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Vanessa Oliveira completed his Ph.D. in Biology (specialization in Microbiology) in 2014 in the University of Aveiro. Actually, she is a Doctor Research at the Center for Environmental and Marine Studies (CESAM) and Assistant Professor in the Department of Biology at the University of Aveiro. Her research interests broadly focus on combining ecology and biotechnology to understand the diversity, ecophysiological functions, and biotechnological potential of marine microbes and their associated plasmids. And also characterize the structural and functional composition of complex microbial communities in several habitats and marine organism (e.g. estuarine sediment, deep-sea, halophytes plants, coral reef organims and aquacultures) and their impacts in ecosystem service or host physiology. She has also gained expertise in genomic and metagenomic data analysis. In its Science Vitae curriculum the most frequent terms in the contextualization of scientific and technological production are: Microbiology; Plant-bacteria interactions; Phytoremediation; Salt marshes; Molecular Biology; Marine sponges; Microbioma; Plasmidome; Aquaculture
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Identification

Personal identification

Full name
Vanessa Jesus de Oliveira

Citation names

  • Oliveira, Vanessa
  • Oliveira, V.

Author identifiers

Ciência ID
DC15-CF77-2324
ORCID iD
0000-0003-4223-0851
Researcher Id
K-4593-2014
Scopus Author Id
36544189800

Email addresses

  • v.oliveira@ua.pt (Professional)

Addresses

  • University of Aveiro. Campus Universitário de Santiago, 3810-193, Aveiro, Aveiro, Portugal (Professional)

Websites

Knowledge fields

  • Natural sciences - Biological Sciences - Microbiology
  • Engineering and Technology - Environmental Biotechnology
  • Natural sciences - Biological Sciences - Molecular Biology

Languages

Language Speaking Reading Writing Listening Peer-review
Portuguese (Mother tongue)
English Advanced (C1) Proficiency (C2) Advanced (C1) Advanced (C1)
Spanish; Castilian Intermediate (B1) Advanced (C1) Intermediate (B1) Intermediate (B1)
French Beginner (A1) Beginner (A1) Beginner (A1) Beginner (A1)
Education
Degree Classification
2018/07/17 - 2018/07/20
Concluded
 Metagenomics Bioinformatics 2018 (Outros)
European Bioinformatics Institute, United Kingdom
2014/10/20
Concluded
 Programa Doutoral em Biologia (Doutoramento)
Major in Microbiologia
Universidade de Aveiro, Portugal
"Microbe-mediated recovery salt marshes contaminated with oil hydrocarbons " (THESIS/DISSERTATION)
 Aprovada
2008/12/19
Concluded
 Microbiologia Molecular (Mestrado)
Universidade de Aveiro, Portugal
"Diversidade microbiana em rizosferas de plantas de sapal" (THESIS/DISSERTATION)
 16
2007
Concluded
 Biologia (Licenciatura)
Universidade de Aveiro, Portugal
Affiliation

Science

Category
Host institution 		Employer
2019/01/01 - Current Contracted Researcher (Research) Universidade de Aveiro Centro de Estudos do Ambiente e do Mar, Portugal
2015/02/01 - 2018/12/31 Postdoc (Research) Universidade de Aveiro Centro de Estudos do Ambiente e do Mar, Portugal

Teaching in Higher Education

Category
Host institution 		Employer
2021/09 - Current Invited Assistant Professor (University Teacher) Universidade de Aveiro, Portugal
2018/09/13 - 2018/12/31 Invited Assistant Professor (University Teacher) Universidade de Aveiro Departamento de Biologia, Portugal
2017 - 2018 Invited Assistant Professor (University Teacher) Universidade de Aveiro Departamento de Biologia, Portugal

Others

Category
Host institution 		Employer
2014/01/01 - 2014/12/31 Participation on a felloship designated “Passaporte para Empreendorismo” Universidade de Aveiro, Portugal
2008/11/01 - 2009/10/31 Scholarship research Universidade de Aveiro, Portugal
Projects

Grant

Designation Funders
2015/02/01 - 2018/12/31 Evaluation of the synergistic effects caused by global climate change and environmental pollution on bacterial plasmid diversity in marine demosponges inhabiting Portuguese estuaries: ecological and biotechnological implications.
SFRH/BPD/101919/2014
Post-doc Fellow
Fundação para a Ciência e a Tecnologia
Concluded
2015/11 - 2015/12 Molecular analysis to study microbial communities in deep sea sediments - Short Term Scientific Mission (STSM) - e-COST Action FLOWS (ES1301)
COST-STSM-ES1301-30064
Other
European Cooperation in Science and Technology, Belgium
Concluded
2009/11/01 - 2014/10/20 Microbe-mediated recovery of salt marshes contaminated with oil hydrocarbons.
SFRH/BD/46977/2008
PhD Student Fellow
Fundação para a Ciência e a Tecnologia
2008/11/01 - 2009/10/31 MARMER: The role of salt marsh plants on mercury cycle. Identifying plant-bacteria-Hg interactions critical for ecosystem remediation.
PTDC (PTDC/MAR/67752/2006)
FCOMP-01-0124-FEDER-007378
Scientific Initiation Fellow
Universidade de Aveiro, Portugal
 Fundação para a Ciência e a Tecnologia
Concluded

Contract

Designation Funders
2024/04 - 2026/03 BIO-UPTAKE - Bio-composites in smart plastic transformation processes to pave the way for large-scale uptake of sustainable bio-based products
Grant Agreement 101057049
10.3030/101057049
Researcher
Ongoing
2021/01/01 - 2025/12/31 Centre for Environmental and Marine Studies
LA/P/0094/2020
10.54499/LA/P/0094/2020
Universidade de Aveiro, Portugal

FCiênciasID Associação para a Investigação e Desenvolvimento de Ciências, Portugal

Universidade de Aveiro Centro de Estudos do Ambiente e do Mar, Portugal
Fundação para a Ciência e a Tecnologia
Ongoing
2019/01/01 - 2024/12/31 Ecological and biotechnological implications of global climate change and environmental pollution in sponge-plasmid microbiome interactions
DL 57/2016/CP1482/CT0109
10.54499/DL57/2016/CP1482/CT0109
Researcher
Universidade de Aveiro, Portugal
 Fundação para a Ciência e a Tecnologia
Ongoing
2023/03 - 2024/08 HumicOil - Using humic substances to modulate microbial communities and improve host resilience to oil hydrocarbon contamination
10.54499/2022.03081.PTDC
Researcher
Fundação para a Ciência e a Tecnologia
Ongoing
2021/03/29 - 2024/03/28 ConTribuT - Conversion of dietary tributyrin in rainbow trout
PTDC/BAA-AGR/3550/2020
Researcher
Fundação para a Ciência e a Tecnologia
Ongoing
2019/09 - 2023/08 4D REEF Past, present, and future of coral reefs in the Coral Triangle
H2020-MSCA-ITN 4D-REEF
Researcher
European Commission
2021/01/01 - 2023/06/30 MAXIMUS.PT- Investigação e desenvolvimento para a produção de larvas e juvenis de pregado em maternidade
17/SI/2019
Researcher
European Regional Development Fund
Concluded
2022/06/01 - 2023/05/31 Bluecomposite: utilização de materiais compósitos de origem biológica para libertação controlada de moduladores microbianos químicos em sistemas de aquicultura de recirculação (ras)
SAICT-45-2021-02
Researcher
Universidade de Aveiro, Portugal
Concluded
2019/10 - 2021/09 SymbioReactor: sustainable production of bioactive metabolites from microbial symbionts of marine sponges and corals
FA_05_2017_032
Researcher
Ministério da Agricultura Florestas e Desenvolvimento Rural
2018/01 - 2020/09 AquaHeal: Microbial modulation in aquacultures with recirculation system: towards a production system suppressor of diseases.
MAR-02.01.01-FEAMP-0031
Researcher
Mar2020 - European Maritime and Fisheries Fund
2019/01/01 - 2019/12/31 Centro de Estudos do Ambiente e do Mar
UID/AMB/50017/2019
Universidade de Aveiro, Portugal
 Fundação para a Ciência e a Tecnologia
Concluded
2016/01 - 2019/06 Assessing the ECOlogical functions and potential bioTECHnological applications of plasmid assemblages from microbial symbionts of marine SPONGEs.
grant.Provided by PTCRIS: 145114
Researcher
Universidade de Aveiro Centro de Estudos do Ambiente e do Mar, Portugal
 Fundação para a Ciência e a Tecnologia
Concluded
2011/05/05 - 2014/12/31 AQUASAFE - Development of new technologies to anticipate and diagnose disease outbreaks in aquaculture.
PROMAR 31-03-05-FEP-0016
Technical development
European Maritime and Fisheries Fund
Concluded
2013 - 2014 Integração de métodos geofísicos, geoquímicos e microbiológicos para a prospeção de hidrocarbonetos em bacias sedimentares de Portugal e Tunísia.
FCT/5952/27/5/2013/S
Researcher
Universidade de Aveiro Centro de Estudos do Ambiente e do Mar, Portugal
 Fundação para a Ciência e a Tecnologia
Concluded
2011/01/01 - 2012/12/31 Projecto Estratégico - LA 17 - 2011-2012
PEst-C/MAR/LA0017/2011
Universidade de Aveiro, Portugal

Universidade de Aveiro Centro de Estudos do Ambiente e do Mar, Portugal
Fundação para a Ciência e a Tecnologia
Concluded
Outputs

Publications

Book chapter
  1. Cunha, A.; Almeida, A.; Coelho, F.J.R.C.; Gomes, N.C.M.; Oliveira, V.; Santos A.L.. "Bacterial Extracellular Enzymatic Activity in Globally Changing Aquatic Ecosystems". In Research, Technology and Education Topics in Applied Microbiology and Microbial Biotechnology, edited by Vilas A.M.; A Méndez-Vilas, 124-135. Formatex Research Center, 2010.
    Published
  2. Santos A.L.; Baptista I.; Oliveira V.; Henriques I; Gomes N.C.M.; Almeida A.; Correia A.; et al. "Oxidative stress induced by photochemical reactions occuring at the surface microlayer". In Microorganisms in Industry and Environment: From Scientific and Industrial Research to Consumer Products, edited by Mendez-Vilas, A., 978-981. Singapore: World Scientific Publishing, 2010.
    Published
Conference poster
  1. Duarte, João; David Trindade; Vanessa Oliveira; Newton C.M. Gomes; Calado, Ricardo; Pereira, Carla; Almeida, Adelaide. Corresponding author: Pereira, Carla. "Isolation and characterization of four new bacteriophages infecting a Vibrio parahaemolyticus strain". Paper presented in MicroSummit2024, 2024.
  2. Oliveira, V.; Louvado, A.; Silva, D.M.A.; Castro, C.; Cleary, D.F.R.; Gomes, N.C.M.. "Assessing the Bacterial Community Dynamics in a Turbot (Scophthalmus maximus) Larviculture Facility". Paper presented in BAGECO - 16th Symposium on Bacterial Genetics and Ecology, 2023.
  3. Oliveira, V.; Louvado, A.; Coelho, F.J.R.C.; Palma, M.; Magnoni, L.J.; Silva-Brito, F.; Ozório, R.O.A.; et al. "Exploring the effect of tributyrin-supplemented diets in rainbow trout (Oncorhynchus mykiss) gut bacterial communities". Paper presented in BAGECO - 16th Symposium on Bacterial Genetics and Ecology, 2023.
  4. Lopes, M.; Oliveira, V.; Cleary, D.F.R.; Huang, Y.M.; Costa, R.; Keller-Costa, T.; Gomes, N.C.M.. "Characterization of a Novel Flavobacteriacea Isolated from the Marine Sponge Rhabdastrella globostellata". Paper presented in CIÊNCIA 2023, 2023.
  5. Joana Barcelos e Ramos; Susana C. Ribeiro; Kai G. Schulz; Francisco J. R. C. Coelho; Vanessa Oliveira; Ângela Cunha; Newton Gomes; C. Brownlee; Eduardo B. Azevedo. "Emiliania huxleyi bacteria interactions in a changing ocean". Paper presented in 5th International Symposium on the Ocean in a High CO2 World, 2022.
  6. Joana Barcelos e Ramos; Susana C. Ribeiro; Kai G. Schulz; Francisco J. R. C. Coelho; Vanessa Oliveira; Ângela Cunha; Newton Gomes; et al. "Phytoplankton - bacteria interactions in a changing ocean". Paper presented in Marine microbes in a changing climate, Royal Society, 2022.
  7. Beatriz Gomes; Vanessa Oliveira; Elmano Ramalheira; Sónia Mendo; Sónia Ferreira; Tânia Caetano. "The genetics of OXA-48-positive Escherichia coli and Klebsiella pneumoniae". Paper presented in III International Meeting of the Portuguese Society of Genetics, 2022.
  8. Sara Silva; Adriana Ribeiro; Vanessa Oliveira; Elmano Ramalheira; Sónia Mendo; Sónia Ferreira; Tânia Caetano. "The genetics of an outbreak of NDM-producing Klebsiella pneumoniae in a Portuguese hospital". Paper presented in III International Meeting of the Portuguese Society of Genetics, 2022.
  9. Marques, Matilde; Almeida, João; Mil-Homens, Dalila; Fialho, Arsénio; Oliveira, Vanessa; Gomes, Newton; Costa, Rodrigo; Keller-Costa, Tina. "Bioprospecting bacterial symbionts of marine animals: sponge and coralassociated Gammaproteobacteria inhibit growth of notorious human and aquaculture pathogens.". Paper presented in MicroBiotec 21, 2021.
  10. Almeida, João; Marques, Matilde; Oliveira, Vanessa; Egas, Conceição; Mil-Homens, Dalila; Fialho, Arsénio; Teixeira, Miguel Cacho; et al. "Marine host-associated bacteria show versatile secondary metabolite biosynthesis capacities and antimicrobial activities.". Paper presented in MicroBiotec 21, 2021.
  11. Oliveira, V.; Polónia, A.R.M.; Cleary, D.F.R.; Yusheng, M.A.; de Voogd, N.J.; da Rocha, U.N.; Gomes, N.C.M.. "Plasmid diversity of bacterial communities associated with the marine sponge Cinachyrella sp.". Paper presented in Microbiotec’19, 2019.
  12. Polónia, A.R.M.; Oliveira, V.; Toscan, R.B.; Saraiva, J.P.; da Rocha, U.N.; de Voogd, N.J.; Cleary, D.F.R.; Gomes, N.C.M.. "Metagenomic analysis of the sponge Cinachyrella sp., seawater and sediment of a Taiwanese coral reef ecosystem.". Paper presented in Microbiotec’19, 2019.
  13. Oliveira, V.; Polónia, A.R.M.; Cleary, D.F.R.; Yusheng, M. A.; De Voogd, N.J.; da Rocha, U.N.; Gomes, N.C.M.. "Amplification of Plasmid DNA from sponge-associated bacterial communities using a selective multiply-primed rolling circle amplification". Paper presented in BAGECO - 15th Symposium on Bacterial Genetics and Ecology, 2019.
  14. Oliveira, V.; Cleary, D.F.R.; Yusheng, M.A.; De Voogd, N.J.; Gomes, N.C.M.. "Characterization of bacterial populations hosting plasmids in marine sponges from Taiwan". Paper presented in ISME 17 - 17th International Symposium on Microbial Ecology, 12-17 August, Leipzig, Germany, 2018.
  15. Oliveira, V.; Gomes, N.C.M.; Almeida, A.; Ezequiel, J.; Serôdio, J.; Silva, A.M.S.; Simões, M.M.Q.; Silva, H.; Cunha, A.. "Evaluation of plant-microbe interaction in 2-methylnaphthalene contaminated sediments". Paper presented in Portuguese Congress of Microbiology and Biotechnology – MICROBIOTEC’ 13, 6-8 December, Aveiro, Portugal. Abstract Book p. 173, 2013.
  16. Silva, A.P.; Oliveira, V.; Sousa, F.; Gomes, N.C.M.; Almeida, A.; Serafim, L.; Cunha, A.. "Effect of salinity in the production of rhamnolipids by Pseudomonas strains isolated from Ria de Aveiro". Paper presented in Portuguese Congress of Microbiology and Biotechnology – MICROBIOTEC’ 13, 6-8 December, Aveiro, Portugal. Abstract Book p. 164, 2013.
  17. Oliveira, V.; Gomes, N.C.M.; Almeida, A.; Silva, A.M.S.; Simões, M.M.Q.; Smalla, K.; Cunha, A.. "Characterization of endophytic community structure and functional diversity associated with two salt marshes plants (Halimione portulacoides and Sarcocornia perennis)". Paper presented in FEMS 2013 - 5th Congress of European Microbiologists. July 21-25, Leipzig, Germany, 2013.
  18. Silva, A.P.; Oliveira, V.; Gomes, N.C.M.; Almeida, A.; Cunha, A.. "Effect of culture medium in the production of bacterial rhamnolipids". Paper presented in FEMS 2013 - 5th Congress of European Microbiologists. July 21-25, Leipzig, Germany, 2013.
  19. Coelho, F.J.R.C.; Santos, A.L.; Oliveira, V.; Santos, L.; Gomes, N.C.M.; Almeida, A.; Cunha, A.. "Padrões de Variação da Actividade Enzimática Extracelular Bacteriana na Ria De Aveiro.". Paper presented in Jornadas da Ria de Aveiro, Aveiro, Portugal., 2011.
  20. Andreia, C.; Oliveira, V.; Baptista, I.; Almeida, A.; Cunha, A.; Barroso, C.M.; Suzuki, S.; Mendo, S.. "Tributyltin (TBT) effect in the metabolic activity of TBT-resistant and sensitive estuarine bacteria". Paper presented in Bageco11, 2011.
  21. Santos, A.L.; Oliveira, V.; Baptista, I.; Moreirinha, C.; Henriques, I.; Gomes, N.C.M.; Delgadillo, I.; Correia, A.; Cunha, A.. "Wavelength dependence of the molecular targets involved in UV-induced damage to aquatic bacteria". Paper presented in 12th Symposium on Aquatic Microbial Ecology. 28 August to 2 September, Rostock, Germany. Abstract book p. 214, 2011.
  22. Santos, A. L.; Baptista, I.; Oliveira, V.; Lopes, S.; Henriques, I.; Gomes, N.C.M.; Almeida, A.; Correia, A.; Cunha, A.. "Role of Photochemically-Induced Oxidative Stress in Determining the Biological Effects of UV Radiation in Bacteria". Paper presented in III Internacional Conference on Environmental, Industrial and Applied Microbiology. Lisbon, Portugal, 2-4 December. Abstract Book p. 111, 2009.
  23. Coelho, F.J.R.C.; Sousa, S.; Santos, A. L.; Oliveira, V.; Gomes, N.C.M.; Almeida, A.; Cunha, A.. "PAH degrading Bacterial Community from the Sea Surface Microlayer in an estuarine system". Paper presented in III Internacional Conference on Environmental, Industrial and Applied Microbiology. Lisbon, Portugal de 2 a 4 de December de 2009. Abstract Book p. 651, 2009.
  24. Oliveira, V.; Santos, A. L.; Coelho, F.J.R.C.; Aguiar, C.; Gomes, N.C.M.; Almeida, A.; Cunha, A.. "Structural diversity, physiological profiles and abundance of sulfate-reducing bacteria in bacterial communities of salt-marsh sediments (Ria de Aveiro, Portugal)". Paper presented in 11th Symposium on Aquatic Microbiology - SAME11, Piran, Slovenia, 3 August to 4 September. Abstract book, p. 177, 2009.
  25. Silva, RN.; Tomé, AC.; Neves, M.G.P.M.S.; Faustino, M.A.F.; Cavaleiro, J.A.S; Oliveira, V.; Cunha, A.; Almeida, A.. "Evaluation of the adsorvation/activity relationship of a cationic porphyrin in Bacillus endospores". Paper presented in 8º Encontro nacional de Química Orgânica, Universidade de Aveiro, Portugal, 1-3 July. Caderno de resumos p.51, 2009.
  26. Oliveira, V.; Aguiar, C.; Gomes, N.C.M.; Almeida, A.; Cunha, A.. "Património Microbiológico do Sapal da Ria de Aveiro: importância das bactérias para a reciclagem de matéria orgânica". Paper presented in Congresso Internacional de História e Património de Aveiro. Centro Cultural e de Congressos de Aveiro, Aveiro, Portugal, 4-5 June, 2009.
  27. Santos, A. L.; Coelho, F.J.R.C.; Oliveira, V.; Santos, L.; Almeida, A.; Cunha, A.. "Seasonal and spatial patterns of heterotrophic activity of bacterioneuston and bacterioplankton communities in the estuarine system of Ria de Aveiro, Portugal". Paper presented in Congresso Nacional Micro'07 - Biotec'07 - XXXIII JPG. Universidade de Lisboa, Portugal, 30 November - 2 December. Abstract book p. 125, 2007.
  28. Santos, A.L.; Mendes, C.; Coelho, F.J.R.C.; Oliveira, V.; Santos, L.; Almeida, A.; Cunha, A.. "Dynamics of bacterionuston and bacterioplankton communities in the estuarine system Ria de Aveiro, Portugal". Paper presented in 10th Symposium on Aquatic Microbiology - SAME10, Universidade do Algarve, Faro, Portugal, 3-8 September. Caderno de Resumos, p. 67, 2007.
  29. Cunha, A.; Coelho, F.J.R.C.; Santos, A. L.; Oliveira, V.; Santos, L.; Almeida, A.. "Characterization of bacterioplankton and bacterioneuston in the estuarine system Ria de Aveiro, Portugal". Paper presented in Plankton Symposium IV, João Pessoa, Paraíba, Brasil, 1 -5 April. BDUA - Journal of Biology, 2: 45, 2007.
  30. Santos, L.; Cunha, A.; Gomes, A.; Santos, A. L.; Hornibrooke, E.; Pinheiro, L.M.; Nuzzo, M.; Oliveira, V.; Almeida, A.. "Distribution and activity of prokaryote communities in the sediments of the mud volcano Porto (Gulf of Cadiz)". Paper presented in 16th conference of the TTR (training trough research) programme. Bremen, Germany, 29 January-1 February. Abstract book, p.55, 2007.
Journal article
  1. Oliveira, Vanessa; Cleary, Daniel F. R.; Polónia, Ana R. M.; Huang, Yusheng M.; Rocha, Ulisses; Voogd, Nicole J. de; Gomes, Newton C. M.. "Unravelling a Latent Pathobiome Across Coral Reef Biotopes". Environmental Microbiology 26 12 (2024): https://doi.org/10.1111/1462-2920.70008.
    10.1111/1462-2920.70008
  2. João Duarte; David Trindade; Vanessa Oliveira; Newton C. M. Gomes; Ricardo Calado; Carla Pereira; Adelaide Almeida. "Isolation and Characterization of Infection of Four New Bacteriophages Infecting a Vibrio parahaemolyticus Strain". Antibiotics (2024): https://doi.org/10.3390/antibiotics13111086.
    10.3390/antibiotics13111086
  3. Antonio Louvado; Davide A. M. Silva; Vanessa Oliveira; Carolina Castro; Daniel F. R. Cleary; Newton C. M. Gomes. "Association between Turbot (Scophthalmus maximus) Fish Phenotype and the Post-Larval Bacteriome". Microorganisms (2024): https://doi.org/10.3390/microorganisms12102014.
    10.3390/microorganisms12102014
  4. Inês Martinho; Márcia Braz; João Duarte; Ana Brás; Vanessa Oliveira; Newton C. M. Gomes; Carla Pereira; Adelaide Almeida. "The Potential of Phage Treatment to Inactivate Planktonic and Biofilm-Forming Pseudomonas aeruginosa". Microorganisms (2024): https://doi.org/10.3390/microorganisms12091795.
    10.3390/microorganisms12091795
  5. Tadeu, Amanda Dias; Duarte, João; Trindade, David; Costa, Pedro; Venâncio, Cátia; Lopes, Isabel; Oliveira, Vanessa; et al. "Bacteriophages to control Vibrio alginolyticus in live feeds prior to their administration in larviculture". Journal of Applied Microbiology 135 5 (2024): http://dx.doi.org/10.1093/jambio/lxae115.
    Published • 10.1093/jambio/lxae115
  6. João Duarte; Carolina Máximo; Pedro Costa; Vanessa Oliveira; Newton C. M. Gomes; Jesús L. Romalde; Carla Pereira; Adelaide Almeida. "Potential of an Isolated Bacteriophage to Inactivate Klebsiella pneumoniae: Preliminary Studies to Control Urinary Tract Infections". Antibiotics (2024): https://doi.org/10.3390/antibiotics13020195.
    10.3390/antibiotics13020195
  7. Inês de Castro; Susana Ribeiro; Vanessa Oliveira; Francisco J. R. C. Coelho; Maria de Lurdes Dapkevicius; Eduardo Brito de Azevedo; Joana Barcelos e Ramos. "Brachybacterium atlanticum sp. nov., a novel marine bacterium isolated from the Atlantic Ocean". International Journal of Systematic and Evolutionary Microbiology (2023): https://doi.org/10.1099/ijsem.0.005959.
    10.1099/ijsem.0.005959
  8. Antonio Louvado; Carolina Castro; Davide A. M. Silva; Vanessa Oliveira; Luís E. C. Conceição; Daniel F. R. Cleary; Newton C. M. Gomes. "Assessing the Effects of Rotifer Feed Enrichments on Turbot (Scophthalmus maximus) Larvae and Post-Larvae Gut-Associated Bacterial Communities". Microorganisms (2023): https://doi.org/10.3390/microorganisms11020520.
    10.3390/microorganisms11020520
  9. Cleary, D F R; Oliveira, V; Gomes, N C M; Bialecki, A; de Voogd, N J. "A comparison of free-living and sponge-associated bacterial communities from a remote oceanic island with a focus on calcareous sponges". FEMS Microbiology Ecology 99 3 (2023): http://dx.doi.org/10.1093/femsec/fiad014.
    10.1093/femsec/fiad014
  10. Cleary, D.F.R.; de Voogd, N.J.; Stuij, T.M.; Swierts, T.; Oliveira, V.; Polónia, A.R.M.; Louvado, A.; Gomes, N.C.M.; Coelho, F.J.R.C.. "A Study of Sponge Symbionts from Different Light Habitats". Microbial Ecology 86 4 (2023): 2819-2837. http://www.scopus.com/inward/record.url?eid=2-s2.0-85168390590&partnerID=MN8TOARS.
    10.1007/s00248-023-02267-x
  11. João F. Almeida; Matilde Marques; Vanessa Oliveira; Conceição Egas; Dalila Mil-Homens; Romeu Viana; Daniel F. R. Cleary; et al. "Marine Sponge and Octocoral-Associated Bacteria Show Versatile Secondary Metabolite Biosynthesis Potential and Antimicrobial Activities Against Human Pathogens". Marine Drugs 21 1 (2022): https://doi.org/10.3390/md21010034.
    Published • 10.3390/md21010034
  12. Joana Barcelos e Ramos; Susana Chaves Ribeiro; Kai George Schulz; Francisco José Riso Da Costa Coelho; Vanessa Oliveira; Angela Cunha; Newton Carlos Marcial Gomes; et al. "Emiliania huxleyi—Bacteria Interactions under Increasing CO2 Concentrations". Microorganisms 10 12 (2022): 2461. https://doi.org/10.3390/microorganisms10122461.
    10.3390/microorganisms10122461
  13. Oliveira, Vanessa; Polónia, Ana R.M.; Cleary, Daniel F.R.; Huang, Yusheng M.; de Voogd, Nicole J.; Keller-Costa, Tina; Costa, Rodrigo; Gomes, Newton C.M.. "Assessing the genomic composition, putative ecological relevance and biotechnological potential of plasmids from sponge bacterial symbionts". Microbiological Research 265 (2022): 127183. http://dx.doi.org/10.1016/j.micres.2022.127183.
    10.1016/j.micres.2022.127183
  14. Sena, Clara; Parkhurst, David L.; Tepley |||, Frank J.; Jiang, Fuqing; van der Land, Cees; Coelho, Francisco JRC; Oliveira, Vanessa; et al. "Formation of calcium chloride brines in volcaniclastic-rich sediments". Frontiers in Earth Science 10 (2022): http://dx.doi.org/10.3389/feart.2022.869567.
    10.3389/feart.2022.869567
  15. João Boaventura; Tânia Caetano; Sónia Mendo; Daniel F. R. Cleary; Newton C. M. Gomes; Vanessa Oliveira; Frank J. Stewart. "Draft Genome Sequence of Vibrio mediterranei Strain CyArs1". Microbiology Resource Announcements (2022): https://doi.org/10.1128/mra.00155-22.
    10.1128/mra.00155-22
  16. Sousa, J.M.G.; Louvado, A.; Coelho, F.J.R.C.; Oliveira, V.; Oliveira, H.; Cleary, D.F.R.; Gomes, N.C.M.. "In vitro study of the modulatory effects of heat-killed bacterial biomass on aquaculture bacterioplankton communities". Scientific Reports 12 1 (2022): http://www.scopus.com/inward/record.url?eid=2-s2.0-85142123872&partnerID=MN8TOARS.
    10.1038/s41598-022-23439-8
  17. Oliveira, Vanessa; Polónia, Ana R. M.; Cleary, Daniel F. R.; Huang, Yusheng M.; Voogd, Nicole J.; Rocha, Ulisses N.; Gomes, Newton C. M.. "Characterization of putative circular plasmids in sponge-associated bacterial communities using a selective multiply-primed rolling circle amplification". Molecular Ecology Resources 21 1 (2021): 110-121. http://dx.doi.org/10.1111/1755-0998.13248.
    10.1111/1755-0998.13248
  18. Pires, A.C.C.; Oliveira, Vanessa; Cleary, D.F.R.; Polónia, A.R.M.; Coelho, F.J.R.C.; Waheed, Z; De Voogd, N.J.; Gomes, N.C.M.. "Bacterial composition and putative functions associated with sponges, sediment and seawater from the Tioman coral reef system, Peninsular Malaysia". Marine Biology Research (2021):
    10.1080/17451000.2021.1891250
  19. Oliveira, Vanessa; Martins, Patrícia; Marques, Bruna; Cleary, Daniel F. R.; Lillebø, Ana I.; Calado, Ricardo. "Aquaponics using a fish farm effluent shifts bacterial communities profile in halophytes rhizosphere and endosphere". Scientific Reports 10 1 (2020): http://dx.doi.org/10.1038/s41598-020-66093-8.
    10.1038/s41598-020-66093-8
  20. Patrícia M. Domingues; Vanessa Oliveira; Luísa Seuanes Serafim; Newton C. M. Gomes; Ângela Cunha. "Biosurfactant Production in Sub-Oxic Conditions Detected in Hydrocarbon-Degrading Isolates from Marine and Estuarine Sediments". International Journal of Environmental Research and Public Health 17 5 (2020): 1746-1746. https://doi.org/10.3390/ijerph17051746.
    10.3390/ijerph17051746
  21. Louvado, A.; Coelho, F.J.R.C.; Oliveira, V.; Gomes, H.; Cleary, D.F.R.; Simões, M.M.Q.; Cunha, A.; Gomes, N.C.M.. "Microcosm evaluation of the impact of oil contamination and chemical dispersant addition on bacterial communities and sediment remediation of an estuarine port environment". Journal of Applied Microbiology 127 1 (2019): 134-149. http://dx.doi.org/10.1111/jam.14261.
    10.1111/jam.14261
  22. Duarte, L. N.; Coelho, F.J.R.C; Oliveira, V.; Cleary, D.F.R.; Martins, P.; Gomes, N.C.M.. "Characterization of bacterioplankton communities from a hatchery recirculating aquaculture system (RAS) for juvenile sole (Solea senegalensis) production". PLOS ONE 14 1 (2019): e0211209. http://dx.doi.org/10.1371/journal.pone.0211209.
    10.1371/journal.pone.0211209
  23. Pires, A.C.C.; Cleary, D.F.R.; Polónia, A.R.M.; Lim, S.C.; De Voogd, N.J.; Oliveira, V.; Gomes, N.C.M.. "Comparison of bacterial communities associated with Xestospongia testudinaria, sediment and seawater in a Singaporean coral reef ecosystem". Journal of the Marine Biological Association of the United Kingdom (2018): 1-12. http://dx.doi.org/10.1017/s0025315418000188.
    10.1017/s0025315418000188
  24. Cleary, D.F.R.; Coelho, F.J.R.C.; Oliveira, V.; Gomes, N. C. M.; Polónia, A.R.M.. "Sediment depth and habitat as predictors of the diversity and composition of sediment bacterial communities in an inter-tidal estuarine environment". Marine Ecology 38 2 (2017): e12411. http://dx.doi.org/10.1111/maec.12411.
    10.1111/maec.12411
  25. Oliveira, V.; Gomes, N.C.M.; Santos, M.; Almeida, A.; Lillebo, A.I.; Ezequiel, J.; Serodio, J.; et al. "Effects of the Inoculant Strain Pseudomonas sp. SPN31 nah + and of 2-Methylnaphthalene Contamination on the Rhizosphere and Endosphere Bacterial Communities of Halimione portulacoides". Current microbiology 74 5 (2017): 575-583. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=MEDLINE&KeyUT=MEDLINE:28260118&KeyUID=MEDLINE:28260118.
    10.1007/s00284-017-1197-y
  26. Coelho, F.J.R.C.; Cleary, D.F.R.; Costa, R.; Ferreira, M.; Polónia, A.R.M.; Silva, A.M.S.; Simões, M.M.Q.; Oliveira, V.; Gomes, N.C.M.. "Multitaxon activity profiling reveals differential microbial response to reduced seawater pH and oil pollution". Molecular Ecology 25 18 (2016): 4645-4659. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000383344400017&KeyUID=WOS:000383344400017.
    10.1111/mec.13779
  27. Hentati, O.; Oliveira, V.; Sena, C.; Bouji, M.S.M.; Wali, A.; Ksibi, M.. "Soil contamination with olive mill wastes negatively affects microbial communities, invertebrates and plants". Ecotoxicology 25 8 (2016): 1500-1513. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000386710800005&KeyUID=WOS:000386710800005.
    10.1007/s10646-016-1700-4
  28. Oliveira, V.; Silva, A.; Marques. B.; Almeida, A.; Gomes, N.C.M.; Lillebø, A.; Cunha, A.. "Microcosm Assessment of the Effect of an Acute Mercury Contamination Event on the Structure and Activity of Sediment Bacterial Communities". Applied Microbiology: open access 01 01 (2015): http://dx.doi.org/10.4172/2471-9315.1000102.
    10.4172/2471-9315.1000102
  29. Coelho, F.J.R.C.; Cleary, D.F.R.; Rocha, R.J.M.; Calado, R.; Castanheira, J.M.; Rocha, S.M.; Silva, A.M.S.; et al. "Unraveling the interactive effects of climate change and oil contamination on laboratory-simulated estuarine benthic communities". Global Change Biology 21 5 (2015): 1871-1886. http://www.scopus.com/inward/record.url?eid=2-s2.0-84927959320&partnerID=MN8TOARS.
    10.1111/gcb.12801
  30. Oliveira, Vanessa; Gomes, Newton C. M.; Almeida, Adelaide; Silva, Artur M. S.; Silva, Helena; Cunha, Ângela. "Microbe-Assisted Phytoremediation of Hydrocarbons in Estuarine Environments". Microbial Ecology 69 1 (2014): 1-12. http://dx.doi.org/10.1007/s00248-014-0455-9.
    10.1007/s00248-014-0455-9
  31. Oliveira, V.; Gomes, N.C.M.; Cleary, D.F.R.; Almeida, A.; Silva, A.M.S.; Simões, M.M.Q.; Silva, H.; Cunha, A.. "Halophyte plant colonization as a driver of the composition of bacterial communities in salt marshes chronically exposed to oil hydrocarbons". FEMS Microbiology Ecology 90 3 (2014): 647-662. http://www.scopus.com/inward/record.url?eid=2-s2.0-84914820941&partnerID=MN8TOARS.
    10.1111/1574-6941.12425
  32. Oliveira, V.; Gomes, N.C.M.; Almeida, Adelaide; Silva, A.M.S.; Simoes, M.M.Q.; Smalla, K.; Cunha, A.. "Hydrocarbon contamination and plant species determine the phylogenetic and functional diversity of endophytic degrading bacteria". Molecular Ecology 23 6 (2013): 1392-1404. http://dx.doi.org/10.1111/mec.12559.
    10.1111/mec.12559
  33. Domingues P.M.; Louvado A.; Oliveira V.; Coelho F.J.; Almeida A.; Gomes N.C.M.; Cunha A.. "Selective cultures for the isolation of biosurfactant producing bacteria: comparison of environmental inocula and hydrophobic carbon sources". Preparative Biochemistry & Biotechnology 43 3 (2013): 237-55.
    10.1080/10826068.2012.719848
  34. Santos, A.L.; Oliveira, V.; Baptista, I.; Henriques, I.; Gomes, N.C.M.; Almeida, A.; Correia, A.; Cunha, A.. "Wavelength dependence of biological damage induced by UV radiation on bacteria". Archives of Microbiology 195 1 (2012): 63-74. http://dx.doi.org/10.1007/s00203-012-0847-5.
    10.1007/s00203-012-0847-5
  35. Cruz A.; Oliveira V.; Baptista I.; Almeida A.; Cunha A.; Suzuki S.; Mendo S.. "Effect of tributyltin (TBT) in the metabolic activity of TBT-resistant and sensitive estuarine bacteria". Environmental Toxicology 21 1 (2012): 11-17.
    10.1002/tox.20605
  36. Cleary D.F.R.; Oliveira V.; Gomes N.C.M.; Pereira A.; Henriques I.; Marques B.; Almeida A.; et al. "Impact of sampling depth and plant species on local environmental conditions, microbiological parameters and bacterial composition in a mercury contaminated salt marsh". Marine Pollution Bulletin 64 2 (2012): 263-271.
    10.1016/j.marpolbul.2011.11.020
  37. Oliveira V.; Santos A.L.; Aguiar C.; Santos L.; Salvador A.C.; Gomes N.C.M.; Silva H.; et al. "Prokaryotes in salt marsh sediments of Ria de Aveiro: effects of halophyte vegetation on abundance and diversity". Estuarine, Coastal and Shelf Science 110 (2012): 61-68.
    DOI: 10.1016/j.ecss.2012.03.013
  38. Santos, A.L.; Oliveira, V.; Baptista, I.; Henriques, I.; Gomes, N.C.M.; Almeida, A.; Correia, A.; Cunha, A.. "Effects of UV-B radiation on the structural and physiological diversity of bacterioneuston and bacterioplankton". Applied and Environmental Microbiology 78 6 (2012): 2066-2069. http://www.scopus.com/inward/record.url?eid=2-s2.0-84857831854&partnerID=MN8TOARS.
    10.1128/AEM.06344-11
  39. Oliveira V.; Santos A.L.; Coelho F.; Gomes N.C.M.; Silva H.; Almeida A.; Cunha A.. "Effects of monospecific banks of salt marsh vegetation on sediment bacterial communities". Microbial Ecology 60 1 (2010): 167-179.
    10.1007/s00248-010-9678-6

Intellectual property

Patent
  1. Gomes, Newton C. M.; Oliveira, Vanessa; Coelho, Francisco J. R. C.; dos Santos, A R. L.. 2017. "A portable device, a method to read authentication labels and their uses".
    Granted/Issued

Other

Other output
  1. Unrevealing the interactive effects of climate change and oil contamination on lab-simulated estuarine benthic communities. There is growing concern that modifications to the global environment such as ocean acidification and increased ultraviolet radiation may interact with anthropogenic pollutants to adversely affect the future marine environment. Despite this, little is known about the nature of the potential risks posed by such interactions. Here, we performed a multifactorial microcosm experiment to assess the imp. 2014. Coelho, Francisco J. R. C.; Cleary, Daniel F. R.; Rocha, Rui J. M.; Calado, Ricardo; Castanheira, José M.; Rocha, Sílvia M.; Silva, Artur M. S.; et al. http://hdl.handle.net/10316/27585.
  2. Diversidade microbiana em rizosferas de plantas de sapal. 2008. Oliveira, V.; Oliveira, Vanessa Jesus de. http://hdl.handle.net/10773/4514.
Activities

Oral presentation

Presentation title Event name
Host (Event location)
2023 Genomics and metagenomics of microbial communities: from sampling to data analysis Discipline of " Applied And Environmental Microbiology”
Department of Biology, University of Aveiro (Aveiro, Portugal)
2022 Plant-bacteria interactions in aquaponics systems Advanced Course on Plant-Microbe Interactions
Department of Biology, University of Aveiro (Aveiro, Portugal)
2009/12 Bacterial in salt-marsh sediments: Influence of plant colonization on abundance, Physiological diversity and heterotrophic activity (Ria de Aveiro, Portugal). III Internacional Conference on Environmental, Industrial and Applied Microbiology.
(Lisbon, Portugal)
2008/04 Diversity and Heterotrophic Activity of Bacteria in Salt-Marsh Plant Rhizospheres (Ria de Aveiro, Portugal). VII Simpósio de Pós-Graduação do Departamento de Biologia.
University of Aveiro (Aveiro, Portugal)
2007/09 Influence of plant colonization on the size, physiological diversity and heterotrophic activity of salt marsh bacteriobenthos (Ria de Aveiro, Portugal). 10th Symposium on Aquatic Microbiology - SAME10
University of Algarve (Faro, Portugal)

Supervision

Thesis Title
Role 		Degree Subject (Type)
Institution / Organization
2024 - Current Genomic Insights of Cyanobacteria Populations in a Coral Reef Ecosystems
Supervisor of Carolina Tavares Beito
 Microbiology (Master)
Universidade de Aveiro Departamento de Biologia, Portugal
2024 - Current Draft Genome Sequences and Enzymatic Profiles of Environmental Bacteria Capable of Degrading Polyurethane
Supervisor of Maria Manuel de Carvalho Tavares
 Microbiology (Master)
Universidade de Aveiro Departamento de Biologia, Portugal
2023 - 2024 Phenotypic and genomic characterization of a novel bacterial species isolated from a marine sponge.
Supervisor of Inês Ferreira
Universidade de Aveiro Departamento de Biologia, Portugal
2023 - 2023/06 Phenotypic and Genomic Properties of a marine bacteria, member of the family Flavobacteriaceae, isolated from marine sponge.
Supervisor of Matilde Lopes
 Biologia Marinha e Biotecnologia (Degree)
Instituto Politécnico de Leiria Escola Superior de Turismo e Tecnologia do Mar de Peniche, Portugal
2021 - 2022 Assessment of the biotechnological potential of marine bacteria
Co-supervisor
 Merstrado em Microbiologia (Master)
Universidade de Aveiro Departamento de Biologia, Portugal
2021 - 2022 Screenning of Tropodithietic acid (TDA)-producing by Roseobacter strains
Co-supervisor of Gil Sousa
 Ciências do Mar (Degree)
Universidade de Aveiro Departamento de Física, Portugal
2016 - 2017 Rapid detection of pathogens Vibrio aestuarianus and Vibrio splendidus using loop-mediated isothermal amplification (LAMP)
Co-supervisor of Lúcia Roque
 Biologia (Degree)
Universidade de Aveiro Departamento de Biologia, Portugal
2016 - 2017 Deteção de agentes patógenos em aquaculturas utilizando uma técnica de amplificação isotérmica "LAMP" (Loop-mediated isothermal amplification)
Co-supervisor of Rosa Cirne
 Biologia e Geologia (Degree)
Universidade de Aveiro Departamento de Geociências, Portugal

Event participation

Activity description
Type of event 		Event name
Institution / Organization
2024/07/15 - Current “Substâncias húmica: a terra que limpa” for high school students
Other
 Academia de Verão 2024
Universidade de Aveiro, Portugal
2022/05/05 - Current "O peixe que nós comemos" for high school students
Other
 Atividades de Divulgação do DBio (Scientific Activity)
Universidade de Aveiro Departamento de Biologia, Portugal

Jury of academic degree

Topic
Role 		Candidate name (Type of degree)
Institution / Organization
2024/12/04 Ecogenomics and Biotechnological Potential of Alphaproteobacteria spp. Associated with the Octocoral Eunicella gazelle
(Thesis) Main arguer
 Selene Moura Madureira (Master)
Universidade de Lisboa Instituto Superior Técnico, Portugal
2024/04/15 Ecology and genetics of marine microbial symbionts
(Thesis) Arguer
 Marina Rafaela dos Santos Ferreira (PhD)
Universidade de Aveiro, Portugal
2022 Effects of ocean acidification on benthic microbial communities in estuarine environments
(Thesis) Main arguer
 Maria Joana Baptista Barbosa (Master)
2022 Degradação da matéria orgânica por comunidades microbianas em ecossistemas de carbono azul
(Thesis) Main arguer
 Mariana Maltez Caramujo (Other)
2022 Caracterização da Klebsiella pneumonie NDM-positivas da região centro de PORTUGAL
(Thesis) Main arguer
 Sara Margarida dos Santos Silva (Master)
Universidade de Aveiro, Portugal
2021/02/26 Caracterização de comunidades de bactérias endofíticas de Salicornia ramosissima da Ria de Aveiro
(Thesis) Main arguer
 Sandro Vieira Figueiredo (Master)
Universidade de Aveiro, Portugal
2018/12/18 Effect of halophilic bacteria from Aveiro salt pans in the attenuation of saline stress in plants
(Thesis) Main arguer
 Bruno Miguel Ribeiro Soares (Master)
Universidade de Aveiro Departamento de Biologia, Portugal
2017/07/27 Análise de Hidrocarbonetos de Óleos Minerais em Alimentos
(Thesis) Main arguer
 Adriana Cristina Faria Gomes (Master)
Universidade de Aveiro Departamento de Química, Portugal

Ad Hoc journal article review

Journal title (ISSN) Publisher
2024 - Current Microbiology Spectrum ASM Journals
2023 - Current Microbiol Ecology (00953628) Springer
2023 - Current Microbiome (2049-2618) Springer Nature
2016 - Current Scientific Reports (2045-2322) Springer Nature
2022 - 2022 Biodiversitas Journal of Biological Diversity (1412-033X) Society for Indonesian Biodiversity
2022 - 2022 Marine Drugs (16603397) Multidisciplinary Digital Publishing Institute
2016 - 2016 Life Sciences (0024-3205) Elsevier

Course / Discipline taught

Academic session Degree Subject (Type) Institution / Organization
2022 - Current Genetic (Licenciatura) Universidade de Aveiro Departamento de Biologia, Portugal
2022 - 2022 Transferable Skills in Life Sciences (Mestrado) Universidade de Aveiro Departamento de Biologia, Portugal
2021 - 2022 Cytology And Histology (Licenciatura) Universidade de Aveiro Departamento de Biologia, Portugal
2021 - 2021 Microbiology Laboratory and Fieldwork (Mestrado) Universidade de Aveiro, Portugal
2018 - 2019 Cytology And Histology (Licenciatura) Universidade de Aveiro Departamento de Biologia, Portugal
2017 - 2018 Microbiology (Licenciatura) Universidade de Aveiro Departamento de Biologia, Portugal
2016 - 2017 Microbiology and Pharmacology Nursing, 1st year (Licenciatura) Universidade de Aveiro Departamento de Biologia, Portugal

Other jury / evaluation

Activity description Institution / Organization
2021/06/03 - 2021/06/03 Participation as jury in the defense of student Ana Neves internship with the theme: "Functioning of the salmon gut microbiome and genomic adaptations to anoxic lake environments" Universidade de Aveiro, Portugal
Distinctions

Award

2015 Short term scientific mission grant (in the frame of COST Action ES1301)

Title

2023 ISME young ambassador - since 2023 I serve as young ambassador for the International Society for Microbial Ecology (ISME) in Portugal.