Fábio António Gouveia Ferreira Martins (D31C-DA02-9351)

Curriculum Vitae

Fábio António Gouveia Ferreira Martins

Fábio António Gouveia Ferreira Martins. Concluiu o Mestrado em Bioquímica em 2020/12/04 pela Faculdade de Ciências e Instituto de Ciências Biomédicas Abel Salazar da Universidade do Porto Faculdade de Ciências. Concluiu a Licenciatura em Bioquímica em 2018/07/05 pela Universidade do Minho. Frequenta o Programa Doutoral em Biomedicina pela Faculdade de Medicina da Universidade do Porto desde 2021/11/01. É Estagiário de Investigação no BioSIM - Biomolecular SIMulations Research Group, Portugal. Publicou 7 artigos em revistas especializadas. Apresentou 9 apresentações orais e 6 posters. Atua na área de Ciências Biológicas com ênfase em Bioquímica Computacional. Tem experiência em diferentes métodos computacionais que incluem: Molecular Docking, Virtual Screening, Simulações de Dinâmica Molecular e Cálculos de Energia Livre.

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Identification

Personal identification

Full name: Fábio António Gouveia Ferreira Martins

Citation names

Martins, Fábio
Martins, Fábio G.

Author identifiers

Ciência ID: D31C-DA02-9351
ORCID iD: 0000-0001-6257-8885
Researcher Id: AAH-4358-2021
Scopus Author Id: 57221734718

Email addresses

up201804374@edu.med.up.pt (Professional)
fabiogfmartins@gmail.com (Professional)

Addresses

CIM-FMUP - Centro de Investigação Médica da Faculdade de Medicina da Universidade do Porto Departamento de Biomedicina (Biologia Experimental), BioSIM - Laboratório 22P4EP Rua Doutor Plácido da Costa, 4200-450 , Porto, Porto, Portugal (Professional)

Websites

https://biosim.pt/fabio-martins/ (Professional)

Knowledge fields

Natural sciences - Biological Sciences - Biochemistry

Languages

Language	Speaking	Reading	Writing	Listening	Peer-review
Portuguese (Mother tongue)
English	Advanced (C1)	Advanced (C1)	Advanced (C1)	Advanced (C1)	Advanced (C1)

Education

	Degree	Classification
2021/11/01 - 2025/10/31 Ongoing	Biomedicina (Doutoramento) Universidade do Porto Faculdade de Medicina, Portugal
2021/03/01 - 2021/06 Concluded	Culturas na Produção de Conhecimento em Ciência (Outros) Universidade do Porto Instituto de Ciências Biomédicas Abel Salazar, Portugal
2018/10 - 2020/12/04 Concluded	Bioquímica (Mestrado) Universidade do Porto Faculdade de Ciências, Portugal Universidade do Porto Instituto de Ciências Biomédicas Abel Salazar, Portugal "Identification of New Drugs Against Biofilm Formation and Development" (THESIS/DISSERTATION)	18
2015/09 - 2018/07/05 Concluded	Bioquímica (Licenciatura) Universidade do Minho, Portugal	15
2012/09 - 2015/06 Concluded	Ciências e Tecnologias (Ensino secundário) Escola Secundária de Tomaz Pelayo, Portugal	17

Affiliation

Science

	Category Host institution	Employer
2024/10/06 - 2024/10/16	Visiting Researcher (Research)	Suomen Akatemia, Finland
	Itä-Suomen yliopisto - Kuopion kampus, Finland
2021/05/01 - 2021/10/31	Research Trainee (Research)	REQUIMTE Unidade de Ciências Biomoleculares Aplicadas, Portugal
	BioSIM - Biomolecular SIMulations Research Group, Portugal

Teaching in Higher Education

	Category Host institution	Employer
2023/09/18 - 2024/07/31	Invited Assistant (Polytechnic Teacher)	Instituto Politécnico do Porto Escola Superior de Saúde, Portugal
	Instituto Politécnico do Porto Escola Superior de Saúde, Portugal
2022/09/19 - 2023/07/31	Invited Assistant (Polytechnic Teacher)	Instituto Politécnico do Porto Escola Superior de Saúde, Portugal
	Instituto Politécnico do Porto Escola Superior de Saúde, Portugal

Others

	Category Host institution	Employer
2021/10/01 - Current	Projeto Doutoramento - Rational Development of Nanomedicines for Cardiovascular Diseases	Fundação para a Ciência e a Tecnologia, Portugal
	Universidade do Porto Faculdade de Medicina, Portugal
2019/12 - 2020/12/04	Projeto Estágio de Mestrado - Identification of New Drugs Against Biofilm Formation and Development	REQUIMTE, Portugal
	Universidade do Porto Faculdade de Medicina, Portugal
2018/04 - 2018/07	Projeto Estágio de Licenciatura - Estudo de marcas epigenéticas em tecidos dormentes vs não dormentes de gomos e flores de Q. suber	Universidade do Minho, Portugal
	Universidade do Minho, Portugal

Outputs

Publications

Conference poster	Martins, Fábio G.; Sousa, Sérgio F.. "Optimizing Doxorubicin Delivery in Cancer Treatment with Lysinated Multiwalled Carbon Nanotubes: A Molecular Dynamics Study". Paper presented in Encontro Ciência 2024, 2024. Martins, Fábio G.; Sousa, Sérgio F.. "Molecular Dynamics Simulatons of Lysinated Multwalled Carbon Nanotubes for Enhanced Delivery of Doxorubicin in Cancer Therapy". Paper presented in 6th Meeting in Medicinal Biotechnology, 2024. Martins, Fábio G.; Fernandes, Henrique; Magalhães, Rita P.; Vieira, Tatiana F.; Sousa, Sérgio F.. "Computer-Guided Development of New Drugs Against COVID-19". Paper presented in 3D-BioInfo-PT Meeting, 2022. Martins, Fábio G.; Fernandes, Henrique; Magalhães, Rita P.; Vieira, Tatiana F.; Sousa, Sérgio F.. "Computer-Guided Development of Novel Drugs Against SARS-CoV-2". Paper presented in Medicinal Biotechnology // 5th Meeting and 2nd Iberian Congress, 2022. Martins, Fábio G.; Vieira, Tatiana F.; Moreira, Joel P.; Barbosa, Tiago; Sousa, Sérgio F.. "Specialized Multi-Level Computational Protocol for the Identification of Potential New Drugs". Paper presented in Encontro de Jovens Investigadores em Biologia Computacional Estrutural 2021, 2021. Martins, Fábio; Melo, André; Sousa, Sérgio F.. Corresponding author: Martins, Fábio. "Specialised Multi-Level Computational Approach For The Identification of Novel Quorum Sensing Inhibitors". Paper presented in EMBO: Advances and Challenges in Biomolecular Simulations Workshop, 2021.
Journal article	Fernandes, Susana; Sousa, Mariana; Martins, Fábio G.; Simões, Manuel; Sousa, Sérgio F.. "Protocol for in silico characterization of natural-based molecules as quorum-sensing inhibitors". STAR Protocols 5 4 (2024): 103367. http://dx.doi.org/10.1016/j.xpro.2024.103367. 10.1016/j.xpro.2024.103367 Chanchal Kiran Thakur; Fábio G. Martins; Chandrabose Karthikeyan; Subhasmita Bhal; Chanakya Nath Kundu; N. S. Hari Narayana Moorthy; Sérgio F. Sousa. "In silico-guided discovery and in vitro validation of novel sugar-tethered lysinated carbon nanotubes for targeted drug delivery of doxorubicin". Journal of Molecular Modeling (2024): https://doi.org/10.1007/s00894-024-06061-5. 10.1007/s00894-024-06061-5 Fábio G. Martins; Chanchal Kiran Thakur; Chandrabose Karthikeyan; N.S. Hari Narayana Moorthy; Sérgio F. Sousa. "Use of lysinated multiwalled carbon nanotubes with carbohydrate ligands as a doxorubicin nanocarrier: A molecular dynamics analysis". Carbon Trends (2023): https://doi.org/10.1016/j.cartre.2023.100280. 10.1016/j.cartre.2023.100280 E. Mauro; D. Lapaillerie; C. Tumiotto; C. Charlier; Martins, Fábio G.; Sergio F. Sousa; M. Métifiot; et al. "Modulation of the functional interfaces between retroviral intasomes and the human nucleosome". mBio (2023): http://dx.doi.org/10.1128/mbio.01083-23. 10.1128/mbio.01083-23 Lapaillerie, Delphine ; Charlier, Cathy ; Guyonnet-Dupérat, Véronique ; Murigneux, Emilie; Fernandes, Henrique; Martins, Fábio G.; Magalhães, Rita P.; et al. "Selection of Bis-Indolyl Pyridines and Triphenylamines as New Inhibitors of SARS-CoV-2 Cellular Entry by Modulating the Spike Protein/ACE2 Interfaces.". Antimicrobial agents and chemotherapy (2022): https://europepmc.org/articles/PMC9380551. 10.1128/aac.00083-22 Tatiana F. Vieira; Fábio G. Martins; Joel P. Moreira; Tiago Barbosa; Sérgio F. Sousa. "In Silico Identification of Possible Inhibitors for Protein Kinase B (PknB) of Mycobacterium tuberculosis". Molecules 26 20 (2021): 6162-6162. https://doi.org/10.3390/molecules26206162. 10.3390/molecules26206162 Fábio G. Martins; André Melo; Sérgio F. Sousa. "Identification of New Potential Inhibitors of Quorum Sensing through a Specialized Multi-Level Computational Approach". Molecules 26 9 (2021): 2600-2600. https://doi.org/10.3390/molecules26092600. Published • 10.3390/molecules26092600 Martins, Fábio G.; Melo, André; Sousa, Sérgio F.. "Databases for the study of biofilms: current status and potential applications". Biofouling 37 1 (2021): 96-108. https://doi.org/10.1080/08927014.2021.1876849. 10.1080/08927014.2021.1876849
Thesis / Dissertation	Martins, Fábio G.. "Identification of New Drugs Against Biofilm Formation and Development". Master, Universidade do Porto Faculdade de Ciências, 2020. https://sigarra.up.pt/fcup/pt/pub_geral.pub_view?pi_pub_base_id=441999.

Activities

Oral presentation

	Presentation title	Event name Host (Event location)
2024/11/14	A Computational Strategy for the Design of Targeted Nanomedicines in Cardiovascular Diseases	XXVIII Encontro Galego-Português de Química Colegio Oficial de Químicos de Galicia (Vigo, Spain)
2024/10/29	Use of HPC Computing for Accelerating Drug Discovery Targeting the SARS-CoV-2 S-RDB/ACE2 Interaction	IBERGRID 2024 Faculdade de Medicina da Universidade do Porto (Porto, Portugal)
2024/10/25	Development of a Computational Protocol for the Rational Design of Nanomedicines Aimed at Cardiovascular Diseases	XXII National Congress of Biochemistry Sociedade Portuguesa de Bioquímica (Aveiro, Portugal)
2024/05/10	Exploring pH-dependent Dynamics Of Doxorubicin Delivery Using Functionalized Multi-walled Carbon Nanotubes: Insights From Molecular Dynamics Simulations	Biophysics Festival - 4th Meeting of Young Biophysics Sociedade Portuguesa de Biofísica (Covilhã, Portugal)
2023/12/18	Lysinated multiwalled carbon nanotubes with carbohydrate ligands as a doxorubicin nanocarrier: A MD analysis	3D-BIOINFO-PT Annual Meeting Universidade de Coimbra Faculdade de Ciências e Tecnologia (Coimbra, Portugal)
2023/11/24	Molecular dynamics simulations for the study of lysinated multiwalled carbon nanotubes as doxorubicin nanocarriers	XXVII Encontro Luso Galego de Química Sociedade Portuguesa de Química (Porto, Portugal)
2023/01/18	New Inhibitors of SARS-CoV-2 Cellular Entry Modulating the Spike Protein/ACE2 Interfaces	BioSeminars@UCIBIO UCIBIO (Portugal)
2022/11/09	Computer-Guided Development of Novel Drugs Against SARS-CoV-2: From Virtual Screening to the Patents	BioData.pt Talks: 3D BioTalks \| Session 7 BioData.pt (Portugal)
2021/10/08	Identification of Potential Quorum Sensing Inhibitors through Structure-based Virtual Screening, Molecular Dynamics, and Free Energy Calculations	e - Conference on Innovation in Microbial Control Universidade do Porto (Porto, Portugal)
2021/06/23	Specialized multi-level computational approach for the identification of novel quorum sensing inhibitors	The 24th meeting of the International Society for Molecular Recognition - Affinity 2021 (Portugal)
2021/05	Structure-based virtual screening, Molecular Dynamics and free energy calculations for the identification of novel inhibitors against biofilm formation by C.violaceum	Bioinformatics Open Days Edition X Universidade do Minho (Braga, Portugal)
2021/05	Structure-based Virtual Screening, Molecular Dynamics and Free Energy calculations for the identification of New Quorum Sensing Inhibitors	Encontro de Investigação Jovem da Universidade do Porto -14ª edição Universidade do Porto (Porto, Portugal)

Event organisation

	Event name Type of event (Role)	Institution / Organization
2022/09/15 - 2022/09/15	Biofilms@UP (2022/09/15 - 2022/09/15) Conference (Co-organisor)	Universidade do Porto, Portugal

Event participation

	Activity description Type of event	Event name Institution / Organization
2024/11/26 - 2024/11/28	BioExcel / EuroCC Workshop Coimbra 2024 Workshop	BioExcel / EuroCC Workshop Universidade de Coimbra, Portugal
2024/11/13 - 2024/11/15	XXVIII Encontro Galego-Português de Química Meeting	XXVIII Encontro Galego-Português de Química Sociedade Portuguesa de Química, Portugal Colegio Oficial de Químicos de Galicia, Spain
2024/10/28 - 2024/10/30	13th Iberian Grid Conference - IBERGRID 2024 Conference	13th Iberian Grid Conference - IBERGRID 2024 Universidade do Porto Faculdade de Medicina, Portugal
2024/10/24 - 2024/10/26	XXII National Congress of Biochemistry Congress	XXII National Congress of Biochemistry Sociedade Portuguesa de Bioquímica, Portugal Universidade de Aveiro, Portugal
2024/10/08 - 2024/10/09	DrugTech RC Ruska Event 2024 Conference	DrugTech RC Ruska Event 2024 Itä-Suomen yliopisto, Finland
2024/07/03 - 2024/07/05	Encontro Ciência 2024 Meeting	Encontro Ciência 2024 Fundação para a Ciência e a Tecnologia, Portugal Universidade do Porto, Portugal
2024/05/17 - 2024/05/17	6th Meeting in Medicinal Biotechnology Meeting	6th Meeting in Medicinal Biotechnology Instituto Politécnico do Porto Escola Superior de Saúde, Portugal
2024/05/09 - 2024/05/10	Biophysics Festival - 4th Meeting of Young Biophysics Meeting	Biophysics Festival - 4th Meeting of Young Biophysics Universidade da Beira Interior Faculdade de Ciências, Portugal
2024/04/12 - 2024/04/12	3D-BioInfo-PT Advanced Workshop April 12th 2024 at ULisboa Workshop	3D-BioInfo-PT Advanced Workshop Universidade de Lisboa, Portugal
2023/12/18 - 2023/12/18	3D-BIOINFO-PT Annual Meeting Meeting	3D-BIOINFO-PT Annual Meeting Universidade de Coimbra Faculdade de Ciencias e Tecnologia, Portugal
2023/11/22 - 2023/11/24	XXVII Encontro Luso Galego de Química Meeting	XXVII Encontro Luso Galego de Química Sociedade Portuguesa de Química, Portugal
2023/06/15 - 2023/06/16	3D-BioInfo-PT Advanced Workshop Workshop	3D-BioInfo-PT Advanced Workshop Universidade de Coimbra, Portugal
2022/12/21 - 2022/12/21	3D-BioInfo-PT Meeting Meeting	3D-BioInfo-PT Meeting Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal
2022/12/19 - 2022/12/20	3D-BioInfo-PT Intermediate Workshop Workshop	3D-BioInfo-PT Intermediate Workshop Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica, Portugal
2022/10/21 - 2022/10/21	Medicinal Biotechnology // 5th Meeting and 2nd Iberian Congress Congress	Medicinal Biotechnology // 5th Meeting and 2nd Iberian Congress Instituto Politécnico do Porto Escola Superior de Saúde, Portugal
2021/12/21 - 2021/12/21	Computational Structural Biology Tools Workshop, in Coimbra, Portugal Workshop	Computational Structural Biology Tools Workshop
2021/12/20 - 2021/12/20	Encontro de Jovens Investigadores em Biologia Computacional Estrutural 2021 Meeting	Encontro de Jovens Investigadores em Biologia Computacional Estrutural 2021 Universidade de Coimbra, Portugal
2021/10/19 - 2021/10/19	EMBO: Advances and Challenges in Biomolecular Simulations Workshop Workshop	EMBO: Advances and Challenges in Biomolecular Simulations Workshop
2021/10/08 - 2021/10/08	e - Conference on Innovation in Microbial Control Conference	e - Conference on Innovation in Microbial Control Universidade do Porto, Portugal
2021/09/09 - 2021/09/10	GROMACS workshop Workshop	GROMACS workshop BioData.pt, Portugal
2021/06/23 - 2021/06/23	The 24th meeting of the International Society for Molecular Recognition - Affinity 2021 Meeting	The 24th meeting of the International Society for Molecular Recognition - Affinity 2021
2021/05/05 - 2021/05/07	Encontro de Investigação Jovem da Universidade do Porto -14ª edição Meeting	Encontro de Investigação Jovem da Universidade do Porto -14ª edição Universidade do Porto, Portugal
2021/05/05 - 2021/05/07	Bioinformatics Open Days Edition X	Bioinformatics Open Days Edition X Universidade do Minho, Portugal
2020/01/13 - 2020/03/02	BioSIM Cycle of Conferences Seminar	BioSIM Cycle of Conferences Universidade do Porto Faculdade de Medicina, Portugal
2018/04/10 - 2018/04/11	IX Jornadas de Bioquímica da Universidade do Minho Seminar	IX Jornadas de Bioquímica Universidade do Minho, Portugal
2016/04/05 - 2016/04/06	VII Jornadas de Bioquímica da Universidade do Minho Seminar	VII Jornadas de Bioquímica Universidade do Minho, Portugal
2015/03/13 - 2015/03/15	Inter-Regional Forum of the European Youth Parliament - Guimarães 2015 Other	Inter-Regional Forum of the European Youth Parliament - Guimarães 2015

Jury of academic degree

	Topic Role	Candidate name (Type of degree) Institution / Organization
2024/07/15	Automation of Adipocyte and Lipid Droplet Analysis: Improving Efficiency and Reliability with Supervised Machine Learning (Thesis) Main arguer	Mariana Tavares Viana (Other) Instituto Politécnico do Porto Escola Superior de Saúde, Portugal

Association member

	Society Organization name	Role
2024/05/06 - Current	Sociedade Portuguesa de Química
2024/05/02 - Current	Sociedade Portuguesa de Bioquímica
2024/05/02 - Current	Sociedade Portuguesa de Biofísica

Course / Discipline taught

	Academic session	Degree Subject (Type)	Institution / Organization
2024/02/14 - 2024/06/26	Laboratórios de Biotecnologia Molecular e Modelação in silico	Licenciatura em Biotecnologia Medicinal	Instituto Politécnico do Porto Escola Superior de Saúde, Portugal
2023/12/19 - 2023/12/19	3D-BioInfo-PT Intermediate Workshop: Protein-ligand docking and library preparation for virtual screening	(Outros)	Universidade de Coimbra, Portugal
2023/02/14 - 2023/06/07	Laboratórios de Biotecnologia Molecular e Modelação in silico	Licenciatura em Biotecnologia Medicinal (Licenciatura)	Instituto Politécnico do Porto Escola Superior de Saúde, Portugal

Mentoring / Tutoring

	Topic	Student name
2024/01 - Current	Analysis of effects of NSAIDs on membrane fluidity	Airam Roggero
2023/10 - 2024/09	Discovery of new molecules for the treatment of Machado-Joseph disease	Filipe Rocha
2024/04 - 2024/07	Understanding the Molecular Basis Behind Congenital Disorders of Glycosylation	Pedro Gonçalves
2022/09 - 2024/06	Virtual Screening of Natural Compounds for Antidiabetic Activity in Food Development	Carlos Seiti Shiraishi
2023/09 - 2024/02	Evaluation of acute hepatic toxicity and inflammation induced by nitrosamines in Mus musculus and Danio rerio	Isabelly Annunciato
2023/03 - 2023/11	Development and implementation of an in-silico protocol involving large-scale biomolecular simulations on variants of PMM2-CDG	Tiago Oliveira
2021/04 - 2021/07	Molecular dynamics simulations for the study of the interaction of new drug candidates with putative anti-biofilm activity against Mycobacterium tuberculosis and Staphylococcus aureus	Tiago Barbosa

Other jury / evaluation

	Activity description	Institution / Organization
2024/05/08 - 2024/05/08	IJUP’24 - Moderador científico na área de Química	Universidade do Porto, Portugal
2023/05/10 - 2023/05/12	IJUP’23 - Moderador científico na área de Química	Universidade do Porto, Portugal

Distinctions

Award

2024	Melhor Comunicação Oral no Biophysics Festival - 4th Meeting of Young Biophysics