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Ana R. Freitas is an Assistant Professor of Bacteriology and Microbiology at the University Institute of Health Sciences (IUCS-CESPU) and is an integrated Researcher at the Research Unit on Applied Molecular Biosciences (UCIBIO) within the Faculty of Pharmacy at the University of Porto (FFUP). She serves on the management board of the 1H-TOXRUN (One Health Toxicology Research Unit) and holds the role of Coordinator at its Office of Communication and Public Engagement. In addition to her academic roles, Ana R. Freitas has achieved noteworthy leadership positions in prominent scientific organizations. Currently, she serves as the Chair of the Food- and Water-borne Infections Study Group for the esteemed European Society of Clinical Microbiology and Infectious Diseases (ESCMID), is a trusted scientific reviewer for ESCMID and sits on the Board of Direction of the Portuguese Society of Microbiology. Ana also contributes as an Editor for the Journal of Global Antimicrobial Resistance (Elsevier). With a dedication to Health Sciences, Infectious Diseases and One Health, Ana has been actively engaged in Antimicrobial Resistance research for over 15 years. Her productive contributions are considered relevant works that improved the knowledge of the biology and epidemiology of opportunistic pathogens of relevance in Public Health as enterococci, which are reflected in the publication of 70 articles (44 in the last 5 years) in high-impact (most Q1), international, peer-reviewed indexed journals (H-index 26 Scopus), along with >100 GenBank sequences/genomes and 4 book chapters. Demonstrating a robust international network, she has collaborated with 161 co-authors across four continents. Ana R. Freitas is frequently called upon to act as a referee for high-impact journals covering various knowledge areas related to Infectious Diseases and Microbiology (https://www.webofscience.com/wos/author/record/1330514). Her expertise has been recognized by European agencies such as the European Commission, EFSA and other international research centers where she has served as an expert or reviewer. She has co-edited 9 special issues on Antimicrobial Resistance and played a pivotal role in organizing international scientific events. In her role as an educator and mentor, Ana has supervised and co-supervised national and international students at various academic levels, including Ph.D., MSc, Erasmus, and undergraduate levels. Her success in attracting funding for research projects is evident in her participation in several proposals at both national and international levels, including as a Principal Investigator (PI). She has presented over 130 communications (oral and posters) at prestigious national and international congresses. She is a sought-after lecturer and speaker, having delivered several oral presentations and interviews in media. Her academic/scientific achievements include 2 FCT fellowships (BD and BPD), one CEEC-FCT researcher contract, 9 awards/distinctions, and 13 congress grants. Ana holds the HiTech 2019 program organized by the Porto Business School in collaboration with North Carolina State University and is doing an Artificial Intelligence for Teachers course. She is an active member of relevant Microbiology societies/groups such as ECCMID, ESGEM, EFWISG, ESGMD, ESGFOR, and SPM. Serving as the scientific ambassador of the BacTdrugs-UCIBIO research group, Ana is responsible for scientific communication within social networks of different groups/societies (SPM, BacT_drugs, EFWISG, TOXRUN). Ana R. Freitas co-coordinated the implementation of the citizen MicroMundo@UPorto project in Portugal in 2018/2019, involving university and school students. In 2022-2024, she coordinated the MicroMundo@IUCS_CESPU, showcasing her commitment to community engagement and education.
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Identification

Personal identification

Full name
Ana Raquel Pinho Freitas
Date of birth
1981/01/14

Citation names

  • Freitas, Ana R

Author identifiers

Ciência ID
CD1A-0BD1-FB98
ORCID iD
0000-0002-7326-4133
Google Scholar ID
Ana R Freitas
Researcher Id
D-6158-2013
Scopus Author Id
23972359600

Email addresses

  • anarpf@gmail.com (Professional)
  • ana.freitas@iucs.cespu.pt (Professional)

Addresses

  • UCIBIO/REQUIMTE, Faculdade de Farmácia do Porto. Rua Jorge Viterbo Ferreira nº 228 , 4050-313, Porto, Porto, Portugal (Professional)
  • Campus Universitário de Gandra: Avenida Central de Gandra, 1317 , 4585-116, Gandra, Paredes, Portugal (Professional)

Websites

Knowledge fields

  • Medical and Health Sciences - Health Sciences - Infectious Diseases
  • Medical and Health Sciences - Health Sciences - Public and Environmental Health

Languages

Language Speaking Reading Writing Listening Peer-review
English Proficiency (C2) Proficiency (C2) Proficiency (C2) Proficiency (C2) Proficiency (C2)
Spanish; Castilian Advanced (C1) Advanced (C1) Advanced (C1) Advanced (C1)
Portuguese Proficiency (C2) Proficiency (C2) Proficiency (C2) Proficiency (C2) Proficiency (C2)
Education
Degree Classification
2024/01/22 - 2024/03/03
Ongoing
 Artificial Intelligence for Teachers Course (Curso de Especialização Tecnológica)
Educa-te, Portugal
2019/02/26 - 2019/07/02
Concluded
 HiTech 2019: 4-month Program of translating cutting-edg technology and scientific discoveries into high-growth business opportunities. Project: "Quick and low-cost bacterial strain typing" (http://hiseedtech.com/programs/hitech#overview) (Curso de Especialização Tecnológica)
Major in Transfer of knowledge
HiSeedTech - Associação para a valorização do conhecimento, Portugal
2018/07/16 - 2018/07/18
Concluded
 Curso-Taller Small World Initiative/MicroMundo Partner Instructor (Curso de Especialização Tecnológica)
Major in allowing to participate as Instructor in the Tiny Earth/MicroMundo project
Universidad Complutense de Madrid, Spain
2017/03/27 - 2017/03/29
Concluded
 Introduction to Whole Genome Sequencing and Analysis for Microbial Diagnostics. Hørsholm, Denmark (Curso de Especialização Tecnológica)
Center for Genomic Epidemiology, Denmark
2006/01/02 - 2011/05/30
Concluded
 Doutoramento em Ciências Farmacêuticas - Especialidade de Microbiologia (Doutoramento)
Universidade do Porto Faculdade de Farmácia, Portugal
"Ecology and Evolution of Antimicrobial Resistance in Enterococcus: A multilayered molecular approach with emphasis in plasmid diversity" (THESIS/DISSERTATION)
 Aprovada com Distinção (Maximum Classification)
1998/10 - 2004/08
Concluded
 Ciências Farmacêuticas (Licenciatura)
Universidade do Porto Faculdade de Farmácia, Portugal
 Sixteen (16) values
Affiliation

Science

Category
Host institution 		Employer
2021/10/01 - Current Invited Coordinator Researcher (Research) Instituto Universitário de Ciências da Saúde Unidade de Investigação em Toxicologia, Portugal
Instituto Universitário de Ciências da Saúde, Portugal
2021/10/01 - Current Researcher (Research) Unidade de Ciências Biomoleculares Aplicadas, Portugal
Universidade do Porto Faculdade de Farmácia, Portugal
2018/11/01 - 2021/09/30 Contracted Researcher (Research) REQUIMTE Unidade de Ciências Biomoleculares Aplicadas, Portugal
Universidade do Porto Faculdade de Farmácia, Portugal
2018/12/02 - 2018/12/07 Visiting Researcher (Research) Statens Serum Institut, Denmark
2014/12/01 - 2018/10/31 Postdoc (Research) Fundação para a Ciência e a Tecnologia, Portugal
REQUIMTE Unidade de Ciências Biomoleculares Aplicadas, Portugal
(...)
2007/01/04 - 2010/12/24 Visiting Researcher (Research) Hospital Ramón y Cajal, Spain
2006/01/01 - 2009/12/31 Researcher (Research) Fundação para a Ciência e a Tecnologia, Portugal
Fundação para a Ciência e a Tecnologia, Portugal
(...)
2004/02/02 - 2004/06/18 Research Trainee (Research) Hospital Ramón y Cajal, Spain

Teaching in Higher Education

Category
Host institution 		Employer
2021/10/01 - Current Assistant Professor (University Teacher) Instituto Universitário de Ciências da Saúde, Portugal
2018/03/01 - 2021/09/30 Invited Assistant Professor (University Teacher) Instituto Universitário de Ciências da Saúde, Portugal

Other Careers

Category
Host institution 		Employer
2010/01/01 - 2014/10/30 Coordenador Técnico (Assistente Técnico) Farmácia do Campo, Portugal
2004/09/01 - 2005/12/30 Assistente Técnico (Assistente Técnico) Farmácia Álvaro Agante, Portugal

Others

Category
Host institution 		Employer
2012/04/17 - 2013/12/31 Collaborating Researcher REQUIMTE Unidade de Ciências Biomoleculares Aplicadas, Portugal
Projects

Grant

Designation Funders
2019/06 - Current Junior Researcher projet: Exploring bloodstream infections by Enterococcus faecium at the single-cell level
CEECIND/02268/2017
Researcher
Fundação para a Ciência e a Tecnologia
Ongoing
2014/12/02 - 2018/10/31 Pos-doc project: Identification of the risk factors promoting the emergence of Enterococcus faecium: a combined approach of conventional methods and high-throughput technology
FCT/BPD/96148/2013
Post-doc Fellow
Fundação para a Ciência e a Tecnologia
Concluded
2006/01 - 2009/12 PhD project: Study of the factors implicated in the stability and dissemination of multiresistant Enterococcus spp. in different metagenomes.
FCT/BD/24604/2005
PhD Student Fellow
Fundação para a Ciência e a Tecnologia
Concluded

Contract

Designation Funders
2024/01 - Current NARES: Nasal colonization by Staphylococcus aureus in Health Sciences students: insights into lifestyle factors, antimicrobial resistance and virulence profiles. Approved by the Ethical Committee of IUCS (23/CE-IUCS/2022).
NARES_GI2-CESPU-2023
Principal investigator
Cooperativa de Ensino Superior Politécnico e Universitário, Portugal

Universidade do Porto Faculdade de Farmácia, Portugal

REQUIMTE LAQV Porto, Portugal

Instituto Universitário de Ciências da Saúde Unidade de Investigação em Patologia Oral e Reabilitação, Portugal

Unidade de Ciências Biomoleculares Aplicadas, Portugal
Cooperativa de Ensino Superior Politécnico e Universitário
Ongoing
2024/01 - Current APPLE - Assessing Prevalence, Population structure and resistance mechanisms of Linezolid-resistant Enterococci - a multicenter study
ESCMID SG Research Grant APPLE
Co-Principal Investigator (Co-PI)
Robert Koch-Institut Aussenstelle Wernigerode, Germany

Universidade do Porto Faculdade de Farmácia, Portugal

Handelshøgskolen ved UiT, Norway

The University of Dublin Trinity College, Ireland

Università degli Studi di Milano-Bicocca, Italy

Hospital Ramón y Cajal, Spain

Hospital Universitari de Bellvitge, Spain

Hvidovre Hospital, Denmark

Ben-Gurion University of the Negev, Israel

Julius-Maximilians-Universität Würzburg Institut für Pharmazie und Lebensmittelchemie, Germany

Universitätsklinikum Hamburg-Eppendorf Klinik und Poliklinik für Interdisziplinäre Endoskopie, Germany

Ekonomska sola Murska Sobota, Slovenia

Medicinski universitet-Sofia, Bulgaria

Narodowy Instytut Leków, Poland

Unidade de Ciências Biomoleculares Aplicadas, Portugal

Centre Hospitalier Universitaire de Rennes, France

Universität Zürich, Switzerland

UiT Norges arktiske universitet, Norway
European Society of Clinical Microbiology and Infectious Diseases
Ongoing
2023/01 - Current CLEANWATER: Exploring the microbial diversity of water supply systems for early detection of emerging micropollutants
2022.02124.PTDC
Researcher
REQUIMTE Unidade de Ciências Biomoleculares Aplicadas, Portugal

Cooperativa de Ensino Superior Politécnico e Universitário, Portugal

Universidade do Porto Faculdade de Farmácia, Portugal

Universidade do Porto Faculdade de Ciências da Nutrição e Alimentação, Portugal

Águas de Douro e Paiva, Portugal
Fundação para a Ciência e a Tecnologia
2021/01/01 - 2025/12/31 Institute for Health and Bioeconomy
LA/P/0140/2020
10.54499/LA/P/0140/2020
Researcher
Associação do Instituto Superior Técnico para a Investigação e Desenvolvimento, Portugal

Universidade de Lisboa Instituto de Bioengenharia e Biociências, Portugal

Universidade NOVA de Lisboa, Portugal

INESC Microsistemas e Nanotecnologias, Portugal

Rede de Química e Tecnologia Laboratório Associado para a Química Verde, Portugal

Associação para a Inovação e Desenvolvimento da FCT, Portugal

Unidade de Ciências Biomoleculares Aplicadas, Portugal
Fundação para a Ciência e a Tecnologia
Ongoing
2020/01/01 - 2023/12/31 Applied Molecular Biosciences Unit
UIDB/04378/2020
10.54499/UIDB/04378/2020
Researcher
Universidade NOVA de Lisboa, Portugal

Unidade de Ciências Biomoleculares Aplicadas, Portugal

Rede de Química e Tecnologia Laboratório Associado para a Química Verde, Portugal

Associação para a Inovação e Desenvolvimento da FCT, Portugal

Universidade do Porto Instituto de Ciências Tecnologias e Agroambiente, Portugal

Universidade do Porto, Portugal
Fundação para a Ciência e a Tecnologia
Concluded
2020/01/01 - 2023/12/31 Applied Molecular Biosciences Unit
UIDP/04378/2020
10.54499/UIDP/04378/2020
Researcher
Universidade NOVA de Lisboa, Portugal

Unidade de Ciências Biomoleculares Aplicadas, Portugal

Rede de Química e Tecnologia Laboratório Associado para a Química Verde, Portugal

Associação para a Inovação e Desenvolvimento da FCT, Portugal

Universidade do Porto Instituto de Ciências Tecnologias e Agroambiente, Portugal

Universidade do Porto, Portugal
Fundação para a Ciência e a Tecnologia
Concluded
2022/01/01 - 2023/10/31 BENEFIT: Exploring the bacteriocinome of human Enterococcus faecium paving avenues towards multidrug-resistant infections targeted therapies
EXPL/SAU-INF/0261/2021
Principal investigator
REQUIMTE Unidade de Ciências Biomoleculares Aplicadas, Portugal

Universidade do Porto Faculdade de Farmácia, Portugal

Fundación para la Investigación Biomédica del Hospital Universitario Ramón y Cajal, Spain

Chalmers tekniska högskola - Campus Lindholmen, Sweden
Fundação para a Ciência e a Tecnologia
Concluded
2017 - 2023 EU Consortium to study international Enterococcus faecalis genomes (5 EU partners).
ERC 742158
Researcher
Concluded
2020/01/01 - 2020/12/31 IR Bactyping - A service of bacterial typing for real-time support of epidemiology and infection control
BIP PROOF 2019
Researcher
Universidade do Porto Faculdade de Farmácia, Portugal

Unidade de Ciências Biomoleculares Aplicadas, Portugal
Fundação Amadeu Dias
Concluded
2015 - 2018 New Technologies for three Health Challenges of Modern Socities: Diabetes, Drug Abuse and Kidney Diseases (DESignBIOtecHealth). NORTE-01-0145-FEDER-000024. Norte 2020 - Norte’s Regional Operational Programme.
NORTE-01-0145-FEDER-000024
Post-doc Fellow
Comissao de Coordenacao e Desenvolvimento Regional do Norte
Concluded
2015/01 - 2016/02 Identification of the risk factors promoting the emergence of Enterococcus faecium at the interphase between humans, foodborne animals and the environment. One of 15 awardees of ESCMID Research Grants funded by the European Society of Clinical Microbiology and Diseases (ESCMID)
ESCMID Research Grant
Principal investigator
European Society of Clinical Microbiology and Infectious Diseases
Concluded
2013 - 2015 Chelators for novel therapeutic strategies. Reference: NORTE-07-0124-FEDER-000066. Member of team as Collaborating Researcher.
NORTE-07-0124-FEDER-000066
Other
Comissao de Coordenacao e Desenvolvimento Regional do Norte
Concluded
2012 - 2013 Selection of antibiotic resistant bacteria: a role for mercury?
Proj. Pluridisciplinares da UP
PhD Student Fellow
Banco Santander Totta
2010 - 2013 Is aquaculture raising more than fish? Detecting antimicrobial resistance in an understudied ecological niche.
PTDC/AAC-AMB/103386/2008
PhD Student Fellow
Fundação para a Ciência e a Tecnologia
2009 - 2012 Influencia de los elementos de transferência genética horizontal en la selección y persistência del complejo clonal 17 de Enterococcus faecium: implicaciónes en la selección clonal de patogenos. FIS-PS09/02381. Instituto de Salud Carlos III, Spain. Member of team as External Consultant.
FIS-PS09/02381
Other
Hospital Ramón y Cajal, Spain
 Instituto de Salud Carlos III
Concluded
2010 - 2011 Bacterial resistance to copper and antibiotics: two sides of the same problem in animal production setting?
Proj. Pluridisciplinares da UP
PhD Student Fellow
Banco Santander Totta
2007 - 2011 Approaches to control multi-resistant enterococci: studies on molecular ecology, horizontal gene transfer, fitness and prevention (ACE). Reference: ACE-LSHE-2007-037410. Funded by EU – 6th Framework Programme. 13 EU partners. Member of team as Pos-Doc Researcher.
ACE-LSHE-2007-037410
Integration into Research Grant Fellow
European Commission Sixth Framework Programme
Concluded
2009 - 2010 Population structure of Salmonella nontyphoidal causing human infections by multilocus sequence typing.
Proj. Pluridisciplinares da UP
PhD Student Fellow
Banco Santander Totta
2005 - 2009 Indicators of swine industry pollution: antibiotics and antibiotic resistant bacteria.
POCTI/AMB/61814/2004
PhD Student Fellow
Fundação para a Ciência e a Tecnologia
Concluded

Other

Designation Funders
2022/09/01 - Current MicroMundo @ IUCS_CESPU: an educational service-learning project for education in Microbiology. Coordination of its implementation in CESPU. Co-organizer and supervisor of students.
MicroMundo@IUCS_CESPU
Supervisor
Instituto Universitário de Ciências da Saúde, Portugal
 Instituto Universitário de Ciências da Saúde
Ongoing
2018/09 - 2022/07 MicroMundo @ UPorto: an educational service-learning project for education in Microbiology. Co-coordenation of its implementation in Portugal during 2018. Co-organizer and supervisor of students since 2019. Main contact with Spanish colleagues from MicroMundo@Spain.
MicroMundo@UPorto
Supervisor
Universidade do Porto Faculdade de Farmácia, Portugal

Universidade do Porto Faculdade de Ciências da Nutrição e Alimentação, Portugal
Universidade do Porto

REQUIMTE Unidade de Ciências Biomoleculares Aplicadas
Ongoing
2004/01 - 2004/01 Projeto de divulgação da Unidade de Farmacovigilância do Norte. Volunteer promotion of the pharmacovigilance and monitoring of the safety of medicines in the metropolitan city of Porto. Audience: professionals in different pharmacies.
Volunteer
Technical development
Infarmed Autoridade Nacional do Medicamento e Produtos de Saúde IP
Concluded
Outputs

Publications

Book chapter
  1. Freitas, Ana R; Novais, Carla; Antunes, Patrícia. "Bacteriotoxinas". In Toxicologia Alimentar, edited by Ricardo J. Dinis-Oliveira; Félix Carvalho; Nuno G. Oliveira. Portugal: Lidel, 2024.
    In press
  2. Freitas, A.R. (corresponding); Novais, C.; Peixe, L.; Coque, T.M. (corresponding). "Isolation and Visualization of Plasmids from Gram-Positive Bacteria of Interest in Public Health". In Methods in Molecular Biology, 21-38. Springer US, 2020.
    Published • 10.1007/978-1-4939-9877-7_2
  3. Novais, C.; Freitas, A.R.; León-Sampedro, R.; Peixe, L.; Coque, T.M.. "Methods to Quantify DNA Transfer in Enterococcus". In Methods in Molecular Biology, 111-122. Springer US, 2020.
    Published • 10.1007/978-1-4939-9877-7_8
  4. Coque, T.M.; Freitas, A.R.; Novais, C.; Peixe, L.; Baquero, F.. "Mobile Genetic Elements and Lateral Genetic Transfer in Enterococci". In Enterococcus and Safety. Advances in Food Safety and Food Microbiology., 59-100. New York, United States: Nova Science Publishers, 2012.
    Published
Conference abstract
  1. Luís M. Sampaio; Cláudia-Ferreira, Ana; Prata, Joana C.; Rui M.S. Azevedo; Pacheco, Patricia ; Carla Campos; Novais, Carla; et al. "Nasal colonization by Staphylococcus aureus in Health Sciences students and analysis of risk factors under a One Health perspective. Scientific Letters. Vol. 1 No. Sup 1 (2023). https://doi.org/10.48797/sl.2023.79". Paper presented in II TOXRUN International Congress 2023, 2023.
    Published
  2. Ana C. Almeida-Santos; Duarte, Bárbara; Maria J. Teixeira; Ana P. Tedim; Novais, Carla; Luísa Maria Vieira Peixe; Freitas, Ana R. "Novel insights into healthy humans’ faecal carriage of enterococci: Enterococcus lactis as a dominant highly bacteriocinogenic species. Scientific Letters: Vol. 1 No. Sup 1 (2023). https://doi.org/10.48797/sl.2023.51". Paper presented in II TOXRUN International Congress 2023, 2023.
    Published
  3. Ana C. Almeida-Santos; Duarte, Bárbara; Ana P. Tedim; Miguel D. Fernández-de-Bobadilla; Luís M Silva; Helena Ramos; Teresa M. Coque; et al. "Vancomycin-resistant Enterococcus faecium circulating in a Portuguese hospital (2009-2021) challenges classical infection control. Scientific Letters. Vol. 1 No. Sup 1 (2023). https://doi.org/10.48797/sl.2023.78". Paper presented in II TOXRUN International Congress 2023, 2023.
    Published
  4. Ferreira, AC; Barbosa, D; Dinis-Oliveira, Ricardo Jorge; Freitas, Ana R. "Current perspective on the relevance of bacterial communities to estimate post-mortem intervals - how far are we? RevSALUS - Revista Científica Internacional Da Rede Académica Das Ciências Da Saúde Da Lusofonia, 4(Sup), 86–87 (https://doi.org/10.51126/revsalus.v4iSup.310)". Paper presented in I Congresso Internacional da TOXRUN, V Congresso da Associação Portuguesa de Ciências Forenses, XIX Jornadas Científicas de Ciências do Instituto Universitário de Ciências da Saúde, Porto, 2022.
    Published
  5. Teixeira, M. J.; Almeida-Santos, Ana C.; Duarte, B.; Novais, Carla; Dinis-Oliveira, Ricardo Jorge; Peixe, L; Freitas, Ana R. "Faecal carriage of enterococci by Portuguese healthy humans: preliminary data towards accurate species identification. RevSALUS - Revista Científica Internacional Da Rede Académica Das Ciências Da Saúde Da Lusofonia, 4(Sup), 125. (doi: https://doi.org/10.51126/revsalus.v4iSup.355)". Paper presented in I Congresso Internacional da TOXRUN, V Congresso da Associação Portuguesa de Ciências Forenses, XIX Jornadas Científicas de Ciências do Instituto Universitário de Ciências da Saúde, Porto, 2022.
    Published
  6. Nascimento, L. ; Figueiredo, L; Machado, M; Freitas, Ana R. "Monitoring of hygiene practices in institutional kitchens. RevSALUS - Revista Científica Internacional Da Rede Académica Das Ciências Da Saúde Da Lusofonia, 4(Sup), 126 (https://doi.org/10.51126/revsalus.v4iSup.356)". Paper presented in I Congresso Internacional da TOXRUN, V Congresso da Associação Portuguesa de Ciências Forenses, XIX Jornadas Científicas de Ciências do Instituto Universitário de Ciências da Saúde, Porto, 2022.
    Published
  7. Costa, A.; Luís, I.; Leão, M.; Freitas, Ana R. "Spread of relevant bacteria and antimicrobial resistance through mobile phones. RevSALUS - Revista Científica Internacional Da Rede Académica Das Ciências Da Saúde Da Lusofonia, 4(Sup), 127 (https://doi.org/10.51126/revsalus.v4iSup.357)". Paper presented in I Congresso Internacional da TOXRUN, V Congresso da Associação Portuguesa de Ciências Forenses, XIX Jornadas Científicas de Ciências do Instituto Universitário de Ciências da Saúde, Porto, 2022.
    Published
  8. Maia, M; Santos, M; Campos, M; Figueiredo, C et al.. "Strategies to mitigate antimicrobial resistance in livestock production. RevSALUS - Revista Científica Internacional Da Rede Académica Das Ciências Da Saúde Da Lusofonia, 4(Sup), 189 (https://doi.org/10.51126/revsalus.v4iSup.424)". Paper presented in I Congresso Internacional da TOXRUN, V Congresso da Associação Portuguesa de Ciências Forenses, XIX Jornadas Científicas de Ciências do Instituto Universitário de Ciências da Saúde, Porto, 2022.
    Published
  9. Calvo Mingo, O; Ferragud Ferragud, R; Freitas, Ana R. "Bacteriófagos como terapia das infeções causadas por bactérias multirresistentes serão os vírus a solução do futuro para as superbactérias? RevSALUS - Revista Científica Internacional Da Rede Académica Das Ciências Da Saúde Da Lusofonia, 4(Sup), 211 (https://doi.org/10.51126/revsalus.v4iSup.448)". Paper presented in I Congresso Internacional da TOXRUN, V Congresso da Associação Portuguesa de Ciências Forenses, XIX Jornadas Científicas de Ciências do Instituto Universitário de Ciências da Saúde, Porto, 2022.
    Published
  10. Freitas, A.R. (PRESENTING) et al.. "Comparative genomics of global linezolid-resistant Enterococcus faecalis strains unveils a chromosomal hotspot for optrA acquisition". Paper presented in ECCMID20 Abstract Book - 30th European Congress of Clinical Microbiology and Infectious Diseases (ECCMID). https://www.escmid.org/fileadmin/src/media/PDFs/Abstractbook2020_05.05.2020_Part3.pdf, 2020.
    Published
  11. Finisterra, L.; Novais, C.; Duarte, B.; Peixe, L.; Freitas, A.R. (PRESENTING). "Detection of linezolid-resistant enterococci carrying optrA and/or poxtA in raw-frozen dog foods commercialized in EU: trend or threath? Work selected for a Press Release". Paper presented in ECCMID20 Abstract Book - 30th European Congress of Clinical Microbiology and Infectious Diseases (ECCMID); https://www.escmid.org/fileadmin/src/media/PDFs/Abstractbook2020_05.05.2020_Part4.pdf, 2020.
    Published
  12. Pereira, A.P.; Duarte, B.; Antunes, P.; Peixe, L.; Freitas, A.R.; Novais, C.. "Intact EfrEF operons seem essential for chlorohexidine tolerance among Enterococcus faecalis from different hosts and genetic backgrounds". Paper presented in ECCMID20 Abstract Book - 30th European Congress of Clinical Microbiology and Infectious Diseases (ECCMID); https://www.escmid.org/fileadmin/src/media/PDFs/Abstractbook2020_05.05.2020_Part5.pdf, 2020.
    Published
  13. Freitas, A.R. (PRESENTING); Elghaieb, H.; Novais, C.; Duarte, B.; Abbassi, M.S.; Peixe, L.. "Genomic characterisation of clinical Enterococcus faecium from Tunisia: remarkable identity with ampicillin-resistant strains obtained from animals/meat in the same area". Paper presented in ECCMID20 Abstract Book - 30th European Congress of Clinical Microbiology and Infectious Diseases (ECCMID); https://www.escmid.org/fileadmin/src/media/PDFs/Abstractbook2020_05.05.2020_Part4.pdf, 2020.
    Published
  14. Rebelo, A.; Duarte, B.; Freitas, A.R. et al.. "Activity of peracetic acid against MDR Enterococcus faecium and non-typhoidal Salmonella from diverse epidemiological and genetic backgrounds". Paper presented in ECCMID20 Abstract Book - 30th European Congress of Clinical Microbiology and Infectious Diseases; https://www.escmid.org/fileadmin/src/media/PDFs/Abstractbook2020_05.05.2020_Part3.pdf, 2020.
    Published
  15. Novais, C.; Antunes, P.; Fonte, J.; Campos, J.; Silveira, E.; Grosso, F.; Machado, E.; Freitas, A.R. et al.. "Occurrence of antibiotic-resistant enterococci from antibiotic-free trout aquacultures. Clinical Microbiology and Infection. 18 (Issue S3): S45 (Abstr. O302). https://doi.org/10.1111/j.1469-0691.2012.03802.x". 2012.
    Published
  16. Silveira, E.; Freitas, A.R. et al.. "Spread of large conjugative plasmids carrying antibiotic, copper and mercury resistance genes among Enterococcus from different sources. Clinical Microbiology and Infection. 18 (Issue S3): S447 (Abstr. P1631). https://doi.org/10.1111/j.1469-0691.2012.03802.x". 2012.
    Published
  17. Antunes, P.; Campos, J.; Novais, C.; Machado, E.; Mourão, J.; Grosso, F.; Quinteira, S.; et al. "Aquacultures as reservoirs of pathogenic bacteria and clinically relevant antibiotic resistance genes. Clinical Microbiology and Infection. 18 (Issue S3): S448 (Abstr. P1632). https://doi.org/10.1111/j.1469-0691.2012.03802.x". 2012.
    Published
  18. Freitas, A.R. et al.. "Global dissemination of vancomycin-resistant VanB Enterococcus faecium causing outbreaks in different countries is mainly associated with chromosomal Tn1549/5382-like platforms. Clinical Microbiology and Infection. 18 (Issue S3): S329 (Abstr. P1290). https://doi.org/10.1111/j.1469-0691.2012.03802.x". 2012.
    Published
  19. Freitas, A.R. et al.. "Spread of vancomycin-resistance among Enterococcus faecalis: the influence of pAD1 and Inc18-plasmids (1987-2005). Clinical Microbiology and Infection. 14 (Issue S4): S59 (Abstr. O301). https://doi.org/10.1111/j.1469-0691.2011.03557.x". 2011.
    Published
  20. Tedim, A.P.; Freitas, A.R. et al.. "Fitness cost of widely disseminated conjugative plasmids carrying Tn1546-vanA among Enterococcus faecium and Enterococcus faecalis. Clinical Microbiology and Infection. 14 (Issue S4): S43 (Abstr. O214). https://doi.org/10.1111/j.1469-0691.2011.03557.x". 2011.
    Published
  21. Quinteira, S.; Novais, C.; Antunes, P.; Campos, J.; Freitas, A.R. et al.. "Tracking antibiotic resistance along the Silk Road. Clinical Microbiology and Infection. 14 (Issue S4): S58 (Abstr. O300). https://doi.org/10.1111/j.1469-0691.2011.03557.x". 2011.
    Published
  22. Silveira, E.; Freitas, A.R. et al.. "Co-dissemination of antibiotic and copper resistance genes in large conjugative plasmids of enterococci from different ecological niches. Clinical Microbiology and Infection. 14 (Issue S4): S696-97 (Abstr. R2336). https://doi.org/10.1111/j.1469-0691.2011.03557.x". 2011.
    Published
  23. Novais, C.; Escada, R.; Freitas, A.R. et al.. "High incidence of horizontal transfer of ampicillin resistance (pbp5) among CC17 Enterococcus faecium. Clinical Microbiology and Infection. 14 (Issue S4): S129 (Abstr. P619). https://doi.org/10.1111/j.1469-0691.2011.03558.x". 2011.
    Published
  24. Tedim, A.P.; Miranda, A.C.; Ruiz-Garbajosa, P.; Freitas, A.R. et al.. "Molecular characterisation of Enterococcus faecalis plasmids from clinical isolates in Spain. Clinical Microbiology and Infection. 14 (Issue S4): S43 (Abstr. O214). https://doi.org/10.1111/j.1469-0691.2011.03557.x". 2011.
    Published
  25. Freitas, A.R. et al.. "Diversity of hyl plasmids among international CC17 Enterococcus faecium strains, 1992-2009. Clinical Microbiology and Infection. 16 (Issue s2): S274-S275 (Abstr. 1008). https://doi.org/10.1111/j.1469-0691.2010.03239.x". 2010.
    Published
  26. Freitas, A.R. et al.. "Plasmid analysis of vancomycin-resistant enterococci isolates from Portuguese poultry and healthy humans. Clinical Microbiology and Infection. 16 (Issue s2): S275 (Abstr. 1009). https://doi.org/10.1111/j.1469-0691.2010.03239.x". 2010.
    Published
Conference poster
  1. Antunes, Beatriz; Almeida, Ana C.; Read, Antónia; Alves, Valquíria; Novais, Carla; Luísa Vieira Peixe; Freitas, Ana R. "Characterization of vancomycin-resistant Enterococcus faecium causing infections in one Portuguese hospital (2022-2024)". Paper presented in 1H -Toxrun International Congress 2024 Porto, 2024.
  2. Ana C. Almeida-Santos; Ana P. Tedim; Duarte, Bárbara; Luís M. Silva; Júlio Teixeira; Ana Paula Castro; Novais, Carla; Luísa Maria Vieira Peixe; Freitas, Ana R. "Vancomycin-Variable Enterococcus faecium (VVE) in human clinical and commensal samples: a challenge in antibiotic stewardship". Paper presented in 34th European Congress of Clinical Microbiology & Infectious Diseases, Barcelona, Spain, 2024.
  3. Matos, Cátia; Duarte, Bárbara; António Magalhaes; Francisca Pereira; Azevedo, Rui; Freitas, Ana R; Margarida Valente; et al. "A dive into diversity and antimicrobial resistance of Enterococcus from rivers used for drinking water production". Paper presented in 34th European Congress of Clinical Microbiology & Infectious Diseases, Barcelona, Spain, 2024.
  4. Quinteira, Sandra; Ana Beatriz Dias; Dantas, Rui; Pinho, Luís; Nuno Vieira Brito; Campos, Carla; Ana R. Freitas; Miranda, Carla. "Iconic autochthonous breeds of cattle in Northern Portugal are reservoirs of multidrug-resistant ESBL-carrying Escherichia coli". Paper presented in 3rd International Electronic Conference on Antibiotics (online), 2023.
  5. Matos, Cátia; António Magalhaes; Francisca Pereira; Bárbara Duarte; Ana R. Freitas; Margarida Valente; Carolina Tavares; et al. "Uncovering seasonal variations in antimicrobial-resistant enterococcus diversity within Porto region's surface waters". Paper presented in Microbiotec’23- Congress of Microbiology and Biotechnology 2023. Covilhã, Portugal, 2023.
  6. Matos, Cátia; António Magalhães; Francisca Pereira; Duarte, Bárbara; Ana R. Freitas; Margarida Valente; Carolina Tavares; et al. "Uncovering seasonal variations in antimicrobial-resistant enterococcus diversity within Porto region's surface waters". Paper presented in XVIII Congresso Científico AEFFUP. Porto. Portugal, 2023.
  7. Pereira, Ana P.; Antunes, Patrícia; Bierge, Paula; Willems, Rob J.L.; Corander, Jukka; Coque, Teresa M.; Pich, Oscar Q.; et al. "Unraveling Enterococcus Susceptibility to Quaternary Ammonium Compounds: genes, phenotypes, and the impact of environmental conditions". Paper presented in 6th International Conference on Enterococci. Porto, Portugal, 2023.
  8. Ana C. Almeida-Santos; Duarte, Bárbara; Maria João Teixeira ; Ana P. Tedim; Novais, Carla; Luísa Maria Vieira Peixe; Ana R. Freitas. "Enterococcus lactis steals the spotlight: a predominant and highly bacteriocinogenic enterococci species obtained from contemporary faecal samples of healthy humans in Portugal". Paper presented in 6th International Conference on Enterococci. Porto, Portugal, 2023.
  9. Ana C. Almeida-Santos; Novais, Carla; J. A. Paganini; Malbert R. C. Rogers; Weizhen Xu; Rob JL Willems; Corander, Jukka; et al. "Genomic Insights into Enterococcus faecalis: A Comprehensive Study of Population Structure, Plasmid Distribution, and Source Associations in Portugal". Paper presented in 6th International Conference on Enterococci. Porto, Portugal, 2023.
  10. Bierge, Paula; Miquel Sánchez-Osuna; Pereira, Ana P.; Ana R. Freitas; Antonio Casabella; Luísa Maria Vieira Peixe; Mateu Espasa; et al. "Unraveling the Enigma of Cephalosporin Susceptibility in Clinical Isolates of Enterococcus faecium: Genomic and Phenotypic Characterization of Unique Strains". Paper presented in 6th International Conference on Enterococci. Porto, Portugal, 2023.
  11. Rebelo, Andreia; Duarte, Bárbara; Marisa Almeida; Freitas, Ana R; Agostinho Almeida; Azevedo, Rui; Pinto, Edgar; et al. "Uncovering the Effects of Copper Feed Supplementation on the selection of Copper-Tolerant and Antibiotic-Resistant Enterococcus in Poultry Production for Sustainable Environmental Practices". Paper presented in 6th International Conference on Enterococci. Porto, Portugal, 2023.
  12. Matos, Cátia; Duarte, Bárbara; Rebelo, Andreia; Diana Lopes; Freitas, Ana R; Margarida Valente; Carolina Tavares; et al. "Occurrence and Diversity of Antimicrobial Resistance Bacteria in Rivers of Northern Portugal.". Paper presented in II Jornadas do Mestrado em Controlo de Qualidade. Porto, Portugal, 2023.
  13. Miquel Sánchez-Osuna; Bierge, Paula; Pereira, Ana P.; Antonio Casabella; Espasa, M.; Luísa Maria Vieira Peixe; Oriol Gasch; et al. "Genomas de Enterococcus con genes pbp5 redundantes: una perspectiva evolutiva de la diseminación de la resistencia a ampicilina". Paper presented in XXVI Congreso Nacional de la Sociedad Española de Enfermedades Infecciosas y Microbiología Clínica. Santiago de Compostela, Spain, 2023.
  14. Bierge, Paula; Miquel Sánchez-Osuna; Pereira, Ana P.; Rabanal, P.; Antonio Casabella; Mateu Espasa; Pérez D.; et al. "Genes de resistencia a ampicilina en movimiento: caracterización de un plásmido, similar al pRE25, de un aislado de Enterococcus faecium del torrente circulatório". Paper presented in XXVI Congreso Nacional de la Sociedad Española de Enfermedades Infecciosas y Microbiología Clínica. Santiago de Compostela, Spain, 2023.
  15. Matos, Cátia; Duarte, Bárbara; Rebelo, Andreia; Diana Lopes; Freitas, Ana R; Margarida Valente; Carolina Tavares. "Assessment of Antimicrobial Resistance Spread in Surface Aquatic Systems: A Study of Four Rivers in North Portugal". Paper presented in IJUP 2023 – Encontro de Investigação Jovem, Porto, Portugal, 2023.
  16. Cátia Matos; Duarte, Bárbara; Rebelo, Andreia; Diana Lopes; Freitas, Ana R; Margarida Valente; Carolina Tavares; et al. "Assessment of Antimicrobial Resistance Spread in Surface Aquatic Systems: A Study of Four Rivers in North Portugal". Paper presented in IJUP 2023 – Encontro de Investigação Jovem, Porto, Portugal, 2023.
  17. Quinteira, Sandra; Ana Beatriz Dias; Pinho, Luís; Nuno V. Brito; Campos, Carla; Ana R. Freitas; Miranda, Carla. "High occurrence of Multidrug-Resistant Escherichia coli from Holstein-Friesian cattle in Northern Portugal: a One Health challenge". Paper presented in II Toxrun International Congress 2023. Porto, Portugal, 2023.
  18. Ana C. Almeida-Santos; Duarte, Bárbara; Tedim, Ana P.; Miguel D. Fernández-de-Bobadilla; Silva, L.M.; Ramos, H.; Coque, Teresa M; et al. "Vancomycin-resistant Enterococcus faecium circulating in a Portuguese hospital (2009-2021) challenges classical infection control". Paper presented in II Toxrun International Congress 2023. Porto, Portugal, 2023.
  19. Luís M. Sampaio; Cláudia-Ferreira, Ana; Prata, Joana C.; Rui M.S. Azevedo; Pacheco, Patricia ; Carla Campos; Novais, Carla; et al. "Nasal colonization by Staphylococcus aureus in Health Sciences students and analysis of risk factors under a One Health perspective". Paper presented in II Toxrun International Congress 2023. Porto, Portugal, 2023.
  20. Bierge, Paula; Miquel Sánchez-Osuna; Pereira, Ana P.; Rabanal, P.; Antonio Casabella; Mateu Espasa; Daniel Pérez; et al. "Ampicillin resistance genes on the move: characterization of a pRE25-like::pbp5 plasmid from a bloodstream Enterococcus faecium". Paper presented in 33rd European Congress of Clinical Microbiology and Infectious Diseases (ECCMID), Copenhaga, Dinamarca, 2023.
  21. Ana C. Almeida-Santos; Duarte, Bárbara; Maria João Teixeira ; Ana P. Tedim; Novais, Carla; Luísa Maria Vieira Peixe; Ana R. Freitas. "An update on faecal carriage of Enterococcus species by healthy humans unveils E. lactis as a predominant highly bacteriocinogenic species that can harbor optrA. ePoster flash presentation.". Paper presented in 33rd European Congress of Clinical Microbiology and Infectious Diseases (ECCMID), Copenhagen, Denmark, 2023.
  22. Ana C. Almeida-Santos; Duarte, Bárbara; Ana P. Tedim; Fernández-De-Bobadilla MD; Luís M Silva; Helena Ramos; Coque, Teresa M.; et al. "Characterization of vancomycin-resistant Enterococcus faecium from a central hospital over the last decade: fluctuating clones, plasmids and bacteriocins challenge classical infection control". Paper presented in 33rd European Congress of Clinical Microbiology and Infectious Diseases (ECCMID), Copenhagen, Denmark, 2023.
  23. Pereira, Ana P.; Antunes, Patrícia; Luísa Maria Vieira Peixe; Freitas, Ana R; Novais, Carla. "Different growth conditions occurring in the environment affect Enterococcus spp. susceptibility to quaternary ammonium compounds". Paper presented in 33rd European Congress of Clinical Microbiology and Infectious Diseases (ECCMID), Copenhagen, Denmark, 2023.
  24. Miquel Sánchez-Osuna; Bierge, Paula; Pereira, Ana P.; Antonio Casabella; Mateu Espasa; Luísa Maria Vieira Peixe; Oriol Gasch; et al. "Enterococcus genomes with redundant pbp5 genes: evolutionary insights into the ampicillin resistance dissemination". Paper presented in 33rd European Congress of Clinical Microbiology and Infectious Diseases (ECCMID), Copenhagen, Denmark, 2023.
  25. Rebelo, Andreia; Duarte, Bárbara; Marisa Ribeiro-Almeida; Freitas, Ana R; Agostinho Almeida; Rui Azevedo; Eugénia Pinto; et al. "Impact of organic and inorganic copper feed in the expansion of tcrB+ multidrug-resistant Enterococcus from poultry production". Paper presented in 33rd European Congress of Clinical Microbiology and Infectious Diseases (ECCMID), Copenhagen, Denmark, 2023.
  26. Louise Roer; Hülya Kaya; Ana P. Tedim; Novais, Carla; Coque, Teresa M; Luísa Maria Vieira Peixe; Hasman, Henrik; Hammerum, Anette M.; Freitas, Ana R. "In silico extended virulence profiling of Enterococcus faecium and Enterococcus lactis isolates by use of whole-genome sequencing data". Paper presented in 33rd European Congress of Clinical Microbiology and Infectious Diseases (ECCMID), Copenhagen, Denmark, 2023.
  27. Ana C. Almeida-Santos; Maria J. Teixeira; Duarte, Bárbara; Novais, Carla; Luísa Maria Vieira Peixe; Ana R. Freitas. "Update on the faecal carriage of enterococci by Portuguese healthy humans unveils Enterococcus lactis as a predominant species". Paper presented in Dia do laboratório de Microbiologia 2022, FFUP, 2022.
  28. Rebelo, Andreia; Duarte, Bárbara; Carolina Ferreira; Mourão, Joana; Sofia Ribeiro; Freitas, Ana R; Coque, Teresa M; et al. "Chicken meat associated Enterococcus spp from 20 years apart overcomes multiple stresses of poultry production chain: antibiotics, copper and acids". Paper presented in Dia do laboratório de Microbiologia 2022, FFUP, 2022.
  29. Pereira, Ana P.; Antunes, Patrícia; Willems, R.J.; Corander, Jukka; Luísa Maria Vieira Peixe; Freitas, Ana R; Novais, Carla. "Enterococcus spp. are susceptible to Quaternary Ammonium Compounds used in disinfection and share tolerance genes with multiple bacterial taxa". Paper presented in Dia do laboratório de Microbiologia 2022, FFUP, 2022.
  30. Almeida-Santos, Ana C.; Duarte, B.; Tedim, Ana P; Silva, L.M.; Ramos, H.; Coque, T.M.; Novais, C.; Peixe, L; Freitas, A.R.. "Clonal and plasmid dynamics of vancomycin-resistant Enterococcus faecium obtained from a single hospital institution over the last 20 years". Paper presented in 13th International Meeting on Microbial Epidemiological Markers (IMMEM XIII), 2022.
  31. Tedim, Ana P.; Almeida-Santos, Ana C.; Lanza, V.F.; Novais, C.; Coque, Teresa M; Freitas, Ana R; Peixe, L.. "Unveiling the potential of bacteriocins as markers of the ecology of Enterococcus faecium and Enterococcus lactis". Paper presented in 13th International Meeting on Microbial Epidemiological Markers (IMMEM XIII), 2022.
  32. Belloso Daza, V.M.; Almeida-Santos, Ana C.; Freitas, A. R.; Novais, C.; Read, A.; Alves, V.; Cocconcelli, P.S.; Peixe, L.. "PCR-based clade specific differentiation of Enterococcus faecium and Enterococcus lactis". Paper presented in 13th International Meeting on Microbial Epidemiological Markers (IMMEM XIII), 2022.
  33. Pereira, A.P.; Antunes, P.; Willems, R.; Corander, J.; Coque, T.M.; Peixe, L; Freitas, Ana R; Novais, C.. "Evolution of chlorhexidine susceptibility and of the EfrEF operon among Enterococcus faecalis from diverse environments, clones and time spans". Paper presented in Visit of Scientific Advisory Board of UCIBIO, 2022.
  34. Bierge, P.; Pereira, A.P.; Rabanal, P.; Casabella, A.; Espasa, M.; Garcia de la Mària, C.; Peixe, L.; Gasch, O.; Freitas, A.R. et al.. "Genomic characterization of Enterococcus faecium isolates with atypical antibiotic resistance and virulence profiles causing bloodstream infections". Paper presented in 32nd European Congress of Clinical Microbiology and Infectious Diseases, 2022.
  35. Pereira, A. P.; Antunes, P.; Peixe, L; Freitas, A.R.; Novais, C.. "Good activity of quaternary ammonium compounds against multidrug-resistant Enterococcus faecium of different clonal lineages and origins". Paper presented in 32nd European Congress of Clinical Microbiology and Infectious Diseases, 2022.
  36. Ribeiro-Almeida, M.; Magalhães, Mafalda; Mourão, J.; Paiva, S.; Freitas, A.R. et al.. "Raw pet food: new human transmission route for Salmonella 1,4,[5],12:i:- and mcr-1 genes in Europe". Paper presented in 32nd European Congress of Clinical Microbiology and Infectious Diseases, 2022.
  37. Teixeira, M. J.; Almeida-Santos, Ana C.; Duarte, B.; Novais, C.; Dinis-Oliveira, Ricardo Jorge; Peixe, L; Freitas, Ana R. "Faecal carriage of enterococci by Portuguese healthy humans: preliminary data towards accurate species identification for forensic applications". Paper presented in I Congresso Internacional da TOXRUN & V Congresso Internacional da Associação Portuguesa, 2022.
  38. Magalhães, T. M.; Ribeiro-Almeida, M.; Ribeiro, T.; Freitas, A.R.; Novais, C.; Peixe, L.; Antunes, P.. "Raw pet food: new route for bacterial zoonotic health risks spread in Europe". Paper presented in Microbiotec21 - Congress of Microbiology and Biotechnology 2021 (online), 2021.
  39. Pereira, A.P.; Antunes, P.; Willems, R.; Corander, J.; Peixe, L.; Freitas, A.R.; Novais, C.. "Quaternary Ammonium Compounds activity and occurrence of tolerance associated genes among Enterococcus faecalis and Enterococcus faecium from diverse origins and timespans". Paper presented in Microbiotec21 - Congress of Microbiology and Biotechnology 2021 (online), 2021.
  40. Rebelo, A.; Duarte, B.; Ferreira, C.; Freitas, A. R.; Peixe, L.; Antunes, P.; Novais, C. "Exploring Enterococcus susceptibility to co-occurring stresses in the poultry meat production chain: antibiotics, copper, acidic pH and peracetic acid". Paper presented in Microbiotec21 - Congress of Microbiology and Biotechnology 2021 (online), 2021.
  41. Freitas, A. R.; Finisterra, L.; Tedim, A.P.; Duarte, B.; Novais, C.; Peixe, L.. "The missing link in MDR enterococci spread: detection of vanA, optrA, poxtA, cfrD and hospital-associated strains in European industrial dog food . Work selected for a presse release". Paper presented in 31st European Congress of Clinical Microbiology and Infectious Diseases (ECCMID) (online)., 2021.
  42. Pereira, A.P.; Duarte, B.; Antunes, P.; Willems, R.; Corander, J.; Peixe, L.; Freitas, A.R.; Novais, C.. "Chlorhexidine and quaternary ammonium compounds activity against Enterococcus faecalis from diverse sources, timespans and clonal lineages". Paper presented in World Microbe Forum (online), 2021.
  43. Finisterra, L.; Duarte, B.; Peixe, L.; Novais, C.; Freitas, A. R.. "Industrial dog food is a vehicle of multidrug-resistant enterococci carrying virulence genes often linked to human infections". Paper presented in IJUP 2021 – Encontro de Investigação Jovem da Universidade do Porto (online), 2021.
  44. Rebelo, A.; Mourão, J.; Freitas, A.R.; Coque, T.M.; Almeida, A.; Peixe, L.; Antunes, P.; Novais, C.. "Redundancy in ArsA proteins among enterococci makes this bacterial group a potential sentinel of arsenic pollution". Paper presented in One Health EJP Annual Scientific Meeting 2020, 2020.
  45. Duarte, B.; Pereira, A.P.; Freitas, A.R. et al.. "Identification of 2CS-CHXT operon signature of chlorhexidine tolerance among Enterococcus faecium". Paper presented in Microbiotec 19. Coimbra, Portugal, 2019.
  46. Rebelo, A.; Mourão, J.; Freitas, A.R. et al.. "Assess of acid tolerance of non-typhoidal Salmonella and Enterococcus faecium from different epidemiological and genetic backgrounds". Paper presented in Microbiotec 19. Coimbra, Portugal, 2019.
  47. Antunes, P.; Novais, C.; Novais, Â.; Grosso, F.; Ribeiro, T.G.; Mourão, J.; Perovic, S.; et al. "Implementation of MicroMundo@UPorto: an educacional project based on service-learning promoting antimicrobial resistance awareness among university and school students". Paper presented in Microbiotec 19. Coimbra, Portugal, 2019.
  48. Freitas, A.R. (PRESENTING) et al.. "Phylogenomics of global linezolid-resistant Enterococcus faecalis strains: new insights on clonal and genetic hotspots for optrA acquisition". Paper presented in Microbiotec 19. Coimbra, Portugal, 2019.
  49. Freitas, A.R. (PRESENTING) et al.. "A One Health perspective on the molecular evolution of antimicrobial-resistant Enterococcus: Bact_Drugs lab@FFUP role and highlights". Paper presented in DAY OF THE MICROBIOLOGY LABORATORY: Microbiology, Immunology and Oncobiology: Interdisciplinary approaches to control infectious diseases and cancer. Porto, Portugal, 2019.
  50. Novais, C.; Freitas, A.R. et al.. "RAW CHICKEN MEAT IS A VEHICLE OF AMPICILLIN-MULTIDRUG-RESISTANT Enterococcus faecium: IS IT A ONE HEALTH PROBLEM". Paper presented in 1º SIMPÓSIO INIAV PARA A SEGURANÇA ALIMENTAR: "RUMO À ALIMENTAÇÃO DO FUTURO. Vila do Conde, Portugal, 2019.
  51. Freitas, A.R. (PRESENTING) et al.. "Comparative genomics analysis of optrA-carrying Enterococcus faecalis strains: new insights on clonal and genetic hotspots for optrA acquisition". Paper presented in 12th International Meeting on Microbial Epidemiological Markers (IMMEM XII), Drubnovik, Croatia, 2019.
  52. Novais, Â.; Freitas, A.R. et al.. "IR Bactyping - Bacterial strain typing for real-time epidemiology". Paper presented in HiTech 2019 Closing Session. Nova School of Business and Economics, Carcavelos, Portugal (http://hiseedtech.com/full-news/hitech-2019-closing-session-overview), 2019.
  53. Novais, C.; Freitas, A.R. et al.. "High rates of ampicillin multidrug-resistant Enterococcus faecium in chicken meat from Portugal". Paper presented in 29th European Congress of Clinical Microbiology and Infectious Diseases (ECCMID). Amsterdam, Netherlands, 2019.
  54. Tedim, A.P.; Freitas A.R. (PRESENTING AUTHOR) et al.. "Towards the elucidations of bacteriocins role in the shaping of ecology and evolution of Enterococcus faecium". Paper presented in 29th European Congress of Clinical Microbiology and Infectious Diseases (ECCMID). Amsterdam, Netherlands, 2019.
  55. Duarte, B.; Pereira, A.P.; Freitas, A.R. et al.. "Identification of a conserved operon in chlorhexidine tolerant Enterococcus faecium from different clades and origins". Paper presented in 29th European Congress of Clinical Microbiology and Infectious Diseases (ECCMID). Amsterdam, Netherlands, 2019.
  56. de Oliveira, E.S.; Freitas, A.R. et al.. "Silent clonal spread of vancomycin-resistant Enterococcus faecalis colonising hospitalised patients in different health institutions of Natal, Brazil.". Paper presented in 29th European Congress of Clinical Microbiology and Infectious Diseases (ECCMID). Amsterdam, Netherlands, 2019.
  57. Rebelo, A.; Mourão, J.; Freitas, A.R. et al.. "Comprehensive assessment of the ability of non-typhoidal salmonella and Enterococcus faecium to survive acidic environments". Paper presented in 8th Congress of European Microbiologists (FEMS). Glasgow, UK, 2019.
  58. Novais, C.; Ferreira, C.; Freitas, A.R. et al.. "Widespread of ampicillin-multidrug-resistant Enterococcus faecium in raw chicken meat, Portugal". Paper presented in IJUP 2019 – Encontro de Investigação Jovem da Universidade do Porto, Portugal, 2019.
  59. Antunes, P.; Novais, C.; Novais, Â.; Grosso, F.; Ribeiro, T.G.; Mourão, J.; Perovic, S.; et al. "Implementation of micromundo@uporto: a pedagogical project of service-learning for education in microbiology and antimicrobial resistance awareness". Paper presented in 8th Congress of European Microbiologists (FEMS). Glasgow, UK, 2019.
  60. Novais, Â.; Freitas, A.R. et al.. "From the microbiology lab to routine clinical practice: a fast and cost effective method to support infection control". Paper presented in DAY OF THE MICROBIOLOGY LABORATORY: Microbiology, Immunology and Oncobiology: Interdisciplinary approaches to control infectious diseases and cancer. Porto, Portugal., 2019.
  61. Duarte, B.; Pereira, A.P.; Freitas, A.R. et al.; Coque, T.M.; Hasman, H.; Hammerum, A.M.; Antunes, P.; Peixe, L.; Novais, C.. "Identification of 2CS-CHXT operon signature of chlorhexidine tolerance among Enterococcus faecium". Paper presented in DAY OF THE MICROBIOLOGY LABORATORY: Microbiology, Immunology and Oncobiology: Interdisciplinary approaches to control infectious diseases and cancer. Porto, Portugal, 2019.
  62. León-Sampedro, R.; Barone, M.E.; Tedim, A.P.; Ayala, J.; Freitas, A.R. et al.. "Comparative genomics of emerging MDR Enterococcus raffinosus causing hospital outbreaks in European countries". Paper presented in 5th International Conference on Enterococci. Chamonix, France, 2018.
  63. León-Sampedro, R.; Barone, M.E.; Tedim, A.P.; Ayala, J.; Freitas, A.R. et al.. "Comparative genomics of emerging MDR Enterococcus raffinosus causing hospital outbreaks in European countries (P0461)". Paper presented in 28th European Congress Clinical Microbiology and Infectious Diseases (ECCMID). Madrid, Spain, 2018.
  64. Pereira, A.P.; Freitas, A.R. et al.. "Chlorhexidine has a good activity against multidrug-resistant Enterococcus faecium from human, animal and environmental origins". Paper presented in IJUP - 11º Encontro Investigação Jovem da Universidade do Porto. Porto, Portugal, 2018.
  65. Barone, M.E.; Ayala, J.; León-Sampedro, R.; Tedim, A.P.; Novais, C.; Freitas, A.R. et al.. "PBP profiles of ampicillin-resistant Enterococcus raffinosus (P0468)". Paper presented in 28th European Congress Clinical Microbiology and Infectious Diseases (ECCMID). Madrid, Spain, 2018.
  66. Novais, C.; Freitas, A.R. et al.. "Improved methodological conditions that accurately detected Enterococcus faecium with low-level ampicillin resistance (P2484)". Paper presented in 28th European Congress Clinical Microbiology and Infectious Diseases (ECCMID). Madrid, Spain, 2018.
  67. Rebelo, A.; Mourão, J.; Freitas, A.R. et al.. "Widespread copper, mercury and arsenic tolerance genes among multidrugresistant Enterococcus spp. from human, animal and environmental origins (P0454)". Paper presented in 28th European Congress Clinical Microbiology and Infectious Diseases (ECCMID). Madrid, Spain, 2018.
  68. Freitas, A.R. (PRESENTING) et al.. "Dissemination of ST22 Staphylococcus epidermidis with stable high-level resistance to linezolid and tedizolid in the Greek-Turkish region (2008-2016) (P1830)". Paper presented in 28th European Congress Clinical Microbiology and Infectious Diseases (ECCMID). Madrid, Spain, 2018.
  69. Pereira, A.P.; Freitas, A.R. et al.. "Activity of chlorhexidine against Enterococcus faecium from different origins, clonal lineages and antibiotic resistance phenotypes (P2082)". Paper presented in 28th European Congress Clinical Microbiology and Infectious Diseases (ECCMID). Madrid, Spain, 2018.
  70. Elghaieb, H.; Abbassi, M.S.; Novais, C.; Hassen, A.; Freitas, A.R. (PRESENTING); Peixe, L.. "From Tunisia, the must have link: food of animal origin carrying clinically relevant MDR enterococci (E0063)". Paper presented in 28th European Congress Clinical Microbiology and Infectious Diseases (ECCMID). Madrid, Spain, 2018.
  71. Freitas, A.R. (PRESENTING) et al.. "First description of methicillin-linezolid resistant Staphylococcus epidermidis without previous linezolid exposure, Turkish East Blacksea region, 2016". Paper presented in 7th Congress of European Microbiologists. Valencia, Spain, 2017.
  72. Mourão, J.; Rebelo, A.; Freitas, A.R. et al.. "Spread of variable arsenic tolerance genes among Enterococcus spp from different hosts, environments and geographical regions (<1906-2015)". Paper presented in 7th Congress of European Microbiologists. Valencia, Spain, 2017.
  73. León-Sampedro, R.; Martins, E.; del Campo, R.; Rodriguez-Baños, M.; Tedim, A.P.; Pozuelo, M.J.; Peixe, L.; Freitas, A.R. et al.. "Enterococcus faecalis in Spanish wild and migratory birds: from population structure to accessory genome". Paper presented in 7th Congress of European Microbiologists. Valencia, Spain, 2017.
  74. Novais, C.; Freitas, A.R. et al.. "What are we missing when epidemiological cut-off are not used to evaluate ampicillin phenotypes among Enterococcus faecium?". Paper presented in 27th European Congress Clinical Microbiology and Infectious Diseases (ECCMID). Vienna, Austria, 2017.
  75. Freitas, A.R. (PRESENTING) et al.. "Wide screening of oxazolidinone and phenicol resistance genes in Enterococcus reveals common optrA drivers in different continents (P1385)". Paper presented in 27th European Congress Clinical Microbiology and Infectious Diseases (ECCMID). Vienna, Austria, 2017.
  76. Freitas, A.R. (PRESENTING) et al.. "What predicts the safety of an Enterococcus faecium strain? Elucidative data about genetic markers associated with an increased risk of human infection (P0354).". Paper presented in 27th European Congress Clinical Microbiology and Infectious Diseases (ECCMID). Vienna, Austria., 2017.
  77. Freitas, A.R. (PRESENTING) et al.. "A call to action in Long-Term Care Facilities: high rates of colonization with ampicillin and vancomycin-resistant Enterococcus faecium hospital strains (P1386).". Paper presented in 27th European Congress Clinical Microbiology and Infectious Diseases (ECCMID). Vienna, Austria., 2017.
  78. Freitas, A.R. (PRESENTING) et al.. "Virulence characterization of international Enterococcus faecium from diverse sources (1986-2014): unveiling specific markers of hospital isolates (P0661).". Paper presented in 26th European Congress Clinical Microbiology and Infectious Diseases (ECCMID). Amsterdam, Netherlands., 2016.
  79. Freitas, A.R. (PRESENTING) et al.. "Emergence of linezolid-resistant Enterococcus faecium in Portugal: a patient co-infected with three ST117 isolates with variable antibiotic resistance profiles (P0672).". Paper presented in 26th European Congress Clinical Microbiology and Infectious Diseases (ECCMID). Amsterdam, Netherlands., 2016.
  80. León-Sampedro, R.; Martins, E.; del Campo, R.; Rodriguez-Baños, M.; Tedim, A.P.; Francia, M.V.; Pozuelo, M.J.; Peixe, L.; Freitas, A.R. et al.. "Multilevel antimicrobial resistance (antibiotic, biocide and heavy metal) and plasmid diversity in Enterococcus faecalis from wild and migratory birds (P0676).". Paper presented in 26th European Congress Clinical Microbiology and Infectious Diseases (ECCMID). Amsterdam, Netherlands., 2016.
  81. Oravcová, V.; Freitas, A.R. et al.. "Diversity of vanA-plasmids among Enterococcus faecium from wild birds: a comparison with hospitalized humans and environmental strains (P0666).". Paper presented in 26th European Congress Clinical Microbiology and Infectious Diseases (ECCMID). Amsterdam, Netherlands., 2016.
  82. Freitas, A.R. (PRESENTING) et al.. "Discrimination of vancomycin-resistant Enterococcus faecium clones by MLST (eBURST/BAPS) and spectroscopic techniques (MALDI-TOF MS and FTIR-ATR).". Paper presented in 11th International Meeting on Microbial Epidemiological Markers (IMMEM XI), Lisboa, Portugal., 2016.
  83. Novais, C.; Martins, E.; Dias, A.R.; Ribeiro, T.G.; Freitas, A.R.; Antunes, P.; Peixe, L.. "Tracking ampicillin-resistant Enterococcus faecium in non-clinical settings from Angola.". Paper presented in 25th European Congress Clinical Microbiology and Infectious Diseases (ECCMID). Copenhagen, Denmark., 2015.
  84. Sánchez-Valenzuela, A.; Silveira, E.; Freitas, A.R. et al.. "Seven merA alleles are spread among enterococci from diferent species, environments and clonal backgrounds (1926-2012)". Paper presented in 6th Congress of European Microbiologists (FEMS). Maastricht, Netherlands., 2015.
  85. León-Sampedro, R.; Tedim, A.P.; del Campo, R.; Novais, C.; Freitas, A.R. et al.. "Plasmid diversity among Enterococcus faecalis of different origins, including migratory birds, farm animals and humans.". Paper presented in 24th European Congress of Clinical Microbiology and Infectious Diseases (ECCMID). Barcelona, Spain., 2014.
  86. Freitas, A.R. (PRESENTING) et al.. "Extended Virulence Profile of Enterococcus faecium from Swine (Europe/USA, 1995-2008)". Paper presented in 24th European Congress of Clinical Microbiology and Infectious Diseases (ECCMID). Barcelona, Spain., 2014.
  87. Barros, M.; Antunes, P.; Pereira, J.; Campos, J.; Silveira, E.; Freitas, A.R.; Peixe, L.; Novais, C.. "From markets to fork: rainbow trouts with Enterococcus carrying virulence factors, antibiotic and biocide resistance genes.". Paper presented in 23rd European Congress of Clinical Microbiology and Infectious Diseases (ECCMID). Berlin, Germany., 2013.
  88. Freitas, A.R. et al.. "Microevolutionary Events Involving Narrow Host Plasmids Influences Local Fixation of Vancomycin-Resistance in Enterococcus.". Paper presented in 23rd European Congress of Clinical Microbiology and Infectious Diseases (ECCMID). Berlin, Germany., 2013.
  89. Silveira, E.; Marques, P.; Barros, M.; Freitas, A.R. et al.. "First description of a multidrug-resistant ST17 Enterococcus faecium carrying a conjugative Inc18-like:qacH plasmid.". Paper presented in 23rd European Congress of Clinical Microbiology and Infectious Diseases (ECCMID). Berlin, Germany., 2013.
  90. Novais, C.; León-Sampedro, R.; Freitas, A.R. et al.. "Spread of CTn5801 among enterococcal species from different origins.". Paper presented in 23rd European Congress of Clinical Microbiology and Infectious Diseases (ECCMID). Berlin, Germany., 2013.
  91. Tedim, A.P.; Tobes, R; Manrique, M.; Freitas, A.R. et al.. "Ecogenetics of antibiotic resistance plasmids of Enterococcus faecium (Efm) and Enterococcus faecalis (Efc).". Paper presented in International Plasmid Biology Conference 2012. Santander, Spain, 2012.
  92. Silveira, E.; Freitas, A.R. et al.. "Large conjugative enterococcal plasmids from different sources carry antibiotic resistance genes and a diversity of merA (mercury) genes spread among Gram-positive bacteria.". Paper presented in 3rd ASM Conference on Antimicrobial Resistance in Zoonotic Bacteria and Foodborne Pathogens in Animals, Humans and the Environment. Aix-en-Provence, France., 2012.
  93. Novais, C.; Antunes, P.; Silveira, E.; Campos, J.; Fonte, J.; Grosso, F.; Machado, E.; et al. "Influx of Enterococcus carrying antibiotic, copper and virulence resistance genes in antibiotic-free trout aquacultures by river water and feed.". Paper presented in 3rd ASM Conference on Antimicrobial Resistance in Zoonotic Bacteria and Foodborne Pathogens in Animals, Humans and the Environment. Aix-en-Provence, France, 2012.
  94. Silveira, E.; Freitas, A.R. et al.. "Spread of large conjugative plasmids carrying antibiotic, copper and mercury resistance genes among Enterococcus from different sources.". Paper presented in 22nd European Congress of Clinical Microbiology and Infectious Diseases (ECCMID). London, UK, 2012.
  95. Freitas, A.R. (PRESENTING) et al.. "Global dissemination of vancomycin-resistant VanB Enterococcus faecium causing outbreaks in different countries is mainly associated with chromosomal Tn1549/5382-like platforms". Paper presented in 22nd European Congress of Clinical Microbiology and Infectious Diseases (ECCMID). London, UK., 2012.
  96. Antunes, P.; Campos, J.; Novais, C.; Machado, E.; Mourão, J.; Grosso, F.; Quinteira, S.; et al. "Aquacultures as reservoirs of pathogenic bacteria and clinically relevant antibiotic resistance genes.". Paper presented in 22nd European Congress of Clinical Microbiology and Infectious Diseases (ECCMID). London, U, 2012.
  97. Silveira, E.; Freitas, A.R. et al.. "Dissemination of two copper resistance genes (tcrB and CueO) in multidrug resistant Enterococci from different sources". Paper presented in 4th FEMS Congress of European Microbiologists. Geneve, Switzerland, 2011.
  98. López, M.; Tedim, A.P.; Freitas, A.R. et al.. "Diversity within VanA Enterococcus faecium ST78 (CC17) in different countries (1998-2008).". Paper presented in 4th FEMS Congress of European Microbiologists. Geneve, Switzerland, 2011.
  99. Novais, C.; Escada, R.; Freitas, A.R. et al.. "High incidence of horizontal transfer of ampicillin resistance (pbp5) among CC17 Enterococcus faecium.". Paper presented in 21th European Congress of Clinical Microbiology and Infectious Diseases (ECCMID). Milan, Italy, 2011.
  100. López, M.; Tedim, A.P.; Freitas, A.R. et al.. "Diversidad y evolución de Enterococcus faecium-vanA ST78 en diferentes países (1991-2008).". Paper presented in XV Reunión de la Sociedad Española de Enfermedades Infecciosas y Microbiología Clínica (SEIMC). Malaga, Spain, 2011.
  101. Tedim, A.P.; Freitas, A.R. et al.. "Coste biológico de plásmidos de resistencia a la vancomicina (Tn1546-vanA) en Enterococcus faecium y Enterococcus faecalis.". Paper presented in XV Reunión de la Sociedad Española de Enfermedades Infecciosas y Microbiología Clínica (SEIMC). Malaga, Spain, 2011.
  102. Werner, G.; Freitas, A.R.; Coque, T.M.; Sollid, J.E.; Lester, C.; Hammerum, A.M. et al.. "Transferability of enterococcal vanA plasmids among Gram-positive, intestinal bacteria.". Paper presented in International Conference on Antimicrobial Research (ICAR). Valladolid, Spain, 2010.
  103. Antunes, P.; Mourão, J.; Freitas, A.R.; Peixe, L.. "Molecular characterization of multidrug-resistant nontyphoidal Salmonella enterica isolates from Portugal". Paper presented in 9th International Meeting on Microbial Epidemiological Markers (IMMEM). Wernigerode, Germany, 2010.
  104. Tedim, A.P.; Miranda, A.C.; Ruiz-Garbajosa, P.; Freitas, A.R. et al.. "Plasmid diversity among Enterococcus faecalis clinical isolates from Spain (2001-2009).". Paper presented in 3rd ASM Conference on Enterococci. Portland, Oregon, USA, 2010.
  105. Freitas, A.R.; Ruiz-Garbajosa, P.; Francia, M.V.; Novais, C.; Zervos, M.J.; Donabedian, S.; Peixe, L.; Baquero, F.; Peixe, L.V.. "Influence of pAD1 and Inc18-plasmids in the worldwide spread of vancomcycin-resistant Enterococcus faecalis outbreak strains (1987-2005). Poster 54B.". Paper presented in 3rd ASM Conference on Enterococci. Portland, Oregon, USA, 2010.
  106. Freitas, A.R. et al.. "Plasmid diversity among Enterococcus faecium belonging to the polyclonal sub-cluster CC17: their impact in the spread of vancomycin resistance worldwide (1986-2009). Poster 72B.". Paper presented in 3rd ASM Conference on Enterococci. Portland, Oregon, USA, 2010.
  107. Novais, C.; Freitas, A.R. et al.. "Spread of tetS among enterococci is associated with CTn6000 and plasmids. Poster 61A.". Paper presented in 3rd ASM Conference on Enterococci. Portland, Oregon, USA, 2010.
  108. Novais, C.; Freitas, A.R. et al.. "Distribution of Gram Positive Conjugative Transposons among vancomycin-resistant Enterococcus faecalis and Enterococcus faecium associated with international hospital outbreaks. Poster 71A.". Paper presented in 3rd ASM Conference on Enterococci. Portland, Oregon, USA, 2010.
  109. Novais, C.; Freitas, A.R. et al.. "Enterococci from human, animal and environmental sources are reservoir of Gram Positive conjugative transposons. Poster 70B.". Paper presented in 3rd ASM Conference on Enterococci. Portland, Oregon, USA, 2010.
  110. Freitas, A.R. et al.. "Diseminación global de megaplásmidos portadores de hylEfm en cepas internacionales de Enterococcus faecium CC17. Poster 531.". Paper presented in XIV Reunión de la Sociedad Española de Enfermedades Infecciosas y Microbiología Clínica (SEIMC). Barcelona, Spain, 2010.
  111. Coque, T.M.; Ruiz-Garbajosa, P.; Tedim, A.P.; Freitas, A.R. et al.. "Estructura poblacional de Enterococcus faecium resistente a vancomicina (EfmRV) en hospitales españoles (1996-2010). Poster 532.". Paper presented in XIV Reunión de la Sociedad Española de Enfermedades Infecciosas y Microbiología Clínica (SEIMC). Barcelona, Spain, 2010.
  112. Novais, C.; Freitas, A.R. et al.. "Diversity of CTn6000 among enterococci from different ecological niches. Poster 1004.". Paper presented in 20th European Congress of Clinical Microbiology and Infectious Diseases (ECCMID). Vienna, Austria, 2010.
  113. Silveira, E.; Freitas, A.R. et al.. "Co-dispersion of copper and antibiotic resistance genes among enterococci from different ecological niches, Portugal. Poster 921.". Paper presented in 20th European Congress of Clinical Microbiology and Infectious Diseases (ECCMID). Vienna, Austria, 2010.
  114. Antunes, P.; Mourão, J.; Freitas, A.R.; Peixe, L.. "Population structure of multidrug-resistant non-typhoidal Salmonella enterica isolates from Portugal. Poster 1315.". Paper presented in 20th European Congress of Clinical Microbiology and Infectious Diseases (ECCMID). Vienna, Austria, 2010.
  115. Freitas, A.R. (PRESENTING) et al.. "Diversity of hyl plasmids among international CC17 Enterococcus faecium strains, 1992-2009. Poster 1008.". Paper presented in 20th European Congress of Clinical Microbiology and Infectious Diseases (ECCMID). Vienna, Austria, 2010.
  116. Freitas, A.R. (PRESENTING) et al.. "Plasmid analysis of vancomycin-resistant enterococci isolates from Portuguese poultry and healthy humans. Poster 1009.". Paper presented in 20th European Congress of Clinical Microbiology and Infectious Diseases (ECCMID). Vienna, Austria, 2010.
  117. Freitas, A.R. (PRESENTING) et al.. "Diversity of hyl plasmids among international CC17 Enterococcus faecium strains (1992-2009).". Paper presented in ESCMID Conference on Enterococci: from Animals to Man. Barcelona, Spain, 2009.
  118. Freitas, A.R. (PRESENTING) et al.. "Population structure of international vancomycin resistant Enterococcus faecium (VREfm) strains causing outbreaks.". Paper presented in ESCMID Conference on Enterococci: from Animals to Man. Barcelona, Spain, 2009.
  119. Tedim, A.P.; Freitas, A.R. et al.. "Plasmid characterization of ampicillin resistant and ampicillin susceptible Enterococcus faecium causing bacteraemia in a Spanish University hospital in the last 14 years (1995-2008).". Paper presented in ESCMID Conference on Enterococci: from Animals to Man. Barcelona, Spain, 2009.
  120. Novais, C.; Freitas, A.R. et al.. "Distribution of Gram positive conjugative transposons among enterococci from human, animal and environmental sources.". Paper presented in ESCMID Conference on Enterococci: from Animals to Man. Barcelona, Spain, 2009.
  121. Gomes, F.; Silva, R.; Freitas, A.R. et al.. "Co-selection of copper and antibiotic resistance genes in enterococci from piggeries, Portugal.". Paper presented in 3rd FEMS Congress of European Microbiologists. Gothenburg, Sweden, 2009.
  122. Branquinho, R.; Freitas, A.R. et al.. "Genomic diversity and relationship of Bacillus pumilus isolates by PFGE fingerprinting.". Paper presented in 3rd FEMS Congress of European Microbiologists. Gothenburg, Sweden, 2009.
  123. Freitas, A.R. (PRESENTING) et al.. "International spread of of vancomycin-resistant Enterococcus faecium (CC17, CC5) and Enterococcus faecalis CC2 among animals and humans. Poster 840.". Paper presented in 19th European Congress of Clinical Microbiology and Infectious Diseases (ECCMID). Helsinki, Finland, 2009.
  124. Freitas, A.R. (PRESENTING) et al.. "Plasmid analysis of vancomycin-resistant Enterococcus faecium isolates from hospitals and aquatic environments in Portugal (1996-2008). Poster 841.". Paper presented in 19th European Congress of Clinical Microbiology and Infectious Diseases (ECCMID). Helsinki, Finland, 2009.
  125. Novais, C.; Freitas, A.R. et al.. "Portuguese healthy human volunteers are reservoirs of conjugative transposons associated with tetracycline and/or erythromycin resistance. Poster 948.". Paper presented in 19th European Congress of Clinical Microbiology and Infectious Diseases (ECCMID). Helsinki, Finland, 2009.
  126. Novais, C.; Freitas, A.R. et al.. "Spread of EfcTn1 in enterococci from different ecological niches. Poster 947.". Paper presented in 19th European Congress of Clinical Microbiology and Infectious Diseases (ECCMID). Helsinki, Finland, 2009.
  127. Novais, C.; Freitas, A.R. et al.. "Characterization of Gram-positive conjugative transposons among international epidemic vancomycin-resistant isolates of Enterococcus faecalis and Enterococcus faecium. Poster 949.". Paper presented in 19th European Congress of Clinical Microbiology and Infectious Diseases (ECCMID). Helsinki, Finland, 2009.
  128. Tedim, A.P.; Freitas, A.R. et al.. "Plasmid analysis of ampicillin-resistant and ampicillin-susceptible Enterococcus faecium causing bacteraemia in a Spanish university hospital (1995-2008). Poster 835.". Paper presented in 19th European Congress of Clinical Microbiology and Infectious Diseases (ECCMID). Helsinki, Finland, 2009.
  129. Freitas, A.R. (PRESENTING) et al.. "Genetic Dynamics of a Successful Enterococcus faecalis Clone Persistently Recovered from European Hospitals during the Last Decade (1993-2008).". Paper presented in 48th Interscience Conference on Antimicrobial Agents and Chemotherapy (ICAAC). Washington, USA, 2008.
  130. Freitas, A.R. (PRESENTING) et al.. "Plasmid analysis of international vancomycin resistant Enterococcus faecium strains causing outbreaks in the last 20 years (1986-2007).". Paper presented in International Plasmid Biology Conference (IPBC). Gdansk, Poland, 2008.
  131. Freitas, A.R. (PRESENTING) et al.. "Plasmid analysis of international vancomycin resistant Enterococcus faecalis strains (1989-2004).". Paper presented in International Plasmid Biology Conference (IPBC). Gdansk, Poland, 2008.
  132. Novais, C.; Freitas, A.R. et al.. "Portuguese piggeries as reservoir of antibiotic multi-resistant enterococci.". Paper presented in 1st ASM Conference on Antimicrobial Resistance in Zoonotic Bacteria and Foodborne Pathogens. Copenhagen, Denmark, 2008.
  133. Freitas, A.R. (PRESENTING) et al.. "Molecular characterization of Enterococcus isolates from Portugal.". Paper presented in 8th International Meeting on Microbial Epidemiological Markers (IMMEM). Zakopane, Poland, 2008.
  134. Ruiz-Garbajosa, P.; Freitas, A.R. et al.. "Estructura poblacional y análisis molecular comparativo de Enterococcus faecalis resistente a vancomicina asociados a brotes nosocomiales en Europa y América.". Paper presented in XIII Reunión de la Sociedad Española de Enfermedades Infecciosas y Microbiología Clínica (SEIMC). Madrid, Spain, 2008.
  135. Freitas, A.R. (PRESENTING) et al.. "Population Structure of Enterococcus isolates from Portugal.". Paper presented in 18th European Congress of Clinical Microbiology and Infectious Diseases (ECCMID). Barcelona, Spain, 2008.
  136. Freitas, A.R. (PRESENTING) et al.. "Plasmid Characterization of Vancomycin Resistant Enterococcus faecalis Strains from Different Continents (1989-2004).". Paper presented in 18th European Congress of Clinical Microbiology and Infectious Diseases (ECCMID). Barcelona, Spain, 2008.
  137. Freitas, A.R. (PRESENTING) et al.. "Plasmid characterization of vancomycin resistant Enterococcus faecium strains from different continents (1986-2007).". Paper presented in 18th European Congress of Clinical Microbiology and Infectious Diseases (ECCMID). Barcelona, Spain, 2008.
  138. Novais, C.; Freitas, A.R. et al.. ". Characterization of Gram Positive Conjugative Transposons in Enterococci from different sources by a Multiplex-PCR assay.". Paper presented in 18th European Congress of Clinical Microbiology and Infectious Diseases (ECCMID). Barcelona, Spain, 2008.
  139. Freitas, A.R. (PRESENTING) et al.. "Persistence of vancomycin-resistance in Portuguese poultry setting despite growth ban interventions: Horizontal transfer plays a relevant role?". Paper presented in 4th Congress of the European Society for Emerging Infections. Lisbon, Portugal, 2008.
  140. Freitas, A.R. (PRESENTING) et al.. "In Vitro Activity of Tigecycline against enterococci isolates from different sources of Portugal.". Paper presented in 47th Interscience Conference on Antimicrobial Agents and Chemotherapy (ICAAC). Chicago, USA, 2007.
  141. Freitas, A.R. (PRESENTING) et al.. "Interhospital dissemination of glycopeptide resistance among enterococcal clinical isolates from Portugal is associated to spread of epidemic pMG1-like plasmids carrying diverse Tn1546 variants.". Paper presented in 17th European Congress of Clinical Microbiology and Infectious Diseases (ECCMID). Munich, Germany, 2007.
  142. Freitas, A.R. (PRESENTING); Novais, C.; Coque, T.M.; Peixe, L.. "Large conjugative plasmids associated to the spread and persistence of vancomycin resistant enterococci in Portuguese hospitals.". Paper presented in 2nd FEMS Congress of European Microbiologists. Madrid. Spain, 2006.
Journal article
  1. Tedim, Ana P.; Almeida-Santos, Ana C.; Lanza, Val F.; Novais, Carla; Coque, Teresa M.; Freitas, Ana R. (co-corresponding); Peixe, Luísa. "Bacteriocin distribution patterns in Enterococcus faecium and Enterococcus lactis : bioinformatic analysis using a tailored genomics framework". Applied and Environmental Microbiology (2024): http://dx.doi.org/10.1128/aem.01376-24.
    10.1128/aem.01376-24
  2. Pereira, Ana P.; Antunes, Patrícia; Peixe, Luísa; Freitas, Ana R.; Novais, Carla. "Current insights into the effects of cationic biocides exposure on Enterococcus spp.". Frontiers in Microbiology 15 (2024): http://dx.doi.org/10.3389/fmicb.2024.1392018.
    10.3389/fmicb.2024.1392018
  3. Antunes, Patrícia; Novais, Carla; Peixe, Luísa; Freitas, Ana R. "Pet food safety: emerging bacterial hazards and implications for public health". Current Opinion in Food Science 57 (2024): 101165. http://dx.doi.org/10.1016/j.cofs.2024.101165.
    Published • 10.1016/j.cofs.2024.101165
  4. Ribeiro-Almeida, Marisa; Mourão, Joana; Magalhães, Mafalda; Freitas, Ana R; Novais, Carla; Peixe, Luísa; Antunes, Patrícia. "Raw meat-based diet for pets: a neglected source of human exposure to Salmonella and pathogenic Escherichia coli clones carrying mcr, Portugal, September 2019 to January 2020". Eurosurveillance 29 18 (2024): http://dx.doi.org/10.2807/1560-7917.es.2024.29.18.2300561.
    10.2807/1560-7917.es.2024.29.18.2300561
  5. Brenciani, Andrea; Cinthi, Marzia; Coccitto, Sonia Nina; Massacci, Francesca Romana; Albini, Elisa; Cucco, Lucilla; Paniccià, Marta; et al. "Global spread of the linezolid-resistant Enterococcus faecalis ST476 clonal lineage carrying optrA". Journal of Antimicrobial Chemotherapy (2024): http://dx.doi.org/10.1093/jac/dkae039.
    10.1093/jac/dkae039
  6. Roer, Louise; Kaya, Hülya; Tedim, Ana P.; Novais, Carla; Coque, Teresa M.; Aarestrup, Frank M.; Peixe, Luísa; et al. "VirulenceFinder for Enterococcus faecium and Enterococcus lactis: an enhanced database for detection of putative virulence markers by using whole-genome sequencing data". Microbiology Spectrum (2024): http://dx.doi.org/10.1128/spectrum.03724-23.
    10.1128/spectrum.03724-23
  7. Novais, Ângela; Gonçalves, Ana Beatriz; Ribeiro, Teresa G.; Freitas, Ana R.; Méndez, Gema; Mancera, Luis; Read, Antónia; et al. "Development and validation of a quick, automated, and reproducible ATR FT-IR spectroscopy machine-learning model for Klebsiella pneumoniae typing". Journal of Clinical Microbiology (2024): http://dx.doi.org/10.1128/jcm.01211-23.
    Published • 10.1128/jcm.01211-23
  8. Rebelo, Andreia; Duarte, Bárbara; Freitas, Ana R.; Almeida, Agostinho; Azevedo, Rui; Pinto, Edgar; Peixe, Luísa; Antunes, Patrícia; Novais, Carla. "Uncovering the effects of copper feed supplementation on the selection of copper-tolerant and antibiotic-resistant Enterococcus in poultry production for sustainable environmental practices". Science of The Total Environment 900 (2023): 165769. http://dx.doi.org/10.1016/j.scitotenv.2023.165769.
    10.1016/j.scitotenv.2023.165769
  9. Chaguza, Chrispin; Pöntinen, Anna K.; Top, Janetta; Arredondo-Alonso, Sergio; Freitas, Ana R.; Novais, Carla; Torres, Carmen; et al. "The population-level impact of Enterococcus faecalis genetics on intestinal colonization and extraintestinal infection". Microbiology Spectrum (2023): http://dx.doi.org/10.1128/spectrum.00201-23.
    10.1128/spectrum.00201-23
  10. Cláudia-Ferreira, Ana; Barbosa, Daniel José; Saegeman, Veroniek; Fernández-Rodríguez, Amparo; Dinis-Oliveira, Ricardo Jorge; Freitas, Ana R.. "The Future Is Now: Unraveling the Expanding Potential of Human (Necro)Microbiome in Forensic Investigations". Microorganisms 11 10 (2023): 2509. http://dx.doi.org/10.3390/microorganisms11102509.
    10.3390/microorganisms11102509
  11. Pereira, Ana P.; Antunes, Patrícia; Bierge, Paula; Willems, Rob J. L.; Corander, Jukka; Coque, Teresa M.; Pich, Oscar Q.; et al. "Unraveling Enterococcus susceptibility to quaternary ammonium compounds: genes, phenotypes, and the impact of environmental conditions". Microbiology Spectrum (2023): http://dx.doi.org/10.1128/spectrum.02324-23.
    10.1128/spectrum.02324-23
  12. Rebelo, Andreia; Duarte, Bárbara; Freitas, Ana R.; Peixe, Luísa; Antunes, Patrícia; Novais, Carla. "Exploring Peracetic Acid and Acidic pH Tolerance of Antibiotic-Resistant Non-Typhoidal Salmonella and Enterococcus faecium from Diverse Epidemiological and Genetic Backgrounds". Microorganisms 11 9 (2023): 2330. http://dx.doi.org/10.3390/microorganisms11092330.
    10.3390/microorganisms11092330
  13. Freitas, Ana R.; Werner, Guido. "Nosocomial Pathogens and Antimicrobial Resistance: Modern Challenges and Future Opportunities". Microorganisms 11 7 (2023): 1685. http://dx.doi.org/10.3390/microorganisms11071685.
    10.3390/microorganisms11071685
  14. Freitas, Ana R.; Karaman, Didem Sen; Teh, Cindy Shuan Ju. "Editorial: Women in antimicrobials, resistance and chemotherapy: 2022". Frontiers in Microbiology 14 (2023): http://dx.doi.org/10.3389/fmicb.2023.1148777.
    10.3389/fmicb.2023.1148777
  15. Novais, Carla; Almeida-Santos, Ana C.; Paula Pereira, Ana; Rebelo, Andreia; Freitas, Ana R.; Peixe, Luísa. "Alert for molecular data interpretation when using Enterococcus faecium reference strains reclassified as Enterococcus lactis". Gene 851 (2023): 146951. http://dx.doi.org/10.1016/j.gene.2022.146951.
    10.1016/j.gene.2022.146951
  16. Rebelo, Andreia; Duarte, Bárbara; Ferreira, Carolina; Mourão, Joana; Ribeiro, Sofia; Freitas, Ana R.; Coque, Teresa M.; et al. "Enterococcus spp. from chicken meat collected 20 years apart overcome multiple stresses occurring in the poultry production chain: Antibiotics, copper and acids". International Journal of Food Microbiology 384 (2023): 109981. http://dx.doi.org/10.1016/j.ijfoodmicro.2022.109981.
    10.1016/j.ijfoodmicro.2022.109981
  17. Belloso Daza, Mireya Viviana; Almeida-Santos, Ana C.; Novais, Carla; Read, Antónia; Alves, Valquíria; Cocconcelli, Pier Sandro; Freitas, A. R. (co-corresponding); Peixe, Luísa. "Distinction between Enterococcus faecium and Enterococcus lactis by a gluP PCR-Based Assay for Accurate Identification and Diagnostics". Microbiology Spectrum (2022): http://dx.doi.org/10.1128/spectrum.03268-22.
    10.1128/spectrum.03268-22
  18. Freitas, A.R. (corresponding); Werner, Guido. "Antibiotic susceptibility testing for therapy and antimicrobial resistance surveillance: genotype beats phenotype?". Future Microbiology 17 14 (2022): 1093-1097. http://dx.doi.org/10.2217/fmb-2022-0109.
    10.2217/fmb-2022-0109
  19. Pereira, Ana P.; Antunes, Patrícia; Willems, Rob; Corander, Jukka; Coque, Teresa M.; Peixe, Luísa; Freitas, A.R.; Novais, Carla. "Evolution of Chlorhexidine Susceptibility and of the EfrEF Operon among Enterococcus faecalis from Diverse Environments, Clones, and Time Spans". Microbiology Spectrum 10 4 (2022): http://dx.doi.org/10.1128/spectrum.01176-22.
    10.1128/spectrum.01176-22
  20. Freitas, A.R. (corresponding); Tedim, Ana P.; Almeida-Santos, Ana C.; Duarte, Bárbara; Elghaieb, Houyem; Abbassi, Mohamed S.; Hassen, Abdennaceur; Novais, Carla; Peixe, Luísa. Corresponding author: Peixe, Luísa. "High-Resolution Genotyping Unveils Identical Ampicillin-Resistant Enterococcus faecium Strains in Different Sources and Countries: A One Health Approach". Microorganisms 10 3 (2022): 632. http://dx.doi.org/10.3390/microorganisms10030632.
    Open access • Published • 10.3390/microorganisms10030632
  21. Almeida-Santos, Ana C.; Novais, Carla; Peixe, Luísa; Freitas, A.R. (corresponding). "Enterococcus spp. as a Producer and Target of Bacteriocins: A Double-Edged Sword in the Antimicrobial Resistance Crisis Context. Editor's choice.". Antibiotics 10 10 (2021): 1215. http://dx.doi.org/10.3390/antibiotics10101215.
    Published • 10.3390/antibiotics10101215
  22. Rebelo, Andreia; Mourão, Joana; Freitas, Ana R.; Duarte, Bárbara; Silveira, Eduarda; Sanchez-Valenzuela, Antonio; Almeida, Agostinho; et al. "Diversity of metal and antibiotic resistance genes in Enterococcus spp. from the last century reflects multiple pollution and genetic exchange among phyla from overlapping ecosystems". Science of The Total Environment 787 (2021): 147548. http://dx.doi.org/10.1016/j.scitotenv.2021.147548.
    Published • 10.1016/j.scitotenv.2021.147548
  23. Tedim, Ana P; Lanza, Val F; Rodríguez, Concepción M; Freitas, Ana R; Novais, Carla; Peixe, Luísa; Baquero, Fernando; Coque, Teresa M. "Fitness cost of vancomycin-resistant Enterococcus faecium plasmids associated with hospital infection outbreaks". Journal of Antimicrobial Chemotherapy (2021): http://dx.doi.org/10.1093/jac/dkab249.
    Published • 10.1093/jac/dkab249
  24. Freitas, Ana R.; Finisterra, Liliana; Tedim, Ana P.; Duarte, Bárbara; Novais, Carla; Peixe, Luísa. "Linezolid- and Multidrug-Resistant Enterococci in Raw Commercial Dog Food, Europe, 2019–2020". Emerging Infectious Diseases 27 8 (2021): 2221-2224. http://dx.doi.org/10.3201/eid2708.204933.
    Published • 10.3201/eid2708.204933
  25. Finisterra, Liliana; Duarte, Bárbara; Peixe, Luísa; Novais, Carla; Freitas, A.R. (corresponding). "Industrial dog food is a vehicle of multidrug-resistant enterococci carrying virulence genes often linked to human infections". International Journal of Food Microbiology (2021): 109284. http://dx.doi.org/10.1016/j.ijfoodmicro.2021.109284.
    10.1016/j.ijfoodmicro.2021.109284
  26. Pöntinen, Anna K.; Top, Janetta; Arredondo-Alonso, Sergio; Tonkin-Hill, Gerry; Freitas, Ana R.; Novais, Carla; Gladstone, Rebecca A.; et al. "Apparent nosocomial adaptation of Enterococcus faecalis predates the modern hospital era". Nature Communications 12 1 (2021): http://dx.doi.org/10.1038/s41467-021-21749-5.
    Open access • Published • 10.1038/s41467-021-21749-5
  27. Antunes, Patrícia; Novais, Carla; Novais, Ângela; Grosso, Filipa; Ribeiro, Teresa G; Mourão, Joana; Perovic, Svetlana; et al. "MicroMundo@UPorto: an experimental microbiology project fostering student's antimicrobial resistance awareness and personal and social development.". FEMS Microbiology Letters 368 4 (2021): Editor's choice. https://academic.oup.com/femsle/article/368/4/fnab016/6141117.
    Open access • Published • 10.1093/femsle/fnab016
  28. Freitas, Ana R; Pereira, AP; Novais, C; Peixe, L. "Multidrug-resistant high-risk Enterococcus faecium clones: can we really define them? Review". International Journal of Antimicrobial Agents 57 1 (2021): 106227. https://www.sciencedirect.com/science/article/abs/pii/S0924857920304386?via%3Dihub.
    Published
  29. Ana R Freitas; Ana P Tedim; Bárbara Duarte; Houyem Elghaieb; Mohamed S Abbassi; Abdennaceur Hassen; Antónia Read; et al. "Linezolid-resistant (Tn6246::fexB-poxtA) Enterococcus faecium strains colonizing humans and bovines on different continents: similarity without epidemiological link". Journal of Antimicrobial Chemotherapy (2020):
    Published • 10.1093/jac/dkaa227
  30. Carla Novais; Ana R. Freitas. "Transmission of Antibiotic Resistant Bacteria and Genes: Unveiling the Jigsaw Pieces of a One Health Problem". Pathogens 9 6 (2020): 497-497.
    Published • 10.3390/pathogens9060497
  31. Freitas, A.R. (corresponding); Tedim, Ana P.; Novais, Carla; Lanza, Val F.; Peixe, Luísa. "Comparative genomics of global optrA-carrying Enterococcus faecalis uncovers a common chromosomal hotspot for optrA acquisition within a diversity of core and accessory genomes". Microbial Genomics (2020):
    Open access • Published • 10.1099/mgen.0.000350
  32. Elghaieb, H.; Tedim, A.P.; Abbassi, M.S.; Novais, C.; Duarte, B.; Hassen, A.; Peixe, L.; Freitas, A.R. (corresponding). "From farm to fork: identical clones and Tn6674-like elements in linezolid-resistant Enterococcus faecalis from food-producing animals and retail meat". Journal of Antimicrobial Chemotherapy 75 1 (2020): 30-35.
    Published • 10.1093/jac/dkz419
  33. de Oliveira, E.S.; Freitas, A.R. (in ex-aequo with first author); Peixe, L.; Novais, C.; Melo, M.C.. "Silent clonal spread of vancomycin-resistant Enterococcus faecalis ST6 and ST525 colonizing patients at hospital admission in Natal, Brazil". Infection Control and Hospital Epidemiology (2020): 1-3.
    Published
  34. Freitas, A.R. (corresponding); Karpinsk, T. M.; Li, B.. "Editorial: Antimicrobials and Anticancers of Bacterial Origin". Frontiers in Microbiology (2020):
    Published
  35. Freitas, A.R. (corresponding); Novais, C.; Coque, T.M.; Peixe, L.. "Comment on: Emergence of plasmid-mediated oxazolidinone resistance gene poxtA from CC17 Enterococcus faecium of pig origin". Journal of Antimicrobial Chemotherapy (2019):
    Published • 10.1093/jac/dkz432
  36. Duarte, Bárbara; Pereira, Ana P.; Freitas, Ana R.; Coque, Teresa M.; Hammerum, Anette M.; Hasman, Henrik; Antunes, Patrícia; Peixe, Luísa; Novais, Carla. "2CS-CHXT Operon Signature of Chlorhexidine Tolerance among Enterococcus faecium Isolates". Applied and Environmental Microbiology 85 23 (2019): pii: e01589-19..
    Published • 10.1128/aem.01589-19
  37. Elghaieb H; Freitas, A.R. (in ex-aequo with first author); Abbassi MS; Novais, C.; Zouari M; Hassen A; Peixe, L.. "Dispersal of linezolid-resistant enterococci carrying poxtA or optrA in retail meat and food-producing animals from Tunisia". Journal of Antimicrobial Chemotherapy 74 10 (2019): 2865-2869.
    Published • 10.1093/jac/dkz263
  38. León-Sampedro, R.; del Campo, R.; Rodriguez-Baños, M.; Lanza, V.F.; Pozuelo, M.J.; Francés-Cuesta, C.; Tedim, A.P.; et al. "Phylogenomics of Enterococcus faecalis from wild birds: new insights into host-associated differences in core and accessory genomes of the species". Environmental Microbiology 21 8 (2019): 3046-3062.
    Published • 10.1111/1462-2920.14702
  39. Novais, Ângela; Freitas, Ana R.; Rodrigues, Carla; Peixe, Luísa. "Fourier transform infrared spectroscopy: unlocking fundamentals and prospects for bacterial strain typing". European Journal of Clinical Microbiology & Infectious Diseases 38 3 (2018): 427-448.
    Published • 10.1007/s10096-018-3431-3
  40. Bender, Jennifer K.; Cattoir, Vincent; Hegstad, Kristin; Sadowy, Ewa; Coque, Teresa M.; Westh, Henrik; Hammerum, Anette M.; et al. "Update on prevalence and mechanisms of resistance to linezolid, tigecycline and daptomycin in enterococci in Europe: Towards a common nomenclature". Drug Resistance Updates 40 (2018): 25-39.
    Published • 10.1016/j.drup.2018.10.002
  41. Freitas, A.R.; Dilek, A.R.; Peixe, L.; Novais, C.. "Dissemination of Staphylococcus epidermidis ST22 with Stable, High-Level Resistance to Linezolid and Tedizolid in the Greek-Turkish Region (2008-2016)". Infection Control and Hospital Epidemiology 39 4 (2018): 492-494.
    Published • 10.1017/ice.2018.5
  42. Freitas, A.R.; Tedim, A.P; Novais, C.; Coque, T.M.; Peixe, L.. "Distribution of putative virulence markers in Enterococcus faecium: towards a safety profile review.". Journal of Antimicrobial Chemotherapy 73 2 (2018): 306-319.
    Published • 10.1093/jac/dkx387
  43. Novais, C.; Campos, J; Freitas, A.R.; Barros, M.; Silveira, E.; Coque, T.M.; Antunes, P.; Peixe, L.. "Water supply and feed as sources of antimicrobial-resistant Enterococcus spp. in aquacultures of rainbow trout (Oncorhyncus mykiss), Portugal". Science of The Total Environment 625 (2018): 1102-1112.
    Published • doi.org/10.1016/j.scitotenv.2017.12.265
  44. Oravcová, V.; Peixe, L.; Coque, T.M.; Novais, C.; Francia, M.V.; Literák, I.; Freitas, AR (corresponding). "Wild corvid birds colonized with vancomycin-resistant Enterococcus faecium of human origin harbor epidemic vanA plasmids". Environment International 118 (2018): 125-133.
    Published • 10.1016/j.envint.2018.05.039
  45. Freitas, A.R.; Novais, C.; Duarte, B.; Pereira, A.P.; Coque, T.M.; Peixe, L.. "High rates of colonization by ampicillin-resistant enterococci in residents at long-term care facilities in Porto, Portugal". International Journal of Antimicrobial Agents 51 3 (2018): 503-507.
    Published • http://dx.doi.org/10.1016/j.ijantimicag.2017.11.007
  46. Freitas, A.R.; Elghaieb, H.; León-Sampedro, R.; Abbassi, M.S.; Novais, C.; Coque, T.M.; Hassen, A.; Peixe, L.. "Detection of optrA in the African continent (Tunisia) within a mosaic Enterococcus faecalis plasmid from urban wastewaters.". The Journal of antimicrobial chemotherapy 72 12 (2017): 3245-3251. Editor's choice.
    Published • 10.1093/jac/dkx321
  47. Freitas, A.R.; Sousa, C.; Novais, C.; Silva, L.; Ramos, H.; Coque, T.M.; Lopes, J.; Peixe, L.. "Rapid detection of high-risk Enterococcus faecium clones by matrix-assisted laser desorption ionization time-of-flight mass spectrometry". Diagnostic Microbiology and Infectious Disease 87 4 (2017): 299-307.
    Published • 10.1016/j.diagmicrobio.2016.12.007
  48. Freitas, A.R.; Tedim, A.P.; Francia, M.V.; Jensen, L.B.; Novais, C.; Peixe, L.; Sánchez-Valenzuela, A.; et al. "Multilevel population genetic analysis of vanA and vanB Enterococcus faecium causing nosocomial outbreaks in 27 countries (1986-2012)". Journal of Antimicrobial Chemotherapy 71 12 (2016): 3351-3366.
    Published • 10.1093/JAC/DKW312
  49. Novais, C.; Tedim, A.P.; Lanza, V.F.; Freitas, A.R.; Silveira, E.; Escada, R.; Roberts, A.P.; et al. "Co-diversification of Enterococcus faecium core genomes and PBP5: Evidences of PBP5 horizontal transfer". Frontiers in Microbiology 7 (2016): 1581.
    Published • 10.3389/fmicb.2016.01581
  50. Freitas, A.R.; Novais, C.; Read, A.; Alves, V.; Peixe, L.. "Co-infection with three linezolid-resistant Enterococcus faecium ST117 strain variants: What are we missing in diagnosis?". International Journal of Antimicrobial Agents 47 6 (2016): 500-501.
    Published • 10.1016/j.ijantimicag.2016.03.011
  51. Mourão, J.; Rae, J.; Silveira, E.; Freitas, A.R.; Coque, T.M.; Peixe, L.; Antunes, P.; Novais, C.. "Relevance of tcrYAZB operon acquisition for Enterococcus survival at high copper concentrations under anaerobic conditions". Journal of Antimicrobial Chemotherapy 71 2 (2016): 560-563.
    Published • 10.1093/jac/dkv330
  52. Martins, E.; Novais, C.; Freitas, A.R.; Dias, A.R.; Ribeiro, T.G.; Antunes, P.; Peixe, L.. "Filling the map for antimicrobial resistance in sub-Saharan Africa: ampicillin-resistant Enterococcus from non-clinical sources in Angola". Journal of Antimicrobial Chemotherapy 70 10 (2015): 2914-2916.
    Published • 10.1093/jac/dkv172
  53. Silveira, E.; Marques, P.; Freitas, A.R.; Mourão, J.; Coque, T.M.; Antunes, P.; Peixe, L.; Novais, C.. "A hospital sewage ST17 Enterococcus faecium with a transferable Inc18-like plasmid carrying genes coding for resistance to antibiotics and quaternary ammonium compounds (qacZ)". Journal of Global Antimicrobial Resistance 3 1 (2015): 49-51.
    Published • 10.1016/j.jgar.2014.11.005
  54. Silveira, E.; Freitas, A.R.; Antunes, P.; Barros, M.; Campos, J.; Coque, T.M.; Peixe, L.; Novais, C.. "Co-transfer of resistance to high concentrations of copper and first-line antibiotics among Enterococcus from different origins (humans, animals, the environment and foods) and clonal lineages". Journal of Antimicrobial Chemotherapy 69 4 (2014): 899-906.
    Published • 10.1093/jac/dkt479
  55. Novais, C.; Freitas, A.R.; Silveira, E.; Antunes, P.; Silva, R.; Coque, T.M.; Peixe, L.. "Spread of multidrug-resistant enterococcus to animals and humans: An underestimated role for the pig farm environment". Journal of Antimicrobial Chemotherapy 68 12 (2013): 2746-2754.
    Published • 10.1093/jac/dkt289
  56. Freitas, A.R.; Novais, C.; Tedim, A.P.; Francia, M.V.; Baquero, F.; Peixe, L.; Coque, T.M.. "Microevolutionary Events Involving Narrow Host Plasmids Influences Local Fixation of Vancomycin-Resistance in Enterococcus Populations". PLoS ONE 8 3 (2013):
    Open access • Published • 10.1371/journal.pone.0060589
  57. Novais, C.; Freitas, A.R.; Silveira, E.; Baquero, F.; Peixe, L.; Roberts, A.P.; Coque, T.M.. "A tet(S/M) hybrid from CTn6000 and CTn916 recombination". Microbiology (United Kingdom) 158 11 (2012): 2710-2711.
    Published • 10.1099/mic.0.062729-0
  58. Novais, C.; Freitas, A.R.; Silveira, E.; Baquero, F.; Peixe, L.; Roberts, A.P.; Coque, T.M.. "Different genetic supports for the tet(S) gene in enterococci". Antimicrobial Agents and Chemotherapy 56 11 (2012): 6014-6018.
    Published • 10.1128/AAC.00758-12
  59. Valdezate, S.; Miranda, C.; Navarro, A.; Freitas, A.R.; Cabrera, J.J.; Carrasco, G.; Coque, T.M.; Jiménez-Romano, E.; Saéz-Nieto, J.A.. "Clonal outbreak of ST17 multidrug-resistant Enterococcus faecium harbouring an Inc18-like::Tn1546 plasmid in a haemo-oncology ward of a Spanish hospital". Journal of Antimicrobial Chemotherapy 67 4 (2012): 832-836.
    Published • doi:10.1093/jac/dkr545
  60. Macedo, A.S.; Freitas, A.R.; Abreu, C.; Machado, E.; Peixe, L.; Sousa, J.C.; Novais, C.. "Characterization of antibiotic resistant enterococci isolated from untreated waters for human consumption in Portugal". International Journal of Food Microbiology 145 1 (2011): 315-319.
    Published • 10.1016/j.ijfoodmicro.2010.11.024
  61. Laverde Gomez, J.A.; van Schaik, W.; Freitas, A.R.; Coque, T.M.; Weaver, K.E.; Francia, M.V.; Witte, W.; Werner, G.. "A multiresistance megaplasmid pLG1 bearing a hylEfm genomic island in hospital Enterococcus faecium isolates". International Journal of Medical Microbiology 301 2 (2011): 165-175.
    Published • 10.1016/j.ijmm.2010.08.015
  62. Werner, G.; Freitas, A.R.; Coque, T.M.; Sollid, J.E.; Lester, C.; Hammerum, A.M.; Garcia-Migura, L.; et al. "Host range of enterococcal vanA plasmids among Gram-positive intestinal bacteria". Journal of Antimicrobial Chemotherapy 66 2 (2011): 273-282.
    Published • 10.1093/jac/dkq455
  63. Freitas, A.R.; Coque, T.M.; Novais, C.; Hammerum, A.M.; Lester, C.H.; Zervos, M.J.; Donabedian, S.; et al. "Human and swine hosts share vancomycin-resistant Enterococcus faecium CC17 and CC5 and Enterococcus faecalis CC2 clonal clusters harboring Tn1546 on indistinguishable plasmids". Journal of Clinical Microbiology 49 3 (2011): 925-931.
    Published • 10.1128/JCM.01750-10
  64. Freitas, A.R.; Novais, C.; Correia, R.; Monteiro, M.; Coque, T.M.; Peixe, L.. "Non-susceptibility to tigecycline in enterococci from hospitalised patients, food products and community sources". International Journal of Antimicrobial Agents 38 2 (2011): 174-176.
    Published • 10.1016/j.ijantimicag.2011.04.014
  65. Ratkai, C.; Peixe, L.V.; Grosso, F.; Freitas, A.R.; Antunes, P.; Fodor, E.; Hajdú, E.; Nagy, E.. "Successful application of the DiversiLab repetitive-sequence-based PCR typing system for confirmation of the circulation of a multiresistant Pseudomonas aeruginosa clone in different hospital wards". Diagnostic Microbiology and Infectious Disease 67 2 (2010): 202-206.
    Published • 10.1016/j.diagmicrobio.2010.01.010
  66. Freitas, A.R.; Tedim, A.P.; Novais, C.; Ruiz-Garbajosa, P.; Werner, G.; Laverde-Gomez, J.A.; Cantón, R.; et al. "Global spread of the hyl Efm colonization-virulence gene in megaplasmids of the Enterococcus faecium CC17 polyclonal subcluster". Antimicrobial Agents and Chemotherapy 54 6 (2010): 2660-2665.
    Published • 10.1128/AAC.00134-10
  67. Freitas, A.R.; Novais, C.; Ruiz-Garbajosa, P.; Coque, T.M.; Peixe, L.. "Erratum: Dispersion of multidrug-resistant Enterococcus faecium isolates belonging to major clonal complexes in different portuguese settings". Applied and Environmental Microbiology 76 3 (2010): 988.
    Published • 10.1128/AEM.02712-09
  68. Freitas, A.R.; Novais, C.; Ruiz-Garbajosa, P.; Coque, T.M.; Peixe, L.. "Clonal expansion within clonal complex 2 and spread of vancomycin-resistant plasmids among different genetic lineages of Enterococcus faecalis from Portugal". Journal of Antimicrobial Chemotherapy 63 6 (2009): 1104-1111.
    Published • 10.1093/jac/dkp103
  69. Freitas, A.R.; Novais, C.; Ruiz-Garbajosa, P.; Coque, T.M.; Peixe, L.. "Dispersion of multidrug-resistant Enterococcus faecium isolates belonging to major clonal complexes in different Portuguese settings". Applied and Environmental Microbiology 75 14 (2009): 4904-4908.
    Published • 10.1128/AEM.02945-08
  70. Novais, C.; Freitas, A.R.; Sousa, J.C.; Baquero, F.; Coque, T.M.; Peixe, L.V.. "Diversity of Tn1546 and its role in the dissemination of vancomycin-resistant enterococci in Portugal". Antimicrobial Agents and Chemotherapy 52 3 (2008): 1001-1008.
    Published • 10.1128/AAC.00999-07
Journal issue
  1. Novais, C.; Antunes, P.; Freitas, A. R.. "Environmental Hotspots and Drivers of Antimicrobial Resistance". Antibiotics (2023): https://www.mdpi.com/journal/antibiotics/special_issues/Environment_antibiotic.
  2. Novais, C.; Antunes, P.; Freitas, Ana R. "Molecular Epidemiology of Human Bacterial Pathogens Tolerant to Biocides and Resistant to Antibiotics". Microorganisms (2023): https://www.mdpi.com/journal/microorganisms/special_issues/G9L7Y6VTGV.
    Coeditor
  3. Freitas, Ana R; Breck Duerkop; Julia Willet. "Thematic Issue on Versatile Lifestyles of Enterococci as Commensals and Pathogens (2 articles edited)". FEMS Microbes (2023): https://academic.oup.com/femsmicrobes/pages/call-for-papers.
    Invited editor
  4. Freitas, Ana R; Teh, Cindy Shuan Ju; Krassimira Radoykova Hristova. "Women in Antimicrobials, Resistance and Chemotherapy: 2023". Frontiers in Microbiology (2023): https://www.frontiersin.org/research-topics/53619/women-in-antimicrobials-resistance-and-chemotherapy-2023.
    Invited editor
  5. Freitas, Ana R; Werner, Guido. "Special Issue Guest Editor of Nosocomial Pathogens and Antibiotic Resistance". Microorganisms (2022): https://www.mdpi.com/journal/microorganisms/special_issues/nosocomial_pathogens_antibiotic_resistance.
    Invited editor
  6. Freitas, A. R.; Shuan Ju Teh, C.; Sen Karaman, D.. "Women in Antimicrobials, Resistance and Chemotherapy: 2022". Frontiers in Microbiology (2022): https://www.frontiersin.org/research-topics/33208/women-in-antimicrobials-resistance-and-chemotherapy-2022.
  7. Ana R. Freitas; Tomasz M. Karpinski; Bingyun Li. "Special Issue Guest Editor of Antimicrobials and Anticancers of Bacterial Origins, Volume 2". Frontiers in Microbiology (2021): https://www.frontiersin.org/research-topics/17754/antimicrobials-and-anticancers-of-bacterial-origins-volume-2.
  8. Tomasz M. Karpinski; Ana R. Freitas; Bingyun Li. "Special Issue Guest Editor of Antimicrobials and Anticancers of Bacterial Origins". Frontiers in Microbiology (2020): https://www.frontiersin.org/research-topics/8726/antimicrobials-and-anticancers-of-bacterial-origins.
    Invited editor
  9. Freitas, Ana R; Novais, Carla. "Special Issue Guest Editor of Transmission of Antibiotic Resistant Bacteria and Genes: Unveiling the Jigsaw Pieces of a One Health Problem". Pathogens (2019): https://www.mdpi.com/journal/pathogens/special_issues/Transmission_Antibiotic_Resistant_Bacteria_Genes.
    Invited editor
Magazine article
  1. Silveira, E.; Gomes, F.; Freitas, A.R.; Silva, R.; Sousa, J.C.; Coque, T.M.; Peixe, L.. "High prevalence of tcrB, a copper resistance gene, in antibiotic-resistant enterococci from swine and piggeries environment.", Revista da Faculdade de Ciências da Saúde., 2010, https://bdigital.ufp.pt/bitstream/10284/3011/3/20-27.pdf.
  2. Silveira, E.; Freitas, A.R.; Peixe, L.; Novais, C.. "Environmental spread of antibiotic molecules, antibiotic resistant bacteria and genes: jigsaw pieces of a public health problem.", Revista da Faculdade de Ciências da Saúde, 2009, http://bdigital.ufp.pt/bitstream/10284/1260/1/244-253_FCS_06_-4.pdf.
  3. Nogueira, A.; Dias, A.; Silva, R.; Freitas, A.R.; Sousa, J.C.; Peixe, L.; Novais, C.. "Contribuição das suiniculturas na selecção e disseminação de Enterococcus spp resistentes às tetraciclinas.", Revista da Faculdade de Ciências da Saúde, 2008, http://bdigital.ufp.pt/bitstream/10284/968/2/164-173.pdf.
Manual
  1. Freitas, A.R.. "Glicopeptídeos, lipopeptídeos e polipeptídeos". Em: MANUAL DA ASSOCIAÇÃO PORTUGUESA DE FARMACÊUTICOS HOSPITALARES SOBRE ANTIMICROBIANOS. 1ª Edição. ISBN: 978-972-99431-3-3.. 2022.
  2. Antunes, P.; Novais, C.; Freitas, A.R.; Novais, Â.; Grosso, F.; Ribeiro, T.G.; Mourão, J.; et al. Guia básico de MicroMundo@UPorto: Em Busca de Microrganismos Produtores de Novos Antibióticos em Habitats Naturais. 2018.
Newsletter article
  1. Ana R. Freitas; Proença, Diogo N.. "SPM Newsletter 1", 2024, https://spmicrobiologia.wordpress.com/2024/02/02/spm-newsletter-2/.
  2. Finisterra, L.; Novais, C.; Duarte, B.; Peixe, L.; Freitas, A.R.. "Study reveals raw-type dog foods as a major source of multidrug-resistant bacteria that could potentially colonize humans", EurekAlert, 2020, https://www.eurekalert.org/pub_releases/2020-04/esoc-srr041720.php.
  3. Finisterra, L.; Novais, C.; Duarte, B.; Peixe, L.; Freitas, A.R.. "Study finds raw-type dog foods as a major source of multidrug-resistant bacteria that could potentially colonize humans", Center for Infectious Disease Research and Policy (CIDRAP), 2020, https://www.cidrap.umn.edu/news-perspective/2020/04/eccmid-studies-probe-resistant-pathogens-pets-pet-food-and-people.
  4. Finisiterra, L.; Novais, C.; Duarte, B.; Peixe, L.; Freitas, A.R.. "Study finds raw-type dog foods as a major source of multidrug-resistant bacteria that could potentially colonize humans", PHYS.ORG, 2020, https://phys.org/news/2020-04-raw-type-dog-foods-major-source.html.
  5. Finisterra, L.; Novais, C.; Duarte, B.; Peixe, L.; Freitas, A.R.. "Raw dog food contains drug resistant bacteria, study finds", MedicalNewsToday, 2020, https://www.medicalnewstoday.com/articles/raw-dog-food-contains-drug-resistant-bacteria-study-finds#Bacteria-resistance-to-key-antibiotics.
  6. Finisterra, L.; Novais, C.; Duarte, B.; Peixe, L.; Freitas, A.R.. "Pet food can contain drug-resistant bacteria that may pass to humans", NewScientist, 2020, https://www.newscientist.com/article/2241580-pet-food-can-contain-drug-resistant-bacteria-that-may-pass-to-humans/.
Online resource
  1. Ana Almeida-Santos; Ana P. Tedim; Novais, Carla; Luísa Maria Vieira Peixe; Freitas, Ana R. BioProject ID PRJNA1055432 of NCBI whole genome sequences (21 Enterococcus faecium, 13 E. lactis, 10 E. faecalis, one E. thailandicus). 2023. https://www.ncbi.nlm.nih.gov/bioproject/?term=PRJNA1055432.
  2. Andreia Rebelo; Novais, Carla; Antunes, Patrícia; Freitas, Ana R; Luísa Maria Vieira Peixe. BioProject PRJNA948394 of NCBI whole genome sequences - Role of copper feed to the selection of multidrug-resistant Enterococcus from poultry production. 2023. https://www.ncbi.nlm.nih.gov/bioproject/?term=PRJNA948394.
  3. Louise Roer; Novais, Carla; Luísa Maria Vieira Peixe; Freitas, Ana R. Enterococcus faecium VirulenceFinder (46 Enterococcus faecium genomes). 2023. https://www.ncbi.nlm.nih.gov/bioproject/?term=PRJNA796949.
  4. Belloso Daza, V.M.; Almeida-Santos, Ana C.; Freitas, A.R. et al.. BioProject PRJNA851953 of NCBI (whole genome sequences of Enterococcus lactis genomes C1041, C1055, HPH55b, HPH67, HPH133, HPH282, HPH288). 2022. https://www.ncbi.nlm.nih.gov/bioproject/?term=PRJNA851953.
  5. Tedim, A.P.; Elghaieb, H.; Abbassi, M.S.; Novais, C.; Peixe, L.; Freitas, A.R.. Enterococcus faecalis strain 728T, whole genome shotgun sequencing project deposited at DDBJ/ENA/GenBank (Bioproject PRJNA517381). GenBank accession number: SEWT00000000.. 2019. https://www.ncbi.nlm.nih.gov/nuccore/SEWT00000000.
  6. Tedim, A.P.; Elghaieb, H.; Abbassi, M.S.; Novais, C.; Hassen, A.; Peixe, L.; Freitas, A.R.. Enterococcus faecalis strain 712T, whole genome shotgun sequencing project deposited at DDBJ/ENA/GenBank (Bioproject PRJNA517381). GenBank accession number: SEWU00000000. 2019. https://www.ncbi.nlm.nih.gov/nuccore/SEWU00000000.
  7. Tedim, A.P.; Elgahieb, H.; Abbassi, M.S.; Novais, C.; Hassen, A.; Peixe, L.; Freitas, A.R.. Enterococcus faecalis strain 612T, whole genome shotgun sequencing project deposited at DDBJ/ENA/GenBank (Bioproject PRJNA517381). GenBank accession number: SEWV00000000. 2019. https://www.ncbi.nlm.nih.gov/nuccore/SEWV00000000.
  8. Elgahieb, H.; Tedim, A.P.; Abbassi, M.S.; Novais, C.; Duarte, B.; Hassen, A.; Peixe, L.; Freitas, A.R.. Enterococcus faecalis strain 697T, whole genome shotgun sequencing project deposited at DDBJ/ENA/GenBank (Bioproject PRJNA517381). GenBank accession number: VDMY00000000. 2019. https://www.ncbi.nlm.nih.gov/nuccore/VDMY00000000.
  9. Tedim, A.P.; Freitas, A.R.; Novais, C.; Duarte, B.; Elghaieb, H.; Abbassi, M.S.; Peixe, L.. Enterococcus faecium strain 2FEZ, whole genome shotgun sequencing project deposited at DDBJ/ENA/GenBank (Bioproject PRJNA580369). GenBank accession number: WLYP00000000. 2019. https://www.ncbi.nlm.nih.gov/nuccore/WLYP00000000.
  10. Tedim, A.P.; Freitas, A.R. et al.; Novais, C.. Enterococcus faecium strain 149T, whole genome shotgun sequencing project deposited at DDBJ/ENA/GenBank (Bioproject PRJNA580369). GenBank accession number: WLYQ00000000. 2019. https://www.ncbi.nlm.nih.gov/nuccore/WLYQ00000000.
  11. Tedim, A.P.; Freitas, A.R. et al.. Enterococcus faecium strain C59, whole genome shotgun sequencing project deposited at DDBJ/ENA/GenBank (Bioproject PRJNA580369). GenBank accession number: WLYR01000000. 2019. https://www.ncbi.nlm.nih.gov/nuccore/WLYR00000000.1.
  12. Novais, C.; Duarte, B.; Pereira, A.P.; Freitas, A.R. et al.. Study of chlorhexidine tolerance among Enterococcus faecium (37 E. faecium genomes). Whole genome shotgun sequencing project deposited at DDBJ/ENA/GenBank (Bioproject PRJNA546230). 2019. https://www.ncbi.nlm.nih.gov/bioproject/PRJNA546230.
  13. Novais, C.; Tedim, A.P.; Lanza, V.F.; Freitas, A.R. et al.. Enterococcus faecium strain GE1, whole genome shotgun sequencing project. GenBank accession number NZ_MBRG01000000. 2019. https://www.ncbi.nlm.nih.gov/nuccore/NZ_MBRG00000000.1.
  14. Novais, C.; Tedim, A.P.; Lanza, V.F.; Freitas, A.R. et al.. Enterococcus faecium strain HPH2, whole genome shotgun sequencing project. GenBank accession number NZ_MBRH01000000. 2019. https://www.ncbi.nlm.nih.gov/nuccore/NZ_MBRH00000000.1.
  15. Novais, C.; Tedim, A.P.; Lanza, V.F.; Freitas, A.R. et al.. Enterococcus faecium strain TCGEHPH2.1, whole genome shotgun sequencing project. GenBank accession number NZ_MBRI00000000. 2019. https://www.ncbi.nlm.nih.gov/nuccore/NZ_MBRI00000000.
  16. León-Sampedro, R.; Freitas, A.R. et al.. Whole genome shotgun project of Enterococcus faecalis (E1379A) deposited at DDBJ/ENA/GenBank (Bioproject PRJNA38695). GenBank accession number: NHNF00000000. 2017. https://www.ncbi.nlm.nih.gov/nuccore/NHNF00000000.
  17. Novais, C.; Freitas, A.R. et al.. . Enterococcus faecium strain A59_1A insertion sequence ISEf1 transposase gene, partial cds; penicillin binding protein 5 (pbp5) gene, complete cds; and monovalent cation: proton transporter (napA) gene, partial cds. GenBank accession no. KR140013. 2015. http://www.ncbi.nlm.nih.gov/nuccore/KR140013.1.
  18. Novais, C.; Freitas, A.R. et al.. Enterococcus faecium strain A8_1A insertion sequence ISEf1 transposase gene, partial cds; penicillin binding protein 5 (pbp5) gene, complete cds; and monovalent cation: proton transporter (napA) gene, partial cds. GenBank accession no. KR140011. 2015. http://www.ncbi.nlm.nih.gov/nuccore/KR140011.1.
  19. Novais, C.; Freitas, A.R. et al.. Enterococcus faecium strain A17_1B insertion sequence ISEf1 transposase gene, partial cds; penicillin binding protein 5 (pbp5) gene, complete cds; and monovalent cation: proton transporter (napA) gene, partial cds. GenBank accession no.KR140012. 2015. http://www.ncbi.nlm.nih.gov/nuccore/KR140012.1.
  20. Novais, C.; Freitas, A.R. et al.. Enterococcus faecium strain A5_2A histidinol phosphate phosphatase gene, partial cds; and penicillin binding protein 5 (pbp5) gene, complete cds". GenBank accession no. KR140010. 2015. http://www.ncbi.nlm.nih.gov/nuccore/KR1400101.
  21. Freitas, A.R. et al.. Enterococcus faecium strain AE12 vancomycin resistance operon, complete sequence. GenBank accession no. KT201628. 2015. http://www.ncbi.nlm.nih.gov/nuccore/936292976.
  22. Silveira, E.; Marques, P.; Freitas, A.R. et al.. Enterococcus faecium plasmid p_E241 bifunctional enzyme AAC/APH (aac(6')-Ie-aph(2'')-Ia) gene, partial cds; GNAT family acetyltransferase gene, complete cds; insertion sequences IS256 and IS1216 transposase (tnpA) genes, complete cds; and QacZ (qacZ) gene, complete cds.". GenBank accession no. KM083808. 2014. http://www.ncbi.nlm.nih.gov/nuccore/KM083808.1.
  23. Novais, C.; Silveira, E.; Freitas, A.R. et al.. Enterococcus faecium strain TCH323_3 penicillin-binding protein 5 (pbp5) gene, complete cds. GenBank accession no. KC479674.1. 2013. http://www.ncbi.nlm.nih.gov/nuccore/KC479674.1.
  24. Novais, C.; Silveira, E.; Freitas, A.R. et al.. Enterococcus faecium strain H196 insertion sequence ISEf1 transposase gene, partial cds; and penicillin-binding protein 5 (pbp5) gene, complete cds. GenBank accession no. KC479673.1. 2013. http://www.ncbi.nlm.nih.gov/nuccore/KC479673.1.
  25. Novais, C.; Silveira, E.; Freitas, A.R. et al.. Enterococcus faecium strain SE97F1 cell envelope-like function transcriptional attenuator common domain protein (psr) gene, partial cds; and penicillin-binding protein 5 (pbp5) gene, complete cds. GenBank accession no. KC479676.1. 2013. http://www.ncbi.nlm.nih.gov/nuccore/KC479676.1.
  26. Novais, C.; Silveira, E.; Freitas, A.R. et al.. Enterococcus faecium strain HPH6 histidinol phosphate phosphatase-like gene, partial sequence; and penicillin-binding protein 5 (pbp5) gene, complete cds. GenBank accession no. KC479675.1. 2013. http://www.ncbi.nlm.nih.gov/nuccore/KC479675.1.
  27. Novais, C.; Freitas, A.R. et al.. Enterococcus faecium strain A119 transposon Tn6000, partial sequence. GenBank accession no. JN208880. 2012. http://www.ncbi.nlm.nih.gov/nuccore/JN208880.1.
  28. Novais, C.; Freitas, A.R. et al.. . Enterococcus sp. SN373 insertion sequence IS1216 transposase gene, partial cds; cadE gene, complete sequence; tetS gene, partial sequence; and TetS gene, partial cds. GenBank accession no. JN980095. 2012. http://www.ncbi.nlm.nih.gov/nuccore/JN980095.
  29. Novais, C.; Freitas, A.R. et al.. . Enterococcus gallinarum strain F38 plasmid insertion sequence IS1216 transposase gene, partial cds; tetS gene, partial sequence; and TetS gene, partial cds. GenBank accession no. JN980091. 2012. http://www.ncbi.nlm.nih.gov/nuccore/JN980091.
  30. Novais, C.; Freitas, A.R. et al.. Enterococcus faecalis plasmid insertion sequence ISEnfa1 transposase gene, partial cds; and TetS (tetS) gene, partial cds. 2012. http://www.ncbi.nlm.nih.gov/nuccore/JN998895.
  31. Novais, C.; Freitas, A.R. et al.. Enterococcus faecalis strain WBH16 plasmid insertion sequence IS1216 transposase gene, partial cds; and TetS (tetS) gene, partial cds. GenBank accession no. JN980097. 2012. http://www.ncbi.nlm.nih.gov/nuccore/JN980097.
  32. Novais, C.; Freitas, A.R. et al.. Enterococcus sp. SN151 insertion sequence IS1216 transposase gene, partial cds; tetS gene, complete sequence; TetS and hypothetical protein genes, complete cds; and insertion sequence IS1216 transposase gene, partial cds. GenBank accession no. JN980093. 2012. http://www.ncbi.nlm.nih.gov/nuccore/JN980093.
  33. Novais, C.; Freitas, A.R. et al.. Enterococcus faecium strain E241 plasmid TetS (tetS) gene, partial cds; and insertion sequence IS1216 transposase gene, partial cds". GenBank accession no. JN980096. 2012. http://www.ncbi.nlm.nih.gov/nuccore/JN980096.
  34. Novais, C.; Freitas, A.R. et al.. Enterococcus gallinarum strain F329 plasmid insertion sequence IS1216 transposase gene, partial cds; tetS gene, partial sequence; and TetS gene, partial cds. GenBank accession no. JN980092. 2012. http://www.ncbi.nlm.nih.gov/nuccore/JN980092.
  35. Novais, C.; Freitas, A.R. et al.. Enterococcus faecalis strain SN369 plasmid insertion sequence IS1216 transposase gene, partial cds; cadE and tetS genes, complete sequence; and TetS gene, partial cds. GenBank accession no. JN980094. 2012. http://www.ncbi.nlm.nih.gov/nuccore/JN980094.
  36. Novais, C.; Silveira, E.; Freitas, A.R. et al.. Enterococcus faecium strain 529940 histidinol phosphate phosphatase-like gene, partial sequence; and penicillin-binding protein Pbp5 (pbp5) gene, complete cds. GenBank accession no. JN208883. 2011. http://www.ncbi.nlm.nih.gov/nuccore/JN208883.1.
  37. Novais, C.; Silveira, E.; Freitas, A.R. et al.. Enterococcus faecium strain SN446 insertion sequence ISEfa11, complete sequence. GenBank accession no. JN208887. 2011. http://www.ncbi.nlm.nih.gov/nuccore/JN208887.1.
  38. Novais, C.; Silveira, E.; Freitas, A.R. et al.. Enterococcus faecium strain TCGE70411_2 PBP5 synthesis repressor-like (psr) gene, partial sequence; and ISEfm1 transposase, acetyltransferase, histidinol phosphate phosphatase, and penicillin-binding protein Pbp5 (pbp5) genes, complete cds. GenBank accession no. JN208888. 2011. http://www.ncbi.nlm.nih.gov/nuccore/JN208888.1.
  39. Novais, C.; Silveira, E.; Freitas, A.R. et al.. Enterococcus faecium strain TCGEE49_1 insertion sequence ISEfa11, complete sequence. GenBank accession no. JN208884. 2011.
  40. Novais, C.; Silveira, E.; Freitas, A.R. et al.. Enterococcus faecalis strain C386 transposon Tn6000, complete sequence. GenBank accession no. JN208881. 2011. http://www.ncbi.nlm.nih.gov/nuccore/JN208881.
  41. Novais, C.; Silveira, E.; Freitas, A.R. et al.. Enterococcus faecium strain TCGE_E4.1 histidinol phosphate phosphatase-like gene, partial sequence; and penicillin-binding protein Pbp5 (pbp5) gene, complete cds. GenBank accession no. JN208889. 2011. ). http://www.ncbi.nlm.nih.gov/nuccore/JN208889.1.
  42. Novais, C.; Silveira, E.; Freitas, A.R. et al.. Enterococcus faecium strain TCGESN71_1 cell cycle protein FtsW (fstW), PBP 5 synthesis repressor (psr), and penicillin-binding protein Pbp5 (pbp5) genes, complete cds. GenBank accession no. JN208885. 2011. https://www.ncbi.nlm.nih.gov/nuccore/JN208885.
  43. Novais, C.; Silveira, E.; Freitas, A.R. et al.. Enterococcus faecium strain SN194 insertion sequence ISEf1, complete sequence. GenBank accession no. JN208886. 2011. http://www.ncbi.nlm.nih.gov/nuccore/JN208886.1.
  44. Novais, C.; Silveira, E.; Freitas, A.R. et al.. Enterococcus faecium strain 164306 insertion sequence ISEf1, complete sequence. GenBank accession no. JN208882. 2011. http://www.ncbi.nlm.nih.gov/nuccore/JN208882.1.
  45. Laverde-Gomez, J.A.; van Schaik, W.; Freitas, A.R. et al.. Enterococcus faecium strain 64/3xUW2774 plasmid pLG1 (281.02 Kb). GenBank accession numbers HM565168-HM565236. 2011. https://www.ncbi.nlm.nih.gov/nuccore/HM565236.
  46. Freitas, A.R. et al.. Enterococcus faecium strain Ef80 plasmid putative glycoside hydrolase (hylEfm) gene, complete cds. GenBank accession number HM043740. 2010. https://www.ncbi.nlm.nih.gov/nuccore/HM043740.
  47. Freitas, A.R. et al.. Enterococcus faecium strain E1438 plasmid putative glycoside hydrolase (hylEfm) gene, complete cds. GenBank accession number HM043741. 2010. https://www.ncbi.nlm.nih.gov/nuccore/HM043741.
  48. Freitas, A.R. et al.. Enterococcus faecium strain Efm42 plasmid putative glycoside hydrolase (hylEfm) gene, complete cds. GenBank accession number HM043742. 2010. http://www.ncbi.nlm.nih.gov/nuccore/HM043742.
  49. Freitas, A.R. et al.. Enterococcus faecium strain Efm49 plasmid putative glycoside hydrolase (hylEfm) gene, complete cds. GenBank accession number HM043743. 2010. http://www.ncbi.nlm.nih.gov/nuccore/HM043743.
  50. Freitas, A.R. et al.. Enterococcus faecium strain 15/02 plasmid putative glycoside hydrolase (hylEfm) gene, complete cds. GenBank accession number HM043744. 2010. http://www.ncbi.nlm.nih.gov/nuccore/HM043744.
Preprint
  1. Rebelo, Andreia; Duarte, Bárbara; Freitas, Ana R.; Almeida, Agostinho; Azevedo, Rui; Pinto, Edgar; Peixe, Luísa; Antunes, Patricia; Novais, Carla. "Uncovering the Effects of Copper Feed Supplementation on the Selection of Copper-Tolerant and Antibiotic-Resistant Enterococcus in Poultry Production for Sustainable Environmental Practices". 2023. http://dx.doi.org/10.2139/ssrn.4435765.
    10.2139/ssrn.4435765
  2. Ana P. Tedim; Ana C. Almeida-Santos; Val F. Lanza; Carla Novais; Teresa M. Coque; Ana R. Freitas; Luísa Peixe. "Bacteriocin Distribution Patterns inEnterococcus faeciumandEnterococcus lactis:Bioinformatic Analysis Using a Tailored Genomics Framework". 2023. https://doi.org/10.1101/2023.11.13.566347.
    10.1101/2023.11.13.566347
  3. Chaguza, Chrispin; Pöntinen, Anna K.; Top, Janetta; Arredondo-Alonso, Sergio; Freitas, Ana R.; Novais, Carla; Torres, Carmen; et al. "The population-level impact of Enterococcus faecalis genetics on intestinal colonisation and extraintestinal infection". 2022. http://dx.doi.org/10.1101/2022.09.26.509451.
    10.1101/2022.09.26.509451
  4. Pereira, Ana P.; Antunes, Patrícia; Willems, Rob; Corander, Jukka; Coque, Teresa M.; Peixe, Luísa; Freitas, Ana R.; Novais, Carla. "Evolution of chlorhexidine susceptibility and of the EfrEF operon among Enterococcus faecalis from diverse environments, clones and time spans". 2022. http://dx.doi.org/10.1101/2022.01.27.478125.
    10.1101/2022.01.27.478125
  5. Tedim, Ana P.; Lanza, Val F.; Rodríguez, Concepción M.; Freitas, Ana R.; Novais, Carla; Peixe, Luísa; Baquero, Fernando; Coque, Teresa M.. "Fitness cost of vancomycin-resistant Enterococcus faecium plasmids associated with hospital infection outbreaks". 2021. http://dx.doi.org/10.1101/2021.01.27.428397.
    10.1101/2021.01.27.428397
  6. Freitas, Ana R.; Tedim, Ana P.; Novais, Carla; Peixe, Luísa. "Comparative genomics of global optrA-carrying Enterococcus faecalis uncovers common genetic features and a chromosomal hotspot foroptrAacquisition". 2019. http://dx.doi.org/10.1101/785295.
    10.1101/785295
  7. Duarte, Bárbara; Pereira, Ana P.; Freitas, Ana R.; Coque, Teresa M.; Hammerum, Anette M.; Hasman, Henrik; Antunes, Patrícia; Peixe, Luísa; Novais, Carla. "Identification of 2CS-CHXToperon signature of chlorhexidine tolerance amongEnterococcus faecium". 2019. http://dx.doi.org/10.1101/704346.
    10.1101/704346
Thesis / Dissertation
  1. Freitas, Ana R. "Ecology and Evolution of Antimicrobial Resistance in Enterococcus: A multilayered molecular approach with emphasis in plasmid diversity". PhD, Universidade do Porto Faculdade de Farmácia, 2011. https://repositorio-aberto.up.pt/handle/10216/63801.

Other

Other output
  1. UCIBIO news. Dog food sold across Europe contains antibiotic-resistant bacteria, including “superbugs” found in hospital patients.. 2021. Freitas, Ana R. https://www.requimte.pt/ucibio/news/dog-food-sold-across-europe-contains-antibiotic-resistant-bacteria-including-superbugs-found.
  2. National press release. Alimentos crus para cães são "fonte de bactérias resistentes a antibióticos", SIC Notícias Alimentos crus para cães são "fonte de bactérias resistentes a antibióticos", diz estudo, 24Sapo Alimentos crus para cães são “fonte de bactérias resistentes a antibióticos, Visão Cuidado com a alimentação do cão: o melhor amigo do homem pode estar a espalhar superbactérias, DN Alimentos crus par. 2021. Freitas, Ana R. https://sicnoticias.pt/saude-e-bem-estar/2021-07-12-Alimentos-crus-para-caes-sao-fonte-de-bacterias-resistentes-a-antibioticos-edf6fc4d.
  3. International press release. The Guardian; The Telegraph; Euronews; Genetic Engineering & Biotechnology News; HealthDay.... 2021. Freitas, Ana R. https://www.theguardian.com/society/2021/jul/10/raw-dog-food-may-be-fuelling-spread-of-antibiotic-resistant-bacteria; https://www.euronews.com/g https://www.telegraph.co.uk/news/2021/07/10/nightmare-scenario-potentially-untreatable-superbug-passed-dogs/;.
  4. UCIBIO News. Nature Communications study maps full evolutionary journey of a leading hospital pathogen. 2021. Freitas, Ana R. https://www.requimte.pt/ucibio/news/nature-communications-study-maps-full-evolutionary-journey-leading-hospital-pathogen.
  5. UCIBIO news. 1st Workshop MicroMundo@UPorto. 2019. Freitas, Ana R. https://www.requimte.pt/ucibio/news/1st-workshop-micromundouporto.
  6. UCIBIO news. Ana R. Freitas awarded an ESCMID Observership. 2019. Freitas, Ana R. https://www.requimte.pt/ucibio/news/ana-r-freitas-awarded-escmid-observership-2018.
  7. UCIBIO news. BacT_drugs lab implements a global citizen science project - MicroMundo - in Portugal. 2018. Freitas, Ana R. https://www.requimte.pt/ucibio/news/bactdrugs-lab-implements-global-citizen-science-project-micromundo-portugal.
  8. UCIBIO news. Ana R. Freitas is one of the two awardees of the international 2018 Travel Awards promoted by the Pathogens journal. 2018. Freitas, Ana R. https://www.requimte.pt/ucibio/news/ana-r-freitas-one-two-awardees-international-2018-travel-awards-promoted-pathogens-journal.
  9. UCIBIO news. Ana Freitas’s publication highlighted as an Editor’s Choice in Journal of Antimicrobial Chemotherapy. 2017. Freitas, Ana R. https://www.requimte.pt/ucibio/news/ana-freitass-publication-highlighted-editors-choice-journal-antimicrobial-chemotherapy.
Activities

Oral presentation

Presentation title Event name
Host (Event location)
2024/11/15 Resistência Antimicrobiana: Uma visão multidisciplinar "One Health" (online) (BY INVITATION) Mês da Ciência
Associação de Estudantes da Escola Superior de Tecnologia da Saúde de Coimbra
2024/04/24 Staphylococcus aureus: espetro de atividade, mecanismo de ação e resistência a macrólidos, daptomicina e oxazolidinonas. Impacto “Uma Só Saúde” (BY INVITATION) Antibiograma 2024: Desafios atuais na análise de antibiogramas (online)
RedEMC - Rede de Educação Médica Continuada
2024/04/10 Resistência Antimicrobiana: Uma visão multidisciplinar “Uma Só Saúde” (BY INVITATION) IV Jornadas de Ciências Biomédicas do IUCS-CESPU
Instituto Universitário de Ciências da Saúde
2023/09/18 O projeto de Ciência Cidadã MicroMundo. A 1ª edição do MicroMundo@IUCS-CESPU You can be part of the change: Improving literacy about Antimicrobial Resistance and Science Communication
Instituto Universitário de Ciências da Saúde (Gandra, Portugal)
2023/05/24 Detection of bacteria resistant to last-line antibiotics in dog foods commercialized in Europe: trend or threat? (BY INVITATION) Seminários do Programa Doutoral em Ciências Biomédicas - 7ª. Edição
Instituto Universitário Ciências da Saúde
2023/04/11 A One Health perspective on Antimicrobial Resistance: from diagnostics to global surveillance and policymaking (BY INVITATION) 3rd TOXRUN TalkScience e-zine (online)
TOXRUN - Toxicology Research Unit
2023/04/07 Novel insights into healthy humans’ faecal carriage of enterococci: Enterococcus lactis is as a dominant highly bacteriocinogenic species II TOXRUN International Congress 2023: No Boundaries for Toxicology: One Health, One Society, One Planet
TOXRUN - Toxicology Research Unit (Porto, Portugal)
2023/03/16 Transferable linezolid resistance in staphylococci and enterococci. In: Pre-ECCMID Day on AMR - old problems, new challenges - Emerging resistance mechanisms spreading across sectors (INVITED as a Keynote Speaker) 33rd European Congress of Clinical Microbiology & Infectious Diseases
European Society of Clinical Microbiology and Infectious Diseases (Denmark)
2022/10/27 Resistência Antimicrobiana - Exemplos relevantes da pandemia silenciosa do século XXI (BY INVITATION) Dia do laboratório de Microbiologia 2022
Faculdade de Farmácia do Porto (Porto, Portugal)
2022/10/17 Diferenciação precisa de Enterococcus faecium e Enterococus lactis em fezes de humanos saudáveis indica E. lactis como espécie predominante (vídeo de ciência curto) Microbiologia 2022
Sociedade Portuguesa de Microbiologia (Portugal)
2022/09 First comprehensive reconstruction of the plasmidome of Enterococcus faecalis 13th International Meeting on Microbial Epidemiological Markers (IMMEM XIII)
European Society of Clinical Microbiology and Infectious Diseases (ESCMID) (Bath, UK)
2022/04/21 Glicopeptídeos, lipopeptídeos e polipeptídeos (BY INVITATION) CURSO APFH 2022 | ANTIMICROBIANOS (online)
Associação Portuguesa de Farmacêuticos Hospitalares (Portugal)
2022/04 Vancomycin-resistant Enterococcus faecium causing hospital infections in Porto, Portugal (2009-2020): a retrospective analysis. 32nd European Congress of Clinical Microbiology and Infectious Diseases
European Society of Clinical Microbiology and Infectious Diseases (ESCMID) (Lisbon, Portugal)
2021/11/23 Analysis of vancomycin-resistant Enterococcus faecium causing hospital infections in Porto, Portugal, over the last decade (online) Microbiotec21 - Congress of Microbiology and Biotechnology 2021 (online)
Sociedade Portuguesa de Microbiologia (Portugal)
2021/11/17 IR Bactyping Sessão de apresentação pública dos projetos vencedores do BIP Proof
Universidade do Porto Inovação
2021/11 IR Bactyping, the next cornerstone for Klebsiella pneumoniae strain typing towards real-time infection control Microbiotec21 - Congress of Microbiology and Biotechnology 2021 (online)
Sociedade Portuguesa de Microbiologia (Portugal)
2021/09/24 Presentation of UCIBIO TL3 (Safety in Human &Envirenmental Health) and highlights/aims of BacTdrugs research group (PRESENTING AUTHOR BY INVITATION) Encontro i4HB
FCT-Nova (Portugal)
2021/07/15 Truncated EfrEF operons highly limit the growth of human Enterococcus faecalis ST40 populations under chlorhexidine stress World Enterococcus Day (online)
2021/07 Truncated EfrEF operons highly limit the growth of human Enterococcus faecalis ST40 populations under chlorhexidine stress 31st European Congress of Clinical Microbiology and Infectious Diseases (online)
European Society of Clinical Microbiology and Infectious Diseases (ESCMID)
2021/07 In vitro activity of Quaternary Ammonium Compounds and occurrence of tolerance associated genes among Enterococcus faecalis from diverse origins and timespans (mini-oral) 31st European Congress of Clinical Microbiology and Infectious Diseases (online)
European Society of Clinical Microbiology and Infectious Diseases (ESCMID)
2021/04/27 Communication strategies: Explaining the Antibiotics Resistance to High School Students in a One Health Perspective. Flash oral presentation. Simposio MicroMundo 2021 (online)
(Spain)
2020/11 Occurrence of copper tolerant and antibiotic-resistant Enterococcus faecium in poultry farms using feed supplemented with inorganic or organic copper forms (distinguished as the BEST ORAL PRESENTATION and research project in the category of Integrated Master in Pharmaceutical Sciences) SIFFUP-Simpósio de Investigação FFUP
Faculdade de Farmácia do Porto (Porto, Portugal)
2020/09/18 Fundamentals of Whole Genome Sequencing: an overview for microbial diagnostics (theoretical). Whole Genomic Sequencing for microbial diagnostics (practical). PRESENTING AUTHOR BY INVITATION Summer School 2020: Interdisciplinary approaches to control infectious diseases
Faculdade de Farmácia do Porto
2020/05 Dispersion of arsenic tolerance genes among antibiotic-resistant Enterococcus spp from several sources and clonal lineages (distinguished as the BEST ORAL PRESENTATION) One Health EJP Annual Scientific Meeting 2020
2019/11/28 Widespread of ampicillin multidrug-resistant Enterococcus faecium in raw chicken meat (distinguished as the BEST ORAL PRESENTATION and research project in the category of Integrated Master in Pharmaceutical Sciences).
SIFFUP-Simpósio de Investigação (Porto, Portugal)
2019/10/04 Workshop/Curso Novos métodos na identificação e diagnóstico bacteriológico. CO-PRESENTING AUTHOR BY INVITATION
XXIII Encontro Científico APAC (Tomar, Portugal)
2019/04 Linezolid-resistant Enterococcus faecium carrying identical Tn6246::fexB-poxtA in humans and bovine from different continents. PRESENTING AUTHOR
29th European Congress Clinical Microbiology and Infectious Diseases (ECCMID) (Amsterdam, Netherlands)
2018/11 MicroMundo: Combate à Resistência de Antibióticos. PRESENTING AUTHOR BY INVITATION
XIII Congresso Científico AEFFUP (Associação Nacional das Farmácias, Porto, Portugal)
2018/09 Advances in the establishment of Enterococcus faecium key virulence factors. In the scientific session -Safety in Human and Environmental Health- PRESENTING AUTHOR BY INVITATION
UCIBIO Annual Meeting (Caparica, Portugal)
2018/04 From farm to fork: dissemination of Tn554::fexA-optrA in linezolid-resistant Enterococcus faecalis clones from chicken faeces and meat in Tunisia. PRESENTING AUTHOR
28th European Congress Clinical Microbiology and Infectious Diseases (ECCMID) (Madrid, Spain)
2015 Filling the map for antimicrobial resistance in sub-Saharan Africa: ampicillin resistant enterococci from non-clinical sources of Angola IJUP – 8º Encontro da Investigação Jovem da Universidade do Porto
Universidade do Porto (Porto , Portugal)
2014/05 Antibiotic resistance, copper and mercury tolerance genes are carried by RepA-N pLG1-like megaplasmids among Enterococcus from several origins and clones 24th European Congress Clinical Microbiology and Infectious Diseases (ECCMID)
(Barcelona, Spain)
2014 Screening for Virulence Factors in Swine Enterococcus faecium Strains with Zoonotic Potential IJUP – 7º Encontro da Investigação Jovem da Universidade do Porto
Universidade do Porto (Porto , Portugal)
2013 Rainbow trouts containing enterococcus with virulence factors, antibiotic and biocide resistance genes: can your dinner be a matter of concern? IJUP- 6º Encontro da Investigação Jovem da Universidade do Porto
Universidade do Porto (Porto , Portugal)
2012 Occurrence of antibiotic-resistant enterococci from antibiotic-free trout aquacultures 22nd European Congress of Clinical Microbiology and Infectious Diseases (ECCMID)
(London, United Kingdom)
2011 Enterococcus spp.: comensal ou patogénico? BY INVITATION
Seminar of Clinical Microbiology (Faculdade de Ciências da Saúde, Universidade Fernando Pessoa, Porto, Portugal)
2011 Spread of vancomycin-resistant among Enterococcus faecalis: the influence of pAD1 and Inc18-plasmids (1987-2005) 21th European Congress of Clinical Microbiology and Infectious Diseases (ECCMID)
(Milan, Italy)
2011 Fitness cost of widely disseminated conjugative plasmids carrying Tn1546-vanA among Enterococcus faecium and Enterococcus faecalis 21th European Congress of Clinical Microbiology and Infectious Diseases (ECCMID)
(Italy, Italy)
2011 Tracking antibiotic resistance along the Silk Road 21th European Congress of Clinical Microbiology and Infectious Diseases (ECCMID)
(Milan, Italy)
2011 Diversidad y evolución de Enterococcus faecium-vanA ST78 en diferentes países (1991-2008) XV Reunión de la Sociedad Española de Enfermedades Infecciosas y Microbiología Clínica (SEIMC)
(Malaga, Spain)
2011 Coste biológico de plásmidos de resistencia a la vancomicina (Tn1546-vanA) en Enterococcus faecium y Enterococcus faecalis XV Reunión de la Sociedad Española de Enfermedades Infecciosas y Microbiología Clínica (SEIMC)
(Malaga, Spain)
2010 O impacto da transferência genética horizontal em Enterococcus. BY INVITATION Course - Clones, genes e elementos genéticos móveis: peças do puzzle da resistência a antibióticos
FFUP Doctoral Programme (Faculdade de Farmácia do Porto, Portugal)
2010 Influence of pAD1 and Inc18-plasmids in the worldwide spread of vancomcycin-resistant Enterococcus faecalis outbreak strains (1987-2005) 3rd ASM Conference on Enterococci
(Portland, United States)
2010 Diseminación global de megaplásmidos portadores de hylEfm en cepas internacionales de Enterococcus faecium CC17. PRESENTING AUTHOR XIV Reunión de la Sociedad Española de Enfermedades Infecciosas y Microbiología Clínica (SEIMC)
(Barcelona, Spain)
2010 Estructura poblacional de Enterococcus faecium resistente a vancomicina (EfmRV) en hospitales españoles (1996-2010) XIV Reunión de la Sociedad Española de Enfermedades Infecciosas y Microbiología Clínica (SEIMC)
(Barcelona, Spain)
2009/08 The impact of plasmids in the evolution of CC17 Enterococcus faecium. PRESENTING AUTHOR ACE - EU project WP2 meeting - Sixth Framework Programme on Research, Technological Development and demonstration
(Warsaw, Poland)
2009 Diversity of hyl plasmids among international CC17 Enterococcus faecium strains (1992-2009). PRESENTING AUTHOR ESCMID Conference on Enterococci: from Animals to Man
(Barcelona, Spain)
2009 Population structure of international vancomycin resistant Enterococcus faecium (VREfm) strains causing outbreaks. PRESENTING AUTHOR ESCMID Conference on Enterococci: from Animals to Man
(Barcelona, Spain)
2009 Portuguese piggeries as reservoir of antibiotic multi-resistant enterococci/ International spread of vancomycin-resistant Enterococcus faecium (CC17, CC5) and Enterococcus faecalis CC2 among animals and humans 1º Encontro Parcerias para a Investigação
(Vairão, Portugal)
2008/12 Summary of a detailed plasmid analysis on Enterococcus isolates from hospitals of different countries. PRESENTING AUTHOR ACE-EU project WP3/4 meeting - Sixth Framework Programme on Research, Technological Development and demonstration
(Copenhagen, Denmark)
2008/04 Plasmid characterization of vancomycin resistant Enterococcus faecium and Enterococcus faecium strains causing outbreaks in different countries. PRESENTING AUTHOR ACE-EU project Annual meeting - Sixth Framework Programme on Research, Technological Development and demonstration
(Barcelona, Spain)
2008 Estructura poblacional y análisis molecular comparativo de Enterococcus faecalis resistente a vancomicina asociados a brotes nosocomiales en Europa y América. AWARD of best oral presentation XIII Reunión de la Sociedad Española de Enfermedades Infecciosas y Microbiología Clínica (SEIMC)
(Madrid, Spain)
2007/10 Characterization of vancomycin-resistant plasmids in clinical enterococci isolates from Portugal. PRESENTING AUTHOR ACE-EU project WP3 meeting - Sixth Framework Programme on Research, Technological Development and demonstration
(Madrid, Spain)
2007 Multi-drug resistant enterococci among Portuguese swine after growth promoter ban 17th European Congress of Clinical Microbiology and Infectious Diseases (ECCMID)
(Munchen, Germany)

Supervision

Thesis Title
Role 		Degree Subject (Type)
Institution / Organization
2023/12 - Current Cultural and biochemical analysis of key bacterial indicators for calculating Postmortem Interval
Supervisor of Maria João Teixeira
 Mestrado em Ciências Forenses (Master)
Universidade do Porto Faculdade de Medicina, Portugal
2023/10 - Current Phenotypic and genotypic characterization of contemporary Enterococcus faecium from hospital infections
Supervisor of Beatriz Leite Antunes
 Estágio de Investigação em Ciências Biomédicas (Other)
Instituto Universitário de Ciências da Saúde, Portugal
2021/04 - Current Understanding the plasmidome and bacteriocinome of human contemporary Enterococcus spp. for future targeted therapies against multidrug-resistant infections (FCT fellowship UI/BD/151317/2021 )
Supervisor of Ana Cristina Santos
 PhD program in Pharmaceutical Sciences (PhD)
Universidade do Porto Faculdade de Farmácia, Portugal
2019/11/01 - 2024/06/17 Adaptation of Enterococcus to dynamic environments: impact of biocides on the epidemiology of tolerant populations and resistance to antibiotics (FCT fellowship SFRH/BD/144401/2019)
Co-supervisor of Ana Paula Pereira
PhD program in Pharmaceutical Sciences (PhD)
Universidade do Porto Faculdade de Farmácia, Portugal
2021/12 - 2023/12/12 Bacterial Mapping for Postmortem Interval Calculation (Masther thesis)
Supervisor of Ana Cláudia Coelho Ferreira
Mestrado em Ciências Forenses (final grade: 20/20) (Master)
Instituto Universitário de Ciências da Saúde, Portugal
2022/10 - 2023/07/19 Nasal colonization by Methicillin-Resistant Staphylococcus aureus in Health Sciences students and analysis of risk factors
Supervisor of Luís Miguel Gomes Sampaio
 Metodologia e Projeto em Investigação Forense (final grade: 20/20) (Other)
Instituto Universitário de Ciências da Saúde, Portugal
2022/10 - 2023/07/19 Perfis de resistência a antibióticos de Escherichia coli em bovinos de raças leiteiras e autóctones numa abordagem “Uma Só Saúde”
Co-supervisor of Ana Beatriz da Silva Dias
 Metodologia e Projeto em Investigação Forense (final grade: 19/20) (Other)
Instituto Universitário de Ciências da Saúde, Portugal
2021/10 - 2022/09/26 Towards the accurate identification of enterococci species of human origin for forensic applications
Supervisor of Maria João Teixeira
 Metodologia e Projeto em Investigação Forense (final grade: 19/20) (Other)
Instituto Universitário de Ciências da Saúde, Portugal
2021/04/01 - 2021/10/11 Enterococcus spp. as a Producer and Target of Bacteriocins: A Double-Edged Sword in the Antimicrobial Resistance Crisis Context (PhD Seminar)
Supervisor of Ana Cristina Santos
 Seminário integrado no Programa Doutoral em Ciências Farmacêutcias (PhD) (final grade: 19/20)
Universidade do Porto Faculdade de Farmácia, Portugal
2021/02/01 - 2021/07/08 Caraterização de Enterococcus spp. provenientes de pacientes hospitalizados antes e em diferentes fases da pandemica Covid-19
Supervisor of Maria Cabral
 Estágio em Bioquímica da Faculdade de Ciências do Porto (Degree)
Universidade do Porto Faculdade de Farmácia, Portugal

Universidade do Porto Faculdade de Ciências, Portugal
2019/09 - 2020/12/10 Caracterização de Enterococcus resistentes a antibióticos oriundos de alimentos para animais de estimação (Master thesis) https://sigarra.up.pt/ffup/pt/teses.teses_orientador?p_docente=555152
Supervisor of Liliana Finisterra
 Mestrado em Controlo de Qualidade (Master)
Universidade do Porto Faculdade de Farmácia, Portugal
2019/09 - 2020/09/11 Qualidade e segurança microbiológica de alimentos disponíveis no mercado para animais de estimação (Seminar)
Supervisor of Liliana Finisiterra
 Seminário integrado no Mestrado de Controlo de Qualidade (Other)
Universidade do Porto Faculdade de Farmácia, Portugal
2019/11 - 2020/02 Multidrug-resistant high-risk Enterococcus faecium clones: can we really define them? (PhD Seminar)
Co-supervisor of Ana Paula Pereira
Seminário integrado no Programa Doutoral em Ciências Farmacêutcias (PhD)
Universidade do Porto Faculdade de Farmácia, Portugal
2016 - 2020 Antimicrobial resistance surveillance in Enterococcus from different origins
Co-supervisor of Bárbara Duarte
 Free Research (Other)
Universidade do Porto Faculdade de Farmácia, Portugal
2019/01 - 2019/07 Resistência à ampicilina em Enterococcus faecium obtidos de carcaças de frangos (Mestrado Integrado em Ciências Farmacêuticas )
Co-supervisor of Carolina Ferreira
 Experimental research associated with Project I Curricular Unit (Scientific initiation)
Universidade do Porto Faculdade de Farmácia, Portugal
2018/09/10 - 2018/10/19 Typing of Enterococcus faecalis resistant to vancomycin from Brasil
Co-supervisor of Emília Oliveira
 Mestrado em Ciências Biológicas. Intercâmbio com Universidade Federal do Rio Grande do Norte, Brasil (Master)
Universidade do Porto Faculdade de Farmácia, Portugal

Universidade Federal do Rio Grande do Norte, Brazil
2018/06 - 2018/07 Study of enterococci resistant to clinical relevant antibiotics in poultry meat samples
Co-supervisor of Christopher Scholes
 Erasmus Program (Other)
Universidade do Porto Faculdade de Farmácia, Portugal

University of Strathclyde, United Kingdom
2015/05 - 2018/01 Characterization of Enterococcus sp. obtained from different origins in Tunisia. Original thesis: Étude des populations des entérocoques (Enterococcus spp) d’origine animale et environnementale : Pathologie, résistance aux antibiotiques et clonalité (Supervisor during three training periods in Portugal)
Supervisor of Houyem Elghaieb
 Foreign PhD Program in Biological Sciences (Microbiology) (PhD)
Université de Tunis El Manar, Tunisia

Universidade do Porto Faculdade de Farmácia, Portugal
2017 - 2017 What are we missing when epidemiological cut-off are not used to evaluate ampicillin phenotypes among Enterococcus faecium? (Experimental research associated with Project I Curricular Unit)
Co-supervisor of Ana Paula Pereira
 Mestrado Integrado em Ciências Farmacêuticas (Scientific initiation)
Universidade do Porto Faculdade de Farmácia, Portugal
2016/06 - 2016/07 Impact of anaerobiosis in the transfer of ampicillin resistance among Enterococcus faecium
Co-supervisor of Chloe Allison
 Erasmus Program (Other)
Universidade do Porto Faculdade de Farmácia, Portugal

University of Strathclyde, United Kingdom
2016/02 - 2016/07 Estudo dos fatores que promovem a transferência horizontal da resistência à ampicilina em Enterococcus faecium: optimização de um protocolo
Co-supervisor of Flávia Mendes
 Estágio em Bioquímica da Faculdade de Ciências do Porto (Scientific initiation)
Universidade do Porto Faculdade de Farmácia, Portugal

Universidade do Porto Faculdade de Ciências, Portugal
2015/10 - 2016/05 Characterization of multidrug-resistant Klebsiella pneumoniae and Enterococcus faecium isolates by spectroscopic and genotypic methods
Co-supervisor of Jan Bavlovic
Erasmus Program (Other)
Univerzita Karlova Farmaceutická Fakulta v Hradci Králové, Czech Republic

Universidade do Porto Faculdade de Farmácia, Portugal
2016 - 2016 Temporal shifts of clinical vancomycin-resistant Enterococcus faecium (Experimental research associated with Project I Curricular Unit)
Co-supervisor of Sara Aguiar
 Mestrado Integrado em Ciências Farmacêuticas (Scientific initiation)
Universidade do Porto Faculdade de Farmácia, Portugal
2016 - 2016 High rates of colonisation by ampicillin-resistant enterococci in residents of long-term care facilities in Porto, Portugal
Co-supervisor of Ana Paula Pereira
 Free research not associated with a degree (Scientific initiation)
Universidade do Porto Faculdade de Farmácia, Portugal
2015 - 2016 Virulence genes screening in Enterococcus faecium from different origins and countries
Supervisor of Sara Aguiar
 Free research not associated with a degree (Scientific initiation)
Universidade do Porto Faculdade de Farmácia, Portugal
2015 - 2015 Molecular characterization of vancomycin-resistant Enterococcus faecium plasmids from wild birds (Supervisor in the training period in Portugal)
Supervisor of Veronika Oravcová
Foreign PhD Program (PhD)
Veterinární a farmaceutická univerzita Brno, Czech Republic

Universidade do Porto Faculdade de Farmácia, Portugal
2014 - 2014 Extended Virulence Profile of Enterococcus faecium from Swine (Europe/USA, 1998-2008) (Experimental research associated with Project I Curricular Unit)
Co-supervisor of Elsa Martins
 Mestrado Integrado em Ciências Farmacêuticas (Scientific initiation)
Universidade do Porto Faculdade de Farmácia, Portugal
2011 - 2011 Molecular characterization of vancomycin-resistant Enterococcus spp. from animals: do they share identity with human enterococcal isolates? (Experimental research associated with Project I Curricular Unit)
Co-supervisor of Ana Isabel Cunha
Mestrado Integrado em Ciências Farmacêuticas (Scientific initiation)
Universidade do Porto Faculdade de Farmácia, Portugal
2011 - 2011 Probiotics: a therapeutics in evolution (3-months Community Pharmacy Internship and final monograph)
Supervisor of Sylvie Certal
Mestrado Integrado em Ciências Farmacêuticas (Master)
Universidade do Porto Faculdade de Farmácia, Portugal

Farmácia do Campo, Portugal
2009 - 2011 Population structure of vancomycin-resistant Enterococcus sp. from animal origin
Supervisor of Ana Isabel Cunha
 Free research not associated with a degree (Scientific initiation)
Universidade do Porto Faculdade de Farmácia, Portugal
2010 - 2010 Venous Insufficiency: from the feeling of tired legs to chronic pathology (3-months Community Pharmacy Internship and final monograph)
Supervisor of Vanessa Azevedo
 Mestrado Integrado em Ciências Farmacêuticas (Master)
Universidade do Porto Faculdade de Farmácia, Portugal

Farmácia do Campo, Portugal
2010 - 2010 Atopic Dermatitis (3-months Community Pharmacy Internship and final monograph)
Supervisor of Sofia Mateus
 Mestrado Integrado em Ciências Farmacêuticas (Master)
Universidade do Porto Faculdade de Farmácia, Portugal

Farmácia do Campo, Portugal
2008 - 2009 In vitro activity of tigecycline in Enterococcus sp. from different origins
Supervisor of Rosa Alves Correia
Free research not associated with a degree (Scientific initiation)
Universidade do Porto Faculdade de Farmácia, Portugal
2008 - 2009 In vitro activity of tigecycline in Enterococcus sp. from different origins
Supervisor of Márcia Monteiro
 Free research not associated with a degree (Scientific initiation)
Universidade do Porto Faculdade de Farmácia, Portugal
2008 - 2009 Characterization of plasmids in vancomycin-resistant Enterococcus faecium from Portuguese hospitals (1997-2007)
Supervisor of João Pires
 Free research not associated with a degree (Scientific initiation)
Universidade do Porto Faculdade de Farmácia, Portugal
2008 - 2009 Molecular characterization of Enterococcus sp. isolates from Portuguese hospitals: populational structure and plasmid diversity
Supervisor of Rosa Maria Silva
Free research not associated with a degree (Scientific initiation)
Universidade do Porto Faculdade de Farmácia, Portugal

Event organisation

Event name
Type of event (Role) 		Institution / Organization
2024 - 2024 Organizer of the ESCMID Food- and Water-borne Infections Study Group (EFWISG) seminar (online): "Food Safety and One Health: transmission of AMR and potentially uropathogenic Escherichia coli (UPEC) from animal sources" (2024/01/16 - 2024/01/16)
Seminar (Member of the Organising Committee)
 European Society of Clinical Microbiology and Infectious Diseases, Switzerland
2023/06/01 - 2023/09/18 Seminar "YOU CAN BE PART OF THE CHANGE: IMPROVING LITERACY ABOUT ANTIMICROBIAL RESISTANCE AND SCIENCE COMMUNICATION" accepted to be part of the International Microorganism Day commemorations (https://www.internationalmicroorganismday.org/blog/imd2023-portugal) (2023/09/18 - 2023/09/18)
Seminar (Member of the Organising Committee)
 Instituto Universitário de Ciências da Saúde, Portugal
2023/09/15 - 2023/09/15 Organizer of the ESCMID Food- and Water-borne Infections Study Group (EFWISG) seminar (online): "The use of genomic approaches for population studies and outbreak surveillance of diarrheagenic Escherichia coli" (2023/09/15 - 2023/09/15)
Seminar (Member of the Organising Committee)
 European Society of Clinical Microbiology and Infectious Diseases, Switzerland
2022/07 - 2023/09/14 Member of the organizing committee of the 6th International Conference on Enterococci (ICE2023) (2023/09/11 - 2023/09/14)
Conference (Member of the Organising Committee)
2022/09/20 - 2022/09/20 Organizer of the 3rd ESCMID Food- and Water-borne Infections Study Group (EFWISG) webinar (online): "Genomic surveillance of viral pathogens: are we prepared for emergent global threats across One Health" (2022/09/20 - 2022/09/20)
Seminar (Member of the Organising Committee)
 European Society of Clinical Microbiology and Infectious Diseases, Switzerland
2021/01/11 - 2022/04/08 Member of the organizing committee of the I TOXRUN Internacional Congress (2022/04/07 - 2022/04/08)
Congress (Member of the Organising Committee)
 Cooperativa de Ensino Superior Politécnico e Universitário, Portugal
2022/02/01 - 2022/03/15 Organizer of the 2nd ESCMID Food- and Water-borne Infections Study Group (EFWISG) webinar (online): "Genomics for the safety assessment of food microorganisms: the Enterococcus faecium case" (2022/03/15 - 2022/03/15)
Seminar (Member of the Organising Committee)
 European Society of Clinical Microbiology and Infectious Diseases, Switzerland
2021/09/01 - 2021/12/09 Co-organizer of the 1st ESCMID Food- and Water-borne Infections Study Group (EFWISG) symposium (online): "Building up WGS-based surveillance for food-borne pathogens in Europe - a look back and a look forward" (2021/12/09 - 2021/12/09)
Symposium (Co-organisor)
 European Society of Clinical Microbiology and Infectious Diseases, Switzerland
2021/04 - 2021/07 World Enterococcus Day (online). WED is a conference about enterococci joining internationally recognized experts working with Antimicrobial Resistance and the pathogenesis of Enterococcus. (2020/07/15 - 2021/07/15)
Conference (Member of the Organising Committee)
2019/04/01 - 2019/07/19 1º Workshop MicroMundo@UPorto. The workshop counted with participants from other University institutions in Portugal (FCUP, FMDUP, Escola Universitária Vasco da Gama-Coimbra, Instituto Universitário de Ciências da Saúde–CESPU, Universidade Fernando Pessoa, Universidade do Algarve, Instituto Politécnico de Castelo Branco e Centro Ciência Viva-Bragança) and Spain (Universidade de Santiago de Compostela, Universidad de La Rioja) that will expand the MicroMundo network and encourage students to pursue careers in Biological Sciences. (2019/07/19 - 2019/07/19)
Workshop (Member of the Organising Committee)
 Universidade do Porto Faculdade de Farmácia, Portugal

REQUIMTE Unidade de Ciências Biomoleculares Aplicadas, Portugal
2018/09/01 - 2018/11/15 Sessão de abertura do projeto MicroMundo@U.Porto. Salão Nobre do complexo ICBAS/FFUP. (2018/11/15 - 2018/11/15)
Conference (Member of the Organising Committee)
 Universidade do Porto Faculdade de Farmácia, Portugal

REQUIMTE Unidade de Ciências Biomoleculares Aplicadas, Portugal
2008/09/01 - 2009/07/17 8th ESCMID Summer School. I was responsible for the local organization and secretariat of this international and prestigious summer course organized by the European Society of Microbiology and Infectious Diseases [sponsors, management of scientific and social activities, didactic material, persons involved and requirement of course certification by the “European Accreditation Council for Continuing Medical Education (EACCME)] (2009/07/11 - 2009/07/17)
Conference (Co-organisor)
 European Society of Clinical Microbiology and Infectious Diseases, Switzerland

Universidade do Porto Faculdade de Farmácia, Portugal

Universidade do Porto Faculdade de Ciências, Portugal
2003 - 2003 VII Jornadas Científicas de Análises Clínicas. Colégio da Especialidade em Análises Clínicas. Póvoa de Varzim, Portugal. Colaborator in the local organization. (2003 - 2003)
Conference (Other)
 Ordem dos Farmaceuticos, Portugal

Universidade do Porto Faculdade de Farmácia, Portugal

Event participation

Activity description
Type of event 		Event name
Institution / Organization
2024/10/16 - 2024/10/16 INVITED Round-Table moderator in the Expert Talk "Industry and R&D: Partnerships with universities"
Round table
 PhD Day IUCS 2024 VI Edition - Empowering Change: Strategies to achieve the goals of the 2030 agenda
Instituto Universitário de Ciências da Saúde, Portugal
2024/04/27 - 2024/04/30 Attendee in the 34th ESCMID Global (Barcelona, Spain)
Congress
 34th European Congress of Clinical Microbiology and Infectious Diseases (ESCMID Global,)
European Society of Clinical Microbiology and Infectious Diseases, Switzerland
2023/12/07 - 2023/12/09 Attendee in Microbiotec23 (Covilhã, Portugal)
Congress
 Microbiotec23 - Congress of Microbiology and Biotechnology 2023
Sociedade Portuguesa de Microbiologia, Portugal

Universidade da Beira Interior Faculdade de Ciências da Saúde, Portugal
2023/04/27 - 2023/04/28 II TOXRUN International Congress 2023
Congress
 II TOXRUN International Congress 2023: No Boundaries for Toxicology: One Health, One Society, One Planet
Instituto Universitário de Ciências da Saúde Unidade de Investigação em Toxicologia, Portugal
2023/04/14 - 2023/04/18 Attendee in the 33rd ECCMID (Copenhagen, Denmark)
Congress
 33rd European Congress of Clinical Microbiology and Infectious Diseases (ECCMID)
European Society of Clinical Microbiology and Infectious Diseases, Switzerland
2023/04/15 - 2023/04/15 INVITED chair of 2-hour symposium (Interactions between human, animal, and environmental antibiotic resistomes)
Congress
 33rd European Congress of Clinical Microbiology and Infectious Diseases (ECCMID)
European Society of Clinical Microbiology and Infectious Diseases, Switzerland
2022/10/27 - 2022/10/27 Attendee in Dia do Laboratório de Microbiologia 2022
Conference
 Salão Nobre ICBAS/FFUP, Porto, Portugal
Universidade do Porto Faculdade de Farmácia, Portugal
2022/09/14 - 2022/09/17 Attendee in 13th International Meeting on Microbial Epidemiological Markers (IMMEM XIII)
Congress
 Bath, UK
European Society of Clinical Microbiology and Infectious Diseases, Switzerland
2022/09/14 - 2022/09/17 INVITED chair of 1h30-hour symposium (One Health or Public Health in the case of AMR?)
Congress
 13th International Meeting on Microbial Epidemiological Markers (IMMEM XIII): ‘Establishing whole genome sequencing at the core of epidemiological surveillance’
European Society of Clinical Microbiology and Infectious Diseases, Switzerland
2022/04/23 - 2022/04/26 32nd European Congress of Clinical Microbiology and Infectious Diseases
Congress
 Lisbon, Portugal
European Society of Clinical Microbiology and Infectious Diseases, Switzerland
2022/04/23 - 2022/04/26 INVITED chair of 1-hour symposium (Using water to monitor circulating pathogens)
Congress
 32nd European Congress of Clinical Microbiology and Infectious Diseases
European Society of Clinical Microbiology and Infectious Diseases, Switzerland
2021/12/09 - 2021/12/16 Ação de formação: O papel do docente na gestão académica (5h)
Other
 Formação Profissional: O papel do docente na gestão académica
Cooperativa de Ensino Superior Politécnico e Universitário, Portugal
2021/11/23 - 2021/11/26 Microbiotec21 - Congress of Microbiology and Biotechnology 2021 (online)
Congress
Sociedade Portuguesa de Microbiologia, Portugal

Universidade Nova de Lisboa, Portugal
2021/07/09 - 2021/07/12 INVITED chair of 1-hour symposium (Antimicrobial Susceptibility tomorrow)
Congress
 31st European Congress of Clinical Microbiology and Infectious Diseases (online)
European Society of Clinical Microbiology and Infectious Diseases, Switzerland
2021/07/09 - 2021/07/12 Attendee
Congress
 31st European Congress of Clinical Microbiology and Infectious Diseases (online)
European Society of Clinical Microbiology and Infectious Diseases, Switzerland
2021/05/05 - 2021/05/07 Attendee IJUP’21 – 14º Encontro de Investigação Jovem da Universidade do Porto
Universidade do Porto, Portugal
2020/09/23 - 2020/09/25 Attendee
Conference
 ESCMID Conference on Corona Virus Disease (ECCVID) (online)
European Society of Clinical Microbiology and Infectious Diseases, Switzerland
2020/09/23 - 2020/09/25 INVITED chair of 1-hour symposium (Wastewater and COVID-19: a tool for disease and SARS-CoV-2 dynamic surveillance)
Conference
 ESCMID Conference on Corona Virus Disease (ECCVID, online)
European Society of Clinical Microbiology and Infectious Diseases, Switzerland
2020/09/03 - 2020/09/04 Workshop on Interventions to Reduce the Development and Transmission of Antimicrobial Resistance (online)
Conference
Joint Programming Initiative on Antimicrobial Resistance, Sweden
2020/05/27 - 2020/05/29 Attendee
Meeting
 One Health EJP Annual Scientific Meeting 2020 (OHEJP ASM 2020, online)
2019/12/05 - 2019/12/07 Atendee MicroBiotec19, Congress of Microbiology and Biothecnology 2019
Universidade de Coimbra Faculdade de Ciencias e Tecnologia, Portugal

Sociedade Portuguesa de Microbiologia, Portugal
2019/11/15 - 2019/11/15 DAY OF THE MICROBIOLOGY LABORATORY: Microbiology, Immunology and Oncobiology: Interdisciplinary approaches to control infectious diseases and cancer
Conference
Universidade do Porto Faculdade de Farmácia, Portugal
2019/09/18 - 2019/09/21 12th International Meeting on Microbial Epidemiological Markers (IMMEM) “Moving towards genome-based pathogen surveillance – lessons learnt and challenges ahead"
Congress
 Dubrovink, Croatia
European Society of Clinical Microbiology and Infectious Diseases, Switzerland
2019/07/02 - 2019/07/02 HiTech 2019 Closing session - Co-author of the final pitch of IR Bactyping business idea with a roundtable discussion (https://www.youtube.com/watch?v=Oi9HJQRIBJA)
Other
HiSeedTech - Associação para a valorização do conhecimento, Portugal
2019/04/13 - 2019/04/16 29th European Congress of Clinical Microbiology and Infectious Diseases (ECCMID)
Congress
 Amsterdam, Netherlands
European Society of Clinical Microbiology and Infectious Diseases, Switzerland
2018/11/15 - 2018/11/15 Como Comunicar Ciência?
Workshop
 Opening session of MicroMundo@UPorto
Ciência Viva, Portugal
2018/09/28 - 2018/09/29 UCIBIO Annual Meeting
Meeting
 FCT Nova, Campus Caparica, Lisbon
REQUIMTE Unidade de Ciências Biomoleculares Aplicadas, Portugal
2018/07/18 - 2018/07/18 II Simposio Small World Initiative
Symposium
 Madrid, Spain
Universidad Complutense de Madrid, Spain
2018/04/21 - 2018/04/24 28th European Congress of Clinical Microbiology and Infectious Diseases (ECCMID)
Congress
 Madrid, Spain
European Society of Clinical Microbiology and Infectious Diseases, Switzerland
2018/04/12 - 2018/04/15 Representant of REQUIMTE@UCIBIO in Mostra da Universidade do Porto
Exhibition
 16ª Mostra da Universidade do Porto
Universidade do Porto, Portugal

REQUIMTE Unidade de Ciências Biomoleculares Aplicadas, Portugal
2018/03/07 - 2018/03/07 Revelando os segredos da microbiota urinária: impacto nas doenças do trato urinário
Conference
 VI Ciclo de Conferências de Divulgação Científica FFUP/ICBAS
Universidade do Porto Faculdade de Farmácia, Portugal
2017/12/07 - 2017/12/09 Congress of Microbiology and Biotechnology, MicroBiotec17
Congress
 Sociedade Portuguesa de Biotecnologia e Microbiologia
Universidade Católica Portuguesa Escola Superior de Biotecnologia, Portugal
2017/07/12 - 2017/07/12 Inovação e Propriedade Intelectual
Workshop
 Faculdade de Ciências do Porto
Rede de Química e Tecnologia Laboratório Associado para a Química Verde, Portugal
2017/05/29 - 2017/05/29 Writing your way into the right job – a CV skills workshop (with Sarah Blackford)
Workshop
 i3S Post-doc Forum, at ISEP
Universidade do Porto Instituto de Investigação e Inovação em Saúde, Portugal
2017/04/22 - 2017/04/25 27th European Congress of Clinical Microbiology and Infectious Diseases (ECCMID)
Congress
 Vienna, Austria
European Society of Clinical Microbiology and Infectious Diseases, Switzerland
2017/01/23 - 2017/01/23 Studying single DNA molecules using nanofluidic channels: from antibiotic resistance to DNA-protein interactions. By Fredrik Westerlund (Gothenburg, Sweden)
Seminar
Universidade do Porto Faculdade de Engenharia, Portugal
2016/10/20 - 2016/10/21 Careers in science & beyond
Seminar
 Post-doc Forum
Universidade do Porto Instituto de Investigação e Inovação em Saúde, Portugal
2016/07/19 - 2016/07/19 1.º Encontro Anual do Departamento de Ciências Biológicas da Faculdade de Farmácia da Universidade do Porto
Meeting
 Salão Nobre ICBAS/FFUP, Porto, Portugal
Universidade do Porto Faculdade de Farmácia, Portugal
2016/05/25 - 2016/05/25 Development of an immunotherapy against infection by multiresistant bacteria (By Dr. Pedro Madureira)
Seminar
Universidade do Porto Faculdade de Farmácia, Portugal
2016/04/09 - 2016/04/12 26th European Congress of Clinical Microbiology and Infectious Diseases (ECCMID)
Congress
 Amsterdam, The Netherlands
European Society of Clinical Microbiology and Infectious Diseases, Switzerland
2016/03/09 - 2016/03/11 11th International Meeting on Microbial Epidemiological Markers (IMMEM) - "Navigating Microbial Genomes: Insights from the Next Generation"
Congress
 Estoril, Portugal
European Society of Clinical Microbiology and Infectious Diseases, Switzerland
2016/02/04 - 2016/02/05 Encontro REQUIMTE – Rede de Química e Tecnologia
Meeting
 Fátima
REQUIMTE, Portugal
2015/12/10 - 2015/12/12 Congress of Microbiology and Biothecnology, MicroBiotec15
Congress
 Sociedade Portuguesa de Biotecnologia e Microbiologia, Évora, Portugal
2015/05/07 - 2015/05/08 International Symposium Microbiology: Transmission
Symposium
 Madrid, Spain
Fundación Ramon Areces, Spain

Fundación General CSIC, Spain
2012/03/31 - 2012/04/03 22nd European Congress of Clinical Microbiology and Infectious Diseases (ECCMID)
Congress
 London, UK
European Society of Clinical Microbiology and Infectious Diseases, Switzerland
2012/03/08 - 2012/03/08 Rapid Next-Generation-Sequencing Conference for Public Health and Clinical Microbiology
Conference
 Munster, Germany
2010/11/18 - 2010/11/19 18th Scientific Symposium Microbiome: deciphering the last organ of human body
Symposium
 Madrid, Spain
Fundación Lilly, Spain
2010/11/09 - 2010/11/10 V Congresso Cientifico “Antibioterapia: uma abordagem complementar"
Congress
 AEFFUP, Porto
Universidade do Porto Faculdade de Farmácia, Portugal
2010/05/05 - 2010/05/05 Biofilmes bacterianos – Mecanismos de formação, prevenção e tratamento
Seminar
 Doctoral Program of Pharmaceutical Sciences
Universidade do Porto Faculdade de Farmácia, Portugal
2010/04/10 - 2010/04/13 20th European Congress of Clinical Microbiology and Infectious Diseases (ECCMID)
Congress
 Vienna, Austria
European Society of Clinical Microbiology and Infectious Diseases, Switzerland
2010/03/16 - 2010/03/17 Clones, genes e elementos genéticos móveis: peças do puzzle da resistência a antibóticos
Symposium
 Doctoral Program of Pharmaceutical Sciences
Universidade do Porto Faculdade de Farmácia, Portugal
2010/01/11 - 2010/01/12 Final Meeting of the European Scientific Project ACE - Sixth Framework Programme on Research, Technological Development, and Demonstration
Meeting
 Amsterdam, The Netherlands
2009/11/18 - 2009/11/20 ESCMID Conference on Enterococci: from Animals to Man
Conference
 Barcelona, Spain
European Society of Clinical Microbiology and Infectious Diseases, Switzerland
2009/09/14 - 2009/09/16 I Reunión de la Red Española de Elementos Extracromosómicos (REDEEX)
Meeting
 Spanish Network for the Study of Plasmids and Extrachromosomal Elements (REDEEX), Madrid, Spain
2009/08/27 - 2009/08/28 WP2 Meeting of the European Scientific Project ACE - Sixth Framework Programme on Research, Technological Development, and Demonstration
Meeting
 Warsaw, Poland
2009/05/16 - 2009/05/19 19th European Congress of Clinical Microbiology and Infectious Diseases (ECCMID)
Congress
 Helsinki, Finland
European Society of Clinical Microbiology and Infectious Diseases, Switzerland
2008/12/01 - 2008/12/02 WP3/4 Meeting of the European Scientific Project ACE - Sixth Framework Programme on Research, Technological Development, and Demonstration
Meeting
 Copenhagen, Denmark
2008/10/25 - 2008/10/28 48th Interscience Conference on Antimicrobial Agents and Chemotherapy (ICAAC)
Congress
 Washington, USA
American Society for Microbiology, United States
2008/06/30 - 2008/06/30 Bacterial Identification, Typing and Detection
Workshop
 Porto
Universidade do Porto Instituto de Biologia Molecular e Celular, Portugal
2008/05/14 - 2008/05/17 8th International Meeting on Microbial Epidemiological Markers (IMMEM)
Meeting
 Zakopane, Poland
European Society of Clinical Microbiology and Infectious Diseases, Switzerland

American Society for Microbiology, United States
2008/04/24 - 2008/04/25 Annual Meeting of the European Scientific Project ACE - Sixth Framework Programme on Research, Technological Development, and Demonstration
Meeting
 Barcelona, Spain
2008/04/23 - 2008/04/23 1st European Day of Fighting Infection
Conference
 Barcelona, Spain
European Society of Clinical Microbiology and Infectious Diseases, Switzerland
2008/04/19 - 2008/04/22 18th European Congress of Clinical Microbiology and Infectious Diseases (ECCMID)
Congress
 Barcelona, Spain
European Society of Clinical Microbiology and Infectious Diseases, Switzerland
2007/11/15 - 2007/11/16 12th Scientific Symposium Environmental changes, microbial systems and infections
Symposium
 Madrid
Fundación Lilly, Spain
2007/09/30 - 2007/10/02 4th Congress of the European Society for Emerging Infections Lisboa, Portugal
2007/10 - 2007/10 WP3 Meeting of the European Scientific Project ACE - Sixth Framework Programme on Research, Technological Development, and Demonstration
Meeting
 Madrid, Spain
2007/09/17 - 2007/09/20 47th Interscience Conference on Antimicrobial Agents and Chemotherapy (ICAAC)
Congress
 Chicago, USA
American Society for Microbiology, United States
2007/03/31 - 2007/04/03 17th European Congress of Clinical Microbiology and Infectious Diseases (ECCMID)
Congress
 Munchen, Germany
European Society of Clinical Microbiology and Infectious Diseases, Switzerland
2007/04 - 2007/04 First Meeting of the European Scientific Project ACE - Sixth Framework Programme on Research, Technological Development and Demonstration
Meeting
 Tromso, Norway
2007/03/15 - 2007/03/18 Representant of REQUIMTE@UCIBIO in Mostra da Universidade do Porto
Exhibition
 5ª Mostra da Universidade do Porto
Universidade do Porto, Portugal

REQUIMTE Unidade de Ciências Biomoleculares Aplicadas, Portugal
2006/07/04 - 2006/07/08 2nd FEMS Congress of European Microbiologists
Congress
 Madrid, Spain
Federation Of European Microbiological Societies, Netherlands
2006/05 - 2006/05 Course of Antibiotherapy (18h) by Prof. João Carlos Sousa
Other
Hospital-Escola da Universidade Fernando Pessoa, Portugal
2006/04/28 - 2006/04/28 Seminar of Biological Safety
Seminar
Universidade de Coimbra Faculdade de Medicina, Portugal
2006 - 2006 4.º Encontro da Rede de Química e Tecnologia – REQUIMTE, Fátima.
Meeting
 Fátima
REQUIMTE, Portugal

Jury of academic degree

Topic
Role 		Candidate name (Type of degree)
Institution / Organization
2024/10/18 Analysis of microplastic's microbiome: role in antibiotic resistance spread
(Thesis) Main arguer
 Isabel Alexandre Teixeira da Silva (PhD)
Universidade de Coimbra Faculdade de Ciencias e Tecnologia, Portugal
2024/06/19 Using Planctomycetes for the study of drifting of antibiotic resistance genes in nature
(Thesis) Main arguer
 Ofélia Henriques Dordio Godinho (PhD)
Universidade do Porto Faculdade de Ciências, Portugal
2023/12/12 Bacterial Mapping for Postmortem Interval Calculation
Supervisor
 Ana Cláudia Coelho Ferreira (Master)
Instituto Universitário de Ciências da Saúde, Portugal
2023/07/19 Nasal colonization by Methicillin-Resistant Staphylococcus aureus in Health Sciences students and analysis of risk factors (Research Project realized on behalf of the Curricular Unit "Metodologia e Projeto em Investigação Forense")
Supervisor
 Luís Miguel Gomes Sampaio (Other)
Instituto Universitário de Ciências da Saúde, Portugal
2023/06/20 Evaluation of the PhD thesis project: "Preventive and therapeutic potential of plants extracts in oral candidiasis" on behalf of the curricular unit "Projeto de tese" of the Biomedical Sciences Doctoral Program
(Thesis) Arguer
 Marie Odile Madeleine Maziere (Other)
Instituto Universitário de Ciências da Saúde, Portugal
2023/03/24 Exploring the genomes of the Norwegian vancomycin resistant enterococci
(Thesis) Main arguer
 Mushtaq AL Rubaye (PhD)
UiT Norges arktiske universitet, Norway
2022/09/26 Rumo à identificação precisa de Enterococcus spp. de origem humana para aplicações forenses (Research Project realized on behalf of the Curricular Unit "Metodologia e Projeto em Investigação Forense")
Supervisor
 Maria João Teixeira (Other)
Instituto Universitário de Ciências da Saúde, Portugal
2021/10/11 Enterococcus spp. as a Producer and Target of Bacteriocins: A Double-Edged Sword in the Antimicrobial Resistance Crisis Context (PhD Seminar - Final grade: 19/20)
Supervisor
 Ana C. Almeida-Santos (PhD)
Universidade do Porto Faculdade de Farmácia, Portugal
2020/07/31 Occurrence of copper tolerant and antibiotic resistant Enterococcus faecium in poultry farms using feed supplemented with inorganic or organic copper forms (Arguer) Carina da Cunha Baptista (Other)
Universidade do Porto Faculdade de Farmácia, Portugal
2020/02 Multidrug-resistant high-risk Enterococcus faecium clones: can we really define them? (PhD Seminar - Final grade: 19/20)
Supervisor
 Ana Paula Pereira (PhD)
Universidade do Porto Faculdade de Farmácia, Portugal
2017 What are we missing when epidemiological cut-off are not used to evaluate ampicillin phenotypes among Enterococcus faecium? (Final grade: 19/20)
Supervisor
 Ana Paula Pereira (Other)
Universidade do Porto Faculdade de Farmácia, Portugal
2016 Estudo dos fatores que promovem a transferência horizontal da resistência à ampicilina em Enterococcus faecium: optimização de um protocolo (Final grade: 18/20)
Supervisor
 Flávia Mendes (Other)
Universidade do Porto Faculdade de Farmácia, Portugal
2016 Temporal shifts of clinical vancomycin-resistant Enterococcus faecium (Final grade: 19/20)
Supervisor
 Sara Aguiar (Other)
Universidade do Porto Faculdade de Farmácia, Portugal
2015 Pesquisa de Enterococcus faecium resistentes à ampicilina ou vancomicina provenientes de diversos nichos ecológicos de Angola (Arguer) Ana Rita Dias (Other)
Universidade do Porto Faculdade de Farmácia, Portugal
2015 Avaliação da atividade antimicrobiana de agentes quelantes de ferro em bactérias clinicalmente relevantes (Arguer) Ana Rita Rebelo (Other)
Universidade do Porto Faculdade de Farmácia, Portugal
2014 Extended Virulence Profile of Enterococcus faecium from Swine (Europe/USA, 1998-2008) (Final grade: 19/20)
Supervisor
 Elsa Martins (Other)
Universidade do Porto Faculdade de Farmácia, Portugal
2012 Disseminação horizontal de elementos de inserção cromossomal associados à resistência à ampicilina em Enterococcus faecium oriundos de diferentes nichos ecológicos
(Thesis) Main arguer
 Ricardo Escada (Master)
Universidade Fernando Pessoa, Portugal
2011 Molecular characterization of vancomycin-resistant Enterococcus spp. from animals: do they share identity with human enterococcal isolates? (Final grade: 18/20)
Supervisor
 Ana Isabel Cunha (Other)
Universidade do Porto Faculdade de Farmácia, Portugal
2011 Probiotics: a therapeutics in evolution (Final grade: 18/20)
Supervisor
 Sylvie Certal (Master)
Universidade do Porto Faculdade de Farmácia, Portugal
2010 Venous Insufficiency: from the feeling of tired legs to chronic pathology (Final grade: 18/20)
Supervisor
 Vanessa Azevedo (Master)
Universidade do Porto Faculdade de Farmácia, Portugal
2010 Atopic Dermatitis (Final grade: 19/20)
Supervisor
 Sofia Mateus (Master)
Universidade do Porto Faculdade de Farmácia, Portugal

Association member

Society Organization name Role
2020/02 - Current ANICT - National Association of Researchers in Science and Technology Member
2020 - Current ESCMID Food- and Water-borne Infections Study Group (EFWISG) Member
2011/11 - Current SPM - Sociedade Portuguesa de Microbiologia Member 348
2009 - Current ESCMID Study Group for Epidemiological Markers (ESGEM) Member
2007 - Current European Society of Clinical Microbioloy and Infectious Diseases (ESCMID) Member 4788
2004 - Current Ordem dos Farmacêuticos Member

Committee member

Activity description
Role 		Institution / Organization
2024/01 - Current Pós-Graduação em Análises Clínicas - 2.ª edição (B-learning) - Co-coordenador científico
Coordinator
 Instituto Universitário de Ciências da Saúde, Portugal
2023/12/08 - Current Member of the Board of Direction of the Portuguese Society of Microbiology
Member
 Sociedade Portuguesa de Microbiologia, Portugal
2022/04/20 - Current Chair of the ESCMID Food- and Water-borne Infections Study Group (EFWISG), one of the 31 study groups from the European Society of Clinical Microbiology and Infectious Diseases that are engaged in advancing scientific knowledge and/or disseminating professional guidelines in the field of clinical microbiology and infectious diseases.
Coordinator
 European Society of Clinical Microbiology and Infectious Diseases, Switzerland
2021/10 - Current Comissão de acompanhamento do Curso Licenciatura em Ciências Biomédicas (2021/2022, 2022/2023)
Member
 Instituto Universitário de Ciências da Saúde, Portugal
2021 - Current Coordinator of the Office of Communication and Image of the Toxicology Research Unit (TOXRUN)
Coordinator
 Instituto Universitário de Ciências da Saúde, Portugal
2023/10/16 - 2023/10/16 Participation in a meeting of the External Evaluation Committee of the A3ES institutional evaluation process for IUCS-CESPU as a co-coordinator of the 1H-TOXRUN research unit
Member
2023/04/12 - 2023/05/05 Member of the working group related to "Estratégia institucional e políticas de promoção da atividade científica, tecnológica e artística" in preparation of the institutional evaluation process by A3ES (Agência De Avaliação E Acreditação Do Ensino Superior)
Member
 Instituto Universitário de Ciências da Saúde, Portugal
2021/03 - 2023/04 Member of the UCIBIO Working Group of Communication (WG5) that regularly promotes scientific events, webinars and activities on behalf of the Applied Molecular Biosciences Unit.
Member
 REQUIMTE Unidade de Ciências Biomoleculares Aplicadas, Portugal
2020/07/06 - 2022/04/20 Secretary of the ESCMID Food- and Water-borne Infections Study Group (EFWISG), one of the 31 study groups from the European Society of Clinical Microbiology and Infectious Diseases that are engaged in advancing scientific knowledge and/or disseminating professional guidelines in the field of clinical microbiology and infectious diseases.
Other
 European Society of Clinical Microbiology and Infectious Diseases, Switzerland

Conference scientific committee

Conference name Conference host
2023/12 - 2024/05/02 III 1H-TOXRUN Congress. No boundaries for Toxicology: One Health, One Society, One Planet: the big challenges of the 21st century Instituto Universitário de Ciências da Saúde Unidade de Investigação em Toxicologia & Uma Só Saúde
2023/12/04 - 2023/12/18 34th European Congress of Clinical Microbiology and Infectious Diseases (ECCMID). 46 abstracts reviewed. European Society of Clinical Microbiology and Infectious Diseases (ESCMID)
2022/10/01 - 2023/04/28 II TOXRUN Congress 2023. No boundaries for Toxicology: One Health, One Society, One Planet. 46 abstracts/communications reviewed. Instituto Universitário de Ciências da Saúde Unidade de Investigação em Toxicologia
2022/12/05 - 2023/04/18 33rd European Congress of Clinical Microbiology and Infectious Diseases (ECCMID). 48 abstracts reviewed. European Society of Clinical Microbiology and Infectious Diseases (ESCMID)
2021/10 - 2022/10 Microbiologia 2022 (online). 38 abstracts reviewed. Sociedade Portuguesa de Microbiologia
2021/12/03 - 2021/12/21 32nd European Congress of Clinical Microbiology and Infectious Diseases (ECCMID). 41 abstracts reviewed. European Society of Clinical Microbiology and Infectious Diseases (ESCMID)
2021/06/23 - 2021/07/05 World Enterococcus Day (online). 17 abstracts reviewed.
2021/05/12 - 2021/06/01 31st European Congress of Clinical Microbiology and Infectious Diseases (ECCMID) (online). 49 abstracts reviewed. European Society of Clinical Microbiology and Infectious Diseases (ESCMID)

Consulting

Activity description Institution / Organization
2024/03/20 - 2024/03/21 Invited expert at the "Oceans foresight Workshop" (Lisbon), in the framework of the project "Navigating Tomorrow’s Tide: Exploring the Future of Ocean Resources and Their Impact on Food and Feed Safety" European Food Safety Authority, Italy
2021/10 - 2021/12 Hearing Expert for the Animal Health and Welfare Team of the Animal and Plant Health Unit of the European Food Safety Authority on 2 fact sheets about Enterococcus cecorum and Enterococcus faecclis. European Food Safety Authority, Italy
2017 - 2017 External Referee of PhD thesis. Student: Ricardo León Sampedro. Thesis title: Enterococcus faecalis: new insights about population structure and the evolutionary impact of mobile genetic elements Universidad Complutense de Madrid, Spain

Course / Discipline taught

Academic session Degree Subject (Type) Institution / Organization
2022/02 - Current Microbiologia Geral (Theoretical classes) - Regente Medicina Veterinária (Mestrado integrado) Instituto Universitário de Ciências da Saúde, Portugal
2022/02 - Current Microbiologia Geral (Theoretical-practical and Laboratorial Classes) - Regente Ciências Biomédicas (Licenciatura) Instituto Universitário de Ciências da Saúde, Portugal
2022/02 - Current Microbiologia Geral (Laboratorial classes) Medicina Dentária (Mestrado integrado) Instituto Universitário de Ciências da Saúde, Portugal
2022/01 - Current Investigação em Ciências Biológicas Aplicada à Saúde (Theoretical-practical classes) Ciências Biomédicas (Doutoramento) Instituto Universitário de Ciências da Saúde, Portugal
2021/10 - Current Metodologia e Projeto em Investigação Forense (research project) Ciências Forenses (Licenciatura) Instituto Universitário de Ciências da Saúde, Portugal
2021/09 - Current Bacteriologia (Theoretical and Laboratorial Classes) - Regente Ciências Farmacêuticas (Mestrado integrado) Instituto Universitário de Ciências da Saúde, Portugal
2023/11/24 - 2024/01/19 Bacteriologia Clínica (Theoretical/Practical classes) - Regente Pós-Graduação em Análises Clínicas (Pós-Graduação) Instituto Universitário de Ciências da Saúde, Portugal
2023/01/27 - 2023/01/27 Microbiologia Forense (Theoretical classes - 4 hours). Curso de Especialização em Perícias Forenses (Pós-Graduação) Universidade do Porto Faculdade de Medicina, Portugal
2021/03 - 2021/07 Microbiologia Geral (Theoretical classes) Medicina Veterinária (Mestrado integrado) Instituto Universitário de Ciências da Saúde, Portugal
2021/02 - 2021/06 Microbiologia Geral (Laboratorial classes) Medicina Dentária (Mestrado integrado) Instituto Universitário de Ciências da Saúde, Portugal
2020/02/17 - 2020/07/31 Microbiologia Geral (Laboratorial Classes) Medicina Dentária (Mestrado integrado) Instituto Universitário de Ciências da Saúde, Portugal
2019/03 - 2019/07 Microbiologia Geral (Laboratorial classes) Mestrado Integrado em Medicina Dentária (Mestrado integrado) Instituto Universitário de Ciências da Saúde, Portugal
2019/03/25 - 2019/03/29 Guest instructor of practical classes in the curricular unit of Clinical Bacteriology "Skin and Soft Tissue Infections. Skin microbiota. Examples of clinically-relevant bacteria and practical cases" Análises Clínicas (Mestrado integrado) Universidade do Porto Faculdade de Farmácia, Portugal
2018/02 - 2018/07 Microbiologia Geral (Laboratorial Classes) Medicina Dentária (Mestrado integrado) Instituto Universitário de Ciências da Saúde, Portugal
2017/03/17 - 2017/03/22 Guest instructor of practical classes in the curricular unit of Clinical Bacteriology "Skin and Soft Tissue Infections. Skin microbiota. Examples of clinically-relevant bacteria" Análises Clínicas (Mestrado) Universidade do Porto Faculdade de Farmácia, Portugal
2016/11 - 2016/11 Guest instructor of practical classes in the curricular unit of Bacteriology "Antibiotic susceptibility: clinical breakpoints vs. ECOFFs; examples of clinically-relevant bacteria" Ciências Farmacêuticas (Mestrado integrado) Universidade do Porto Faculdade de Farmácia, Portugal
2007 - 2007 Guest instructor of practical classes in the curricular unit of Bacteriology “The fundament of PCR” Ciências Farmacêuticas (Mestrado integrado) Universidade do Porto Faculdade de Farmácia, Portugal

Evaluation committee

Activity description
Role 		Institution / Organization Funding entity
2024/01 - 2024 Research Scholarship, under the "rapid and low-cost diagnosis for clinical microbiology typing using ftir" project (inv060596), funded by the Bill & Melinda Gates foundation under the grand challenges 2022 support program (role as alternate vowel)
Evaluator
 Universidade do Porto Faculdade de Farmácia, Portugal
2023/01 - 2023 Call for an Initial Research Fellowship (BIC) (Reference REQUIMTE 2023-02) on the project CLEANWATER: Combining ecological status and microbiota diversity to decipher bioindicators for emergent micropollutants in water supply systems with reference to the project 2022.02124.PTDC, supported by national funds by FCT/MCTES (role as Vowel).
Evaluator
 REQUIMTE, Portugal
2016 - 2016 Call for Post Doctoral Scholarship Reference ICETA 2016-61 at the Applied Biomolecular Sciences Unit - MULTI / 04378, with financial support from FCT / MEC through national funds and when applicable co-financed by FEDER POCI-01-0145- FEDER-007728, under the PT2020 Partnership Agreement for the REQUIMTE institution.
Member
 Universidade do Porto Instituto de Ciências e Tecnologias Agrárias e Agro-Alimentares, Portugal

Interview (newspaper / magazine)

Activity description Newspaper / Forum
2024/02/11 Celebrating Women in Science with ESCMID leaders - International Day of Women and Girls in Science 2024 ESCMID/news-media (online)
2024/01/29 Opinion article: "A enigmática Doença X: estratégias que podem revolucionar a Saúde" Publico (online)
2023/11/18 Adeus Covid19. Agora é a resistência a antimicrobiana que preocupa a Europa. Jornal Público
2023/11/17 Resistência a antibióticos de última linha é a grande dor de cabeça dos hospitais portugueses Público (online)
2020/07/13 Interview for the prestigious American magazine "The Scientist" after a communication presented in the 30th ECCMID. - "Our Pets May Harbor Much More Than Coronavirus". The Scientist
2019/08/27 I&D Interview regarding the concept, target and advantages of IR Bactyping and the business case built during HiTech program "As caçadoras de bactérias" Exame Informática

Interview (tv / radio show)

Program Topic
2024/04/22 - 2024/04/22 Primeiro Jornal (SIC) MicroMundo@IUCS-CESPU (2nd Edition): Sessão experimental na Escola Básica do Cristelo (9º ano)
2023/11/27 - 2023/11/27 TSF Pais e Filhos A Legionella
2023/11/21 - 2023/11/21 TSF Pais e Filhos Os pais também podem ajudar a combater as bactérias multirresistentes. Como?
2023/08/18 - 2023/08/18 A História do Dia (Rádio Observador) Como é que uma bactéria mata um jovem de repente?
2019/09 - 2019/09 Exame Informática (SIC Notícias) IR Bactyping: infravermelhos para detetar bactérias em hospitais

Journal scientific committee

Journal title (ISSN) Publisher
2022/10 - Current Scientific Reports (2045-2322) Springer Nature
2022/03 - Current Journal of Global Antimicrobial Resistance (Section Editor: Molecular Epidemiology of Resistant Organisms; 28 articles edited) (2213-7165) Elsevier
2021/02/10 - Current Clinical Microbiology and Infection (1469-0691) Elsevier
2020/03 - Current RevSALUS - Revista Cientifica Da Rede Academica Das Ciencias Da Saude Da Lusofonia
2018/10 - Current PLoS ONE (1932-6203) Public Library of Science
2018/10 - Current BMC Microbiology (1471-2180) Springer (Biomed Central Ltd.)
2018/07/16 - Current Frontiers in Microbiology [Part of Editorial Board: Review Editor in Antimicrobials, Resistance and Chemotherapy] (1664-302X) Frontiers Media SA
2018/07 - Current Environment International (0160-4120) Elsevier
2018/01 - Current International Journal of Antimicrobial Agents (0924-8579) Elsevier
2013/06 - Current Journal of Global Antimicrobial Resistance (2213-7165) Elsevier
2011 - Current Journal of Antimicrobial Chemotherapy (1460-2091) Oxford University Press
2018/10 - 2020/03 Frontiers in Microbiology [Guest Associated Editor of the Special Issue Antimicrobials and Anticancers of Bacterial Origins] (1664-302X) Frontiers Media SA
2018/09 - 2020/03 Pathogens [Guest Editor of the Special Issue "Transmission of Antibiotic Resistant Bacteria and Genes: Unveiling the Jigsaw Pieces of a One Health Problem"] (2076-0817) MDPI AG
2019/07 - 2019/08 Antimicrobial Resistance and Infection Control (2047-2994) Springer (Biomed Central Ltd.)
2018/07 - 2018/09 International Journal of Food Science & Technology (1365-2621) Wiley (Blackwell Publishing)
2017/06 - 2018/07 Frontiers in Microbiology (1664-302X) Frontiers Media SA
2018/03 - 2018/04 International Journal of Medical Microbiology (1438-4221) Elsevier
2018/01 - 2018/01 Acta Veterinaria Brno (1801-7576) University of Veterinary and Pharmaceutical Sciences
2013/10 - 2018 The Journal of Infection in Developing Countries (1972-2680) Journal of Infection in Developing Countries
2017/06 - 2017/11 FEMS Microbiology Letters (1574-6968) Oxford University Press
2015/11 - 2017/06 Journal of Medical Microbiology (1473-5644) Microbiology Society
2016/01 - 2016/03 Journal of Pathogens (2090-3065) Hindawi Limited
2015/04 - 2015/06 Folia Microbiologica (1874-9356) Springer-Verlag
2012/11 - 2012/12 Microbial Drug Resistance (1931-8448) Mary Ann Liebert
2012/01 - 2012/02 Scandinavian Journal of Infectious Diseases (1651-1980) Informa UK (Taylor & Francis)

Mentoring / Tutoring

Topic Student name
2008 - Current Training in classical and modern Microbiology techniques Undergraduate and PhD students
2024/02 - 2024/05 MicroMundo@IUCS-CESPU (2nd Edition): Protocolo entre IUCS-CESPU e Escola Secundária do Cristelo Simão Bettencourt; Rúben Rodrigues; Beatriz Antunes, Diana Leão, Joana Pinto; Mariana Alves; Hugo Lopes; Ricardo Faria
2022/12 - 2023/05 MicroMundo@IUCS-CESPU (1st Edition): Protocolo entre IUCS-CESPU e Escola Secundária do Cristelo Luís Sampaio; Ana B. Dias; Simão Bettencourt; Luís Costa; Rúben Rodrigues; Clara Costa
2022/02 - 2022/05 MicroMundo@UPorto (4th Edition): Protocolo entre Faculdade de Farmácia do Porto e Escola Carolina Michaelis Ana Paiva; Ana Per.; Ana Teix.; Beat. Lamas; Diana L.; Ema Pinto; L. Campos; M. Rito; Sabrina M.
2020/02 - 2020/05 MicroMundo@UPorto (2nd Edition): Protocolo entre Faculdade de Farmácia do Porto e Escola Carolina Michaelis Ana Martins, Daniela Silva, Hugo Silva, Inês Castro, M. Vieira, Oriana Graça, Sandra Mota, Sofia R.
2019/02 - 2019/05 MicroMundo@UPorto (1st Edition): Protocolo entre Faculdade de Farmácia do Porto e Escola Irene Lisboa Hugo Teixeira, Inês Todo Bom, Beatriz Rocha, Ana Sofia Magalhães, Joana Esteves

Other jury / evaluation

Activity description Institution / Organization
2024/01/08 - 2024/01/09 Reviewer of a Research Project application for funding by CESPU, under the call “GI2-CESPU-2023”, open from 17 November to 12 December, 2023. Gabinete para a Investigação e a Inovação (GI2) - CESPU Grants. Instituto Universitário de Ciências da Saúde, Portugal
2020/09/10 - 2020/09/30 Reviewer of a research funding application from the Polish National Science Centre (NCN), which is a government agency that supports basic research in Poland. National Science Centre , Poland
2020/07/17 - 2020/08/12 Reviewer of a research funding application from the Estonian Research Council (ETAg), which is the main research funding organization in Estonia that awards research grants on the basis of open competition. Eesti Teadusagentuur, Estonia
Distinctions

Award

2024 Prémio Anual de Produtividade Científica do IUCS - 2023
Instituto Universitário de Ciências da Saúde, Portugal
2023 Prémio Anual de Produtividade Científica do IUCS - 2022
Instituto Universitário de Ciências da Saúde, Portugal
2020 Best oral presentation in One Health EJP Annual Scientific Meeting 2020
2020 Best oral presentation of SIFFUP-Simpósio de Investigação FFUP
Universidade do Porto Faculdade de Farmácia, Portugal
2019 Business Ignition Programme (BIP) Proof Funding
Fundação Amadeu Dias, Portugal
2019 Best oral presentation of SIFFUP-Simpósio de Investigação FFUP
2018 ESCMID Observership - Award given to Ana R. Freitas to visit a foreign institution (Statens Serum Institute, Copenhagen, Denmark) and build a new web tool to access virulence genes of Enterococcus faecium genomes
European Society of Clinical Microbiology and Infectious Diseases, Switzerland
2013 ESCMID/FEMS Research Award 2013 (Best ESCMID Research Gant project among 15 awardees; 500.00 eur)
European Society of Clinical Microbiology and Infectious Diseases, Switzerland
2008 Award for the best oral presentation on the XIII SEIMC (Madrid, Spain)
Sociedad Española de Enfermedades Infecciosas y Microbiología Clínica, Spain

Other distinction

2023 Article selected as the Journal Title Story (The Future Is Now: Unraveling the Expanding Potential of Human (Necro)Microbiome in Forensic Investigations; in Microorganisms)
MDPI AG, Switzerland
2021 Travel grant award attributed for the outstanding quality of the research work presented on the 31st ECCMID
European Society of Clinical Microbiology and Infectious Diseases, Switzerland
2021 Ana Freitas's review highlighted as an Editor Choice in Antibiotics journal (https://www.mdpi.com/2079-6382/10/10/1215)
MDPI AG, Switzerland
2020 Affiliated Societies Travel Grant (as a member of ESCMID and Sociedade Portuguesa de Microbiologia)
European Society of Clinical Microbiology and Infectious Diseases, Switzerland
2019 Registration grant for the high quality of the research work presented on the 12th International Meeting on Microbial Epidemiological Markers (IMMEM)
European Society of Clinical Microbiology and Infectious Diseases, Switzerland
2018 2018 Travel Award (720 EUR)
Pathogens Journal (MDPI), Switzerland
2017 Ana Freitas's publication highlighted as an Editor’s Choice in Journal of Antimicrobial Chemotherapy (https://www.requimte.pt/ucibio/news/ana-freitass-publication-highlighted-editors-choice-journal-antimicrobial-chemotherapy)
British Society for Antimicrobial Chemotherapy, United Kingdom
2016 Registration grant for the high quality of the research work presented on the 11th International Meeting on Microbial Epidemiological Markers (IMMEM)
European Society of Clinical Microbiology and Infectious Diseases, Switzerland
2012 Travel grant award attributed for the outstanding quality of the research work presented on the 22nd ECCMID (London, UK).
European Society of Clinical Microbiology and Infectious Diseases, Switzerland
2009 Travel grant award attributed for the high quality of the research work presented on the 19th ECCMID (Helsinki, Finland)
European Society of Clinical Microbiology and Infectious Diseases, Switzerland
2009 Attendance grant attributed for assistance of the “ESCMID Conference on Enterococci: from animals to man” (Barcelona, Spain)
European Society of Clinical Microbiology and Infectious Diseases, Switzerland
2008 Travel grant award attributed for the high quality of the research work presented on the 18th ECCMID (Barcelona, Spain)
European Society of Clinical Microbiology and Infectious Diseases, Switzerland
2008 Registration grant for the high quality of the research work presented on the 8th IMMEM (Zakopane, Poland)
European Society of Clinical Microbiology and Infectious Diseases, Switzerland
2008 Travel grant award attributed for the high quality of the research work presented on the 48th ICAAC (Washington, USA)
American Society of Microbiology, United States
2007 Travel grant award attributed for the high quality of the research work presented on the 47th ICAAC (Chicago, USA)
American Society of Microbiology, United States