.1128/JCM.40.9.3300-3307.2002
  182. Coenye, T; Goris, J; Spilker, T; Vandamme, P; LiPuma, JJ. "Characterization of unusual bacteria isolated from respiratory secretions of cystic fibrosis patients and description of Inquilinus limosus gen. nov., sp nov.". Journal of Clinical Microbiology 40 6 (2002): 2062-2069.
    10.1128/JCM.40.6.2062-2069.2002
  183. Ivanova, EP; Matte, GR; Matte, MH; Coenye, T; Huq, A; Colwell, RR. "Characterization of Pseudoalteromonas citrea and P-nigrifaciens isolated from different ecological habitats based on REP-PCR genomic fingerprints". Systematic and Applied Microbiology 25 2 (2002): 275-283.
    10.1078/0723-2020-00103
  184. Vandamme, P; Henry, D; Coenye, T; Nzula, S; Vancanneyt, M; LiPuma, JJ; Speert, DP; Govan, JRW; Mahenthiralingam, E. "Burkholderia anthina sp nov and Burkholderia pyrrocinia, two additional Burkholderia cepacia complex bacteria, may confound results of new molecular diagnostic tools". Fems Immunology and Medical Microbiology 33 2 (2002): 143-149.
    10.1111/j.1574-695X.2002.tb00584.x
  185. LiPuma, JJ; Spilker, T; Coenye, T; Gonzalez, CF. "An epidemic Burkholderia cepacia complex strain identified in soil". Lancet 359 9322 (2002): 2002-2003.
    10.1016/S0140-6736(02)08836-0
  186. Balandreau, J; Viallard, V; Cournoyer, B; Coenye, T; Laevens, S; Vandamme, P. "Burkholderia cepacia genomovar III is a common plant-associated bacterium". Applied and Environmental Microbiology 67 2 (2001): 982-985.
    10.1128/AEM.67.2.982-985.2001
  187. Coenye, T; Vandamme, P; Govan, JRW; Lipuma, JJ. "Taxonomy and identification of the Burkholderia cepacia complex". Journal of Clinical Microbiology 39 10 (2001): 3427-3436.
    10.1128/JCM.39.10.3427-3436.2001
  188. Henry, DA; Mahenthiralingam, E; Vandamme, P; Coenye, T; Speert, DP. "Phenotypic methods for determining genomovar status of the Burkholderia cepacia complex". Journal of Clinical Microbiology 39 3 (2001): 1073-1078.
    10.1128/JCM.39.3.1073-1078.2001
  189. Coenye, T; Liu, LX; Vandamme, P; LiPuma, JJ. "Identification of Pandoraea species by 16S ribosomal DNA-based PCR assays". Journal of Clinical Microbiology 39 12 (2001): 4452-4455.
    10.1128/JCM.39.12.4452-4455.2001
  190. Moore, JE; Coenye, T; Vandamme, P; Elborn, JS. "First report of Pandoraea norimbergensis isolated from food - potential clinical significance". Food Microbiology 18 1 (2001): 113-114.
    10.1006/fmic.2000.0375
  191. McMenamin, JD; Zaccone, TM; Coenye, T; Vandamme, P; LiPuma, JJ. "Misidentification of Burkholderia cepacia in US cystic fibrosis treatment centers - An analysis of 1,051 recent sputum isolates". Chest 117 6 (2000): 1661-1665.
    10.1378/chest.117.6.1661

Other

Other output
  1. DNA methylation epigenetically regulates gene expression in Burkholderia cenocepacia. 2020. Ian Vandenbussche; Andrea Sass; Marta Pinto-Carbó; Olga Mannweiler; Leo Eberl; Tom Coenye. https://doi.org/10.1101/2020.02.21.960518.
    10.1101/2020.02.21.960518
  2. Low iron-induced small RNA BrrF regulates central metabolism and oxidative stress responses in Burkholderia cenocepacia. 2019. Andrea Sass; Tom Coenye. https://doi.org/10.1101/850735.
    10.1101/850735
  3. Non-hierarchical, RhlR-regulated acyl-homoserine lactone quorum sensing in a cystic fibrosis isolate of Pseudomonas aeruginosa. 2019. Renae L. Cruz; Kyle L. Asfahl; Sara Van den Bossche; Tom Coenye; Aurélie Crabbé; Ajai A. Dandekar. https://doi.org/10.1101/755314.
    10.1101/755314
  4. Biofilm : introducing a new journal for the broad biofilm field. 2019. Tom Coenye; Kjellerup, Birthe Veno; Kovács, Ákos T; Goeres, Darla. https://biblio.ugent.be/publication/8643500.
    10.1016/j.bioflm.2019.100003
  5. Uncoupling virulence and biocontrol. 2019. Tom Coenye. https://biblio.ugent.be/publication/8643457.
    10.1038/s41564-019-0459-9
Activities

Event organisation

Event name
Type of event (Role) 		Institution / Organization
2015 - Current Member of the Organizing Board of Eurobiofilms meetings in 2015 (Brno), 2017 (Amsterdam), 2019 (Glasgow, UK) and 2021 (Palma de Mallorca, Spain) (2015)
Conference (Member of the Organising Committee)
2016 - 2016 Meeting “Antimicrobial resistance in biofilms and options for treatment” (5-7 October 2016, Gent, Belgium) (main organizer) (2016 - 2016)
Conference (Member of the Organising Committee)
2015 - 2015 6th Congress of European Microbiologists (FEMS2015, Maastricht, The Netherlands, 7-11 June 2015) (member of the Organizing Board and the Program Committee) (2015 - 2015)
Conference (Member of the Organising Committee)
2013 - 2013 Eurobiofilms 2013 meeting (9-12 September 2013, Gent, Belgium) (main organizer) (2013 - 2013)
Conference (Member of the Organising Committee)

Association member

Society Organization name Role
2000 - Current Member of various professional societies, including European Society for Clinical Microbiology & Infectious Diseases (ESCMID), American Society for Microbiology, Microbiology Society (UK)
2017 - 2021 Chair of the Executive Committee of the ESCMID Study Group on Biofilms
2012 - 2017 Member of the Executive Committee of the ESCMID Study Group on Biofilms
2006 - 2016 Member of the Board of the Belgian Society for Microbiology

Committee member

Activity description
Role 		Institution / Organization
2019 - Current Senior Editor of Biofilm (Elsevier)
2019 - Current Member of the International Scientific Advisory Board of the UK National Biofilm Innovation Centre (NBIC)
2019 - Current Member of Lundbeck Foundation’s Talent Panel (Denmark)
2014 - Current Academic secretary of the Faculty of Pharmaceutical Sciences
2014 - Current Chair of Department of Pharmaceutical Analysis Universiteit Gent, Belgium
2014 - Current Member of the External Supervisory Committee of “PhD Program of Excellence in Applied and Environmental Microbiology” (University of Minho/Braga and Instituto Superior Tecnico/Lissabon) (Portugal)
2013 - Current Member of the Ghent University Research Council Universiteit Gent, Belgium
2020/07/01 - 2021/01/31 Scientific Committee on Antibioresistance from the Agence Nationale de la Recherche (France)
Member
2010 - 2019 Editorial board member for BMC Genomics, J Microbiol Meth, Mycopathologia, PloS One, Frontiers Microbiol, Path Dis, and J Med Microbiol
2018 - 2018 External Reviewer for ERC Starting Grant proposals
2015 - 2016 Member of the Expert Peer Review Panel of the “Joint Programming Initiative on Antimicrobial Resistance” (JPI-AMR)
2010 - 2016 Member of four AERES/HCERES committees (France) for the evaluation of research groups
2014 - 2014 External reviewer for the Human Frontier Science Program
Distinctions

Award

2014 Laureate of the Royal Flemish Academy of Sciences and Arts
2007 Dade Behring MicroScan Young Investigator Award awarded by the American Society for Microbiology & American Academy for Microbiology
2006 Research Professor, position awarded by the Research Council of Ghent University

Other distinction

2021 Highly Cited Researcher Award (Web of Science)
2020 Highly Cited Researcher Award (Web of Science)
2019 Highly Cited Researcher Award (Web of Science)
2002 Postodoctoral Fellowship funded by a ‘Return Grant’ of the Belgian Federal Government and the Fund for Scientific Research Flanders (FWO)
2001 Postdoctoral Fellowship funded by the Caroll Haas Research Fund in Cystic Fibrosis (USA)
1996 PhD Scholarship (Flemish Government)