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Timothy Ravasi completed the Doctor in Biology in 1999 from the Università degli Studi di Milano Dipartimento di Bioscienze. He is a Full Tenured Professor in Okinawa Institute of Science and Technology, the Pricipal Investigator of the Marine Climate Change Unit and and an Adjunct Professor at the Australian Research Council Center of Excellence for Coral Reef Studies at the James Cook University in Australia. Ravasi research interest lies on the current status of coral reef ecosystems. He is particularly interested in looking at ecologically relevant issues in the light of rapid environmental change, such as climate change. Using integrative approaches, he seeks to identify mechanisms responsible for the acclimation and adaptation of coral reef fish to rising ocean temperatures and acidification. During the last 15 years Ravasi has supervised: 25 post-docs (4 ongoing) and 20 PhD students (3 ongoing). Ravasi published more then 180 peer-reviewed articles in journal such as Nature, Cell, Science, Nature Climate Change and Nature Ecology & Evolution, he as an H-index of 57 and a i10-index of 117.
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Identification

Personal identification

Full name
Timothy Ravasi Professor

Citation names

  • Professor, Timothy
  • Timothy Ravasi

Author identifiers

Ciência ID
D311-C620-3EAD
ORCID iD
0000-0002-9950-465X
Google Scholar ID
UR9EUP8AAAAJ&hl

Telephones

Mobile phone
  • (+81) 8064950157 (Professional)

Addresses

  • 1919-1 Tancha, 904-0495, Onna-son, Okinawa, Japan (Professional)

Websites

Knowledge fields

  • Natural sciences - Biological Sciences - Marine Biology
  • Natural sciences - Biological Sciences - Ecology
  • Natural sciences - Earth and Environmental Sciences - Environmental Sciences
  • Natural sciences - Biological Sciences - Genetics and Heredity

Languages

Language Speaking Reading Writing Listening Peer-review
English Proficiency (C2) Proficiency (C2) Proficiency (C2) Proficiency (C2) Proficiency (C2)
Italian (Mother tongue)
Education
Degree Classification
1994/01/02 - 1999/08/13
Concluded
 Biology (Doctor)
Università degli Studi di Milano Dipartimento di Bioscienze, Italy
1994/09/01 - 1999/08/05
Concluded
 Biology (Laurea)
Università degli Studi di Milano, Italy
Affiliation

Teaching in Higher Education

Category
Host institution 		Employer
2020/06/01 - Current Invited Full Professor (University Teacher) James Cook University, Australia

Positions / Appointments

Category
Host institution 		Employer
2019/08/28 - Current Full Tenured Professor Okinawa Institute of Science and Technology Promotion Corp, Japan
2014/01/05 - 2019/05/01 Full Tenured Professor King Abdullah University of Science and Technology, Saudi Arabia
2008/08/01 - 2014/08/01 Associate Professor King Abdullah University of Science and Technology, Saudi Arabia
Outputs

Publications

Book
  1. Hume, D.A.; Wells, C.A.; Ravasi, T.. Transcriptional regulatory networks in macrophages. 2007.
Book chapter
  1. Timothy Ravasi; Charalampos Mavromatis; Bokil, Nilesh J.; Schembri, Mark A.; Sweet, Matthew J.. "Co-transcriptomic Analysis by RNA Sequencing to Simultaneously Measure Regulated Gene Expression in Host and Bacterial Pathogen". 145-158. Springer New York, 2016.
    10.1007/978-1-4939-3335-8_10
Conference paper
  1. MARIA F CONTRERAS G; Zaher, A.; Jose Efrain Perez; Timothy Ravasi; Jürgen Kosel. "Magnetic nanowires and hyperthermia: How geometry and material affect heat production efficiency". 2015.
    10.1109/INTMAG.2015.7157495
  2. Gregorio Alanis-Lobato; Cannistraci, Carlo; Timothy Ravasi. "Exploring the genetics underlying autoimmune diseases with network analysis and link prediction". 2014.
    10.1109/MECBME.2014.6783232
  3. MARIA F CONTRERAS G; Timothy Ravasi; Jürgen Kosel. "Targeted cancer cell death induced by biofunctionalized magnetic nanowires". 2014.
    10.1109/MECBME.2014.6783203
  4. Rogowski, Marcin; Cannistraci, Carlo; Gregorio Alanis-Lobato; Weber, Philip P.; Timothy Ravasi; Schulze, Jürgen P.; Acevedo-Feliz, Daniel. "Poster: Observing change in crowded data sets in 3D space - Visualizing gene expression in human tissues". 2013.
    10.1109/3DUI.2013.6550234
  5. Cannistraci, Carlo; Timothy Ravasi; Montevecchi, Franco Maria; Ideker, Trey; Alessio, Massimo. "Nonlinear dimension reduction and clustering by Minimum Curvilinearity unfold neuropathic pain and tissue embryological classes". 2010.
    10.1093/bioinformatics/btq376
Conference poster
  1. Professor, Timothy. "Functionalized Nanowires - Toward Targeting Leukemic cells". 2019.
Journal article
  1. James Davis Reimer; Haruko Kurihara; Timothy Ravasi; Yoichi Ide; Michael Izumiyama; Hajime Kayanne. "Unexpected high abundance of aragonite-forming Nanipora (Octocorallia: Helioporacea) at an acidified volcanic reef in southern Japan". Marine Biodiversity 51 1 (2021): https://doi.org/10.1007/s12526-021-01165-0.
    10.1007/s12526-021-01165-0
  2. Rachel K. Spinks; Lucrezia C. Bonzi; Timothy Ravasi; Philip L. Munday; Jennifer M. Donelson. "Sex- and time-specific parental effects of warming on reproduction and offspring quality in a coral reef fish". Evolutionary Applications (2021): https://doi.org/10.1111/eva.13187.
    10.1111/eva.13187
  3. Alison A. Monroe; Huoming Zhang; Celia Schunter; Timothy Ravasi. "Probing SWATH-MS as a tool for proteome level quantification in a nonmodel fish". Molecular Ecology Resources (2020): https://doi.org/10.1111/1755-0998.13229.
    10.1111/1755-0998.13229
  4. Munday, Philip L.; Dixson, Danielle L.; Welch, Megan J.; Chivers, Douglas P.; Domenici, Paolo; Grosell, Martin; Heuer, Rachael M.; et al. "Methods matter in repeating ocean acidification studies". Nature 586 7830 (2020): E20-E24. http://dx.doi.org/10.1038/s41586-020-2803-x.
    10.1038/s41586-020-2803-x
  5. Wee, Hin Boo; Berumen, Michael L.; Ravasi, Timothy; Reimer, James Davis. "Symbiodiniaceae diversity of Palythoa tuberculosa in the central and southern Red Sea influenced by environmental factors". Coral Reefs 39 6 (2020): 1619-1633. http://dx.doi.org/10.1007/s00338-020-01989-5.
    10.1007/s00338-020-01989-5
  6. Tsang, Hin Hung; Welch, Megan J.; Munday, Philip L.; Ravasi, Timothy; Schunter, Celia. "Proteomic Responses to Ocean Acidification in the Brain of Juvenile Coral Reef Fish". Frontiers in Marine Science 7 (2020): http://dx.doi.org/10.3389/fmars.2020.00605.
    10.3389/fmars.2020.00605
  7. Moisés A. Bernal; Celia Schunter; Robert Lehmann; Damien J. Lightfoot; Bridie J. M. Allan; Heather D. Veilleux; Jodie L. Rummer; Philip L. Munday; Timothy Ravasi. "Species-specific molecular responses of wild coral reef fishes during a marine heatwave". Science Advances (2020): https://doi.org/10.1126/sciadv.aay3423.
    10.1126/sciadv.aay3423
  8. Timothy Ravasi. "Viral ecogenomics across the Porifera.". Microbiome (2020): http://hdl.handle.net/10754/665761.
    10.1186/s40168-020-00919-5
  9. Professor, Timothy. "Beyond buying time: the role of plasticity in phenotypic adaptation to rapid environmental change". Philosophical Transactions of the Royal Society B: Biological Sciences (2019): http://hdl.handle.net/10754/631661.
    10.1098/rstb.2018.0174
  10. Schunter, C.; Lehmann, R.; Bernal, M.; Ravasi, T.. "Unusual bilateral color pattern in a regal angelfish from the red sea". Bulletin of Marine Science 95 1 (2019): 113-114. http://www.scopus.com/inward/record.url?eid=2-s2.0-85060625438&partnerID=MN8TOARS.
    10.5343/bms.2018.0050
  11. Timothy Ravasi. "A genomic view of the reef-building coral Porites lutea and its microbial symbionts". Nature Microbiology (2019): http://hdl.handle.net/10754/656919.
    10.1038/s41564-019-0532-4
  12. Ryu, Tae Woo; Veilleux, Heather D.; Donelson, Jennifer M.; Philip Munday; Timothy Ravasi. "The epigenetic landscape of transgenerational acclimation to ocean warming". Nature Climate Change (2018): http://hdl.handle.net/10754/627866.
    10.1038/s41558-018-0159-0
  13. Veilleux, H.D.; Ryu, T.; Donelson, J.M.; Ravasi, T.; Munday, P.L.. "Molecular response to extreme summer temperatures differs between two genetically differentiated populations of a coral reef fish". Frontiers in Marine Science 5 SEP (2018): http://www.scopus.com/inward/record.url?eid=2-s2.0-85054283453&partnerID=MN8TOARS.
    10.3389/fmars.2018.00349
  14. Bernal, M.A.; Donelson, J.M.; Veilleux, H.D.; Ryu, T.; Munday, P.L.; Ravasi, T.. "Phenotypic and molecular consequences of stepwise temperature increase across generations in a coral reef fish". Molecular Ecology 27 22 (2018): 4516-4528. http://www.scopus.com/inward/record.url?eid=2-s2.0-85055472023&partnerID=MN8TOARS.
    10.1111/mec.14884
  15. Pascelli, C.; Laffy, P.W.; Kupresanin, M.; Ravasi, T.; Webster, N.S.. "Morphological characterization of virus-like particles in coral reef sponges". PeerJ 2018 10 (2018): http://www.scopus.com/inward/record.url?eid=2-s2.0-85055112439&partnerID=MN8TOARS.
    10.7717/peerj.5625
  16. Lehmann, R.; Lightfoot, D.J.; Schunter, C.; Michell, C.T.; Ohyanagi, H.; Mineta, K.; Foret, S.; et al. "Finding Nemo’s Genes: A chromosome-scale reference assembly of the genome of the orange clownfish Amphiprion percula". Molecular Ecology Resources (2018): http://www.scopus.com/inward/record.url?eid=2-s2.0-85053346785&partnerID=MN8TOARS.
    10.1111/1755-0998.12939
  17. Dina Hajjar; Kremb, Stephan Georg; Sioud, Salim; Emwas, Abdul-Hamid M.; Christian R. Voolstra; Timothy Ravasi. "Anti-cancer agents in Saudi Arabian herbals revealed by automated high-content imaging". PLOS ONE 12 6 (2017): e0177316-e0177316. http://hdl.handle.net/10754/625051.
    10.1371/journal.pone.0177316
  18. Celia Schunter; Welch, Megan J.; Nilsson, Göran E.; Rummer, Jodie L.; Philip Munday; Timothy Ravasi. "An interplay between plasticity and parental phenotype determines impacts of ocean acidification on a reef fish". Nature Ecology & Evolution (2017): http://hdl.handle.net/10754/626399.
    10.1038/s41559-017-0428-8
  19. Moitinho-Silva, Lucas; Nielsen, Shaun; Amir, Amnon; Gonzalez, Antonio; Ackermann, Gail L.; Cerrano, Carlo; Astudillo-Garcia, Carmen; et al. "The sponge microbiome project". GigaScience 6 10 (2017): 1-7. http://hdl.handle.net/10754/626161.
    10.1093/gigascience/gix077
  20. Torda, G.; Donelson, J.M.; Aranda, M.; Barshis, D.J.; Bay, L.; Berumen, M.L.; Bourne, D.G.; et al. "Rapid adaptive responses to climate change in corals". Nature Climate Change 7 9 (2017): 627-636. http://www.scopus.com/inward/record.url?eid=2-s2.0-85028631014&partnerID=MN8TOARS.
    10.1038/nclimate3374
  21. Bortell, Nikki; Basova, Liana; Semenova, Svetlana; Fox, Howard S.; Timothy Ravasi; Marcondes, Maria Cecilia G.. "Astrocyte-specific overexpressed gene signatures in response to methamphetamine exposure in vitro". Journal of Neuroinflammation 14 1 (2017): http://hdl.handle.net/10754/622994.
    10.1186/s12974-017-0825-6
  22. Voolstra, C.R.; Adamski, M.; Agrawal, S.; Antunes, A.; Aranda, M.; Baxevanis, A.; Blaxter, M.; et al. "Advancing genomics through the Global Invertebrate Genomics Alliance (GIGA)". Invertebrate Systematics 31 1 (2017): 1-7. http://www.scopus.com/inward/record.url?eid=2-s2.0-85015749338&partnerID=MN8TOARS.
    10.1071/IS16059
  23. Voolstra, C.R.; Adamski, M.; Agrawal, S.; Antunes, A.; Aranda, M.; Baxevanis, A.; Blaxter, M.; et al. "Corrigendum to: Advancing genomics through the Global Invertebrate Genomics Alliance (GIGA) (Invertebrate Systematics (2017) 31: 1 (1-7) DOI: 10.1071/IS16059)". Invertebrate Systematics 31 2 (2017): 231-231. http://www.scopus.com/inward/record.url?eid=2-s2.0-85018169079&partnerID=MN8TOARS.
    10.1071/IS16059_CO
  24. Aldo Martinez Banderas; Aires, Antonio; Teran, Francisco J.; Jose Efrain Perez; Cadenas, Jael F.; Nouf Alsharif; Timothy Ravasi; Cortajarena, Aitziber L.; Jürgen Kosel. "Functionalized magnetic nanowires for chemical and magneto-mechanical induction of cancer cell death". Scientific Reports 6 1 (2016): http://hdl.handle.net/10754/621257.
    10.1038/srep35786
  25. Yi Jin Liew; Ryu, Tae Woo; Manuel Aranda; Timothy Ravasi. "miRNA Repertoires of Demosponges Stylissa carteri and Xestospongia testudinaria". PLoS ONE 11 2 (2016): e0149080-e0149080. http://hdl.handle.net/10754/600684.
    10.1371/journal.pone.0149080
  26. Jahn, Martin T.; Markert, Sebastian M.; Ryu, Tae Woo; Timothy Ravasi; Stigloher, Christian; Hentschel, Ute; Moitinho-Silva, Lucas. "Shedding light on cell compartmentation in the candidate phylum Poribacteria by high resolution visualisation and transcriptional profiling". Scientific Reports 6 1 (2016): http://hdl.handle.net/10754/621834.
    10.1038/srep35860
  27. Jose Efrain Perez; Timothy Ravasi; Jürgen Kosel. "Mesenchymal stem cells cultured on magnetic nanowire substrates". Nanotechnology 28 5 (2016): 055703-055703. http://hdl.handle.net/10754/622787.
    10.1088/1361-6528/aa52a3
  28. Casas, Laura; Saborido-Rey, Fran; Ryu, Tae Woo; Michell, Craig; Timothy Ravasi; Xabier Irigoien. "Sex Change in Clownfish: Molecular Insights from Transcriptome Analysis". Scientific Reports 6 (2016): 35461-35461. http://hdl.handle.net/10754/621062.
    10.1038/srep35461
  29. Yanal Ghosheh; Loqmane Seridi; Ryu, Tae Woo; Takahashi, Hazuki; Valerio Orlando; Carninci, Piero; Timothy Ravasi. "Characterization of piRNAs across postnatal development in mouse brain". Scientific Reports 6 1 (2016): http://hdl.handle.net/10754/607207.
    10.1038/srep25039
  30. Najera, Julia A.; Bustamante, Eduardo A.; Bortell, Nikki; Morsey, Brenda; Fox, Howard S.; Timothy Ravasi; Marcondes, Maria Cecilia Garibaldi. "Methamphetamine abuse affects gene expression in brain-derived microglia of SIV-infected macaques to enhance inflammation and promote virus targets". BMC Immunology 17 1 (2016): http://hdl.handle.net/10754/606975.
    10.1186/s12865-016-0145-0
  31. Celia Schunter; Welch, Megan J.; Ryu, Tae Woo; Huoming Zhang; Michael Berumen; Nilsson, Göran E.; Munday, Philip L.; Timothy Ravasi. "Molecular signatures of transgenerational response to ocean acidification in a species of reef fish". Nature Climate Change 6 11 (2016): 1014-1018. http://hdl.handle.net/10754/622434.
    10.1038/nclimate3087
  32. Ryu, Tae Woo; Loqmane Seridi; Moitinho-Silva, Lucas; Oates, Matthew; Yi Jin Liew; Charalampos Mavromatis; Wang, Xiaolei; et al. "Hologenome analysis of two marine sponges with different microbiomes". BMC Genomics 17 1 (2016): http://hdl.handle.net/10754/600476.
    10.1186/s12864-016-2501-0
  33. Manuel Aranda; Yangyang Li; Yi Jin Liew; Sebastian Baumgarten; Simakov, O.; Wilson, M. C.; Piel, J.; et al. "Genomes of coral dinoflagellate symbionts highlight evolutionary adaptations conducive to a symbiotic lifestyle". Scientific Reports 6 1 (2016): http://hdl.handle.net/10754/622071.
    10.1038/srep39734
  34. Dineshram, Ramadoss; Kondethimmanahalli Chandramouli; Ko, Ginger Wai Kuen; Huoming Zhang; Qian, Pei-Yuan; Timothy Ravasi; Thiyagarajan, Vengatesen. "Quantitative analysis of oyster larval proteome provides new insights into the effects of multiple climate change stressors". Global Change Biology 22 6 (2016): 2054-2068. http://hdl.handle.net/10754/621623.
    10.1111/gcb.13249
  35. Sarah Al-Aqeel; Ryu, Tae Woo; Huoming Zhang; Kondethimmanahalli Chandramouli; Timothy Ravasi. "Transcriptome and Proteome Studies Reveal Candidate Attachment Genes during the Development of the Barnacle Amphibalanus Amphitrite". Frontiers in Marine Science 3 (2016): http://hdl.handle.net/10754/622715.
    10.3389/fmars.2016.00171
  36. Felix Servin, Laura P.; Jose Efrain Perez; MARIA F CONTRERAS G; Timothy Ravasi; Jürgen Kosel. "Cytotoxic effects of nickel nanowires in human fibroblasts". Toxicology Reports 3 (2016): 373-380. http://hdl.handle.net/10754/601122.
    10.1016/j.toxrep.2016.03.004
  37. Michael Margineanu; Khachatur Julfakyan; Sommer, Christoph; Jose Efrain Perez; MARIA F CONTRERAS G; niveen khashab; Jürgen Kosel; Timothy Ravasi. "Semi-automated quantification of living cells with internalized nanostructures". Journal of Nanobiotechnology 14 1 (2016): http://hdl.handle.net/10754/593682.
    10.1186/s12951-015-0153-x
  38. Liew, Y.J.; Ryu, T.; Aranda, M.; Ravasi, T.. "Erratum: Mirna Repertoires of Demosponges Stylissa Carteri and Xestospongia Testudinaria (PLoS ONE (2016) 11:2 (e0149080) DOI: 10.1371/journal.pone.0149080)". PLoS ONE 11 4 (2016): http://www.scopus.com/inward/record.url?eid=2-s2.0-84963729164&partnerID=MN8TOARS.
    10.1371/journal.pone.0153731
  39. Giles, Emily C.; Saenz Agudelo, Pablo; Hussey, Nigel E.; Timothy Ravasi; Michael Berumen. "Exploring seascape genetics and kinship in the reef sponge Stylissa carteri in the Red Sea". Ecology and Evolution 5 13 (2015): 2487-2502. http://hdl.handle.net/10754/556183.
    10.1002/ece3.1511
  40. MARIA F CONTRERAS G; Sougrat, Rachid; Zaher, Amir Omar; Timothy Ravasi; Jürgen Kosel. "Non-chemotoxic induction of cancer cell death using magnetic nanowires". International Journal of Nanomedicine (2015): 2141-2141. http://hdl.handle.net/10754/346981.
    10.2147/IJN.S77081
  41. Gregorio Alanis-Lobato; Cannistraci, Carlo Vittorio; Anders Eriksson; Manica, Andrea; Timothy Ravasi. "Highlighting nonlinear patterns in population genetics datasets". Scientific Reports 5 1 (2015): http://hdl.handle.net/10754/344117.
    10.1038/srep08140
  42. Kondethimmanahalli Chandramouli; Reish, Donald; Huoming Zhang; Pei-Yuan Qian; Timothy Ravasi. "Proteomic Changes Associated with Successive Reproductive Periods in Male Polychaetous Neanthes arenaceodentata". Scientific Reports 5 1 (2015): http://hdl.handle.net/10754/576983.
    10.1038/srep13561
  43. Kondethimmanahalli Chandramouli; Sarah Al-Aqeel; Ryu, Tae Woo; Huoming Zhang; Loqmane Seridi; Yanal Ghosheh; Qian, Pei-Yuan; Timothy Ravasi. "Transcriptome and proteome dynamics in larvae of the barnacle Balanus Amphitrite from the Red Sea". BMC Genomics 16 1 (2015): http://hdl.handle.net/10754/584004.
    10.1186/s12864-015-2262-1
  44. Bayer, Kristina; Moitinho-Silva, Lucas; Brümmer, Franz; Cannistraci, Carlo V.; Timothy Ravasi; Hentschel, Ute. "GeoChip-based insights into the microbial functional gene repertoire of marine sponges (high microbial abundance, low microbial abundance) and seawater". FEMS Microbiology Ecology 90 3 (2015): 832-843. http://hdl.handle.net/10754/556514.
    10.1111/1574-6941.12441
  45. Jose Efrain Perez; MARIA F CONTRERAS G; Vidal, Enrique Vilanova; Felix Servin, Laura P.; Michael Margineanu; Luongo, Giovanni; Porter, Alexandra E.; et al. "Cytotoxicity and intracellular dissolution of nickel nanowires". Nanotoxicology 10 7 (2015): 871-880. http://hdl.handle.net/10754/592811.
    10.3109/17435390.2015.1132343
  46. Cannistraci, C.V.; Alanis-Lobato, G.; Ravasi, T.. "Erratum: From link-prediction in brain connectomes and protein interactomes to the local-community-paradigm in complex networks". Scientific Reports 5 (2015): http://www.scopus.com/inward/record.url?eid=2-s2.0-84937509317&partnerID=MN8TOARS.
    10.1038/srep09794
  47. Charalampos Mavromatis; Bokil, Nilesh J.; Totsika, Makrina; Kakkanat, Asha; Schaale, Kolja; Cannistraci, Carlo V.; Ryu, Tae Woo; et al. "The co-transcriptome of uropathogenic Escherichia coli-infected mouse macrophages reveals new insights into host-pathogen interactions". Cellular Microbiology 17 5 (2015): 730-746. http://hdl.handle.net/10754/550523.
    10.1111/cmi.12397
  48. Veilleux, Heather D.; Ryu, Tae Woo; Donelson, Jennifer M.; van Herwerden, Lynne; Loqmane Seridi; Yanal Ghosheh; Michael Berumen; et al. "Molecular processes of transgenerational acclimation to a warming ocean". Nature Climate Change 5 12 (2015): 1074-1078. http://hdl.handle.net/10754/575089.
    10.1038/nclimate2724
  49. Huoming Zhang; Qian, Pei-Yuan; Timothy Ravasi. "Selective phosphorylation during early macrophage differentiation". PROTEOMICS 15 21 (2015): 3731-3743. http://hdl.handle.net/10754/576076.
    10.1002/pmic.201400511
  50. Hurst, L.D.; Ghanbarian, A.T.; Forrest, A.R.R.; Huminiecki, L.; Rehli, M.; Kenneth Baillie, J.; de Hoon, M.J.L.; et al. "The Constrained Maximal Expression Level Owing to Haploidy Shapes Gene Content on the Mammalian X Chromosome". PLoS Biology 13 12 (2015): http://www.scopus.com/inward/record.url?eid=2-s2.0-84969295765&partnerID=MN8TOARS.
    10.1371/journal.pbio.1002315
  51. Voolstra, C.R.; Miller, D.J.; Ragan, M.A.; Hoffmann, A.A.; Hoegh-Guldberg, O.; Bourne, D.G.; Ball, E.E.; et al. "The ReFuGe 2020 Consortium-using "omics" approaches to explore the adaptability and resilience of coral holobionts to environmental change". Frontiers in Marine Science 2 SEP (2015): http://www.scopus.com/inward/record.url?eid=2-s2.0-85008707903&partnerID=MN8TOARS.
    10.3389/fmars.2015.00068
  52. Moitinho-Silva, Lucas; Seridi, Loqmane; Ryu, Tae Woo; Christian R. Voolstra; Timothy Ravasi; Hentschel, Ute. "Revealing microbial functional activities in the Red Sea sponge S tylissa carteri by metatranscriptomics". Environmental Microbiology 16 12 (2014): 3683-3698. http://hdl.handle.net/10754/550163.
    10.1111/1462-2920.12533
  53. Harjes, Janno; Ryu, Tae Woo; Abdelmohsen, Usama Ramadan; Moitinho-Silva, Lucas; Horn, Hannes; Timothy Ravasi; Hentschel, Ute. "Draft Genome Sequence of the Antitrypanosomally Active Sponge-Associated Bacterium Actinokineospora sp. Strain EG49". Genome Announcements 2 2 (2014): e00160--14--e00160---e00160--14--e00160--. http://hdl.handle.net/10754/334598.
    10.1128/genomeA.00160-14
  54. Kondethimmanahalli Chandramouli; Qian, Pei-Yuan; Timothy Ravasi. "Proteomics insights: proteins related to larval attachment and metamorphosis of marine invertebrates". Frontiers in Marine Science 1 (2014): http://hdl.handle.net/10754/334953.
    10.3389/fmars.2014.00052
  55. Abdelmohsen, Usama Ramadan; Yang, Chen; Horn, Hannes; Dina Hajjar; Timothy Ravasi; Hentschel, Ute. "Actinomycetes from red sea sponges: Sources for chemical and phylogenetic diversity". Marine Drugs 12 5 (2014): 2771-2789. http://hdl.handle.net/10754/325360.
    10.3390/md12052771
  56. Chen, Zhang-Fan; Huoming Zhang; Wang, Hao; Matsumura, Kiyotaka; Wong, Yue Him; Timothy Ravasi; Qian, Pei-Yuan. "Quantitative proteomics study of larval settlement in the barnacle Balanus amphitrite". PLoS ONE 9 2 (2014): e88744-e88744. http://hdl.handle.net/10754/325336.
    10.1371/journal.pone.0088744
  57. Loqmane Seridi; Ryu, Tae Woo; Timothy Ravasi. "Dynamic Epigenetic Control of Highly Conserved Noncoding Elements". PLoS ONE 9 10 (2014): e109326-e109326. http://hdl.handle.net/10754/333746.
    10.1371/journal.pone.0109326
  58. Wong, Yue Him; Ryu, Tae Woo; Yanal Ghosheh; Qian, Pei-Yuan; Loqmane Seridi; Salim Bougouffa; Timothy Ravasi. "Transcriptome analysis elucidates key developmental components of bryozoan lophophore development". Scientific Reports 4 1 (2014): http://hdl.handle.net/10754/333562.
    10.1038/srep06534
  59. Zhang, Yu; Sun, Jin; Huoming Zhang; Kondethimmanahalli Chandramouli; Xu, Ying; He, Lisheng; Timothy Ravasi; Qian, Peiyuan. "Proteomic profiling during the pre-competent to competent transition of the biofouling polychaete Hydroides elegans". Biofouling 30 8 (2014): 921-928. http://hdl.handle.net/10754/563709.
    10.1080/08927014.2014.951341
  60. Forest, Alistair R R; Kawaji, Hideya; Rehli, Michael; Baillie, John Kenneth; De Hoon, Michiel Jl L; Haberle, Vanja; Lassmann, Timo; et al. "A promoter-level mammalian expression atlas". Nature 507 7493 (2014): 462-470. http://hdl.handle.net/10754/565944.
    10.1038/nature13182
  61. Gregorio Alanis-Lobato; Cannistraci, Carlo; Timothy Ravasi. "Exploitation of genetic interaction network topology for the prediction of epistatic behavior". Genomics 102 4 (2013): 202-208. http://hdl.handle.net/10754/563027.
    10.1016/j.ygeno.2013.07.010
  62. Moitinho-Silva, Lucas; Bayer, Kristina; Cannistraci, Carlo; Giles, Emily; Ryu, Tae Woo; Seridi, Loqmane; Timothy Ravasi; Hentschel, Ute T E. "Specificity and transcriptional activity of microbiota associated with low and high microbial abundance sponges from the Red Sea". Molecular Ecology 23 6 (2013): 1348-1363. http://hdl.handle.net/10754/562913.
    10.1111/mec.12365
  63. Kondethimmanahalli Chandramouli; Dash, Swagatika; Zhang, Yu; Timothy Ravasi; Qian, Peiyuan. "Proteomic and metabolomic profiles of marine Vibrio sp. 010 in response to an antifoulant challenge". Biofouling 29 7 (2013): 789-802. http://hdl.handle.net/10754/562885.
    10.1080/08927014.2013.805209
  64. Kondethimmanahalli Chandramouli; Sun, Jin; Mok, FloraSy; Liu, Lingli; Qiu, Jianwen; Timothy Ravasi; Qian, Peiyuan. "Transcriptome and quantitative proteome analysis reveals molecular processes associated with larval metamorphosis in the polychaete pseudopolydora vexillosa". Journal of Proteome Research 12 3 (2013): 1344-1358. http://hdl.handle.net/10754/562673.
    10.1021/pr3010088
  65. Cannistraci, Carlo; Ogorevc, Jernej; Zorc, Minja; Timothy Ravasi; Dovc, Peter; Kunej, Tanja. "Pivotal role of the muscle-contraction pathway in cryptorchidism and evidence for genomic connections with cardiomyopathy pathways in RASopathies". BMC Medical Genomics 6 1 (2013): http://hdl.handle.net/10754/325271.
    10.1186/1755-8794-6-5
  66. Cannistraci, Carlo; Gregorio Alanis-Lobato; Timothy Ravasi. "Minimum curvilinearity to enhance topological prediction of protein interactions by network embedding". Bioinformatics 29 13 (2013): i199-i209. http://hdl.handle.net/10754/325437.
    10.1093/bioinformatics/btt208
  67. Kondethimmanahalli Chandramouli; Timothy Ravasi; Reish, Donald; Qian, Pei-Yuan. "Proteomic Changes between Male and Female Worms of the Polychaetous Annelid Neanthes arenaceodentata before and after Spawning". PLoS ONE 8 8 (2013): e72990-e72990. http://hdl.handle.net/10754/325325.
    10.1371/journal.pone.0072990
  68. Giles, E.C.; Saenz-Agudelo, P.; Michael Berumen; Timothy Ravasi. "Novel polymorphic microsatellite markers developed for a common reef sponge, Stylissa carteri". Marine Biodiversity 43 3 (2013): 237-241. http://hdl.handle.net/10754/334514.
    10.1007/s12526-013-0151-x
  69. Cannistraci, C.V.; Alanis-Lobato, G.; Timothy Ravasi. "From link-prediction in brain connectomes and protein interactomes to the local-community-paradigm in complex networks.". Scientific reports 3 (2013): http://hdl.handle.net/10754/334511.
    10.1038/srep01613
  70. Bracken-Grissom, Heather; Collins, Allen G.; Collins, Timothy; Crandall, Keith; Distel, Daniel; Dunn, Casey; Giribet, Gonzalo; et al. "The Global Invertebrate Genomics Alliance (GIGA): Developing Community Resources to Study Diverse Invertebrate Genomes". Journal of Heredity 105 1 (2013): 1-18. http://hdl.handle.net/10754/575591.
    10.1093/jhered/est084
  71. Ammirati, Enrico; Cristell, Nicole A.; Cianflone, Domenico; Vermi, Anna Chiara; Marenzi, Giancarlo Carlo; De Metrio, Monica; Uren, Neal G.; et al. "Questing for circadian dependence in ST-segment-elevation acute myocardial infarction: A multicentric and multiethnic study". Circulation Research 112 10 (2013): e110-e114. http://hdl.handle.net/10754/566020.
    10.1161/CIRCRESAHA.112.300778
  72. Malas, T.B.; Timothy Ravasi. "Computational tools for genome-wide miRNA prediction and study". The Open Biology Journal 5 1 (2012): 23-30. http://hdl.handle.net/10754/334517.
    10.2174/1874196701205010023
  73. Ammirati, Enrico; Cannistraci, Carlo; Cristell, Nicole A.; Vecchio, Viviana; Palini, Alessio G.; Tornvall, Per; Paganoni, Anna Maria; et al. "Identification and predictive value of interleukin-6+ interleukin-10+ and interleukin-6-interleukin-10+ cytokine patterns in st-elevation acute myocardial infarction". Circulation Research 111 10 (2012): 1336-1348. http://hdl.handle.net/10754/562282.
    10.1161/CIRCRESAHA.111.262477
  74. Sun, Jin; Huoming Zhang; Wang, Hao; Heras, Horacio; Dreon, Marcos Sebastián; Ituarte, Santiago; Timothy Ravasi; Qian, Peiyuan; Qiu, Jianwen. "First proteome of the egg perivitelline fluid of a freshwater gastropod with aerial oviposition". Journal of Proteome Research 11 8 (2012): 4240-4248. http://hdl.handle.net/10754/562271.
    10.1021/pr3003613
  75. Giles, Emily; Kamke, Janine; Moitinho-Silva, Lucas; Taylor, Michael W.; Hentschel, Ute T E; Timothy Ravasi; Schmitt, Susanne. "Bacterial community profiles in low microbial abundance sponges". FEMS Microbiology Ecology 83 1 (2012): 232-241. http://hdl.handle.net/10754/562317.
    10.1111/j.1574-6941.2012.01467.x
  76. Ryu, Tae Woo; Seridi, Loqmane; Timothy Ravasi. "The evolution of ultraconserved elements with different phylogenetic origins". BMC Evolutionary Biology 12 1 (2012): 236-236. http://hdl.handle.net/10754/325238.
    10.1186/1471-2148-12-236
  77. Fan, Ming; Wong, Ka-Chun; Ryu, Tae Woo; Timothy Ravasi; Xin Gao. "SECOM: A novel hash seed and community detection based-approach for genome-scale protein domain identification". PLoS ONE 7 6 (2012): e39475-e39475. http://hdl.handle.net/10754/325305.
    10.1371/journal.pone.0039475
  78. Wong, Yue Him; Wang, Hao; Timothy Ravasi; Qian, Pei-Yuan. "Involvement of wnt signaling pathways in the metamorphosis of the bryozoan bugula neritina". PLoS ONE 7 3 (2012): e33323-e33323. http://hdl.handle.net/10754/325301.
    10.1371/journal.pone.0033323
  79. Abhinay Ramaprasad; Arnab Pain; Timothy Ravasi. "Defining the protein interaction network of human malaria parasite Plasmodium falciparum". Genomics 99 2 (2012): 69-75. http://hdl.handle.net/10754/565967.
    10.1016/j.ygeno.2011.11.006
  80. Bokil, Nilesh J.; Totsika, Makrina; Carey, Alison J.; Stacey, Katryn J.; Hancock, Viktoria; Saunders, Bernadette M.; Timothy Ravasi; et al. "Intramacrophage survival of uropathogenic Escherichia coli: Differences between diverse clinical isolates and between mouse and human macrophages". Immunobiology 216 11 (2011): 1164-1171. http://hdl.handle.net/10754/561905.
    10.1016/j.imbio.2011.05.011
  81. Ryu, Tae Woo; Charalampos Mavromatis; Bayer, Till; Christian R. Voolstra; Timothy Ravasi. "Unexpected complexity of the reef-building coral Acropora millepora transcription factor network.". BMC systems biology 5 1 (2011): 58-58. http://hdl.handle.net/10754/323513.
    10.1186/1752-0509-5-58
  82. Huoming Zhang; Wong, Yuehim; Wang, Hao; Chen, Zhangfan; Arellano, Shawn M.; Timothy Ravasi; Qian, Peiyuan. "Quantitative proteomics identify molecular targets that are crucial in larval settlement and metamorphosis of bugula neritina". Journal of Proteome Research 10 1 (2011): 349-360. http://hdl.handle.net/10754/564359.
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  83. Wang, Hao; Huoming Zhang; Wong, Yuehim; Christian R. Voolstra; Timothy Ravasi; Vladimir B Bajic; Vladimir Bajic; Qian, Peiyuan. "Rapid transcriptome and proteome profiling of a non-model marine invertebrate, Bugula neritina". PROTEOMICS 10 16 (2010): 2972-2981. http://hdl.handle.net/10754/561511.
    10.1002/pmic.201000056
  84. Kuo, D.; Licon, K.; Bandyopadhyay, S.; Chuang, R.; Luo, C.; Catalana, J.; Timothy Ravasi; Tan, K.; Ideker, T.. "Coevolution within a transcriptional network by compensatory trans and cis mutations". Genome Research 20 12 (2010): 1672-1678. http://hdl.handle.net/10754/555797.
    10.1101/gr.111765.110
  85. Wong, Yue Him; Arellano, Shawn M; Huoming Zhang; Timothy Ravasi; Qian, Pei-Yuan. "Dependency on de novo protein synthesis and proteomic changes during metamorphosis of the marine bryozoan Bugula neritina". Proteome Science 8 1 (2010): 25-25. http://hdl.handle.net/10754/325256.
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  86. Ravasi, T.; Suzuki, H.; Cannistraci, C.V.; Katayama, S.; Bajic, V.B.; Tan, K.; Akalin, A.; et al. "An atlas of combinatorial transcriptional regulation in mouse and man". Cell 141 2 (2010): 369-369. http://www.scopus.com/inward/record.url?eid=2-s2.0-77951874928&partnerID=MN8TOARS.
    10.1016/j.cell.2010.04.004
  87. Kuo, D.; Tan, K.; Zinman, G.; Ravasi, T.; Bar-Joseph, Z.; Ideker, T.; Kuo, Dwight; et al. "Evolutionary divergence in the fungal response to fluconazole revealed by soft clustering.". Genome biology 11 7 (2010): R77-R77. http://www.scopus.com/inward/record.url?eid=2-s2.0-77954794984&partnerID=MN8TOARS.
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  88. Timothy Ravasi; Suzuki, Harukazu; Cannistraci, Carlo; Katayama, Shintaro; Vladimir B Bajic; Vladimir Bajic; Tan, Kai; Akalin, Altuna; et al. "An Atlas of Combinatorial Transcriptional Regulation in Mouse and Man". Cell 140 5 (2010): 744-752. http://hdl.handle.net/10754/575669.
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  89. RamachandraRao, Satish Posettihalli; Talwar, Priti; Timothy Ravasi; Sharma, Kumar. "Novel systems biology insights using antifibrotic approaches for diabetic kidney disease". Expert Review of Endocrinology and Metabolism 5 1 (2010): 127-135. http://hdl.handle.net/10754/575667.
    10.1586/eem.09.72
  90. Huoming Zhang; Zhao, Changqing; Li, Xin; Zhu, Yi; Gan, Chee Sian; Wang, Yong; Timothy Ravasi; et al. "Study of monocyte membrane proteome perturbation during lipopolysaccharide-induced tolerance using iTRAQ-based quantitative proteomic approach". PROTEOMICS 10 15 (2010): 2780-2789. http://hdl.handle.net/10754/575541.
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  91. Suzuki, H.; Forrest, A.R.R.; Van Nimwegen, E.; Daub, C.O.; Balwierz, P.J.; Irvine, K.M.; Lassmann, T.; et al. "The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line". Nature Genetics 41 5 (2009): 553-562. http://www.scopus.com/inward/record.url?eid=2-s2.0-65149083962&partnerID=MN8TOARS.
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  92. Gersten, M.; Alirezaei, M.; Marcondes, M.C.G.; Flynn, C.; Ravasi, T.; Ideker, T.; Fox, H.S.. "An integrated systems analysis implicates EGR1 downregulation in simian immunodeficiency virus encephalitis-induced neural dysfunction". Journal of Neuroscience 29 40 (2009): 12467-12476. http://www.scopus.com/inward/record.url?eid=2-s2.0-70349883847&partnerID=MN8TOARS.
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  93. RamachandraRao, S.P.; Zhu, Y.; Ravasi, T.; McGowan, T.A.; Toh, I.; Dunn, S.R.; Okada, S.; Shaw, M.A.; Sharma, K.. "Pirfenidone is renoprotective in diabetic kidney disease". Journal of the American Society of Nephrology 20 8 (2009): 1765-1775. http://www.scopus.com/inward/record.url?eid=2-s2.0-68149178848&partnerID=MN8TOARS.
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  94. Tan, K.; Tegner, J.; Ravasi, T.. "Integrated approaches to uncovering transcription regulatory networks in mammalian cells". Genomics 91 3 (2008): 219-231. http://www.scopus.com/inward/record.url?eid=2-s2.0-39149109286&partnerID=MN8TOARS.
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  95. Tan, K.; Feizi, H.; Luo, C.; Fan, S.H.; Ravasi, T.; Ideker, T.G.. "A systems approach to delineate functions of paralogous transcription factors: Role of the Yap family in the DNA damage response". Proceedings of the National Academy of Sciences of the United States of America 105 8 (2008): 2934-2939. http://www.scopus.com/inward/record.url?eid=2-s2.0-42949156828&partnerID=MN8TOARS.
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  97. Hinshelwood, R.A.; Huschtscha, L.I.; Melki, J.; Stirzaker, C.; Abdipranoto, A.; Vissel, B.; Ravasi, T.; et al. "Concordant epigenetic silencing of transforming growth factor-ß signaling pathway genes occurs early in breast carcinogenesis". Cancer Research 67 24 (2007): 11517-11527. http://www.scopus.com/inward/record.url?eid=2-s2.0-37549060948&partnerID=MN8TOARS.
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  99. Ripoll, V.M.; Irvine, K.M.; Ravasi, T.; Sweet, M.J.; Hume, D.A.. "Gpnmb is induced in macrophages by IFN-¿ and lipopolysaccharide and acts as a feedback regulator of proinflammatory responses". Journal of Immunology 178 10 (2007): 6559-6566. http://www.scopus.com/inward/record.url?eid=2-s2.0-34248226374&partnerID=MN8TOARS.
  100. Sasmono, R.T.; Ehrnsperger, A.; Cronau, S.L.; Ravasi, T.; Kandane, R.; Hickey, M.J.; Cook, A.D.; et al. "Mouse neutrophilic granulocytes express mRNA encoding the macrophage colony-stimulating factor receptor (CSF-1R) as well as many other macrophage-specific transcripts and can transdifferentiate into macrophages in vitro in response to CSF-1". Journal of Leukocyte Biology 82 1 (2007): 111-123. http://www.scopus.com/inward/record.url?eid=2-s2.0-34347405754&partnerID=MN8TOARS.
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  102. Bode, K.A.; Schroder, K.; Hume, D.A.; Ravasi, T.; Heeg, K.; Sweet, M.J.; Dalpke, A.H.. "Histone deacetylase inhibitors decrease Toll-like receptor-mediated activation of proinflammatory gene expression by impairing transcription factor recruitment". Immunology 122 4 (2007): 596-606. http://www.scopus.com/inward/record.url?eid=2-s2.0-35948983828&partnerID=MN8TOARS.
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  103. Schroder, K.; Lichtinger, M.; Irvine, K.M.; Brion, K.; Trieu, A.; Ross, I.L.; Ravasi, T.; et al. "PU.1 and ICSBP control constitutive and IFN-¿-regulated Tlr9 gene expression in mouse macrophages". Journal of Leukocyte Biology 81 6 (2007): 1577-1590. http://www.scopus.com/inward/record.url?eid=2-s2.0-34249665503&partnerID=MN8TOARS.
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  106. Himes, S.R.; Sester, D.P.; Ravasi, T.; Cronau, S.L.; Sasmono, T.; Hume, D.A.. "The JNK are important for development and survival of macrophages". Journal of Immunology 176 4 (2006): 2219-2228. http://www.scopus.com/inward/record.url?eid=2-s2.0-32044447243&partnerID=MN8TOARS.
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  110. Tegnér, J.; Nilsson, R.; Bajic, V.B.; Björkegren, J.; Ravasi, T.. "Systems biology of innate immunity". Cellular Immunology 244 2 (2006): 105-109. http://www.scopus.com/inward/record.url?eid=2-s2.0-34248576293&partnerID=MN8TOARS.
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  111. Aagaard, A.; Listwan, P.; Cowieson, N.; Huber, T.; Ravasi, T.; Wells, C.A.; Flanagan, J.U.; et al. "An inflammatory role for the mammalian carboxypeptidase inhibitor latexin: Relationship to cystatins and the tumor suppressor TIG1". Structure 13 2 (2005): 309-317. http://www.scopus.com/inward/record.url?eid=2-s2.0-13844281179&partnerID=MN8TOARS.
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  115. Wells, C.A.; Ravasi, T.; Hume, D.A.. "Inflammation suppressor genes: Please switch out all the lights". Journal of Leukocyte Biology 78 1 (2005): 9-13. http://www.scopus.com/inward/record.url?eid=2-s2.0-22144464423&partnerID=MN8TOARS.
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  116. Rehli, M.; Sulzbacher, S.; Pape, S.; Ravasi, T.; Wells, C.A.; Heinz, S.; Söllner, L.; et al. "Transcription factor Tfec contributes to the IL-4-inducible expression of a small group of genes in mouse macrophages including the granulocyte colony-stimulating factor receptor". Journal of Immunology 174 11 (2005): 7111-7122. http://www.scopus.com/inward/record.url?eid=2-s2.0-21044457085&partnerID=MN8TOARS.
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  117. Sester, D.P.; Trieu, A.; Brion, K.; Schroder, K.; Ravasi, T.; Robinson, J.A.; McDonald, R.C.; et al. "LPS regulates a set of genes in primary murine macrophages by antagonising CSF-1 action". Immunobiology 210 2-4 (2005): 97-107. http://www.scopus.com/inward/record.url?eid=2-s2.0-22644447586&partnerID=MN8TOARS.
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  125. Ravasi, T.; Wells, C.; Forrest, A.; Underhill, D.M.; Wainwright, B.J.; Aderem, A.; Grimmond, S.; Hume, D.A.. "Generation of diversity in the innate immune system: Macrophage heterogeneity arises from gene-autonomous transcriptional probability of individual inducible genes". Journal of Immunology 168 1 (2002): 44-50. http://www.scopus.com/inward/record.url?eid=2-s2.0-0036134881&partnerID=MN8TOARS.
    10.4049/jimmunol.168.1.44
  126. Ravasi, T.; Wells, C.; Forrest, A.; Underhill., D.M.; Wainwright, B.J.; Aderem, A.; Grimmond, S.; Hume, D.A.. "Erratum: Generation of diversity in the innate immune system: Macrophage heterogeneity arises from gene-autonomous transcriptional probability of individual inducible genes (The Journal of Immunology (2002) 168 (44-50))". Journal of Immunology 168 3 (2002): 1497-1497. http://www.scopus.com/inward/record.url?eid=2-s2.0-0036467472&partnerID=MN8TOARS.
  127. Wardrop, S.L.; Wells, C.; Ravasi, T.; Hume, D.A.; Richardson, D.R.. "Induction of Nramp2 in activated mouse macrophages is dissociated from regulation of the Nramp1, classical inflammatory genes, and genes involved in iron metabolism". Journal of Leukocyte Biology 71 1 (2002): 99-106. http://www.scopus.com/inward/record.url?eid=2-s2.0-0036141414&partnerID=MN8TOARS.
  128. Okazaki, Y.; Furuno, M.; Kasukawa, T.; Adachi, J.; Bono, H.; Kondo, S.; Nikaido, I.; et al. "Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs". Nature 420 6915 (2002): 563-573. http://www.scopus.com/inward/record.url?eid=2-s2.0-0142104045&partnerID=MN8TOARS.
    10.1038/nature01266
  129. Hume, D.A.; Ross, I.L.; Himes, S.R.; Sasmono, R.T.; Wells, C.A.; Ravasi, T.. "The mononuclear phagocyte system revisited". Journal of Leukocyte Biology 72 4 (2002): 621-627. http://www.scopus.com/inward/record.url?eid=2-s2.0-0036826744&partnerID=MN8TOARS.
Working paper
  1. Professor, Timothy. 2019. "AGO1 in association with NEAT1 lncRNA contributes to nuclear and 3D chromatin architecture in human cells". http://hdl.handle.net/10754/660475.
    10.1101/525527

Intellectual property

Patent
  1. Jürgen Kosel; Timothy Ravasi; Contreras Gerenas, Maria Fernanda. 2013. "Biofunctionalized Magnetic Nanowires".

Other

Dataset
  1. Professor, Timothy. Supplementary Material for: Transcriptome and proteome dynamics in larvae of the barnacle Balanus Amphitrite from the Red Sea.
    10.6084/m9.figshare.c.3629591
  2. Professor, Timothy. Accession data for analysed Xestospongia testudinaria metatranscriptomes, supplement to: Jahn, Martin T; Markert, Sebastian M; Ryu, Taewoo; Ravasi, Timothy; Stigloher, Christian; Hentschel, Ute; Moitinho-Silva, Lucas (2016): Shedding light on cell compartmentation in the candidate phylum Poribacteria by high resolution visualisation and transcriptional profiling. Scientific Reports, 6, 35860.
    10.1594/PANGAEA.868922
  3. Professor, Timothy. Supplementary Material for: Hologenome analysis of two marine sponges with different microbiomes.
    10.6084/m9.figshare.c.3597026
  4. Professor, Timothy. Quantitative analysis of oyster larval proteome provides new insights into the effects of multiple climate change stressors, supplement to: Dineshram, R; Chandramouli, K; Ko, W K Ginger; Zhang, Huoming; Qian, Pei Yuan; Ravasi, Timothy; Thiyagarajan, Vengatesen (2016): Quantitative analysis of oyster larval proteome provides new insights into the effects of multiple climate change stressors. Global.
    10.1594/PANGAEA.867318
  5. Professor, Timothy. Data from: Exploring seascape genetics and kinship in the reef sponge Stylissa carteri in the Red Sea.
    10.5061/DRYAD.H2H08
  6. Professor, Timothy. Supplementary Material for: Methamphetamine abuse affects gene expression in brain-derived microglia of SIV-infected macaques to enhance inflammation and promote virus targets.
    10.6084/m9.figshare.c.3611954
  7. Professor, Timothy. Supplementary Material for: Cytotoxicity and intracellular dissolution of nickel nanowires.
    10.6084/M9.FIGSHARE.C.2169857
  8. Professor, Timothy. Supplementary Material for: Astrocyte-specific overexpressed gene signatures in response to methamphetamine exposure in vitro.
    10.6084/m9.figshare.c.3713953
Other output
  1. Probing SWATH-MS as a tool for proteome level quantification in a non-model fish. 2020. Alison A. Monroe; Huoming Zhang; Celia Schunter; Timothy Ravasi. https://doi.org/10.1101/2020.02.23.946913.
    10.1101/2020.02.23.946913
  2. Transcription regulatory networks analysis using CAGE. 2009. Tegnér, Jesper N.; Björkegren, Johan L M; Timothy Ravasi; Bajic, Vladimir; Tegnér, J.; Björkegren, J.; Ravasi, T.; Bajic, V.B.. http://hdl.handle.net/10754/575855.
    10.4032/9789814241359
Distinctions

Title

2010 Permanent Visiting Scientist
Rikagaku Kenkyujo Ito Saibo Seigyo Kagaku Kenkyushitsu, Japan
2009 Adjunt Professor