Identification
Personal identification
- Full name
- Estibaliz Gómez-de-Mariscal
Citation names
- Gómez-de-Mariscal, Estibaliz
- E. Gómez-de-Mariscal
Author identifiers
- Ciência ID
- C31E-48AF-F085
- ORCID iD
- 0000-0003-2082-3277
- Google Scholar ID
- gsg-TAUAAAAJ&hl
- Researcher Id
- C-4637-2018
- Scopus Author Id
- 57210992380
Email addresses
- egomez@gmail.com (Personal)
Websites
- https://henriqueslab.github.io/team/2021-10-01-EGdM/ (Professional)
- https://scholar.google.com/citations?user=gsg-TAUAAAAJ&hl (Scholar)
- https://twitter.com/gomez_mariscal (Social media)
Knowledge fields
- Exact Sciences - Computer and Information Sciences - Bioinformatics
- Exact Sciences - Mathematics
- Engineering and Technology
- Exact Sciences - Computer and Information Sciences - Computer Sciences
- Natural sciences - Biological Sciences - Biophysics
Languages
Language | Speaking | Reading | Writing | Listening | Peer-review |
---|---|---|---|---|---|
Spanish; Castilian (Mother tongue) | |||||
English | Advanced (C1) | Advanced (C1) | Advanced (C1) | Advanced (C1) | Advanced (C1) |
Basque | Advanced (C1) | Proficiency (C2) | Advanced (C1) | Proficiency (C2) | Advanced (C1) |
Portuguese | Upper intermediate (B2) | Advanced (C1) | Upper intermediate (B2) | Upper intermediate (B2) | Intermediate (B1) |
Education
Degree | Classification | |
---|---|---|
2017/09/15 - 2021/09/30
Concluded
|
Ph.D in Mathematical Engineering (Doctor of Philosophy)
Universidad Carlos III de Madrid - Campus de Leganés, Spain
"Insights to the characterization of cell motility and intercellular communication through a bioimage analysis perspective" (THESIS/DISSERTATION)
|
Merit (10/10) with Cum Laude Distinction |
2015/09/01 - 2016/09/30
Concluded
|
MSc in Statistical and Computational Data Processing (Postgraduate Certificate)
Universidad Complutense de Madrid, Spain
"Processing of IRT images taken under emotional stress situations" (THESIS/DISSERTATION)
|
Very good (8.93/10) - Ranking: 5/18 |
2009/09/01 - 2014/06/30
Concluded
|
Licenciatura en Matemáticas (Licence)
Universidad del País Vasco - Campus Bizkaia, Spain
|
Very good (7.82/10) - Ranking: 10/38 |
Affiliation
Science
Category Host institution |
Employer | |
---|---|---|
2021/10/01 - Current | Postdoc (Research) | Fundação Calouste Gulbenkian, Portugal |
Instituto Gulbenkian de Ciência, Portugal | ||
2016/10/01 - 2021/09/30 | Research Trainee (Research) | Universidad Carlos III de Madrid - Campus de Leganés, Spain |
Others
Category Host institution |
Employer | |
---|---|---|
2016/07 - 2016/09 | Biostatistician | Linical S.L., Spain |
2014/11 - 2015/09 | Financial consultant | Management Solutions, Spain |
Projects
Contract
Designation | Funders | |
---|---|---|
2022/09/01 - 2024/08/31 | A transformative data-driven live-cell super-resolution microscopy development to elucidate the initial steps of effective
viral transmission
EMBO ALTF 174-2022
Research Fellow
Instituto Gulbenkian de Ciência, Portugal
|
European Molecular Biology Laboratory
Ongoing
|
2016/10/01 - 2017/08/31 | Imaging and measuring cancer cell mechanics
TEC2013-48552-C2
Research Technician Fellow
|
España Ministerio de Ciencia e Innovación
Concluded
|
Other
Designation | Funders | |
---|---|---|
2022/09/01 - 2025/08/31 | Artificial Intelligence for Image Data Analysis in the Life Sciences (AI4Life)
Integration into Research Grant Fellow
Instituto Gulbenkian de Ciência, Portugal
EMBL Heidelberg Genome Biology, Germany Universidad Carlos III de Madrid, Spain Fondazione Human Technopole, Italy Kungliga Tekniska Högskolan, Sweden Euro-Bioimaging, Finland |
European Union
Ongoing
|
2020/06/01 - 2021/09/28 | Plataforma de imagen multi-escala para acelerar el desarrollo de fármacos contra infecciones pulmonares
PID2019-109820RB-I00
PhD Student Fellow
|
España Ministerio de Ciencia e Innovación |
2017/09/01 - 2019/11/30 | Imagen paramétrica del cerebro embrionario: Una nueva propuesta de instrumentación biomédica de altas prestaciones
TEC2016-78052-R
PhD Student Fellow
|
España Ministerio de Ciencia e Innovación |
2017/09/01 - 2018/03/31 | Descifrando la estructura y la función de las protrusiones celulares en la migración tridimensional
TEC2015-73064-EXP
PhD Student Fellow
|
España Ministerio de Ciencia e Innovación |
Outputs
Publications
Conference abstract |
|
Conference paper |
|
Conference poster |
|
Journal article |
|
Online resource |
|
Preprint |
|
Thesis / Dissertation |
|
Website |
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Other
Dataset |
|
Other output |
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Activities
Oral presentation
Presentation title | Event name Host (Event location) |
|
---|---|---|
2023/10/17 | Harnessing AI towards the limits of live microscopy imaging | Imaging Life: the future
MRI Montpellier (Montpellier, France)
|
2022/11 | Deep learning-enabled cellular imaging: making it happen for you | Crick BioImage Analysis Symposium (CBIA)
(United Kingdom)
|
2022/07/11 | FAIRy Deep Learning for Microscopy | Open Neurscience, FENS Forum
Institute Pasteur (France)
|
2022/02/16 | Open-source ecosystems for user-friendly deep learning workflows in bioimage analysis | Focal plane features Machine Learning |
2020 | Deep learning en imagen biomédica (in Spanish) | Master in Data Science Seminar
Universidad Rey Juan Carlos Madrid (Madrid, Spain)
|
Supervision
Thesis Title Role |
Degree Subject (Type) Institution / Organization |
|
---|---|---|
2023/04/01 - Current | Deep Self-Supervised Learning methods for biomedical image analysis.
Co-supervisor
|
Computational Engineering (PhD)
Universidad del País Vasco - Campus Gipuzkoa, Spain
|
2022/09/01 - 2023/01/30 | Quantitative assessment of phototoxicity during embryo development
Supervisor
|
Biomedical Engineering (Degree)
Universidade de Lisboa Instituto Superior Técnico, Portugal
Universidad Carlos III de Madrid - Campus de Leganés, Spain |
2022/01/01 - 2022/12/30 | Deep learning single image super-resolution in microscopy data: distortion error vs perceptual quality
Co-supervisor
|
Computer Engineering and Intelligent System (Master)
Universidad del País Vasco, Spain
|
2019/09/01 - 2020/06/30 | Automatic segmentation of cells in phase-contrast microscopy images
Supervisor
|
|
2017 - 2017 | Microstructure - mechanical property relation of the extracellular matrix in lung cancer
Co-supervisor
|
Event participation
Activity description Type of event |
Event name Institution / Organization |
|
---|---|---|
2021/08 - 2021/08 | Open-source ecosystems for user-friendly deep learning workflows in bioimage analysis
Seminar
|
BioImage Informatics Finland network
University of Turku, Finland
|
2021 - 2021 | Microscopy data analysis: Machine learning and the BioImage Archive
Workshop
|
EBI – EMBL course
European Bioinformatics Institute, United Kingdom
|
2020 - 2020 | WS6: Practical Applications of Deep learning for Bioimage Analysis
Workshop
|
Spanish Portuguese Meeting for Advanced Optical Microscopy (SPAOM) |
2019 - 2019 | New insights on 3D cell migration through the study of cellular protrusions
Seminar
|
Seminars on Mechanobiology
Universidad Carlos III de Madrid, Spain
Consejo Superior de Investigaciones Científicas Secretaría General Adjunta de Informática, Spain |
2018/10 - 2018/10 | WS5: Machine Learning - Deep Learning. Applications to Bioimage Analysis
Workshop
|
Spanish Portuguese Meeting for Advanced Optical Microscopy (SPAOM) |
Jury of academic degree
Topic Role |
Candidate name (Type of degree) Institution / Organization |
|
---|---|---|
2023/10/06 | A Colour Wheel to Rule them All: Analysing Colour & Geometry in Medical Microscopy.
(Thesis) Arguer
|
Laura Nicolás Sáenz (PhD)
Universidad Carlos III de Madrid, Spain
|
2022/10/28 | Democratizing Deep Learning methods by means of AutoML tools
(Thesis) Arguer
|
Manuel García Domínguez (PhD)
Universidad de la Rioja, Spain
|
2019/02/28 | Segmentación y extracción del pulmón dañado por infección causada por Micobacteria Tuberculosis en imágenes de TAC (Segmentation and removal of lung damaged by Mycobacterium tuberculosis infection on CT images) | Carmen Guzmán García (Master)
Universidad Rey Juan Carlos, Spain
|
Course / Discipline taught
Academic session | Degree Subject (Type) | Institution / Organization | |
---|---|---|---|
2020 - Current | Introduction to Deep Learning | ZIDAS - SwitZerland's Image and Data Analysis School (Summer School) | École Polytechnique Fédérale de Lausanne, Switzerland |
2022/09/08 - 2022/09/18 | DL community tools for bioimage analysis | Marine Biology Laboratory, United States | |
2022/06/10 - 2022/06/16 | BioImage analysis: from visual to quantitative biology and the other way around | Centre de recherche CERVO, Canada | |
2021/02 - 2021/06 | Medical image processing | (Bachelor) | |
2020/09/01 - 2021/01/31 | Biomedical image processing | (Master Universitario) | Universidad Carlos III de Madrid, Spain |
2021 - 2021 | User-friendly face of deep learning for bioimage analysis | ZIDAS - SwitZerland's Image and Data Analysis School (Summer School) | École Polytechnique Fédérale de Lausanne, Switzerland |
2020/02 - 2020/06 | Medical image processing | (Bachelor) | Universidad Carlos III de Madrid, Spain |
2020/02 - 2020/06 | Biomedical microdevices | (Bachelor) | Universidad Carlos III de Madrid, Spain |
2019/09/01 - 2020/01/30 | Biomedical image processing | (Master Universitario) | Universidad Carlos III de Madrid, Spain |
2019/02 - 2019/06 | Medical image processing | (Bachelor) | Universidad Carlos III de Madrid, Spain |
2019/02 - 2019/06 | Biomedical microdevices | (Bachelor) | Universidad Carlos III de Madrid, Spain |
Interview (newspaper / magazine)
Activity description | Newspaper / Forum | |
---|---|---|
2024/02/27 | Interview with Estibaliz Gómez de Mariscal for Focal Plane | Focal Plane |
Mentoring / Tutoring
Topic | Student name | |
---|---|---|
2024/01/07 - 2024/10/31 | Automatic quantification of apoptosis in zebra fish human avatars | Sebastião Taveira |
2018/06/01 - 2018/08/31 | On the creation of large microscopy image datasets for robust training of deep-learning methods | Tatiana Pereira |
Distinctions
Award
2022 | President Innovation Award |
2021 | Premio extraordinario de doctorado 2020-2021
Universidad Carlos III de Madrid, Spain
|
2018 | PhD international mobility scholarship
Universidad Carlos III de Madrid, Spain
|
2017 | Best Poster Award, Advanced Methods in Biomedical Image Analysis Summer School
Masarykova univerzita, Czech Republic
|
Other distinction
2017 | Individual 4-year scholarship for PhD tuition fees and salary
Universidad Carlos III de Madrid, Spain
|
2015 | Excellence Scholarship - Master's degree funding
Universidad Complutense de Madrid, Spain
|
2015 | Master degree scholarship from the Faculty of Mathematics
Universidad Complutense de Madrid Facultad de Ciencias Matemáticas, Spain
|